RECOMB-Seq 2017

The Seventh RECOMB Satellite Workshop on Massively Parallel Sequencing

Hong Kong, May 7-8, 2017


(KT: Keynote, RT: Regular Talk, ST: Short Talk)

Regular talks are for 20 minutes (including Q&A) and short talks are for 10 minutes (including Q&A).

Venue: LT6, Level 2, Cheng Yu Tung (CYT) Building, The Chinese University of Hong Kong (CUHK)

Jump to: Day 1, Day 2

Date Time Event
May, 2017
1:00 PM - 2:00 PM
2:00 PM - 3:00 PM
Opening Remarks
SS1: [KT] Olga Troyanskaya
3:00 PM - 3:20 PM
Coffee Break
3:20 PM - 4:20 PM
  1. Pavel Skums, Alex Zelikovsky, Sergey Knyazev, Igor Mandric, Zoya Dimitrova, Sumathi Ramachandran, David Stiven Campo Rendon, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhan O'Connor, Guo-Liang Xia and Yury Khudyakov. QUENTIN: accurate reconstruction of disease transmissions from viral quasispecies genomic data
  2. Xinan Liu, Ye Yu, Jinpeng Liu, Chen Qian and Jinze Liu. A Novel Data Structure to Support Ultra-fast Taxonomic Classification of Metagenomic Sequences with k-mer Signatures
  3. Luca Mariani, Kathryn Weinand, Anastasia Vedenko, Luis A. Barrera and Martha L. Bulyk. Transcription factor-8mer glossary with GENRE genomic background enables precise identification of lineage-specific co-regulators
4:20 PM - 4:30 PM
4:30 PM - 5:00 PM
  1. Tony Ginart, Kaiyuan Zhu, Joseph Hui, Ibrahim Numanagic, David Tse, Thomas Courtade and Cenk Sahinalp. Genomic Reads Forests for Compressed Representation of High Throughput Sequence Data
  2. Hongyi Xin, Jeremie Kim, Sunny Nahar, Can Alkan and Onur Mutlu. LEAP: A Generalization of the Landau-Vishkin Algorithm with Custom Gap Penalties
  3. Mingfu Shao and Carl Kingsford. Theory and Algorithm for the Minimum Path Flow Decomposition Problem
May, 2017
8:30 AM - 9:00 AM
9:00 AM - 10:00 AM
SS4: [KT] Sharon Aviran
10:00 AM - 10:20 AM
Coffee Break
10:20 AM - 11:20 AM
  1. Roye Rozov, Gil Goldshlager, Ron Shamir and Eran Halperin. Faucet: streaming de novo assembly graph construction
  2. Zhe Sun, Ting Wang, Ke Deng, Xiao-Feng Wang, Robert Lafyatis, Ying Ding, Ming Hu and Wei Chen. DIMM-SC: A Dirichlet mixture model for clustering droplet-based single cell transcriptomic data
  3. Dilip Durai and Marcel Schulz. In-silico read normalization using set multicover optimization
11:20 AM - 11:30 AM
11:30 AM - 12:30 PM
  1. Massimo Cairo, Paul Medvedev, Nidia Obscura Acosta, Romeo Rizzi and Alexandru I. Tomescu. Faster Omnitig Listing for Safe and Complete Contig Assembly
  2. Rahul Nihalani, Sriram P. Chockalingam, Shaowei Zhu, Vijay Vazirani and Srinivas Aluru. Probabilistic Estimation of Overlap Graphs for Large Sequence Datasets
  3. Xintong Chen, Oscar Rodriguez, Matthew Pendleton, Bojan Losic and Ali Bashir. TransPac: transposon detection and characterization from long-reads
  4. Jens Quedenfeld and Sven Rahmann. Variant tolerant read mapping using min-hashing
  5. Sarah Yeo, Lauren Coombe, Justin Chu, Rene Warren and Inanc Birol. ARCS: Assembly Roundup by Chromium Scaffolding
  6. Abolfazl Hashemi, Banghua Zhu and Haris Vikalo. A Tensor Factorization Framework for Haplotype Assembly of Diploids and Polyploids
12:30 PM - 2:00 PM
Lunch Break (lunch provided)
2:00 PM - 3:00 PM
  1. Igor Mandric, Sergey Knyazev and Alex Zelikovsky. Repeat-aware evaluation of scaffolding tools
  2. Vikas Bansal. An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments
3:00 PM - 3:20 PM
Coffee Break
3:20 PM - 4:20 PM
Poster Session I [Even numbered posters]
Venue: The Gastronomy Club, Level 5, CYT Building
4:20 PM - 4:30 PM
4:30 PM - 5:30 PM
Poster Session II [Odd numbered posters]
Venue: The Gastronomy Club, Level 5, CYT Building