{"hash":"935238870285852606","title":"Apoptosis and ECM remodeling with immune clearance","description":"This cluster is enriched for apoptotic processes and recognition of apoptotic cells, along with complement pathway activation, suggesting a theme of immune clearance of dying cells. In addition, terms related to collagen fibril organization and endochondral ossification point to extracellular matrix remodeling and bone development. Some terms like aminophospholipid transport and renal albumin absorption hint at membrane and transport processes that can accompany phagocytic and tissue remodeling activities. Overall, the most coherent theme tying these terms together is apoptosis-driven immune recognition and extracellular matrix remodeling.","confidence":"Medium","size":28,"edges":18,"triangles":1,"max_degree":4,"top_function":null,"members":[{"accession":"KAL6733763.1","go_terms":[]},{"accession":"KAL6740582.1","go_terms":[]},{"accession":"KAL6736307.1","go_terms":["GO:0007033","GO:0006878","GO:0015991","GO:0006626","GO:0007035","GO:0006623","GO:0042777","GO:0006814"]},{"accession":"KAL6725695.1","go_terms":["GO:0015917","GO:0006915","GO:0043654"]},{"accession":"KAL6744574.1","go_terms":["GO:0009718","GO:0033330","GO:0052696","GO:0016999","GO:0052697","GO:0033485","GO:0006711","GO:0071412","GO:0070980","GO:0002175","GO:0033303","GO:0030259","GO:0009808"]},{"accession":"KAL6724486.1","go_terms":[]},{"accession":"KAL6726675.1","go_terms":[]},{"accession":"KAL6732819.1","go_terms":["GO:0043050","GO:0018996"]},{"accession":"KAL6735978.1","go_terms":["GO:0006888","GO:0042147","GO:0015031"]},{"accession":"KAL6736926.1","go_terms":[]},{"accession":"KAL6739258.1","go_terms":[]},{"accession":"KAL6722494.1","go_terms":["GO:0015917","GO:0006915","GO:0043654"]},{"accession":"KAL6723956.1","go_terms":[]},{"accession":"KAL6732177.1","go_terms":[]},{"accession":"KAL6740063.1","go_terms":["GO:0040032","GO:0042338","GO:2000478","GO:0032964","GO:0001502","GO:0060355","GO:0045112","GO:0030853","GO:0032836","GO:0070994","GO:0030199","GO:0038063","GO:2000590","GO:0001867","GO:0051873","GO:1903225","GO:0033034","GO:0003431","GO:0043588","GO:0010743","GO:0060351","GO:0048593","GO:0071230","GO:2000534","GO:2000481","GO:0070208","GO:1901492","GO:0035989","GO:2000860","GO:0007155","GO:0006958","GO:0035987","GO:0045162","GO:0001958","GO:0001957","GO:0034381","GO:0030574","GO:0045650","GO:2000584","GO:0043589","GO:0045715","GO:0035848","GO:0060414"]},{"accession":"KAL6741439.1","go_terms":["GO:0010312","GO:0070574","GO:0060173","GO:0006882","GO:0006831","GO:0006830","GO:0044749","GO:0034224","GO:1903615"]},{"accession":"KAL6735529.1","go_terms":[]},{"accession":"KAL6728185.1","go_terms":[]},{"accession":"KAL6742764.1","go_terms":[]},{"accession":"KAL6743220.1","go_terms":[]},{"accession":"KAL6722836.1","go_terms":["GO:0015917","GO:0006915","GO:0043654"]},{"accession":"KAL6731647.1","go_terms":[]},{"accession":"KAL6735287.1","go_terms":["GO:0010459","GO:0007218","GO:0061096","GO:0008345","GO:0002209","GO:1901045","GO:1900075"]},{"accession":"KAL6735632.1","go_terms":[]},{"accession":"KAL6740230.1","go_terms":[]},{"accession":"KAL6737805.1","go_terms":[]},{"accession":"KAL6740447.1","go_terms":[]},{"accession":"KAL6739744.1","go_terms":["GO:0040032","GO:0042338","GO:2000478","GO:0032964","GO:0001502","GO:0060355","GO:0045112","GO:0030853","GO:0032836","GO:0070994","GO:0030199","GO:0038063","GO:2000590","GO:0001867","GO:0051873","GO:1903225","GO:0033034","GO:0003431","GO:0043588","GO:0010743","GO:0060351","GO:0048593","GO:0071230","GO:2000534","GO:2000481","GO:0070208","GO:1901492","GO:0035989","GO:2000860","GO:0007155","GO:0006958","GO:0035987","GO:0045162","GO:0001958","GO:0001957","GO:0034381","GO:0030574","GO:0045650","GO:2000584","GO:0043589","GO:0045715","GO:0035848","GO:0060414"]}],"graph":[["KAL6739258.1","KAL6740582.1",0.736],["KAL6732177.1","KAL6743220.1",0.677],["KAL6732177.1","KAL6741439.1",0.938],["KAL6744574.1","KAL6728185.1",0.809],["KAL6744574.1","KAL6737805.1",0.689],["KAL6744574.1","KAL6743220.1",0.845],["KAL6741439.1","KAL6733763.1",0.89],["KAL6741439.1","KAL6735287.1",0.66],["KAL6741439.1","KAL6743220.1",0.818],["KAL6737805.1","KAL6740230.1",0.516],["KAL6722494.1","KAL6728185.1",0.686],["KAL6735529.1","KAL6735978.1",0.506],["KAL6728185.1","KAL6733763.1",0.622],["KAL6733763.1","KAL6742764.1",0.54],["KAL6725695.1","KAL6735978.1",0.649],["KAL6740582.1","KAL6735978.1",0.697],["KAL6732819.1","KAL6735978.1",0.533],["KAL6723956.1","KAL6743220.1",0.855]],"all_go_terms":{"GO:0006814":1,"GO:0006626":1,"GO:0007033":1,"GO:0015991":1,"GO:0007035":1,"GO:0006623":1,"GO:0042777":1,"GO:0006878":1,"GO:0006915":3,"GO:0043654":3,"GO:0015917":3,"GO:0052697":1,"GO:0006711":1,"GO:0070980":1,"GO:0033303":1,"GO:0030259":1,"GO:0009718":1,"GO:0052696":1,"GO:0016999":1,"GO:0033485":1,"GO:0033330":1,"GO:0009808":1,"GO:0002175":1,"GO:0071412":1,"GO:0018996":1,"GO:0043050":1,"GO:0006888":1,"GO:0042147":1,"GO:0015031":1,"GO:0001958":2,"GO:0033034":2,"GO:2000534":2,"GO:0038063":2,"GO:0001867":2,"GO:0030199":2,"GO:0006958":2,"GO:2000590":2,"GO:0045162":2,"GO:0048593":2,"GO:0045112":2,"GO:0071230":2,"GO:1903225":2,"GO:0035848":2,"GO:0032836":2,"GO:0001957":2,"GO:1901492":2,"GO:2000481":2,"GO:0032964":2,"GO:0040032":2,"GO:0043588":2,"GO:0045650":2,"GO:0003431":2,"GO:0034381":2,"GO:2000584":2,"GO:0001502":2,"GO:0070994":2,"GO:0043589":2,"GO:0060351":2,"GO:0007155":2,"GO:0030574":2,"GO:2000860":2,"GO:0051873":2,"GO:0030853":2,"GO:0060414":2,"GO:0035989":2,"GO:0045715":2,"GO:0060355":2,"GO:0010743":2,"GO:0042338":2,"GO:2000478":2,"GO:0070208":2,"GO:0035987":2,"GO:0010312":1,"GO:0006830":1,"GO:0044749":1,"GO:1903615":1,"GO:0006882":1,"GO:0060173":1,"GO:0006831":1,"GO:0070574":1,"GO:0034224":1,"GO:1901045":1,"GO:0008345":1,"GO:0002209":1,"GO:1900075":1,"GO:0010459":1,"GO:0061096":1,"GO:0007218":1},"recipe_readded":["KAL6724776.1","KAL6732107.1","KAL6722855.1","KAL6740803.1","KAL6736389.1","KAL6732169.1","KAL6739478.1","KAL6723402.1","KAL6723256.1","KAL6740149.1","KAL6732171.1","KAL6733259.1","KAL6732673.1","KAL6743937.1","KAL6737591.1","KAL6732672.1","KAL6735621.1","KAL6737049.1","KAL6722991.1","KAL6734200.1"]}