#bin chrom chromStart chromEnd name score strand refNCBI refUCSC observed molType class valid avHet avHetSE func locType weight exceptions submitterCount submitters alleleFreqCount alleles alleleNs alleleFreqs bitfields 111 chr1 40370176 40370176 rs564192510 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 4477.000000,531.000000, 0.893970,0.106030, 131 chr1 61341695 61341699 rs146746778 0 + TTTA TTTA -/TTTA genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,GMI,LUNTER,PJP,SSMP, 2 -,TTTA, 3258.000000,1750.000000, 0.650559,0.349441, 245 chr1 180879355 180879367 rs142596889 0 + CTGGCGACAGCA CTGGCGACAGCA -/CTGGCGACAGCA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BL,GMI,LUNTER, 2 -,CTGGCGACAGCA, 510.000000,4498.000000, 0.101837,0.898163, 585 chr1 10177 10177 rs367896724 0 + - - -/C genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,BILGI_BIOE, 2 -,C, 2878.000000,2130.000000, 0.574681,0.425319, 585 chr1 10352 10352 rs555500075 0 + - - -/A genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,A, 2817.000000,2191.000000, 0.562500,0.437500, 585 chr1 11007 11008 rs575272151 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4567.000000,441.000000, 0.911941,0.088059, 585 chr1 11011 11012 rs544419019 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4567.000000,441.000000, 0.911941,0.088059, 585 chr1 13109 13110 rs540538026 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, 585 chr1 13115 13116 rs62635286 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI, 2 G,T, 486.000000,4522.000000, 0.097045,0.902955, 585 chr1 13117 13118 rs200579949 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,G, 4522.000000,486.000000, 0.902955,0.097045, 585 chr1 13272 13273 rs531730856 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,G, 476.000000,4532.000000, 0.095048,0.904952, 585 chr1 14463 14464 rs546169444 0 + A A A/T genomic single unknown 0 0 near-gene-3,ncRNA exact 1 1 1000GENOMES, 2 A,T, 4528.000000,480.000000, 0.904153,0.095847, 585 chr1 14598 14599 rs531646671 0 + T T A/T genomic single unknown 0 0 near-gene-3,ncRNA exact 1 1 1000GENOMES, 2 A,T, 739.000000,4269.000000, 0.147564,0.852436, 585 chr1 14603 14604 rs541940975 0 + A A A/G genomic single unknown 0 0 near-gene-3,ncRNA exact 1 1 1000GENOMES, 2 A,G, 4269.000000,739.000000, 0.852436,0.147564, 585 chr1 14676 14677 rs201327123 0 + G G A/G genomic single by-frequency 0.085039 0.187851 near-gene-3,ncRNA exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,G, 17.978001,386.022003, 0.044500,0.955500, 585 chr1 14929 14930 rs75454623 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,ENSEMBL,GMI,SSMP, 2 A,G, 2593.000000,2415.000000, 0.517772,0.482228, 585 chr1 14932 14933 rs199856693 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, 585 chr1 14975 14976 rs71252251 0 - G G C/T genomic single by-cluster,by-frequency 0.090864 0.19281 ncRNA exact 1 NonIntegerChromCount 3 CLINSEQ_SNP,HUMANGENOME_JCVI,SSMP, 2 C,T, 319.970001,16.030001, 0.952292,0.047708, 585 chr1 15210 15211 rs78601809 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,ENSEMBL,GMI,SSMP, 2 G,T, 3050.000000,1958.000000, 0.609026,0.390974, 585 chr1 15710 15711 rs202113635 0 + G G A/G genomic single by-frequency 0.053488 0.154541 intron exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,G, 3.025000,106.974998, 0.027500,0.972500, 585 chr1 15773 15774 rs374029747 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 585 chr1 15776 15777 rs568149713 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4866.000000,142.000000, 0.971645,0.028355, 585 chr1 15903 15903 rs557514207 0 + - - -/C genomic insertion unknown 0 0 ncRNA between 1 2 1000GENOMES,SSIP, 2 -,C, 2799.000000,2209.000000, 0.558906,0.441094, 585 chr1 16808 16809 rs2758113 0 + C C C/G genomic single by-cluster,by-frequency 0.48 0.09798 intron exact 1 4 ENSEMBL,HUMANGENOME_JCVI,SC_JCM,SC_SNP, 2 C,G, 6.000000,4.000000, 0.600000,0.400000, 585 chr1 16840 16841 rs62636368 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 BCMHGSC_JDW,BILGI_BIOE,CLINSEQ_SNP, 2 G,T, 474.000000,13.000000, 0.973306,0.026694, 585 chr1 16948 16949 rs199745162 0 + A A A/C genomic single unknown 0 0 near-gene-3,ncRNA exact 1 2 1000GENOMES,CLINSEQ_SNP, 2 A,C, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 585 chr1 16956 16957 rs200658479 0 + G G G/T genomic single by-frequency 0.024687 0.108325 near-gene-3,ncRNA exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 G,T, 321.924988,4.075000, 0.987500,0.012500, 585 chr1 17019 17020 rs199740902 0 + G G A/G genomic single by-frequency 0.199688 0.244885 near-gene-3,ncRNA exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,G, 31.950001,252.050003, 0.112500,0.887500, maf-5-some-pop,maf-5-all-pops 585 chr1 17221 17222 rs200978805 0 + A A A/G genomic single by-cluster,by-frequency 0.025662 0.110329 intron,near-gene-3 exact 1 NonIntegerChromCount 2 CLINSEQ_SNP,SSMP, 2 A,G, 298.074005,3.926000, 0.987000,0.013000, 585 chr1 17384 17385 rs201535981 0 + G G A/G genomic single by-frequency 0.02955 0.117906 intron,ncRNA exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,G, 3.990000,262.010010, 0.015000,0.985000, 585 chr1 17397 17398 rs200784459 0 + C C A/C genomic single by-cluster,by-frequency 0.13875 0.223883 intron,ncRNA exact 1 NonIntegerChromCount 2 CLINSEQ_SNP,GMI, 2 A,C, 16.950001,209.050003, 0.075000,0.925000, maf-5-some-pop,maf-5-all-pops 585 chr1 17537 17538 rs200046632 0 + C C A/C genomic single by-cluster,by-frequency 0.36532 0.221814 intron,near-gene-5 exact 1 NonIntegerChromCount 2 CLINSEQ_SNP,SSMP, 2 A,C, 50.986000,161.014008, 0.240500,0.759500, maf-5-some-pop,maf-5-all-pops 585 chr1 18848 18849 rs533090414 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 241.000000,4767.000000, 0.048123,0.951877, 585 chr1 33494 33495 rs75468675 0 + C C C/T genomic single by-frequency 0.5 0 unknown exact 1 1 ENSEMBL, 2 C,T, 6.000000,6.000000, 0.500000,0.500000, 585 chr1 33520 33521 rs76098219 0 + T T A/T genomic single by-frequency 0.5 0 unknown exact 1 1 ENSEMBL, 2 A,T, 8.000000,8.000000, 0.500000,0.500000, 585 chr1 47158 47159 rs540662756 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 137.000000,4871.000000, 0.027356,0.972644, 585 chr1 49297 49298 rs200943160 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 C,T, 3917.000000,1091.000000, 0.782149,0.217851, 585 chr1 49553 49554 rs539322794 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4692.000000,316.000000, 0.936901,0.063099, 585 chr1 51478 51479 rs116400033 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 642.000000,4366.000000, 0.128195,0.871805, maf-5-some-pop,maf-5-all-pops 585 chr1 51761 51762 rs559190862 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 585 chr1 51764 51765 rs575564077 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4948.000000,60.000000, 0.988019,0.011981, 585 chr1 52237 52238 rs2691277 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,SC_JCM,SSMP, 2 G,T, 4616.000000,392.000000, 0.921725,0.078275, 585 chr1 54489 54490 rs141149254 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 481.000000,4527.000000, 0.096046,0.903954, 585 chr1 54711 54712 rs552304420 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 585 chr1 54712 54712 rs568927205 0 + - - -/TTTC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TTTC, 2104.000000,2904.000000, 0.420128,0.579872, 585 chr1 54715 54716 rs569128616 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 3560.000000,1448.000000, 0.710863,0.289137, 585 chr1 55163 55164 rs3091274 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,SC_JCM,SSMP, 2 A,C, 4624.000000,384.000000, 0.923323,0.076677, maf-5-some-pop,maf-5-all-pops 585 chr1 55325 55326 rs3107975 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SC_JCM, 2 C,T, 230.000000,4778.000000, 0.045927,0.954073, 585 chr1 55544 55545 rs28396308 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,GMI,SSAHASNP,SSMP, 2 C,T, 3810.000000,1198.000000, 0.760783,0.239217, 585 chr1 57291 57292 rs201418760 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, 585 chr1 58813 58814 rs114420996 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 546.000000,4462.000000, 0.109026,0.890974, maf-5-some-pop 585 chr1 59039 59040 rs62637815 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCMHGSC_JDW,EVA-GONL,TISHKOFF, 2 C,T, 308.000000,4700.000000, 0.061502,0.938498, 585 chr1 60350 60351 rs62637817 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 A,G, 4733.000000,275.000000, 0.945088,0.054912, 585 chr1 61919 61920 rs62637820 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 585 chr1 62776 62777 rs528401309 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 3724.000000,1284.000000, 0.743610,0.256390, 585 chr1 63073 63074 rs202117496 0 + A A A/C genomic single by-frequency 0.032455 0.123184 unknown exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,C, 234.072998,3.927000, 0.983500,0.016500, 585 chr1 63092 63093 rs200092917 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, 585 chr1 63267 63268 rs75478250 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,CLINSEQ_SNP,ENSEMBL,GMI, 2 C,T, 1768.000000,3240.000000, 0.353035,0.646965, maf-5-some-pop,maf-5-all-pops 585 chr1 63515 63516 rs201248921 0 + A A A/G genomic single by-frequency 0.363235 0.222885 unknown exact 1 1 CLINSEQ_SNP, 2 A,G, 98.995003,31.004999, 0.761500,0.238500, maf-5-some-pop,maf-5-all-pops 585 chr1 63526 63527 rs201336938 0 + T T C/T genomic single by-cluster,by-frequency 0.344875 0.231298 unknown exact 1 NonIntegerChromCount 2 CLINSEQ_SNP,GMI, 2 C,T, 27.023001,94.976997, 0.221500,0.778500, maf-5-some-pop,maf-5-all-pops 585 chr1 63642 63643 rs202004563 0 + A A A/G genomic single by-cluster,by-frequency 0.0478 0.14702 unknown exact 1 NonIntegerChromCount 3 BILGI_BIOE,CLINSEQ_SNP,GMI, 2 A,G, 518.966003,13.034000, 0.975500,0.024500, 585 chr1 63670 63671 rs80011619 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 939.000000,4069.000000, 0.187500,0.812500, maf-5-some-pop 585 chr1 63735 63738 rs201888535 0 + CTA CTA -/CTA genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CTA, 1862.000000,3146.000000, 0.371805,0.628195, 585 chr1 64648 64649 rs181431124 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4956.000000,52.000000, 0.989617,0.010383, 585 chr1 64930 64931 rs62639104 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 A,G, 270.000000,4738.000000, 0.053914,0.946086, 585 chr1 65973 65974 rs531923826 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, 585 chr1 66218 66219 rs181028663 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4906.000000,102.000000, 0.979633,0.020367, 585 chr1 66380 66381 rs538833530 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 55.000000,4953.000000, 0.010982,0.989018, 585 chr1 66435 66437 rs560481224 0 + TT TT -/TT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TT, 133.000000,4875.000000, 0.026557,0.973442, 585 chr1 67180 67181 rs28503582 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,SSAHASNP, 2 A,G, 4724.000000,284.000000, 0.943291,0.056709, maf-5-some-pop,maf-5-all-pops 585 chr1 67630 67631 rs533896527 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 80.000000,4928.000000, 0.015974,0.984026, 585 chr1 68081 68082 rs367789441 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 169.000000,4839.000000, 0.033746,0.966254, 585 chr1 69269 69270 rs201219564 0 + A A A/G genomic single by-cluster,by-frequency 0.165587 0.235318 coding-synon exact 1 NonIntegerChromCount 3 CLINSEQ_SNP,GMI,SSMP, 2 A,G, 32.759998,326.880005, 0.091091,0.908909, maf-5-some-pop,maf-5-all-pops 585 chr1 69427 69428 rs140739101 0 + T T G/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,NHLBI-ESP, 2 G,T, 95.000000,4913.000000, 0.018970,0.981030, 585 chr1 69510 69511 rs75062661 0 + A A A/G genomic single unknown 0 0 missense exact 1 NonIntegerChromCount 8 1000GENOMES,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,NHLBI-ESP,SSMP, 2 A,G, 23.069000,760.931030, 0.029425,0.970575, 585 chr1 69760 69761 rs200505207 0 + A A A/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,NHLBI-ESP,SSMP, 2 A,T, 4824.000000,184.000000, 0.963259,0.036741, 585 chr1 69896 69897 rs200676709 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 3446.000000,1562.000000, 0.688099,0.311901, 585 chr1 70316 70317 rs570011908 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 585 chr1 72525 72526 rs547237130 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4827.000000,181.000000, 0.963858,0.036142, 585 chr1 73489 73490 rs558384541 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 585 chr1 74789 74790 rs13328700 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 C,G, 4819.000000,189.000000, 0.962260,0.037740, 585 chr1 74791 74792 rs13328684 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, 585 chr1 76837 76838 rs563953605 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 280.000000,4728.000000, 0.055911,0.944089, 585 chr1 76853 76854 rs367666799 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4838.000000,170.000000, 0.966054,0.033946, 585 chr1 77762 77763 rs557457745 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, 585 chr1 77865 77866 rs563593912 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4734.000000,274.000000, 0.945288,0.054713, 585 chr1 77873 77874 rs62641297 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCMHGSC_JDW,EVA-GONL, 2 A,G, 274.000000,4734.000000, 0.054713,0.945288, 585 chr1 78941 78942 rs372315362 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 585 chr1 79136 79137 rs143777184 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4801.000000,207.000000, 0.958666,0.041334, 585 chr1 81259 81260 rs571136476 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4782.000000,226.000000, 0.954872,0.045128, 585 chr1 81586 81587 rs536406113 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, 585 chr1 82162 82163 rs139113303 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, 585 chr1 82608 82609 rs149189449 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4844.000000,164.000000, 0.967252,0.032748, 585 chr1 83083 83084 rs181193408 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,T, 4608.000000,400.000000, 0.920128,0.079872, 585 chr1 83513 83514 rs201754587 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 3143.000000,1865.000000, 0.627596,0.372404, 585 chr1 83770 83771 rs189906733 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 52.000000,4956.000000, 0.010383,0.989617, 585 chr1 84138 84139 rs183605470 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4928.000000,80.000000, 0.984026,0.015974, 585 chr1 84617 84618 rs576633512 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 585 chr1 85891 85892 rs147185795 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 585 chr1 86027 86028 rs114608975 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 585 chr1 86064 86065 rs116504101 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop,maf-5-all-pops 585 chr1 86191 86192 rs548281277 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSIP, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, 585 chr1 86302 86303 rs2949417 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SC_JCM,SSMP, 2 G,T, 114.000000,4.000000, 0.966102,0.033898, 585 chr1 86330 86331 rs115209712 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 4442.000000,566.000000, 0.886981,0.113019, maf-5-some-pop,maf-5-all-pops 585 chr1 87359 87360 rs180907504 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, 585 chr1 87408 87409 rs139490478 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4811.000000,197.000000, 0.960663,0.039337, 585 chr1 87646 87647 rs146836579 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 344.000000,4664.000000, 0.068690,0.931310, 585 chr1 88168 88169 rs940550 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 3509.000000,1499.000000, 0.700679,0.299321, maf-5-some-pop 585 chr1 88171 88172 rs940551 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TSC-CSHL, 2 A,G, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop,maf-5-all-pops 585 chr1 88176 88177 rs143215837 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 168.000000,4840.000000, 0.033546,0.966454, 585 chr1 88315 88316 rs113759966 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, 585 chr1 88337 88338 rs55700207 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV, 2 A,G, 471.000000,4537.000000, 0.094049,0.905950, maf-5-some-pop 585 chr1 88709 88710 rs186575039 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4818.000000,190.000000, 0.962061,0.037939, 585 chr1 88793 88794 rs571366469 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 98.000000,4910.000000, 0.019569,0.980431, 585 chr1 89598 89599 rs375955515 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,T, 4818.000000,190.000000, 0.962061,0.037939, 585 chr1 89945 89946 rs138808727 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4394.000000,614.000000, 0.877396,0.122604, 585 chr1 90050 90051 rs7545609 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 4666.000000,342.000000, 0.931709,0.068291, 585 chr1 91189 91190 rs143856811 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 196.000000,4812.000000, 0.039137,0.960863, 585 chr1 91420 91421 rs28619159 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,SSAHASNP,SSMP, 2 C,T, 218.000000,4790.000000, 0.043530,0.956470, 585 chr1 91514 91515 rs376723915 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,C, 2871.000000,2137.000000, 0.573283,0.426717, 585 chr1 91535 91536 rs6702460 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,SSMP, 2 G,T, 2901.000000,2107.000000, 0.579273,0.420727, maf-5-some-pop,maf-5-all-pops 585 chr1 91551 91551 rs375085441 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,T, 4687.000000,321.000000, 0.935903,0.064097, 585 chr1 91580 91581 rs151118460 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 2122.000000,2886.000000, 0.423722,0.576278, 585 chr1 92632 92633 rs149776517 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 585 chr1 92857 92858 rs147061536 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 4332.000000,676.000000, 0.865016,0.134984, 585 chr1 95439 95440 rs544194668 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4251.000000,757.000000, 0.848842,0.151158, 585 chr1 98324 98325 rs531515788 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 585 chr1 99686 99687 rs139153227 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, 585 chr1 100857 100858 rs368741663 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 94.000000,4914.000000, 0.018770,0.981230, 585 chr1 104280 104281 rs576842010 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 193.000000,4815.000000, 0.038538,0.961462, 585 chr1 108029 108030 rs550285297 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4849.000000,159.000000, 0.968251,0.031749, 585 chr1 108229 108230 rs563817866 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4704.000000,304.000000, 0.939297,0.060703, 585 chr1 115745 115746 rs147538909 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, 585 chr1 118629 118630 rs374543768 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 585 chr1 122871 122872 rs62642125 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCMHGSC_JDW,SSMP, 2 G,T, 1180.000000,3828.000000, 0.235623,0.764377, 585 chr1 125270 125271 rs377100675 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 1118.000000,3890.000000, 0.223243,0.776757, 585 chr1 129010 129013 rs377161483 0 + ATG ATG -/ATG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSIP,SSMP, 2 -,ATG, 2446.000000,2562.000000, 0.488419,0.511581, 586 chr1 134132 134133 rs551491511 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, 586 chr1 135162 135163 rs374499151 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, 586 chr1 135202 135203 rs147502335 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 586 chr1 135981 135982 rs62642131 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,SSMP, 2 A,G, 562.000000,4446.000000, 0.112220,0.887780, 586 chr1 138592 138593 rs375595668 0 + G G G/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,BILGI_BIOE, 2 G,T, 4782.000000,226.000000, 0.954872,0.045128, 586 chr1 158005 158006 rs371474651 0 + A A A/T genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,SSMP, 2 A,T, 3588.000000,1420.000000, 0.716454,0.283546, 586 chr1 173051 173052 rs564576411 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 532.000000,4476.000000, 0.106230,0.893770, 586 chr1 232448 232449 rs144169752 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,GMI,SSMP, 2 A,G, 595.000000,4413.000000, 0.118810,0.881190, 586 chr1 233472 233473 rs112455420 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,G, 3961.000000,1047.000000, 0.790935,0.209065, maf-5-some-pop 586 chr1 237504 237505 rs367639380 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 143.000000,4865.000000, 0.028554,0.971446, 586 chr1 241368 241369 rs11490246 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,ENSEMBL,GMI,SC_SNP,SSMP, 2 C,T, 0.000000,5008.000000, 0.000000,1.000000, 586 chr1 251627 251628 rs72502741 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,BL,GMI,LUNTER,SSMP, 2 -,C, 697.000000,4311.000000, 0.139177,0.860823, 586 chr1 251662 251663 rs201015357 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 4203.000000,805.000000, 0.839257,0.160743, 586 chr1 252357 252358 rs11489922 0 - G G C/T genomic single by-frequency 0.429688 0.173817 unknown exact 1 3 BCMHGSC_JDW,ENSEMBL,SC_SNP, 2 C,T, 11.000000,5.000000, 0.687500,0.312500, 586 chr1 254185 254186 rs148663102 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, 586 chr1 255632 255633 rs375136935 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4647.000000,361.000000, 0.927915,0.072085, 586 chr1 255923 255923 rs199745078 0 + - - -/TC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,TC, 4314.000000,694.000000, 0.861422,0.138578, 586 chr1 256022 256023 rs554693544 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4697.000000,311.000000, 0.937899,0.062101, 586 chr1 256497 256498 rs369556846 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 A,G, 4698.000000,310.000000, 0.938099,0.061901, 586 chr1 256585 256586 rs140435168 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 82.000000,4926.000000, 0.016374,0.983626, 586 chr1 258136 258137 rs370718922 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 587 chr1 267227 267230 rs374780253 0 + TAA TAA -/TAA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSIP,SSMP, 2 -,TAA, 200.000000,4808.000000, 0.039936,0.960064, 587 chr1 353407 353408 rs2527593 0 - G G C/T genomic single by-cluster,by-frequency,by-2hit-2allele 0.444444 0.157135 unknown exact 1 7 BCMHGSC_JDW,ENSEMBL,HUMANGENOME_JCVI,SC_JCM,SC_SNP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 6.000000,12.000000, 0.333333,0.666667, 587 chr1 362903 362904 rs541569731 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 154.000000,4854.000000, 0.030751,0.969249, 587 chr1 362904 362905 rs182870673 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 G,T, 633.000000,4375.000000, 0.126398,0.873602, 587 chr1 362906 362907 rs138802168 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 109.000000,4899.000000, 0.021765,0.978235, 587 chr1 363244 363244 rs572571697 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,G, 4905.000000,103.000000, 0.979433,0.020567, 588 chr1 521577 521578 rs368130516 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 292.000000,4716.000000, 0.058307,0.941693, 589 chr1 526735 526736 rs28863004 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,ILLUMINA,SSAHASNP, 2 C,G, 4348.000000,660.000000, 0.868211,0.131789, 589 chr1 526831 526832 rs192574259 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 60.000000,4948.000000, 0.011981,0.988019, 589 chr1 526839 526840 rs60396226 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,SSMP, 2 C,T, 851.000000,4157.000000, 0.169928,0.830072, 589 chr1 527206 527207 rs112901516 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4877.000000,131.000000, 0.973842,0.026158, 589 chr1 529781 529782 rs144425991 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4567.000000,441.000000, 0.911941,0.088059, 589 chr1 532008 532009 rs201982178 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 396.000000,4612.000000, 0.079074,0.920927, 589 chr1 532050 532051 rs184296032 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4864.000000,144.000000, 0.971246,0.028754, 589 chr1 532123 532124 rs575867421 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4951.000000,57.000000, 0.988618,0.011382, 589 chr1 532325 532327 rs577455319 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CA, 87.000000,4921.000000, 0.017372,0.982628, 589 chr1 532928 532929 rs12240002 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,SSMP, 2 C,T, 402.000000,4606.000000, 0.080272,0.919728, 589 chr1 533112 533113 rs375227545 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4541.000000,467.000000, 0.906749,0.093251, 589 chr1 533161 533162 rs112369404 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 589 chr1 533169 533170 rs114617477 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 589 chr1 533178 533179 rs111501994 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SSMP, 2 A,G, 4858.000000,150.000000, 0.970048,0.029952, 589 chr1 533196 533197 rs201080464 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 4412.000000,596.000000, 0.880990,0.119010, 589 chr1 533197 533198 rs78497331 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4600.000000,408.000000, 0.918530,0.081470, 589 chr1 533205 533206 rs564920906 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 589 chr1 533290 533291 rs75693233 0 + G G A/G genomic single by-cluster,by-frequency 0.48 0.09798 unknown exact 1 2 ENSEMBL,SSMP, 2 A,G, 6.000000,4.000000, 0.600000,0.400000, 589 chr1 534114 534115 rs372070915 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 163.000000,4845.000000, 0.032548,0.967452, 589 chr1 534320 534321 rs536226227 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, 589 chr1 535695 535696 rs151048542 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 589 chr1 535958 535959 rs202206030 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 375.000000,4633.000000, 0.074880,0.925120, 589 chr1 536094 536095 rs189259765 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,MPI_MOLGEN, 2 C,T, 3014.000000,1994.000000, 0.601837,0.398163, 589 chr1 536365 536366 rs199993660 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 589 chr1 536815 536816 rs373360530 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, 589 chr1 540974 540975 rs80246094 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,G, 6.000000,114.000000, 0.050000,0.950000, maf-5-some-pop,maf-5-all-pops 589 chr1 541078 541079 rs548068956 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 589 chr1 543506 543507 rs61769263 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 BCMHGSC_JDW,ENSEMBL,GMI,HUMANGENOME_JCVI, 2 C,T, 5.000000,5.000000, 0.500000,0.500000, 589 chr1 543635 543636 rs61769264 0 + G G A/G genomic single by-cluster,by-frequency 0.5 0 unknown exact 1 3 BCMHGSC_JDW,ENSEMBL,HUMANGENOME_JCVI, 2 A,G, 5.000000,5.000000, 0.500000,0.500000, 589 chr1 546646 546647 rs375803869 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 581.000000,4427.000000, 0.116014,0.883986, 589 chr1 546647 546648 rs556186494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4782.000000,226.000000, 0.954872,0.045128, 589 chr1 546801 546802 rs113633859 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,BUSHMAN,GMI, 2 C,G, 1619.000000,3389.000000, 0.323283,0.676717, 589 chr1 546804 546805 rs61769283 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCMHGSC_JDW,GMI, 2 C,T, 1130.000000,3878.000000, 0.225639,0.774361, 589 chr1 559134 559135 rs202038446 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 G,T, 122.000000,4886.000000, 0.024361,0.975639, 589 chr1 559479 559480 rs578093669 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, 589 chr1 559984 559985 rs557203750 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 589 chr1 563115 563116 rs533118292 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,G, 94.000000,4914.000000, 0.018770,0.981230, 589 chr1 564157 564158 rs529192661 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, 589 chr1 564597 564598 rs6594028 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3820.000000,1188.000000, 0.762780,0.237220, 589 chr1 564620 564621 rs10458597 0 + C C C/T genomic single by-cluster,by-frequency,by-hapmap 0.045009 0.143104 near-gene-5 exact 1 5 AFFY,BGI,KRIBB_YJKIM,SC_SNP,SSAHASNP, 2 C,T, 721.000000,17.000000, 0.976965,0.023035, maf-5-some-pop 589 chr1 564653 564654 rs147404388 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,GMI,PJP,TISHKOFF, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 589 chr1 564671 564672 rs564134240 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 4947.000000,61.000000, 0.987819,0.012180, 589 chr1 564713 564714 rs563468890 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, 589 chr1 564861 564862 rs1988726 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BILGI_BIOE,BROAD,COMPLETE_GENOMICS,GMI,ILLUMINA,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 260.000000,4748.000000, 0.051917,0.948083, 589 chr1 565135 565136 rs530783041 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, 589 chr1 565264 565265 rs193303036 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4901.000000,107.000000, 0.978634,0.021366, 589 chr1 565373 565374 rs9701779 0 + A A A/G genomic single unknown 0.075356 0.178884 near-gene-5 exact 1 5 BROAD,GMI,ILLUMINA,PERLEGEN,SC_JCM, 2 A,G, 392.000000,16.000000, 0.960784,0.039216, maf-5-some-pop 589 chr1 565405 565406 rs6594029 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 2800.000000,2208.000000, 0.559105,0.440895, 589 chr1 565432 565433 rs9701055 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BROAD,GMI,ILLUMINA,PERLEGEN,SC_JCM,SSAHASNP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 589 chr1 565463 565464 rs6594030 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,COMPLETE_GENOMICS,ENSEMBL,GMI,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 476.000000,4532.000000, 0.095048,0.904952, 589 chr1 565489 565490 rs7349153 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,PJP,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 470.000000,4538.000000, 0.093850,0.906150, 589 chr1 565507 565508 rs9283150 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_JCM,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 462.000000,4546.000000, 0.092252,0.907748, 589 chr1 565540 565541 rs6594031 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4490.000000,518.000000, 0.896565,0.103435, 589 chr1 565585 565586 rs560045585 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 589 chr1 565590 565591 rs7416152 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3632.000000,1376.000000, 0.725240,0.274760, 589 chr1 565595 565596 rs568632519 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 589 chr1 565696 565697 rs3021087 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BROAD,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3585.000000,1423.000000, 0.715855,0.284145, 589 chr1 565727 565728 rs199661867 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,GMI, 2 A,C, 158.000000,4850.000000, 0.031549,0.968450, 589 chr1 565741 565742 rs535902969 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 4678.000000,330.000000, 0.934105,0.065895, 589 chr1 565934 565935 rs55973403 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 C,T, 4691.000000,317.000000, 0.936701,0.063299, 589 chr1 565936 565937 rs7417504 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 197.000000,4811.000000, 0.039337,0.960663, 589 chr1 566020 566021 rs6421778 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,COMPLETE_GENOMICS,ENSEMBL,GMI,SC_JCM,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4847.000000,161.000000, 0.967851,0.032149, 589 chr1 566023 566024 rs6421779 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,SC_JCM,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, 589 chr1 566129 566130 rs1832730 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 3801.000000,1207.000000, 0.758986,0.241014, 589 chr1 566322 566323 rs572007875 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 589 chr1 566572 566573 rs1856866 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3113.000000,1895.000000, 0.621605,0.378395, 589 chr1 566770 566771 rs2185536 0 + C C C/T genomic single by-cluster,by-frequency,by-2hit-2allele 0.091951 0.193702 unknown exact 1 11 BCM-HGSC-SUB,BROAD,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 20.000000,394.000000, 0.048309,0.951691, maf-5-some-pop,maf-5-all-pops 589 chr1 566791 566792 rs9283152 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,PJP,SC_JCM,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 323.000000,4685.000000, 0.064497,0.935503, 589 chr1 566869 566870 rs528621909 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 295.000000,4713.000000, 0.058906,0.941094, 589 chr1 566874 566875 rs2185539 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TSC-CSHL, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop 589 chr1 566932 566933 rs113120793 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,TISHKOFF, 2 A,G, 4899.000000,109.000000, 0.978235,0.021765, 589 chr1 566959 566960 rs2185540 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 102.000000,4906.000000, 0.020367,0.979633, 589 chr1 567091 567092 rs9326622 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, 589 chr1 567118 567119 rs9283153 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,C, 4874.000000,134.000000, 0.973243,0.026757, 589 chr1 567375 567376 rs542830355 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, 589 chr1 567539 567540 rs146275198 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,PJP, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, 589 chr1 567605 567606 rs567334121 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 4787.000000,221.000000, 0.955871,0.044129, 589 chr1 567695 567696 rs367588992 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, 589 chr1 567696 567697 rs1972379 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BROAD,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 860.000000,4148.000000, 0.171725,0.828275, 589 chr1 567725 567726 rs560688216 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 237.000000,4771.000000, 0.047324,0.952676, 589 chr1 567766 567767 rs368638493 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, 589 chr1 567806 567807 rs2853819 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BROAD,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 1001.000000,4007.000000, 0.199880,0.800120, 589 chr1 567824 567825 rs554944061 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4755.000000,253.000000, 0.949481,0.050519, 589 chr1 567866 567867 rs2000096 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_SNP,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4235.000000,773.000000, 0.845647,0.154353, 589 chr1 567939 567940 rs144892194 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,PJP, 2 C,T, 226.000000,4782.000000, 0.045128,0.954872, 589 chr1 568023 568024 rs61769294 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BCMHGSC_JDW,SSMP, 2 A,G, 4680.000000,328.000000, 0.934505,0.065495, 589 chr1 568213 568214 rs373437560 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4757.000000,251.000000, 0.949880,0.050120, 589 chr1 568255 568256 rs4098612 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 4080.000000,928.000000, 0.814696,0.185304, 589 chr1 568307 568308 rs568242848 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 589 chr1 568321 568322 rs9699599 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BROAD,SC_JCM,SSAHASNP,TISHKOFF, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 589 chr1 568411 568412 rs377573539 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 917.000000,4091.000000, 0.183107,0.816893, 589 chr1 568417 568418 rs559716105 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 589 chr1 568418 568419 rs3905037 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 589 chr1 568441 568442 rs7419218 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 355.000000,4653.000000, 0.070887,0.929113, 589 chr1 568450 568451 rs78032279 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 C,T, 4091.000000,917.000000, 0.816893,0.183107, 589 chr1 568630 568631 rs76167418 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ENSEMBL,PJP,SSMP, 2 C,T, 4044.000000,964.000000, 0.807508,0.192492, 589 chr1 568643 568644 rs78639846 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ENSEMBL,PJP,SSMP, 2 C,T, 961.000000,4047.000000, 0.191893,0.808107, 589 chr1 568669 568670 rs75654607 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 C,T, 954.000000,4054.000000, 0.190495,0.809505, 589 chr1 568708 568709 rs148329687 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4059.000000,949.000000, 0.810503,0.189497, 589 chr1 568796 568797 rs140714337 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,PJP, 2 A,G, 4898.000000,110.000000, 0.978035,0.021965, 589 chr1 568799 568800 rs375217967 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BCMHGSC_JDW,SSMP, 2 A,G, 390.000000,4618.000000, 0.077875,0.922125, 589 chr1 568822 568823 rs561728059 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4694.000000,314.000000, 0.937300,0.062700, 589 chr1 568823 568824 rs527519500 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4694.000000,314.000000, 0.937300,0.062700, 589 chr1 569093 569094 rs9283154 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 2891.000000,2117.000000, 0.577276,0.422724, 589 chr1 569132 569133 rs571509850 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 589 chr1 569166 569167 rs577955094 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 75.000000,4933.000000, 0.014976,0.985024, 589 chr1 569203 569204 rs112660509 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,TISHKOFF, 2 C,T, 1702.000000,3306.000000, 0.339856,0.660144, 589 chr1 569225 569226 rs6594032 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,C, 2312.000000,2696.000000, 0.461661,0.538339, 589 chr1 569249 569250 rs149524355 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,GMI,PJP, 2 A,G, 360.000000,4648.000000, 0.071885,0.928115, 589 chr1 569266 569267 rs6650105 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 2338.000000,2670.000000, 0.466853,0.533147, 589 chr1 569590 569591 rs560715817 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 589 chr1 569762 569763 rs562534476 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 4938.000000,70.000000, 0.986022,0.013978, 589 chr1 569769 569770 rs7520428 0 + A A A/G genomic single by-cluster,by-frequency,by-2hit-2allele 0.140322 0.224657 near-gene-5 exact 1 7 BROAD,HGSV,ILLUMINA,PERLEGEN,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 499.000000,41.000000, 0.924074,0.075926, maf-5-some-pop 589 chr1 569802 569803 rs2096045 0 + G G A/G genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.031738 0.121908 unknown exact 1 9 COMPLETE_GENOMICS,GMI,PJP,SC_SNP,SSAHASNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 122.000000,2.000000, 0.983871,0.016129, 589 chr1 569932 569933 rs368347679 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, 589 chr1 570075 570076 rs9326625 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,GMI,SC_SNP,WUGSC_SSAHASNP, 2 C,T, 184.000000,4824.000000, 0.036741,0.963259, 589 chr1 570093 570094 rs7339962 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,BROAD,COMPLETE_GENOMICS,GMI,SC_SNP,WUGSC_SSAHASNP, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 589 chr1 570096 570097 rs2298012 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,COMPLETE_GENOMICS,GMI,SC_SNP,WUGSC_SSAHASNP,YUSUKE, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, 589 chr1 570177 570178 rs9326626 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,ILLUMINA,PJP,SC_JCM,SC_SNP,SSMP, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 589 chr1 570637 570638 rs368120791 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 300.000000,4708.000000, 0.059904,0.940096, 589 chr1 573769 573770 rs557680320 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 589 chr1 573819 573820 rs577824455 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 589 chr1 574149 574150 rs542690860 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 71.000000,4937.000000, 0.014177,0.985823, 589 chr1 574150 574151 rs74047006 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,ILLUMINA-UK, 2 A,T, 4624.000000,384.000000, 0.923323,0.076677, 589 chr1 574349 574350 rs372776175 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, 589 chr1 583482 583483 rs577801075 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4441.000000,567.000000, 0.886781,0.113219, 589 chr1 598832 598833 rs113167131 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 C,T, 537.000000,4471.000000, 0.107228,0.892772, 589 chr1 600317 600318 rs536144132 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, 589 chr1 600477 600478 rs114979547 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 20.000000,98.000000, 0.169492,0.830508, maf-5-some-pop,maf-5-all-pops 589 chr1 600494 600495 rs147241137 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 145.000000,4863.000000, 0.028954,0.971046, 589 chr1 600522 600523 rs558809206 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 589 chr1 601582 601583 rs79221329 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 589 chr1 603514 603515 rs190065153 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 287.000000,4721.000000, 0.057308,0.942692, 589 chr1 603515 603516 rs182349900 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 287.000000,4721.000000, 0.057308,0.942692, 589 chr1 604069 604070 rs560619932 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 589 chr1 604229 604229 rs556776674 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,G, 4818.000000,190.000000, 0.962061,0.037939, 589 chr1 604298 604299 rs111824286 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM-HGSC-SUB, 2 C,G, 4798.000000,210.000000, 0.958067,0.041933, 589 chr1 604351 604352 rs369953380 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, 589 chr1 612688 612691 rs201365517 0 + CTC CTC -/CTC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,SSMP, 2 -,CTC, 442.000000,4566.000000, 0.088259,0.911741, 589 chr1 618385 618386 rs202025951 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 947.000000,4061.000000, 0.189097,0.810903, 589 chr1 618462 618463 rs114496243 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,G, 67.000000,171.000000, 0.281513,0.718487, maf-5-some-pop,maf-5-all-pops 589 chr1 625198 625199 rs568513310 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 589 chr1 625370 625371 rs527774202 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 589 chr1 625391 625392 rs202179828 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 373.000000,4635.000000, 0.074481,0.925519, 589 chr1 625413 625414 rs113952007 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM-HGSC-SUB, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 589 chr1 636284 636285 rs545945172 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 479.000000,4529.000000, 0.095647,0.904353, 589 chr1 636974 636975 rs144572927 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 198.000000,4810.000000, 0.039537,0.960463, 589 chr1 645604 645605 rs185127847 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,T, 75.000000,4933.000000, 0.014976,0.985024, 589 chr1 649191 649192 rs201942322 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 A,T, 4322.000000,686.000000, 0.863019,0.136981, 589 chr1 652827 652827 rs543051265 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4950.000000,58.000000, 0.988419,0.011582, 590 chr1 662413 662414 rs371628865 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 C,T, 4134.000000,874.000000, 0.825479,0.174521, 590 chr1 662621 662622 rs61769339 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 739.000000,4269.000000, 0.147564,0.852436, 590 chr1 666248 666249 rs200188737 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, 590 chr1 668373 668374 rs138476838 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 431.000000,4577.000000, 0.086062,0.913938, 590 chr1 668921 668922 rs536998559 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4921.000000,87.000000, 0.982628,0.017372, 590 chr1 668980 668981 rs199878213 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 140.000000,4868.000000, 0.027955,0.972045, 590 chr1 669053 669054 rs542688526 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 590 chr1 669054 669055 rs553160734 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 590 chr1 669589 669590 rs78732431 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ENSEMBL,GMI,SSMP, 2 G,T, 4572.000000,436.000000, 0.912939,0.087061, 590 chr1 669745 669746 rs536934690 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4760.000000,248.000000, 0.950479,0.049521, 590 chr1 670709 670710 rs553339263 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 4763.000000,245.000000, 0.951078,0.048922, 590 chr1 670711 670712 rs573209121 0 + A A A/C genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,C, 4761.000000,247.000000, 0.950679,0.049321, 590 chr1 671809 671810 rs544842419 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, 590 chr1 672155 672156 rs559349748 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 590 chr1 672329 672330 rs530588710 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 620.000000,4388.000000, 0.123802,0.876198, 590 chr1 672593 672594 rs202013849 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 C,T, 264.000000,4744.000000, 0.052716,0.947284, 590 chr1 672939 672940 rs544698705 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 205.000000,4803.000000, 0.040934,0.959065, 590 chr1 673230 673231 rs529937446 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,T, 120.000000,4888.000000, 0.023962,0.976038, 590 chr1 674210 674211 rs546906063 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 590 chr1 676117 676118 rs146067153 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,BL, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, 590 chr1 691543 691544 rs201222573 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 A,T, 2103.000000,2905.000000, 0.419928,0.580072, 590 chr1 691544 691545 rs548729314 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 691567 691571 rs566250387 0 + ACAG ACAG -/ACAG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,ACAG, 134.000000,4874.000000, 0.026757,0.973243, 590 chr1 692794 692795 rs530212009 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 949.000000,4059.000000, 0.189497,0.810503, 590 chr1 693624 693625 rs190214723 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 94.000000,4914.000000, 0.018770,0.981230, 590 chr1 693730 693731 rs12238997 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, 590 chr1 693822 693823 rs61769351 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,BILGI_BIOE,GMI,SSMP, 2 C,G, 747.000000,4261.000000, 0.149161,0.850839, 590 chr1 700027 700028 rs537409722 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 590 chr1 701298 701299 rs553919012 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4887.000000,121.000000, 0.975839,0.024161, 590 chr1 701746 701747 rs561985667 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 590 chr1 701779 701783 rs201234755 0 + AATA AATA -/AATA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,SSMP, 2 -,AATA, 113.000000,4895.000000, 0.022564,0.977436, 590 chr1 701834 701835 rs189800799 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 132.000000,4876.000000, 0.026358,0.973642, 590 chr1 702957 702958 rs535793062 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 150.000000,4858.000000, 0.029952,0.970048, 590 chr1 703941 703942 rs548160064 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,G, 341.000000,4667.000000, 0.068091,0.931909, 590 chr1 704636 704637 rs142559957 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 237.000000,4771.000000, 0.047324,0.952676, 590 chr1 705451 705452 rs113340103 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,T, 343.000000,4665.000000, 0.068490,0.931510, 590 chr1 705880 705881 rs116763968 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, 590 chr1 705881 705882 rs72631875 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,EVA-GONL, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,maf-5-all-pops 590 chr1 706367 706368 rs55727773 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,SSMP, 2 A,G, 3630.000000,1378.000000, 0.724840,0.275160, 590 chr1 706424 706425 rs529439608 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 590 chr1 706644 706645 rs148085246 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 4394.000000,614.000000, 0.877396,0.122604, 590 chr1 706777 706778 rs113462541 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,GMI,SSMP, 2 A,G, 2163.000000,2845.000000, 0.431909,0.568091, 590 chr1 707521 707522 rs371890604 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 648.000000,4360.000000, 0.129393,0.870607, 590 chr1 707885 707886 rs115229562 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 590 chr1 708604 708605 rs557003163 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4921.000000,87.000000, 0.982628,0.017372, 590 chr1 710087 710088 rs532928796 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 125.000000,4883.000000, 0.024960,0.975040, 590 chr1 710194 710195 rs149744429 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4858.000000,150.000000, 0.970048,0.029952, 590 chr1 711309 711310 rs200531508 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,G, 369.000000,4639.000000, 0.073682,0.926318, 590 chr1 712546 712547 rs373285923 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 133.000000,4875.000000, 0.026557,0.973442, 590 chr1 712761 712762 rs12071806 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 G,T, 686.000000,4322.000000, 0.136981,0.863019, 590 chr1 713091 713092 rs4565649 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 590 chr1 713131 713131 rs200310424 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4876.000000,132.000000, 0.973642,0.026358, 590 chr1 713562 713563 rs4301583 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CSHL-HAPMAP,SC_JCM,TISHKOFF, 2 C,G, 4880.000000,128.000000, 0.974441,0.025559, 590 chr1 713697 713698 rs555211605 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 590 chr1 713976 713977 rs74512038 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4708.000000,300.000000, 0.940096,0.059904, maf-5-some-pop,maf-5-all-pops 590 chr1 714018 714019 rs114983708 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop 590 chr1 714426 714427 rs12028261 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP, 2 A,G, 3870.000000,1138.000000, 0.772764,0.227236, 590 chr1 714438 714439 rs139182182 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, 590 chr1 715073 715074 rs11804379 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,CSHL-HAPMAP,ENSEMBL, 2 A,G, 4862.000000,146.000000, 0.970847,0.029153, 590 chr1 715204 715205 rs141090730 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 4858.000000,150.000000, 0.970048,0.029952, 590 chr1 715264 715265 rs12184267 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, 590 chr1 715366 715367 rs12184277 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, 590 chr1 715924 715925 rs533430962 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 590 chr1 716628 716629 rs541813760 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 73.000000,4935.000000, 0.014577,0.985423, 590 chr1 716977 716978 rs541163143 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 590 chr1 717473 717474 rs141784362 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,CLINSEQ_SNP,EVA-GONL, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 590 chr1 717626 717627 rs147384991 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4937.000000,71.000000, 0.985823,0.014177, 590 chr1 718385 718386 rs10900602 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,GMI,HUMANGENOME_JCVI,SC_SNP,SSMP, 2 A,G, 320.000000,4688.000000, 0.063898,0.936102, 590 chr1 718504 718505 rs181440659 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 590 chr1 719489 719489 rs201939756 0 + - - -/ATAAT genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,ATAAT, 4614.000000,394.000000, 0.921326,0.078674, 590 chr1 719913 719914 rs187772768 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4869.000000,139.000000, 0.972244,0.027756, 590 chr1 720380 720381 rs116801199 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 590 chr1 720582 720583 rs551231909 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, 590 chr1 720796 720797 rs75530702 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BL,ENSEMBL,GMI,PJP,SSMP,TISHKOFF, 2 A,G, 4704.000000,304.000000, 0.939297,0.060703, 590 chr1 721104 721105 rs201616474 0 + A A -/A genomic deletion unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 -,A, 186.000000,4822.000000, 0.037141,0.962859, 590 chr1 721118 721119 rs115019173 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 590 chr1 721289 721290 rs12565286 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 590 chr1 721449 721450 rs2977675 0 - G G C/T genomic single by-cluster,by-frequency,by-hapmap 0.028579 0.116073 ncRNA exact 1 NonIntegerChromCount 3 CLINSEQ_SNP,CSHL-HAPMAP,SC_JCM, 2 C,T, 551.880005,8.120000, 0.985500,0.014500, 590 chr1 721704 721705 rs151072073 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4894.000000,114.000000, 0.977236,0.022764, 590 chr1 721756 721757 rs189147642 0 + T T A/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 141.000000,4867.000000, 0.028155,0.971845, 590 chr1 722364 722368 rs527807809 0 + ATTT ATTT -/ATTT genomic deletion unknown 0 0 ncRNA range 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,ATTT, 141.000000,4867.000000, 0.028155,0.971845, 590 chr1 722558 722559 rs150361918 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 187.000000,4821.000000, 0.037340,0.962660, 590 chr1 722602 722603 rs138029171 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, 590 chr1 722669 722670 rs116030099 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 590 chr1 722979 722980 rs114222710 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 590 chr1 723306 723307 rs28659788 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSAHASNP,SSMP, 2 C,G, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop,maf-5-all-pops 590 chr1 723738 723740 rs59776264 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,HGSV,LUNTER, 2 -,CT, 193.000000,4815.000000, 0.038538,0.961462, 590 chr1 723753 723761 rs373480363 0 + GAGAGAGG GAGAGAGG -/GAGAGAGG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GAGAGAGG, 96.000000,4912.000000, 0.019169,0.980831, 590 chr1 723798 723800 rs34882115 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 8 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,AG, 4012.000000,996.000000, 0.801118,0.198882, 590 chr1 723818 723819 rs11804171 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,T, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop 590 chr1 723890 723891 rs2977670 0 - G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 590 chr1 723917 723918 rs144434834 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 590 chr1 724102 724103 rs111533735 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, 590 chr1 724215 724215 rs558665036 0 + - - -/GGAAC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,GGAAC, 4953.000000,55.000000, 0.989018,0.010982, 590 chr1 724299 724300 rs12069907 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 C,T, 4640.000000,368.000000, 0.926518,0.073482, 590 chr1 724323 724324 rs28692873 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSAHASNP,SSMP, 2 A,G, 180.000000,4828.000000, 0.035942,0.964058, 590 chr1 724516 724517 rs541235902 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 590 chr1 724814 724815 rs533926246 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, 590 chr1 724868 724869 rs12735556 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,GMI,SSAHASNP,SSMP, 2 A,C, 2704.000000,2304.000000, 0.539936,0.460064, 590 chr1 724881 724882 rs62653102 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCMHGSC_JDW,GMI, 2 C,T, 2405.000000,2603.000000, 0.480232,0.519768, 590 chr1 724882 724883 rs200283906 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 2405.000000,2603.000000, 0.480232,0.519768, 590 chr1 725180 725181 rs541223445 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, 590 chr1 725195 725196 rs377099097 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 590 chr1 725266 725267 rs12067227 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 G,T, 4949.000000,59.000000, 0.988219,0.011781, 590 chr1 725274 725275 rs111203396 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 590 chr1 725388 725389 rs375619475 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, 590 chr1 725400 725401 rs553642122 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 590 chr1 725525 725526 rs376431891 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 590 chr1 725554 725555 rs578096639 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 115.000000,4893.000000, 0.022963,0.977037, 590 chr1 726059 726060 rs574368764 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, 590 chr1 726793 726794 rs28454925 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSAHASNP,SSMP, 2 C,G, 4868.000000,140.000000, 0.972045,0.027955, 590 chr1 726943 726944 rs3131979 0 - C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,GMI,HUMANGENOME_JCVI,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 727286 727288 rs376637250 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,SSIP,SSMP, 2 -,AG, 135.000000,4873.000000, 0.026957,0.973043, 590 chr1 727840 727841 rs116587930 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 590 chr1 728093 728094 rs558527005 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 149.000000,4859.000000, 0.029752,0.970248, 590 chr1 728241 728242 rs3131977 0 - C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 728680 728681 rs531916142 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, 590 chr1 728950 728951 rs55744711 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,KRIBB_YJKIM, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, 590 chr1 729678 729679 rs4951859 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 1803.000000,3205.000000, 0.360024,0.639976, 590 chr1 729939 729940 rs143646113 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4873.000000,135.000000, 0.973043,0.026957, 590 chr1 729947 729948 rs2977656 0 - C C A/G genomic single by-cluster,by-frequency,by-hapmap 0.041744 0.13831 unknown exact 1 2 ILLUMINA,SC_JCM, 2 A,G, 9.000000,413.000000, 0.021327,0.978673, maf-5-some-pop 590 chr1 730086 730087 rs148120343 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 64.000000,4944.000000, 0.012780,0.987220, 590 chr1 730231 730232 rs146255828 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 590 chr1 730248 730249 rs138036075 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 590 chr1 730671 730672 rs560122379 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 590 chr1 731047 731048 rs548444285 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, 590 chr1 731598 731599 rs548381014 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, 590 chr1 731715 731716 rs147576002 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, 590 chr1 731716 731717 rs191317422 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 590 chr1 731717 731718 rs142557973 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 773.000000,4235.000000, 0.154353,0.845647, 590 chr1 731823 731824 rs539817107 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4882.000000,126.000000, 0.974840,0.025160, 590 chr1 731848 731849 rs367556699 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 207.000000,4801.000000, 0.041334,0.958666, 590 chr1 731957 731958 rs535581815 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, 590 chr1 732029 732030 rs541276837 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4947.000000,61.000000, 0.987819,0.012180, 590 chr1 732031 732032 rs61770163 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,BILGI_BIOE,EVA-GONL,GMI, 2 A,C, 4229.000000,779.000000, 0.844449,0.155551, 590 chr1 732048 732049 rs578262389 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4861.000000,147.000000, 0.970647,0.029353, 590 chr1 732119 732120 rs114572157 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 590 chr1 732134 732134 rs201400700 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4937.000000,71.000000, 0.985823,0.014177, 590 chr1 732163 732164 rs138208096 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 G,T, 108.000000,4900.000000, 0.021566,0.978435, 590 chr1 732214 732215 rs559238700 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 590 chr1 732745 732746 rs142578063 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 590 chr1 732800 732801 rs144022023 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4733.000000,275.000000, 0.945088,0.054912, 590 chr1 732808 732809 rs12131618 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,SC_SNP,SSAHASNP,SSMP, 2 C,T, 308.000000,4700.000000, 0.061502,0.938498, 590 chr1 733012 733013 rs4951860 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,WI_SSAHASNP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 590 chr1 733428 733429 rs367917297 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 590 chr1 733581 733582 rs199508236 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,LUNTER, 2 -,A, 86.000000,4922.000000, 0.017173,0.982827, 590 chr1 733651 733652 rs529193373 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 590 chr1 733894 733895 rs376492866 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4878.000000,130.000000, 0.974042,0.025959, 590 chr1 734161 734162 rs145810134 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 590 chr1 734331 734332 rs112204126 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 4879.000000,129.000000, 0.974241,0.025759, 590 chr1 734337 734338 rs184443961 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 102.000000,4906.000000, 0.020367,0.979633, 590 chr1 734339 734340 rs146623218 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, 590 chr1 734348 734349 rs141242758 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 764.000000,4244.000000, 0.152556,0.847444, 590 chr1 734382 734383 rs144952147 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 590 chr1 734490 734491 rs7518433 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 C,T, 4700.000000,308.000000, 0.938498,0.061502, 590 chr1 735137 735138 rs530188462 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 128.000000,4880.000000, 0.025559,0.974441, 590 chr1 735266 735267 rs532876432 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 129.000000,4879.000000, 0.025759,0.974241, 590 chr1 735346 735347 rs570873790 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 590 chr1 735557 735558 rs569779319 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 95.000000,4913.000000, 0.018970,0.981030, 590 chr1 735681 735682 rs138174321 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 234.000000,4774.000000, 0.046725,0.953275, 590 chr1 735829 735830 rs377086198 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, 590 chr1 735984 735985 rs12405651 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,CSHL-HAPMAP,SSMP, 2 A,G, 648.000000,4360.000000, 0.129393,0.870607, 590 chr1 736185 736186 rs147133636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 590 chr1 736248 736249 rs141197910 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4876.000000,132.000000, 0.973642,0.026358, 590 chr1 736288 736289 rs79010578 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,GMI, 2 A,T, 699.000000,4309.000000, 0.139577,0.860423, maf-5-some-pop,maf-5-all-pops 590 chr1 736308 736309 rs189570545 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 147.000000,4861.000000, 0.029353,0.970647, 590 chr1 736375 736376 rs150029223 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 172.000000,4836.000000, 0.034345,0.965655, 590 chr1 736625 736626 rs4040690 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TSC-CSHL, 2 A,C, 4929.000000,79.000000, 0.984225,0.015775, 590 chr1 736744 736745 rs4040693 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TSC-CSHL, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, 590 chr1 736848 736851 rs200840253 0 + GCT GCT -/GCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GCT, 110.000000,4898.000000, 0.021965,0.978035, 590 chr1 737082 737083 rs114937396 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4879.000000,129.000000, 0.974241,0.025759, 590 chr1 737124 737125 rs151055642 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 129.000000,4879.000000, 0.025759,0.974241, 590 chr1 737129 737130 rs4040699 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TSC-CSHL, 2 A,C, 163.000000,4845.000000, 0.032548,0.967452, 590 chr1 737262 737263 rs369986014 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, 590 chr1 737406 737411 rs199962889 0 + TTAAT TTAAT -/TTAAT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TTAAT, 232.000000,4776.000000, 0.046326,0.953674, 590 chr1 738474 738475 rs370667023 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 290.000000,4718.000000, 0.057907,0.942093, 590 chr1 738538 738539 rs147999235 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 171.000000,4837.000000, 0.034145,0.965855, 590 chr1 738755 738756 rs527495140 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 590 chr1 739009 739010 rs2488515 0 - T T A/G genomic single by-frequency,by-hapmap 0.032778 0.123752 unknown exact 1 2 SC_JCM,TSC-CSHL, 2 A,G, 177.000000,3.000000, 0.983333,0.016667, 590 chr1 739116 739117 rs140206562 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, 590 chr1 739209 739210 rs141443091 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,EVA-GONL,GMI, 2 A,G, 1143.000000,3865.000000, 0.228235,0.771765, 590 chr1 739507 739508 rs139264486 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4923.000000,85.000000, 0.983027,0.016973, 590 chr1 739564 739565 rs11485757 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,SC_SNP,TISHKOFF, 2 C,G, 358.000000,4650.000000, 0.071486,0.928514, 590 chr1 739607 739608 rs145267859 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 590 chr1 739989 739990 rs571946818 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 590 chr1 740242 740243 rs11488375 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 358.000000,4650.000000, 0.071486,0.928514, 590 chr1 740284 740285 rs193160839 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, 590 chr1 740415 740416 rs11488376 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,G, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop,maf-5-all-pops 590 chr1 740577 740578 rs7521650 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,G, 145.000000,4863.000000, 0.028954,0.971046, 590 chr1 740856 740857 rs12082473 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ENSEMBL,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop 590 chr1 740965 740966 rs555377056 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 130.000000,4878.000000, 0.025959,0.974042, 590 chr1 741266 741267 rs201849753 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,CLINSEQ_SNP,GMI,SSMP, 2 C,T, 260.000000,4748.000000, 0.051917,0.948083, 590 chr1 741557 741558 rs201052459 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 4935.000000,73.000000, 0.985423,0.014577, 590 chr1 741743 741744 rs565303121 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, 590 chr1 741832 741833 rs148581628 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 590 chr1 741840 741841 rs142821459 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4904.000000,104.000000, 0.979233,0.020767, 590 chr1 741849 741850 rs150613421 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4669.000000,339.000000, 0.932308,0.067692, 590 chr1 742593 742594 rs551006412 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4473.000000,535.000000, 0.893171,0.106829, 590 chr1 742812 742813 rs112573343 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4492.000000,516.000000, 0.896965,0.103035, 590 chr1 742989 742990 rs202009397 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 C,T, 4340.000000,668.000000, 0.866613,0.133387, 590 chr1 743020 743021 rs3964475 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TSC-CSHL, 2 C,T, 538.000000,4470.000000, 0.107428,0.892572, 590 chr1 743071 743072 rs200751313 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 A,C, 4026.000000,982.000000, 0.803914,0.196086, 590 chr1 743419 743420 rs201920982 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 236.000000,4772.000000, 0.047125,0.952875, 590 chr1 743636 743637 rs138563743 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 210.000000,4798.000000, 0.041933,0.958067, 590 chr1 744075 744076 rs142181107 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4864.000000,144.000000, 0.971246,0.028754, 590 chr1 744656 744657 rs553916433 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 590 chr1 745020 745021 rs138351431 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 4277.000000,731.000000, 0.854034,0.145966, 590 chr1 745130 745131 rs538233096 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 590 chr1 745642 745643 rs200097270 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 135.000000,4873.000000, 0.026957,0.973043, 590 chr1 746037 746039 rs563991472 0 + AC AC -/AC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AC, 56.000000,4952.000000, 0.011182,0.988818, 590 chr1 746188 746189 rs139221807 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4525.000000,483.000000, 0.903554,0.096446, 590 chr1 746211 746211 rs201075335 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,EVA-GONL, 2 -,G, 4897.000000,111.000000, 0.977835,0.022164, 590 chr1 746632 746644 rs545986140 0 + TTTATGGAAATG TTTATGGAAATG -/TTTATGGAAATG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TTTATGGAAATG, 142.000000,4866.000000, 0.028355,0.971645, 590 chr1 746726 746727 rs144595511 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, 590 chr1 746896 746897 rs140286345 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 590 chr1 747039 747040 rs531539579 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4902.000000,106.000000, 0.978834,0.021166, 590 chr1 747112 747113 rs548147551 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 590 chr1 747753 747755 rs200313238 0 + GC GC -/GC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,GC, 129.000000,4879.000000, 0.025759,0.974241, 590 chr1 747763 747764 rs139314670 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 206.000000,4802.000000, 0.041134,0.958866, 590 chr1 748060 748061 rs147452334 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 224.000000,4784.000000, 0.044728,0.955272, 590 chr1 748278 748279 rs12184331 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4371.000000,637.000000, 0.872804,0.127196, 590 chr1 748444 748445 rs183774475 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, 590 chr1 748445 748446 rs188307914 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 590 chr1 748486 748487 rs184255501 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 59.000000,4949.000000, 0.011781,0.988219, 590 chr1 748877 748878 rs143214544 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 G,T, 1848.000000,3160.000000, 0.369010,0.630990, 590 chr1 749516 749517 rs199789068 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 4440.000000,568.000000, 0.886581,0.113419, 590 chr1 749543 749544 rs368068490 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, 590 chr1 749563 749564 rs200711167 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,C, 4895.000000,113.000000, 0.977436,0.022564, 590 chr1 749643 749644 rs75909375 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,MPI_MOLGEN,SSMP, 2 C,T, 921.000000,4087.000000, 0.183906,0.816094, 590 chr1 749688 749689 rs75448039 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 G,T, 766.000000,4242.000000, 0.152955,0.847045, 590 chr1 749706 749707 rs528695989 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4719.000000,289.000000, 0.942292,0.057708, 590 chr1 749757 749758 rs4399101 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,HGSV,SC_JCM, 2 C,T, 1933.000000,3075.000000, 0.385982,0.614018, 590 chr1 749759 749760 rs12045157 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,HGSV,SC_SNP, 2 C,G, 1933.000000,3075.000000, 0.385982,0.614018, 590 chr1 749963 749963 rs529266287 0 + - - -/AA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AA, 1181.000000,3827.000000, 0.235823,0.764177, 590 chr1 750054 750055 rs11240771 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ENSEMBL,GMI,HGSV,ILLUMINA-UK,SC_SNP, 2 C,T, 900.000000,4108.000000, 0.179712,0.820288, 590 chr1 750114 750115 rs557565171 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 590 chr1 750189 750190 rs573971885 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 590 chr1 751342 751343 rs28544273 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BILGI_BIOE,GMI,SSAHASNP,SSMP, 2 A,T, 1215.000000,3793.000000, 0.242612,0.757388, 590 chr1 751484 751485 rs147115274 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,T, 52.000000,4956.000000, 0.010383,0.989617, 590 chr1 751488 751488 rs200141114 0 + - - -/A genomic insertion unknown 0 0 near-gene-5 between 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 -,A, 3831.000000,1177.000000, 0.764976,0.235024, 590 chr1 751499 751499 rs202218372 0 + - - -/AAT/AT genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 3 -,AAT,AT, 4921.000000,5.000000,82.000000, 0.982628,0.000998,0.016374, 590 chr1 751755 751756 rs143225517 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 1213.000000,3795.000000, 0.242212,0.757788, 590 chr1 752241 752242 rs12090487 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,GMI,SC_SNP,SSMP, 2 A,T, 344.000000,4664.000000, 0.068690,0.931310, 590 chr1 752307 752308 rs201062411 0 + T T -/T genomic deletion unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,T, 138.000000,4870.000000, 0.027556,0.972444, 590 chr1 752477 752478 rs146277091 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 590 chr1 752509 752510 rs372296167 0 + A A -/A genomic deletion unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 108.000000,4900.000000, 0.021566,0.978435, 590 chr1 752592 752593 rs372531941 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 G,T, 138.000000,4870.000000, 0.027556,0.972444, 590 chr1 752616 752617 rs149886465 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,C, 138.000000,4870.000000, 0.027556,0.972444, 590 chr1 753473 753474 rs2073814 0 - C C C/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGBASE,ILLUMINA-UK,SC_JCM,SSMP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 754062 754063 rs12184312 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP, 2 G,T, 4893.000000,115.000000, 0.977037,0.022963, 590 chr1 754104 754105 rs12184325 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, 590 chr1 754120 754121 rs12184335 0 + T T G/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 G,T, 135.000000,4873.000000, 0.026957,0.973043, 590 chr1 754162 754163 rs12184336 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 C,T, 135.000000,4873.000000, 0.026957,0.973043, 590 chr1 754210 754211 rs12184313 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP,SSMP, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, maf-5-some-pop,maf-5-all-pops 590 chr1 754428 754429 rs114339855 0 + T T G/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop 590 chr1 754628 754629 rs10454459 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4869.000000,139.000000, 0.972244,0.027756, 590 chr1 754670 754671 rs10454460 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, 590 chr1 755273 755274 rs78408995 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 590 chr1 755298 755299 rs533744812 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,G, 114.000000,4894.000000, 0.022764,0.977236, 590 chr1 755774 755775 rs3131965 0 - A A C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 9.000000,418.000000, 0.021077,0.978923, 590 chr1 755867 755868 rs75492222 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, 590 chr1 755886 755887 rs3131964 0 - C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 755889 755890 rs3115858 0 - A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 755935 755936 rs543858600 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 65.000000,4943.000000, 0.012979,0.987021, 590 chr1 756256 756257 rs200129875 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,C, 3113.000000,1895.000000, 0.621605,0.378395, 590 chr1 756263 756264 rs528746615 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 3802.000000,1206.000000, 0.759185,0.240815, 590 chr1 756266 756267 rs551793372 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 71.000000,4937.000000, 0.014177,0.985823, 590 chr1 756267 756268 rs12567639 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,SSAHASNP, 2 A,G, 3387.000000,1621.000000, 0.676318,0.323682, 590 chr1 756303 756304 rs11240772 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,G, 4928.000000,80.000000, 0.984026,0.015974, 590 chr1 756377 756378 rs549844831 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 1446.000000,3562.000000, 0.288738,0.711262, 590 chr1 756379 756380 rs3131963 0 - T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 756433 756434 rs61768170 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCMHGSC_JDW,GMI,SSMP, 2 C,G, 944.000000,4064.000000, 0.188498,0.811502, 590 chr1 756780 756781 rs75189095 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop 590 chr1 756785 756786 rs116028335 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 590 chr1 756837 756838 rs77239421 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4893.000000,115.000000, 0.977037,0.022963, 590 chr1 757102 757103 rs76779543 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,SSMP,TISHKOFF, 2 C,T, 4717.000000,291.000000, 0.941893,0.058107, maf-5-some-pop,maf-5-all-pops 590 chr1 757119 757120 rs77598327 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 590 chr1 757690 757691 rs74045212 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,SSMP, 2 C,T, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 590 chr1 757733 757734 rs4951929 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,SSMP,WI_SSAHASNP, 2 C,T, 1261.000000,3747.000000, 0.251797,0.748203, maf-5-some-pop,maf-5-all-pops 590 chr1 757877 757878 rs11240775 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,CSHL-HAPMAP,ENSEMBL,SC_SNP, 2 A,C, 4876.000000,132.000000, 0.973642,0.026358, 590 chr1 757935 757936 rs4951862 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 3750.000000,1258.000000, 0.748802,0.251198, maf-5-some-pop,maf-5-all-pops 590 chr1 758140 758141 rs77042389 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 A,G, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop,maf-5-all-pops 590 chr1 758273 758274 rs539139305 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 178.000000,4830.000000, 0.035543,0.964457, 590 chr1 758448 758449 rs551474487 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 590 chr1 758504 758508 rs201161609 0 + CTAA CTAA -/CTAA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CTAA, 56.000000,4952.000000, 0.011182,0.988818, 590 chr1 758663 758664 rs575422796 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4952.000000,56.000000, 0.988818,0.011182, 590 chr1 758769 758770 rs7554265 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF,WI_SSAHASNP, 2 A,C, 178.000000,4830.000000, 0.035543,0.964457, 590 chr1 758840 758841 rs115498424 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 5.000000,115.000000, 0.041667,0.958333, 590 chr1 759035 759036 rs114525117 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 590 chr1 759176 759177 rs147648542 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, 590 chr1 759292 759293 rs10157329 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,HGSV,SSMP,WUGSC_SSAHASNP, 2 A,T, 772.000000,4236.000000, 0.154153,0.845847, 590 chr1 759617 759618 rs145371340 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 590 chr1 759836 759837 rs114111569 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 A,T, 3769.000000,1239.000000, 0.752596,0.247404, maf-5-some-pop,maf-5-all-pops 590 chr1 759969 759970 rs145098582 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, 590 chr1 760299 760300 rs11564776 0 - A A C/T genomic single by-cluster,by-frequency 0.075356 0.178884 unknown exact 1 2 ILLUMINA,PERLEGEN, 2 C,T, 4.000000,98.000000, 0.039216,0.960784, maf-5-some-pop,maf-5-all-pops 590 chr1 760421 760422 rs143796259 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 C,T, 4660.000000,348.000000, 0.930511,0.069489, 590 chr1 760811 760815 rs200712425 0 + TCTT TCTT -/TCTT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,TCTT, 138.000000,4870.000000, 0.027556,0.972444, 590 chr1 760911 760912 rs1048488 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1332.000000,3676.000000, 0.265974,0.734026, maf-5-some-pop,maf-5-all-pops 590 chr1 760921 760922 rs3882068 0 + G G C/G genomic single by-cluster,by-frequency 0.067033 0.170362 unknown exact 1 2 PERLEGEN,TSC-CSHL, 2 C,G, 139.000000,5.000000, 0.965278,0.034722, 590 chr1 760997 760998 rs148828841 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,C, 139.000000,4869.000000, 0.027756,0.972244, 590 chr1 761057 761074 rs60637637 0 + CTGCTAGTACCTGCTGA CTGCTAGTACCTGCTGA -/CTGCTAGTACCTGCTGA genomic deletion unknown 0 0 near-gene-5 range 1 3 1000GENOMES,HGSV,LUNTER, 2 -,CTGCTAGTACCTGCTGA, 82.000000,4926.000000, 0.016374,0.983626, 590 chr1 761763 761764 rs144708130 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 590 chr1 761799 761800 rs1064272 0 - A A A/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 10 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 761957 761958 rs115523412 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, 590 chr1 761957 761957 rs59038458 0 + - - -/T genomic insertion unknown 0 0 near-gene-5,ncRNA between 1 5 1000GENOMES,GMI,HGSV,LUNTER,PJP, 2 -,T, 3680.000000,1328.000000, 0.734824,0.265176, 590 chr1 762021 762022 rs186393233 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 1 1000GENOMES, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 590 chr1 762319 762320 rs75333668 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 5 1000GENOMES,EXOME_CHIP,GMI,ILLUMINA,SSMP, 2 C,T, 4660.000000,348.000000, 0.930511,0.069489, 590 chr1 762484 762485 rs148989274 0 + C C A/C genomic single unknown 0 0 near-gene-5,ncRNA exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,C, 832.000000,4176.000000, 0.166134,0.833866, 590 chr1 762588 762589 rs71507461 0 + G G C/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,G, 3764.000000,1244.000000, 0.751597,0.248403, maf-5-some-pop,maf-5-all-pops 590 chr1 762591 762592 rs71507462 0 + C C C/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,G, 1244.000000,3764.000000, 0.248403,0.751597, 590 chr1 762600 762601 rs71507463 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,T, 3764.000000,1244.000000, 0.751597,0.248403, 590 chr1 762631 762632 rs3131948 0 + T T A/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 A,T, 3766.000000,1242.000000, 0.751997,0.248003, 590 chr1 762855 762856 rs142969342 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 226.000000,4782.000000, 0.045128,0.954872, 590 chr1 762931 762932 rs534930819 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 80.000000,4928.000000, 0.015974,0.984026, 590 chr1 763393 763394 rs369924889 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 3093.000000,1915.000000, 0.617612,0.382388, 590 chr1 764073 764074 rs139455147 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 590 chr1 764190 764191 rs7515915 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP,WI_SSAHASNP, 2 G,T, 1112.000000,3896.000000, 0.222045,0.777955, 590 chr1 764261 764263 rs200830836 0 + CA CA -/CA genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,CA, 328.000000,4680.000000, 0.065495,0.934505, 590 chr1 765084 765088 rs201697576 0 + TTTG TTTG -/TTTG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,TTTG, 78.000000,4930.000000, 0.015575,0.984425, 590 chr1 765708 765709 rs542635833 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, 590 chr1 765746 765747 rs374164145 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4900.000000,108.000000, 0.978435,0.021566, 590 chr1 765947 765948 rs2519016 0 - C C A/G genomic single by-frequency,by-hapmap 0.204142 0.245758 intron exact 1 1 SC_JCM, 2 A,G, 345.000000,45.000000, 0.884615,0.115385, maf-5-some-pop 590 chr1 766006 766007 rs61768174 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 A,C, 4551.000000,457.000000, 0.908746,0.091254, 590 chr1 766104 766105 rs55784098 0 - T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,AFFY,GMI,PJP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 590 chr1 766291 766292 rs116108736 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 590 chr1 767037 767038 rs12756876 0 + G G A/G genomic single by-frequency,by-hapmap 0.208118 0.246467 intron exact 1 1 SSAHASNP, 2 A,G, 21.000000,157.000000, 0.117978,0.882023, maf-5-some-pop,maf-5-all-pops 590 chr1 767069 767070 rs12741327 0 + A A A/G genomic single by-frequency,by-hapmap 0.142449 0.225683 intron exact 1 1 SSAHASNP, 2 A,G, 275.000000,23.000000, 0.922819,0.077181, maf-5-some-pop 590 chr1 767095 767096 rs115991721 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop,maf-5-all-pops 590 chr1 767676 767677 rs150785412 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 590 chr1 767702 767703 rs28557077 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 590 chr1 767812 767813 rs114066716 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 590 chr1 768116 768116 rs376645387 0 + - - -/GTTTT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,GTTTT, 1922.000000,3086.000000, 0.383786,0.616214, 590 chr1 768447 768448 rs12562034 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 961.000000,4047.000000, 0.191893,0.808107, maf-5-some-pop,maf-5-all-pops 590 chr1 768818 768819 rs12562811 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4532.000000,476.000000, 0.904952,0.095048, 590 chr1 769138 769140 rs59306077 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,AT, 1168.000000,3840.000000, 0.233227,0.766773, 590 chr1 769222 769223 rs60320384 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4050.000000,958.000000, 0.808706,0.191294, maf-5-some-pop,maf-5-all-pops 590 chr1 769373 769374 rs555115897 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 590 chr1 769828 769829 rs2977607 0 - C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 10 1000GENOMES,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,TISHKOFF, 4 A,C,G,T, 4807.000000,201.000000,201.000000,4807.000000, 0.479932,0.020068,0.020068,0.479932, 590 chr1 769962 769963 rs7518545 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,PJP,SSMP,WI_SSAHASNP, 2 A,G, 919.000000,4089.000000, 0.183506,0.816494, 590 chr1 770084 770085 rs150344285 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 79.000000,4929.000000, 0.015775,0.984225, 590 chr1 770376 770377 rs112563271 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP, 2 A,T, 4582.000000,426.000000, 0.914936,0.085064, maf-5-some-pop,maf-5-all-pops 590 chr1 770734 770735 rs139531586 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 4666.000000,342.000000, 0.931709,0.068291, 590 chr1 770885 770886 rs371458725 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 847.000000,4161.000000, 0.169129,0.830871, 590 chr1 770919 770920 rs559608157 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, 590 chr1 771409 771410 rs142008205 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,GMI,PJP,SSMP, 2 C,T, 2040.000000,2968.000000, 0.407348,0.592652, 590 chr1 771520 771521 rs559547836 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 771593 771594 rs6661456 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 590 chr1 771966 771967 rs59066358 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 1048.000000,3960.000000, 0.209265,0.790735, 590 chr1 772027 772028 rs6700874 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop,maf-5-all-pops 590 chr1 772436 772437 rs138499329 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 590 chr1 772926 772927 rs116390263 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 118.000000,2.000000, 0.983333,0.016667, 590 chr1 772954 772955 rs374046288 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 152.000000,4856.000000, 0.030351,0.969649, 590 chr1 773105 773106 rs115616822 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 590 chr1 773123 773124 rs142049927 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, 590 chr1 773135 773136 rs146709693 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 G,T, 4922.000000,86.000000, 0.982827,0.017173, 590 chr1 773168 773169 rs562871362 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 590 chr1 773475 773476 rs115359380 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 G,T, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 773502 773503 rs183122171 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 590 chr1 773537 773538 rs556537677 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 590 chr1 773633 773634 rs143914285 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 4928.000000,80.000000, 0.984026,0.015974, 590 chr1 773836 773837 rs150596232 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4943.000000,65.000000, 0.987021,0.012979, 590 chr1 773997 773998 rs74045277 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 590 chr1 774013 774014 rs370146867 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 590 chr1 774017 774018 rs183293151 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 G,T, 81.000000,4927.000000, 0.016174,0.983826, 590 chr1 774021 774022 rs368745189 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,T, 4927.000000,81.000000, 0.983826,0.016174, 590 chr1 774035 774036 rs116788021 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 590 chr1 774046 774047 rs12022420 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 241.000000,4767.000000, 0.048123,0.951877, maf-5-some-pop 590 chr1 774178 774179 rs144056942 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 77.000000,4931.000000, 0.015375,0.984625, 590 chr1 774179 774180 rs527530291 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 590 chr1 774362 774363 rs12563150 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,GMI,SSMP, 2 A,G, 4713.000000,295.000000, 0.941094,0.058906, 590 chr1 774546 774550 rs201117564 0 + GAGA GAGA -/GAGA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,GAGA, 107.000000,4901.000000, 0.021366,0.978634, 590 chr1 774735 774736 rs28830877 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,C, 159.000000,4849.000000, 0.031749,0.968251, 590 chr1 774873 774874 rs28810152 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP, 2 A,C, 1694.000000,3314.000000, 0.338259,0.661741, 590 chr1 774922 774923 rs28769076 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 C,G, 4907.000000,101.000000, 0.979832,0.020168, 590 chr1 775124 775125 rs147281566 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, 590 chr1 775134 775135 rs138782671 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 186.000000,4822.000000, 0.037141,0.962859, 590 chr1 775144 775145 rs149522745 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4941.000000,67.000000, 0.986621,0.013379, 590 chr1 775180 775181 rs61768182 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 A,G, 3870.000000,1138.000000, 0.772764,0.227236, 590 chr1 775277 775278 rs143489794 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4750.000000,258.000000, 0.948482,0.051518, 590 chr1 775565 775566 rs527480662 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 590 chr1 775606 775607 rs111853383 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 G,T, 72.000000,4936.000000, 0.014377,0.985623, 590 chr1 775636 775637 rs149681289 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 590 chr1 775894 775895 rs146355950 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, 590 chr1 776063 776064 rs150416940 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 590 chr1 776111 776112 rs114498757 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,maf-5-all-pops 590 chr1 776464 776465 rs115048839 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 776498 776499 rs148598925 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 590 chr1 776545 776546 rs12124819 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 4629.000000,379.000000, 0.924321,0.075679, maf-5-some-pop 590 chr1 776813 776814 rs147757531 0 + C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 777081 777082 rs141779525 0 + C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,EVA-GONL,TISHKOFF,WARNICH_LAB, 2 C,G, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 777121 777122 rs2980319 0 - A A A/T genomic single unknown 0 0 intron,ncRNA exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 590 chr1 777231 777232 rs112618790 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, 590 chr1 777236 777237 rs142665498 0 + C C A/C genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 66.000000,4942.000000, 0.013179,0.986821, 590 chr1 777455 777456 rs183307028 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 590 chr1 777512 777513 rs532656528 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, 590 chr1 777635 777636 rs529246218 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 590 chr1 778302 778302 rs112119688 0 + - - -/CT genomic insertion unknown 0 0 intron,ncRNA between 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER, 2 -,CT, 471.000000,4537.000000, 0.094050,0.905950, 590 chr1 778744 778745 rs1055606 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,LEE,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3953.000000,1055.000000, 0.789337,0.210663, maf-5-some-pop,maf-5-all-pops 590 chr1 779285 779286 rs149978434 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, 590 chr1 779310 779312 rs80302052 0 + GA GA -/GA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,GA, 227.000000,4781.000000, 0.045327,0.954673, 590 chr1 779797 779797 rs201580474 0 + - - -/CTCC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,CTCC, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 780161 780162 rs114226235 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 590 chr1 780190 780191 rs376861944 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, 590 chr1 780228 780229 rs12565032 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CSHL-HAPMAP,GMI,JMKIDD_LAB,SSMP, 2 C,T, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop,maf-5-all-pops 590 chr1 780255 780256 rs56978077 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop,maf-5-all-pops 590 chr1 780347 780351 rs202219272 0 + TTAA TTAA -/TTAA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,TTAA, 79.000000,4929.000000, 0.015775,0.984225, 590 chr1 780396 780397 rs141175086 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 590 chr1 780558 780559 rs143527977 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 C,T, 266.000000,4742.000000, 0.053115,0.946885, 590 chr1 780781 780782 rs373747779 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, 590 chr1 780784 780785 rs2977612 0 - T T A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 590 chr1 781057 781058 rs60652745 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,LUNTER,TISHKOFF, 2 -,C, 202.000000,4806.000000, 0.040335,0.959665, 590 chr1 781380 781381 rs59460514 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 590 chr1 781539 781540 rs56220497 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,maf-5-all-pops 590 chr1 781576 781577 rs148585719 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 590 chr1 781641 781642 rs141187081 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 781642 781643 rs143710653 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4899.000000,109.000000, 0.978235,0.021765, 590 chr1 781699 781700 rs11800923 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CSHL-HAPMAP,SSMP,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 590 chr1 781760 781761 rs138670202 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, 590 chr1 781844 781845 rs61768199 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 A,G, 4577.000000,431.000000, 0.913938,0.086062, 590 chr1 782224 782225 rs115304982 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 590 chr1 782395 782396 rs141548377 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 782469 782470 rs76135949 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop,maf-5-all-pops 590 chr1 782527 782528 rs77016203 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 266.000000,4742.000000, 0.053115,0.946885, 590 chr1 782676 782677 rs140041012 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 G,T, 4644.000000,364.000000, 0.927316,0.072684, 590 chr1 782682 782683 rs143563025 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 103.000000,4905.000000, 0.020567,0.979433, 590 chr1 782980 782981 rs6594026 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3516.000000,1492.000000, 0.702077,0.297923, maf-5-some-pop,maf-5-all-pops 590 chr1 783070 783071 rs142849724 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 590 chr1 783303 783304 rs2980295 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,CSHL-HAPMAP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 590 chr1 783317 783318 rs6686696 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 A,G, 4091.000000,917.000000, 0.816893,0.183107, 590 chr1 783756 783757 rs141993323 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 783761 783762 rs369089251 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 784022 784023 rs17160939 0 + A A A/G genomic single by-cluster,by-frequency,by-hapmap 0.085909 0.188611 intron exact 1 3 ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 A,G, 1274.000000,60.000000, 0.955023,0.044978, maf-5-some-pop 590 chr1 784366 784367 rs145218976 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, 590 chr1 784370 784371 rs147651556 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 784750 784751 rs6678592 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 590 chr1 785139 785140 rs114777415 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4910.000000,98.000000, 0.980431,0.019569, 590 chr1 785339 785340 rs138919996 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4781.000000,227.000000, 0.954673,0.045327, 590 chr1 785502 785503 rs115636977 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 590 chr1 786022 786023 rs115208257 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4930.000000,78.000000, 0.984425,0.015575, 590 chr1 786029 786030 rs561919248 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4916.000000,92.000000, 0.981629,0.018371, 591 chr1 786511 786512 rs550156706 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4603.000000,405.000000, 0.919129,0.080871, 591 chr1 786789 786790 rs201096953 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4746.000000,262.000000, 0.947684,0.052316, 591 chr1 786791 786792 rs549237103 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4504.000000,504.000000, 0.899361,0.100639, 591 chr1 786795 786796 rs148833734 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4504.000000,504.000000, 0.899361,0.100639, 591 chr1 786809 786810 rs148319368 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 A,G, 4089.000000,919.000000, 0.816494,0.183506, 591 chr1 786933 786934 rs572125368 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 203.000000,4805.000000, 0.040535,0.959465, 591 chr1 786986 786987 rs190704807 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 68.000000,4940.000000, 0.013578,0.986422, 591 chr1 786994 786995 rs61768202 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 A,G, 1111.000000,3897.000000, 0.221845,0.778155, 591 chr1 787083 787083 rs376433631 0 + - - -/GGATACATCTTGCGTAATGA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,GGATACATCTTGCGTAATGA, 4672.000000,336.000000, 0.932907,0.067093, 591 chr1 787134 787135 rs28753393 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 A,G, 733.000000,4275.000000, 0.146366,0.853634, 591 chr1 787150 787151 rs2519065 0 - G G C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 107.000000,11.000000, 0.906780,0.093220, maf-5-some-pop,maf-5-all-pops 591 chr1 787172 787173 rs115093905 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 G,T, 225.000000,13.000000, 0.945378,0.054622, maf-5-some-pop,maf-5-all-pops 591 chr1 787184 787185 rs56327836 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,PJP,SSMP, 2 A,G, 3206.000000,1802.000000, 0.640176,0.359824, 591 chr1 787204 787205 rs55693913 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, 591 chr1 787261 787262 rs56108613 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 C,G, 1238.000000,3770.000000, 0.247204,0.752796, maf-5-some-pop,maf-5-all-pops 591 chr1 788003 788004 rs115290438 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 591 chr1 788036 788037 rs114653362 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 591 chr1 788594 788595 rs139049437 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4928.000000,80.000000, 0.984026,0.015974, 591 chr1 788712 788713 rs2980306 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 C,T, 3139.000000,1869.000000, 0.626797,0.373203, 591 chr1 788947 788948 rs56183242 0 + G G C/G genomic single by-frequency 0.48 0.09798 intron,ncRNA exact 1 2 ENSEMBL,HGSV, 2 C,G, 6.000000,4.000000, 0.600000,0.400000, 591 chr1 789143 789144 rs373293973 0 + G G C/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,SSMP, 2 C,G, 946.000000,4062.000000, 0.188898,0.811102, 591 chr1 789513 789514 rs200509509 0 + A A -/A genomic deletion unknown 0 0 ncRNA exact 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,A, 1130.000000,3878.000000, 0.225639,0.774361, 591 chr1 789882 789883 rs113186454 0 + A A A/C genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,C, 4930.000000,78.000000, 0.984425,0.015575, 591 chr1 790048 790049 rs74045280 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, 591 chr1 790187 790188 rs74045281 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 591 chr1 790380 790381 rs147035796 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 591 chr1 790464 790465 rs61768207 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 780.000000,4228.000000, 0.155751,0.844249, maf-5-some-pop,maf-5-all-pops 591 chr1 790666 790667 rs116753918 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 591 chr1 790859 790860 rs377289156 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 591 chr1 790983 790984 rs6699310 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BCM_SSAHASNP,BUSHMAN,TISHKOFF, 2 C,G, 241.000000,4767.000000, 0.048123,0.951877, 591 chr1 791035 791036 rs116019130 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 110.000000,4898.000000, 0.021965,0.978035, 591 chr1 791190 791191 rs111818025 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,MPI_MOLGEN,SSMP,TISHKOFF, 2 A,G, 1100.000000,3908.000000, 0.219649,0.780351, 591 chr1 791314 791315 rs116928318 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 591 chr1 791327 791328 rs74877941 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop,maf-5-all-pops 591 chr1 791419 791420 rs145618960 0 + A A A/C genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 A,C, 4930.000000,78.000000, 0.984425,0.015575, 591 chr1 791622 791623 rs114300377 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4898.000000,110.000000, 0.978035,0.021965, 591 chr1 791714 791715 rs144771804 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, 591 chr1 791852 791853 rs6684487 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, 591 chr1 791986 791987 rs77103542 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 226.000000,4782.000000, 0.045128,0.954872, 591 chr1 792262 792263 rs1044922 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LEE,PJP,SC_JCM,SEQUENOM,SSMP,WI_SSAHASNP, 2 A,G, 1072.000000,3936.000000, 0.214058,0.785942, maf-5-some-pop,maf-5-all-pops 591 chr1 792800 792801 rs551581928 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 591 chr1 793144 793145 rs534761347 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 A,G, 1558.000000,3450.000000, 0.311102,0.688898, 591 chr1 793428 793429 rs200956863 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 C,T, 2107.000000,2901.000000, 0.420727,0.579273, 591 chr1 793447 793448 rs545158789 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 591 chr1 793629 793630 rs551597489 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 73.000000,4935.000000, 0.014577,0.985423, 591 chr1 793726 793727 rs116352281 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop,maf-5-all-pops 591 chr1 793921 793922 rs145538528 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 122.000000,4886.000000, 0.024361,0.975639, 591 chr1 794102 794103 rs181953950 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 591 chr1 794150 794151 rs148796366 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 591 chr1 794330 794331 rs11805266 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, 591 chr1 794331 794332 rs12127425 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 582.000000,4426.000000, 0.116214,0.883786, 591 chr1 794373 794374 rs116146680 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 591 chr1 794615 794616 rs7518333 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 267.000000,4741.000000, 0.053315,0.946685, 591 chr1 794622 794623 rs7547353 0 + G G G/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,WI_SSAHASNP, 2 G,T, 4742.000000,266.000000, 0.946885,0.053115, maf-5-some-pop,maf-5-all-pops 591 chr1 794704 794705 rs11804425 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,CSHL-HAPMAP,TISHKOFF, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, 591 chr1 794777 794778 rs142686126 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 81.000000,4927.000000, 0.016174,0.983826, 591 chr1 794873 794874 rs146966553 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 264.000000,4744.000000, 0.052716,0.947284, 591 chr1 795221 795222 rs12131377 0 + C C C/G genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SC_SNP,SSMP, 2 C,G, 4659.000000,349.000000, 0.930312,0.069688, 591 chr1 795413 795414 rs3131935 0 - T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,CSHL-HAPMAP,GMI,SC_JCM,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 591 chr1 795419 795420 rs139541943 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 591 chr1 795752 795753 rs146592146 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, 591 chr1 795823 795824 rs112896657 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 591 chr1 795987 795988 rs59380221 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 3599.000000,1409.000000, 0.718650,0.281350, maf-5-some-pop,maf-5-all-pops 591 chr1 796099 796100 rs12132398 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4579.000000,429.000000, 0.914337,0.085663, 591 chr1 796374 796375 rs12083781 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,SC_SNP, 2 C,T, 959.000000,4049.000000, 0.191494,0.808506, maf-5-some-pop,maf-5-all-pops 591 chr1 796726 796727 rs115637794 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 G,T, 50.000000,70.000000, 0.416667,0.583333, maf-5-some-pop,maf-5-all-pops 591 chr1 796766 796767 rs75932129 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,PJP, 2 A,G, 2649.000000,2359.000000, 0.528954,0.471046, maf-5-some-pop 591 chr1 797036 797037 rs116099766 0 + G G A/G genomic single by-cluster,by-frequency,by-1000genomes 0.027169 0.113341 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 6.000000,112.000000, 0.050848,0.949153, maf-5-some-pop,maf-5-all-pops 591 chr1 797126 797130 rs140389426 0 + TAAT TAAT -/TAAT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,TAAT, 341.000000,4667.000000, 0.068091,0.931909, 591 chr1 797280 797281 rs76631953 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop 591 chr1 797324 797325 rs111739932 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 341.000000,4667.000000, 0.068091,0.931909, maf-5-some-pop 591 chr1 797439 797440 rs58013264 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,TISHKOFF, 2 C,T, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop 591 chr1 797473 797474 rs200972937 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 G,T, 4169.000000,839.000000, 0.832468,0.167532, 591 chr1 797819 797820 rs115861588 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 G,T, 86.000000,4922.000000, 0.017173,0.982827, 591 chr1 798025 798026 rs4951864 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 530.000000,4478.000000, 0.105831,0.894169, maf-5-some-pop,maf-5-all-pops 591 chr1 798184 798185 rs138433656 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 591 chr1 798399 798400 rs10900604 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2952.000000,2056.000000, 0.589457,0.410543, 591 chr1 798429 798430 rs138382600 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 591 chr1 798800 798801 rs12132517 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,PERLEGEN,SC_SNP,SSAHASNP,SSMP, 2 A,G, 371.000000,4637.000000, 0.074082,0.925919, maf-5-some-pop,maf-5-all-pops 591 chr1 799078 799079 rs147406924 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, 591 chr1 799462 799463 rs4245756 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 591 chr1 799498 799499 rs147634896 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 343.000000,4665.000000, 0.068490,0.931510, 591 chr1 799769 799770 rs56737117 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA,JMKIDD_LAB, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 591 chr1 799878 799879 rs149363311 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 591 chr1 800006 800007 rs6681049 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4609.000000,399.000000, 0.920327,0.079673, maf-5-some-pop,maf-5-all-pops 591 chr1 800192 800193 rs143609865 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 4945.000000,63.000000, 0.987420,0.012580, 591 chr1 800382 800383 rs4951931 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 743.000000,4265.000000, 0.148363,0.851637, 591 chr1 800449 800450 rs148396197 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, 591 chr1 800829 800830 rs116737746 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 591 chr1 800969 800970 rs145665953 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BL,EVA-GONL, 2 C,G, 126.000000,4882.000000, 0.025160,0.974840, 591 chr1 801466 801467 rs61768212 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 967.000000,4041.000000, 0.193091,0.806909, 591 chr1 801540 801541 rs201830474 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 65.000000,4943.000000, 0.012979,0.987021, 591 chr1 801660 801661 rs12132974 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, 591 chr1 801679 801680 rs12134490 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,PJP,SC_SNP,SSMP, 2 A,C, 4676.000000,332.000000, 0.933706,0.066294, 591 chr1 801857 801858 rs17276806 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop 591 chr1 801942 801943 rs7516866 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,NHLBI-ESP,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1140.000000,3868.000000, 0.227636,0.772364, 591 chr1 801994 801995 rs7553084 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP,WI_SSAHASNP, 2 A,G, 2306.000000,2702.000000, 0.460463,0.539537, 591 chr1 802005 802006 rs9700144 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP, 2 C,T, 2265.000000,2743.000000, 0.452276,0.547724, 591 chr1 802025 802026 rs7553096 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP,WI_SSAHASNP, 2 A,G, 1938.000000,3070.000000, 0.386981,0.613019, 591 chr1 802081 802082 rs551959943 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, 591 chr1 802092 802093 rs7553197 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SSAHASNP,WI_SSAHASNP, 2 A,G, 7.000000,3.000000, 0.700000,0.300000, 591 chr1 802190 802191 rs71507475 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,G, 9.000000,5.000000, 0.642857,0.357143, 591 chr1 802319 802320 rs12565310 0 + G G A/G genomic single by-cluster,by-frequency,by-2hit-2allele 0.260355 0.249785 unknown exact 1 9 BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP, 2 A,G, 11.000000,2.000000, 0.846154,0.153846, 591 chr1 802346 802347 rs372425838 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,NHLBI-ESP,SSMP, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, 591 chr1 802348 802349 rs376721195 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, 591 chr1 802397 802398 rs111444624 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,NHLBI-ESP,SSMP, 2 C,T, 4674.000000,334.000000, 0.933307,0.066693, 591 chr1 802495 802496 rs10157494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4042.000000,966.000000, 0.807109,0.192891, 591 chr1 802855 802856 rs139867617 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, 591 chr1 803431 803432 rs562238357 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 336.000000,4672.000000, 0.067093,0.932907, 591 chr1 803581 803582 rs17080269 0 - G G A/C cDNA single by-cluster,by-frequency,by-1000genomes 0.025381 0.109757 ncRNA exact 1 NonIntegerChromCount 3 1000GENOMES,SEQUENOM,SSMP, 2 A,C, 73.599998,110.400002, 0.400000,0.600000, maf-5-some-pop,maf-5-all-pops 591 chr1 804012 804013 rs117720955 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop,maf-5-all-pops 591 chr1 804014 804015 rs372466154 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 A,G, 4688.000000,320.000000, 0.936102,0.063898, 591 chr1 804106 804107 rs534659898 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 313.000000,4695.000000, 0.062500,0.937500, 591 chr1 804108 804109 rs551746123 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 313.000000,4695.000000, 0.062500,0.937500, 591 chr1 804114 804115 rs9725068 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 4587.000000,421.000000, 0.915935,0.084065, 591 chr1 804118 804119 rs537050962 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4686.000000,322.000000, 0.935703,0.064297, 591 chr1 804134 804135 rs553317956 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4689.000000,319.000000, 0.936302,0.063698, 591 chr1 804151 804152 rs573479201 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 319.000000,4689.000000, 0.063698,0.936302, 591 chr1 804167 804168 rs545418299 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 324.000000,4684.000000, 0.064696,0.935304, 591 chr1 804179 804180 rs372180314 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,T, 4684.000000,324.000000, 0.935304,0.064696, 591 chr1 804187 804188 rs376110660 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 324.000000,4684.000000, 0.064696,0.935304, 591 chr1 804268 804269 rs145942548 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 93.000000,4915.000000, 0.018570,0.981430, 591 chr1 804305 804306 rs139794146 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, 591 chr1 804539 804540 rs11240778 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop 591 chr1 804596 804597 rs532824320 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 704.000000,4304.000000, 0.140575,0.859425, 591 chr1 804758 804759 rs7526310 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4037.000000,971.000000, 0.806110,0.193890, 591 chr1 805108 805109 rs112221884 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 591 chr1 805497 805498 rs150739247 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 591 chr1 805555 805556 rs72631880 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 868.000000,4140.000000, 0.173323,0.826677, maf-5-some-pop,maf-5-all-pops 591 chr1 805966 805967 rs139376235 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 591 chr1 806110 806111 rs12088187 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 591 chr1 806522 806523 rs145431683 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, 591 chr1 807038 807039 rs117292337 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 591 chr1 807302 807302 rs140363434 0 + - - -/T genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,GMI,PJP, 2 -,T, 1957.000000,3051.000000, 0.390775,0.609225, 591 chr1 807511 807512 rs10751454 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 591 chr1 807760 807761 rs4951932 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 5008.000000,0.000000, 1.000000,0.000000, 591 chr1 808024 808025 rs148111798 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 591 chr1 808222 808223 rs4951933 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,WI_SSAHASNP, 2 C,G, 2264.000000,2744.000000, 0.452077,0.547923, 591 chr1 808234 808235 rs150350890 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 591 chr1 808258 808259 rs137981877 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4604.000000,404.000000, 0.919329,0.080671, 591 chr1 808288 808289 rs113532475 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 A,T, 4105.000000,903.000000, 0.819688,0.180312, 591 chr1 808521 808522 rs6690115 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,BUSHMAN, 2 A,G, 4904.000000,104.000000, 0.979233,0.020767, 591 chr1 808526 808527 rs577246998 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, 591 chr1 808529 808530 rs189252564 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 591 chr1 808531 808532 rs192467702 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 591 chr1 808630 808631 rs11240779 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2271.000000,2737.000000, 0.453474,0.546526, maf-5-some-pop 591 chr1 808921 808922 rs6594027 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, 591 chr1 808927 808928 rs11240780 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSAHASNP,SSMP, 2 C,T, 2743.000000,2265.000000, 0.547724,0.452276, maf-5-some-pop,maf-5-all-pops 591 chr1 809236 809237 rs200657693 0 + C C C/G genomic single by-cluster,by-frequency 0.065688 0.168906 intron exact 1 NonIntegerChromCount 2 BILGI_BIOE,CLINSEQ_SNP, 2 C,G, 423.108002,14.892000, 0.966000,0.034000, 591 chr1 809260 809261 rs202083165 0 + C C C/T genomic single by-cluster,by-frequency 0.025662 0.110329 intron exact 1 NonIntegerChromCount 2 BILGI_BIOE,CLINSEQ_SNP, 2 C,T, 373.085999,4.914000, 0.987000,0.013000, 591 chr1 809699 809700 rs114598413 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 591 chr1 809875 809876 rs57181708 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4158.000000,850.000000, 0.830272,0.169728, maf-5-some-pop 591 chr1 810028 810029 rs116634681 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 591 chr1 810279 810280 rs113665055 0 + G G G/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4939.000000,69.000000, 0.986222,0.013778, 591 chr1 810285 810286 rs28410559 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1512.000000,3496.000000, 0.301917,0.698083, maf-5-some-pop,maf-5-all-pops 591 chr1 810647 810648 rs117446482 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, 591 chr1 810671 810672 rs117830343 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 591 chr1 810738 810739 rs140958338 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 591 chr1 810779 810780 rs58686784 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 838.000000,4170.000000, 0.167332,0.832668, 591 chr1 810798 810799 rs148586655 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 591 chr1 810897 810900 rs201133668 0 + TTC TTC -/TTC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,TTC, 82.000000,4926.000000, 0.016374,0.983626, 591 chr1 811135 811136 rs114224245 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,G, 139.000000,4869.000000, 0.027756,0.972244, 591 chr1 811235 811236 rs183361348 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, 591 chr1 811734 811735 rs114617474 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 15.000000,225.000000, 0.062500,0.937500, maf-5-some-pop,maf-5-all-pops 591 chr1 812221 812222 rs146711189 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4923.000000,85.000000, 0.983027,0.016973, 591 chr1 812266 812267 rs7541694 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 591 chr1 812742 812743 rs6605064 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3956.000000,1052.000000, 0.789936,0.210064, maf-5-some-pop 591 chr1 812750 812751 rs4246500 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop 591 chr1 812975 812976 rs28520213 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSAHASNP, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, 591 chr1 813033 813034 rs59771807 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 591 chr1 813167 813168 rs142197506 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 591 chr1 813211 813212 rs139476558 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, 591 chr1 813333 813334 rs144316595 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 4941.000000,67.000000, 0.986621,0.013379, 591 chr1 813339 813340 rs115626508 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 591 chr1 813639 813640 rs4246499 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 1506.000000,3502.000000, 0.300719,0.699281, 591 chr1 813962 813963 rs143343000 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 591 chr1 814027 814028 rs541279642 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 591 chr1 814044 814045 rs28483835 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,GMI,HGSV,SSAHASNP,SSMP, 2 C,T, 3945.000000,1063.000000, 0.787740,0.212260, 591 chr1 814214 814215 rs4468103 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BCMHGSC_JDW,GMI,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 3307.000000,1701.000000, 0.660343,0.339657, 591 chr1 814296 814297 rs72888851 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,GMI,SSMP, 2 A,T, 2419.000000,2589.000000, 0.483027,0.516973, 591 chr1 814299 814300 rs80022136 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,GMI,SSMP, 2 A,T, 2419.000000,2589.000000, 0.483027,0.516973, 591 chr1 814371 814375 rs150353320 0 + TGTT TGTT -/TGTT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,PJP, 2 -,TGTT, 2648.000000,2360.000000, 0.528754,0.471246, 591 chr1 814925 814926 rs75185188 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,ILLUMINA,SSMP, 2 A,G, 4889.000000,119.000000, 0.976238,0.023762, 591 chr1 814927 814928 rs193017223 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 88.000000,4920.000000, 0.017572,0.982428, 591 chr1 815137 815138 rs201597505 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 C,G, 4492.000000,516.000000, 0.896965,0.103035, 591 chr1 815138 815139 rs75056396 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 516.000000,4492.000000, 0.103035,0.896965, 591 chr1 815232 815233 rs373451052 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,T, 108.000000,4900.000000, 0.021566,0.978435, 591 chr1 815233 815234 rs375607464 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 A,C, 108.000000,4900.000000, 0.021566,0.978435, 591 chr1 815420 815421 rs72888853 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,GMI, 2 C,T, 181.000000,4827.000000, 0.036142,0.963858, 591 chr1 815421 815422 rs535862693 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4827.000000,181.000000, 0.963858,0.036142, 591 chr1 816215 816216 rs139209573 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4922.000000,86.000000, 0.982827,0.017173, 591 chr1 816257 816257 rs200555873 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,T, 4883.000000,125.000000, 0.975040,0.024960, 591 chr1 817233 817234 rs4970387 0 - A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 817594 817595 rs113580015 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 591 chr1 817966 817967 rs143695105 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,C, 127.000000,4881.000000, 0.025359,0.974641, 591 chr1 818186 818187 rs117379192 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 60.000000,4948.000000, 0.011981,0.988019, 591 chr1 819105 819106 rs57185426 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,BUSHMAN,ENSEMBL,GMI,HGSV,PJP,SSMP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 591 chr1 819121 819121 rs200893860 0 + - - -/AT genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER, 2 -,AT, 370.000000,4638.000000, 0.073882,0.926118, 591 chr1 819397 819398 rs61618401 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 G,T, 4923.000000,85.000000, 0.983027,0.016973, 591 chr1 819772 819773 rs75003292 0 + T T A/T genomic single unknown 0.152778 0.230321 unknown exact 1 1 ENSEMBL, 2 A,T, 1.000000,11.000000, 0.083333,0.916667, 591 chr1 821325 821329 rs138860880 0 + CAGT CAGT -/CAGT genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,BL,GMI,PJP,SSMP, 2 -,CAGT, 2046.000000,2962.000000, 0.408546,0.591454, 591 chr1 821709 821710 rs562897305 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 591 chr1 821862 821881 rs571898054 0 + ACAGCAGCTGTGCTGTGTT ACAGCAGCTGTGCTGTGTT -/ACAGCAGCTGTGCTGTGTT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,ACAGCAGCTGTGCTGTGTT, 85.000000,4923.000000, 0.016973,0.983027, 591 chr1 821886 821887 rs6677354 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 591 chr1 821925 821926 rs35660652 0 - C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,EVA-GONL,JMKIDD_LAB, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 591 chr1 821947 821948 rs6671445 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 C,T, 4637.000000,371.000000, 0.925919,0.074081, maf-5-some-pop,maf-5-all-pops 591 chr1 822271 822272 rs116301497 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 591 chr1 822380 822381 rs116091741 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 591 chr1 823089 823090 rs145315181 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, 591 chr1 823504 823505 rs13302980 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 C,T, 4378.000000,630.000000, 0.874201,0.125799, 591 chr1 823542 823543 rs556083391 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 823789 823790 rs143626389 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 591 chr1 823822 823824 rs566040758 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GA, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 823947 823948 rs565871206 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 591 chr1 824397 824398 rs7538305 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,WI_SSAHASNP, 2 A,C, 4065.000000,943.000000, 0.811701,0.188299, 591 chr1 824533 824534 rs141372940 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 824592 824593 rs75926297 0 + C C A/C genomic single by-cluster,by-frequency 0.375 0.216506 unknown exact 1 4 ENSEMBL,GMI,MPI_MOLGEN,PJP, 2 A,C, 9.000000,3.000000, 0.750000,0.250000, 591 chr1 824690 824691 rs75026264 0 + G G A/G genomic single by-cluster,by-frequency 0.375 0.216506 unknown exact 1 6 BL,COMPLETE_GENOMICS,ENSEMBL,GMI,MPI_MOLGEN,PJP, 2 A,G, 12.000000,4.000000, 0.750000,0.250000, 591 chr1 824693 824694 rs78484413 0 + G G A/G genomic single by-cluster,by-frequency 0.489796 0.070696 unknown exact 1 3 COMPLETE_GENOMICS,ENSEMBL,GMI, 2 A,G, 6.000000,8.000000, 0.428571,0.571429, 591 chr1 824708 824709 rs75988466 0 + A A A/C genomic single by-frequency 0.375 0.216506 unknown exact 1 4 BL,ENSEMBL,GMI,PJP, 2 A,C, 9.000000,3.000000, 0.750000,0.250000, 591 chr1 824837 824838 rs79872378 0 + C C A/C genomic single by-cluster,by-frequency 0.459184 0.136902 unknown exact 1 3 COMPLETE_GENOMICS,ENSEMBL,GMI, 2 A,C, 9.000000,5.000000, 0.642857,0.357143, 591 chr1 824844 824845 rs74714520 0 + G G G/T genomic single by-cluster,by-frequency 0.489796 0.070696 unknown exact 1 3 COMPLETE_GENOMICS,ENSEMBL,GMI, 2 G,T, 6.000000,8.000000, 0.428571,0.571429, 591 chr1 824947 824948 rs79544309 0 + C C C/T genomic single by-frequency 0.444444 0.157135 unknown exact 1 3 ENSEMBL,GMI,PJP, 2 C,T, 8.000000,4.000000, 0.666667,0.333333, 591 chr1 825124 825125 rs58233623 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 A,C, 71.000000,4937.000000, 0.014177,0.985823, 591 chr1 825563 825564 rs536845741 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 591 chr1 825826 825826 rs369620271 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,EVA-GONL,SSMP, 2 -,A, 1011.000000,3997.000000, 0.201877,0.798123, 591 chr1 826134 826135 rs565374833 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 591 chr1 826509 826510 rs114967681 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 94.000000,4914.000000, 0.018770,0.981230, 591 chr1 827256 827257 rs140964025 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 591 chr1 827260 827261 rs6703274 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 591 chr1 827266 827267 rs2879698 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 529.000000,4479.000000, 0.105631,0.894369, 591 chr1 827276 827277 rs4246498 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4658.000000,350.000000, 0.930112,0.069888, 591 chr1 827330 827331 rs111910870 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 591 chr1 827712 827712 rs200199951 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4920.000000,88.000000, 0.982428,0.017572, 591 chr1 828165 828166 rs13303117 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,G, 3904.000000,1104.000000, 0.779553,0.220447, 591 chr1 828174 828175 rs145350987 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 591 chr1 828467 828468 rs147656405 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 591 chr1 828668 828669 rs143274363 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4921.000000,87.000000, 0.982628,0.017372, 591 chr1 828739 828740 rs28541977 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,SSAHASNP, 2 A,G, 4918.000000,90.000000, 0.982029,0.017971, 591 chr1 828882 828883 rs55745762 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 614.000000,4394.000000, 0.122604,0.877396, maf-5-some-pop,maf-5-all-pops 591 chr1 829105 829106 rs144931816 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, 591 chr1 829220 829221 rs532186568 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4938.000000,70.000000, 0.986022,0.013978, 591 chr1 829332 829333 rs9778019 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, 591 chr1 829470 829471 rs141808817 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, 591 chr1 829636 829637 rs4437820 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 447.000000,4561.000000, 0.089257,0.910743, 591 chr1 829666 829667 rs7542092 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,WI_SSAHASNP, 2 A,C, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 591 chr1 830180 830181 rs28444699 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP, 2 A,G, 1546.000000,3462.000000, 0.308706,0.691294, 591 chr1 830358 830359 rs147496775 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, 591 chr1 830402 830403 rs140198156 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, 591 chr1 830454 830455 rs7535252 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,WI_SSAHASNP, 2 C,T, 95.000000,4913.000000, 0.018970,0.981030, 591 chr1 830777 830778 rs111952597 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,SSMP, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 591 chr1 830781 830782 rs549205911 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 591 chr1 830782 830783 rs111436366 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 G,T, 68.000000,4940.000000, 0.013578,0.986422, 591 chr1 830784 830785 rs535278004 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, 591 chr1 831026 831027 rs372366328 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, 591 chr1 831319 831320 rs556151501 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 79.000000,4929.000000, 0.015775,0.984225, 591 chr1 831908 831909 rs9697642 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1760.000000,3248.000000, 0.351438,0.648562, maf-5-some-pop,maf-5-all-pops 591 chr1 832065 832066 rs9697380 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 3327.000000,1681.000000, 0.664337,0.335663, 591 chr1 832111 832112 rs9697725 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3327.000000,1681.000000, 0.664337,0.335663, 591 chr1 832177 832178 rs13302934 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 A,G, 1681.000000,3327.000000, 0.335663,0.664337, 591 chr1 832358 832359 rs9697294 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4558.000000,450.000000, 0.910144,0.089856, 591 chr1 832359 832360 rs138451736 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 591 chr1 832808 832809 rs147513871 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 832917 832918 rs28765502 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 1730.000000,3278.000000, 0.345447,0.654553, maf-5-some-pop,maf-5-all-pops 591 chr1 833172 833172 rs113551494 0 + - - -/CGAA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,CGAA, 3359.000000,1649.000000, 0.670727,0.329273, 591 chr1 833222 833223 rs13303211 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3408.000000,1600.000000, 0.680511,0.319489, maf-5-some-pop,maf-5-all-pops 591 chr1 833301 833302 rs28752186 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3408.000000,1600.000000, 0.680511,0.319489, 591 chr1 833420 833421 rs115244455 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 591 chr1 833615 833616 rs139633901 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 591 chr1 833662 833663 rs28416910 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3402.000000,1606.000000, 0.679313,0.320687, 591 chr1 833823 833824 rs28484835 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1599.000000,3409.000000, 0.319289,0.680711, maf-5-some-pop,maf-5-all-pops 591 chr1 833926 833927 rs28593608 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 939.000000,4069.000000, 0.187500,0.812500, maf-5-some-pop,maf-5-all-pops 591 chr1 834055 834056 rs28482280 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4273.000000,735.000000, 0.853235,0.146765, 591 chr1 834197 834198 rs28385272 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 845.000000,4163.000000, 0.168730,0.831270, maf-5-some-pop,maf-5-all-pops 591 chr1 834262 834263 rs143031236 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 591 chr1 834491 834492 rs141250542 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 591 chr1 834613 834614 rs146951321 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, 591 chr1 834752 834753 rs4411088 0 - G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 591 chr1 834831 834832 rs4411087 0 - G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 834955 834956 rs7518581 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 547.000000,4461.000000, 0.109225,0.890775, maf-5-some-pop 591 chr1 834990 834991 rs116090519 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 591 chr1 834998 834999 rs28570054 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1003.000000,4005.000000, 0.200280,0.799720, maf-5-some-pop,maf-5-all-pops 591 chr1 835241 835242 rs77180534 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 591 chr1 835490 835491 rs112672359 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 591 chr1 835741 835742 rs114181266 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop,maf-5-all-pops 591 chr1 835806 835809 rs199507623 0 + GGA GGA -/GGA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GGA, 61.000000,4947.000000, 0.012180,0.987819, 591 chr1 835839 835840 rs28514991 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 591 chr1 836528 836529 rs28731045 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4174.000000,834.000000, 0.833466,0.166534, maf-5-some-pop,maf-5-all-pops 591 chr1 836895 836896 rs28705752 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2083.000000,2925.000000, 0.415935,0.584065, maf-5-some-pop,maf-5-all-pops 591 chr1 836923 836924 rs72890788 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 832.000000,4176.000000, 0.166134,0.833866, maf-5-some-pop,maf-5-all-pops 591 chr1 837013 837014 rs116738141 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 591 chr1 837191 837192 rs57494724 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3716.000000,1292.000000, 0.742013,0.257987, maf-5-some-pop 591 chr1 837302 837303 rs115809836 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 837416 837417 rs77916225 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 591 chr1 837427 837428 rs111363967 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 591 chr1 837656 837657 rs149737509 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,G, 86.000000,4922.000000, 0.017173,0.982827, 591 chr1 838259 838260 rs115305660 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 591 chr1 838329 838329 rs144685080 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,C, 4145.000000,863.000000, 0.827676,0.172324, 591 chr1 838664 838665 rs28678693 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 591 chr1 838731 838732 rs28477624 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, 591 chr1 838829 838830 rs77144359 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 G,T, 4901.000000,107.000000, 0.978634,0.021366, 591 chr1 838889 838890 rs28437697 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop 591 chr1 838915 838916 rs28539852 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4830.000000,178.000000, 0.964457,0.035543, maf-5-some-pop 591 chr1 838930 838931 rs7523690 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3739.000000,1269.000000, 0.746605,0.253395, maf-5-some-pop,maf-5-all-pops 591 chr1 839102 839103 rs28562941 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3135.000000,1873.000000, 0.625998,0.374002, maf-5-some-pop,maf-5-all-pops 591 chr1 839460 839461 rs78238606 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop,maf-5-all-pops 591 chr1 839494 839495 rs113341842 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop 591 chr1 839528 839529 rs114543760 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop,maf-5-all-pops 591 chr1 839899 839900 rs551089240 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 151.000000,4857.000000, 0.030152,0.969848, 591 chr1 840038 840039 rs562868505 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 153.000000,4855.000000, 0.030551,0.969449, 591 chr1 840042 840043 rs531646385 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 591 chr1 840326 840327 rs28625089 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSAHASNP,SSMP, 2 A,G, 797.000000,4211.000000, 0.159145,0.840855, maf-5-some-pop,maf-5-all-pops 591 chr1 840352 840353 rs547535649 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 72.000000,4936.000000, 0.014377,0.985623, 591 chr1 841055 841056 rs79276155 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop 591 chr1 841084 841085 rs1574243 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 3324.000000,1684.000000, 0.663738,0.336262, maf-5-some-pop,maf-5-all-pops 591 chr1 841590 841591 rs114464092 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 591 chr1 842012 842013 rs7419119 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 G,T, 929.000000,4079.000000, 0.185503,0.814497, maf-5-some-pop,maf-5-all-pops 591 chr1 842057 842057 rs149865693 0 + - - -/AACTCAGCTGCCTCTCCCCTTC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,AACTCAGCTGCCTCTCCCCTTC, 2968.000000,2040.000000, 0.592652,0.407348, 591 chr1 842249 842250 rs148658266 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, 591 chr1 842361 842362 rs28540380 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3910.000000,1098.000000, 0.780751,0.219249, 591 chr1 842387 842387 rs200492131 0 + - - -/CC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CC, 4899.000000,109.000000, 0.978235,0.021765, 591 chr1 842388 842388 rs571161612 0 + - - -/CCGCAGGA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CCGCAGGA, 4899.000000,109.000000, 0.978235,0.021765, 591 chr1 842536 842537 rs59131686 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,HGSV, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 591 chr1 842616 842617 rs111389427 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,PJP,SSMP, 2 -,A, 2117.000000,2891.000000, 0.422724,0.577276, 591 chr1 842651 842652 rs58666659 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 591 chr1 842824 842825 rs7519340 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 591 chr1 843365 843366 rs28440803 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,T, 4767.000000,241.000000, 0.951877,0.048123, maf-5-some-pop 591 chr1 843404 843405 rs11516185 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3128.000000,1880.000000, 0.624601,0.375399, maf-5-some-pop,maf-5-all-pops 591 chr1 843907 843908 rs528303756 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 591 chr1 843911 843912 rs551374321 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 591 chr1 843940 843940 rs199636838 0 + - - -/GAT genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,GMI,LUNTER,WARNICH_LAB, 2 -,GAT, 593.000000,4415.000000, 0.118411,0.881589, 591 chr1 844299 844300 rs61769713 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,G, 915.000000,4093.000000, 0.182708,0.817292, maf-5-some-pop,maf-5-all-pops 591 chr1 844323 844324 rs61769714 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 3704.000000,1304.000000, 0.739617,0.260383, maf-5-some-pop,maf-5-all-pops 591 chr1 844342 844343 rs61769715 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 2962.000000,2046.000000, 0.591454,0.408546, 591 chr1 844475 844476 rs368849675 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 1132.000000,3876.000000, 0.226038,0.773962, 591 chr1 844673 844674 rs528265132 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, 591 chr1 844812 844813 rs185360290 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 2083.000000,2925.000000, 0.415935,0.584065, 591 chr1 844889 844889 rs541630632 0 + - - -/G genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,G, 4538.000000,470.000000, 0.906150,0.093850, 591 chr1 845125 845126 rs367857624 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 591 chr1 845272 845273 rs117039017 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop,maf-5-all-pops 591 chr1 845282 845283 rs7366404 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SSMP,WI_SSAHASNP, 2 G,T, 1212.000000,3796.000000, 0.242013,0.757987, maf-5-some-pop,maf-5-all-pops 591 chr1 845310 845311 rs145001858 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 591 chr1 845508 845509 rs565071104 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 528.000000,4480.000000, 0.105431,0.894569, 591 chr1 845592 845593 rs191964043 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, 591 chr1 845634 845635 rs117086422 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4214.000000,794.000000, 0.841454,0.158546, maf-5-some-pop,maf-5-all-pops 591 chr1 845937 845938 rs57760052 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SSMP, 2 A,G, 1820.000000,3188.000000, 0.363419,0.636581, maf-5-some-pop,maf-5-all-pops 591 chr1 846077 846078 rs28612348 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4198.000000,810.000000, 0.838259,0.161741, maf-5-some-pop,maf-5-all-pops 591 chr1 846320 846321 rs115354484 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 98.000000,4910.000000, 0.019569,0.980431, 591 chr1 846397 846398 rs58781670 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1778.000000,3230.000000, 0.355032,0.644968, maf-5-some-pop,maf-5-all-pops 591 chr1 846464 846465 rs60454217 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop 591 chr1 846542 846543 rs79396034 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4297.000000,711.000000, 0.858027,0.141973, maf-5-some-pop,maf-5-all-pops 591 chr1 846585 846586 rs116802349 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 591 chr1 846807 846808 rs4475691 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3732.000000,1276.000000, 0.745208,0.254792, maf-5-some-pop,maf-5-all-pops 591 chr1 846853 846854 rs111957712 0 + G G A/G genomic single unknown 0 0 splice-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 591 chr1 846863 846864 rs950122 0 - G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 847040 847041 rs59518089 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, 591 chr1 847140 847141 rs28546248 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSAHASNP, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, 591 chr1 847296 847297 rs11507768 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,G, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop,maf-5-all-pops 591 chr1 847490 847491 rs28407778 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1262.000000,3746.000000, 0.251997,0.748003, maf-5-some-pop,maf-5-all-pops 591 chr1 847657 847658 rs79776465 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 591 chr1 848022 848023 rs144407116 0 + C C A/C genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 591 chr1 848089 848090 rs4246505 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 857.000000,4151.000000, 0.171126,0.828874, maf-5-some-pop,maf-5-all-pops 591 chr1 848094 848094 rs201096503 0 + - - -/GCCCCTCCT genomic insertion unknown 0 0 ncRNA between 1 1 1000GENOMES, 2 -,GCCCCTCCT, 4900.000000,108.000000, 0.978435,0.021566, 591 chr1 848296 848297 rs114642624 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 591 chr1 848357 848358 rs116301143 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 591 chr1 848444 848445 rs4626817 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 14 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 1255.000000,3753.000000, 0.250599,0.749401, maf-5-some-pop,maf-5-all-pops 591 chr1 848455 848456 rs11507767 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3742.000000,1266.000000, 0.747204,0.252796, maf-5-some-pop,maf-5-all-pops 591 chr1 848848 848849 rs76923306 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 591 chr1 849439 849440 rs79376265 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop,maf-5-all-pops 591 chr1 849440 849441 rs28495095 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 4653.000000,355.000000, 0.929113,0.070887, maf-5-some-pop,maf-5-all-pops 591 chr1 849523 849524 rs114473058 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 591 chr1 849552 849553 rs6685456 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 591 chr1 849812 849813 rs112774075 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop,maf-5-all-pops 591 chr1 849863 849863 rs140295539 0 + - - -/ACTGCCCAGCTC genomic insertion unknown 0 0 ncRNA between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,ACTGCCCAGCTC, 3743.000000,1265.000000, 0.747404,0.252596, 591 chr1 849906 849907 rs57668572 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 4599.000000,409.000000, 0.918331,0.081669, maf-5-some-pop,maf-5-all-pops 591 chr1 849997 849998 rs13303222 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 884.000000,4124.000000, 0.176518,0.823482, maf-5-some-pop,maf-5-all-pops 591 chr1 850061 850062 rs28723578 0 + A A A/T genomic single unknown 0 0 ncRNA exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3735.000000,1273.000000, 0.745807,0.254193, maf-5-some-pop,maf-5-all-pops 591 chr1 850114 850115 rs60824793 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 591 chr1 850122 850123 rs28622257 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4161.000000,847.000000, 0.830871,0.169129, 591 chr1 850217 850218 rs6664536 0 + T T A/T genomic single unknown 0 0 near-gene-3 exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1729.000000,3279.000000, 0.345248,0.654752, 591 chr1 850323 850324 rs143945568 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, 591 chr1 850370 850371 rs6679046 0 + G G G/T genomic single unknown 0 0 near-gene-3 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2460.000000,2548.000000, 0.491214,0.508786, maf-5-some-pop,maf-5-all-pops 591 chr1 850527 850528 rs114889920 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4696.000000,312.000000, 0.937700,0.062300, maf-5-some-pop 591 chr1 850779 850780 rs6657440 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2202.000000,2806.000000, 0.439696,0.560304, maf-5-some-pop,maf-5-all-pops 591 chr1 851029 851030 rs79709025 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop,maf-5-all-pops 591 chr1 851189 851190 rs28609852 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop,maf-5-all-pops 591 chr1 851203 851204 rs28552953 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1335.000000,3673.000000, 0.266573,0.733427, maf-5-some-pop,maf-5-all-pops 591 chr1 851389 851390 rs72631889 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,ILLUMINA, 2 G,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 591 chr1 851753 851754 rs545743734 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,G, 61.000000,4947.000000, 0.012180,0.987819, 591 chr1 851755 851756 rs556146321 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 591 chr1 851760 851761 rs541951052 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 591 chr1 851765 851766 rs527930265 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 591 chr1 852062 852063 rs28436996 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 591 chr1 852132 852133 rs7518702 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1358.000000,3650.000000, 0.271166,0.728834, maf-5-some-pop,maf-5-all-pops 591 chr1 852442 852443 rs7531543 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,C, 4650.000000,358.000000, 0.928514,0.071486, maf-5-some-pop,maf-5-all-pops 591 chr1 852501 852502 rs116263168 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, 591 chr1 852516 852517 rs115083420 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, 591 chr1 852649 852650 rs2272758 0 - G G A/C/G/T genomic single unknown 0 0 ncRNA exact 1 SingleClassQuadAllelic 4 1000GENOMES,GMI,JMKIDD_LAB,YUSUKE, 4 A,C,G,T, 237.000000,4771.000000,4771.000000,237.000000, 0.023662,0.476338,0.476338,0.023662, maf-5-some-pop,maf-5-all-pops 591 chr1 852663 852664 rs28605311 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4137.000000,871.000000, 0.826078,0.173922, maf-5-some-pop,maf-5-all-pops 591 chr1 852757 852758 rs4970462 0 - G G C/G genomic single unknown 0 0 near-gene-3 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 852874 852875 rs13303369 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2533.000000,2475.000000, 0.505791,0.494209, maf-5-some-pop,maf-5-all-pops 591 chr1 853088 853089 rs78738176 0 - G G C/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 591 chr1 853129 853130 rs112599122 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop,maf-5-all-pops 591 chr1 853266 853267 rs112944197 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4617.000000,391.000000, 0.921925,0.078075, maf-5-some-pop,maf-5-all-pops 591 chr1 853487 853488 rs77644389 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 310.000000,4698.000000, 0.061901,0.938099, maf-5-some-pop 591 chr1 853953 853954 rs1806509 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,C, 2482.000000,2526.000000, 0.495607,0.504393, maf-5-some-pop 591 chr1 854167 854168 rs79188446 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop,maf-5-all-pops 591 chr1 854249 854250 rs7537756 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3928.000000,1080.000000, 0.784345,0.215655, maf-5-some-pop,maf-5-all-pops 591 chr1 854428 854429 rs72902552 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop,maf-5-all-pops 591 chr1 854507 854508 rs111797808 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 591 chr1 854776 854777 rs13303019 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1693.000000,3315.000000, 0.338059,0.661941, maf-5-some-pop,maf-5-all-pops 591 chr1 854977 854978 rs13303057 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 591 chr1 855074 855075 rs6673914 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1722.000000,3286.000000, 0.343850,0.656150, maf-5-some-pop,maf-5-all-pops 591 chr1 855162 855163 rs143596056 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 591 chr1 855167 855168 rs78128413 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 801.000000,4207.000000, 0.159944,0.840056, maf-5-some-pop,maf-5-all-pops 591 chr1 855251 855252 rs115439722 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 591 chr1 855358 855359 rs113648919 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop,maf-5-all-pops 591 chr1 855635 855638 rs77712898 0 + CTT CTT -/CTT genomic deletion unknown 0 0 near-gene-5 range 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,CTT, 306.000000,4702.000000, 0.061102,0.938898, 591 chr1 855773 855774 rs77595185 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 307.000000,4701.000000, 0.061302,0.938698, maf-5-some-pop 591 chr1 855877 855878 rs117282503 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 591 chr1 855948 855949 rs77568453 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop 591 chr1 856040 856041 rs61769717 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 831.000000,4177.000000, 0.165935,0.834065, maf-5-some-pop,maf-5-all-pops 591 chr1 856041 856042 rs115560414 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 591 chr1 856098 856099 rs28534711 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP, 2 G,T, 1757.000000,3251.000000, 0.350839,0.649161, maf-5-some-pop,maf-5-all-pops 591 chr1 856107 856108 rs28742275 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3251.000000,1757.000000, 0.649161,0.350839, maf-5-some-pop,maf-5-all-pops 591 chr1 856328 856329 rs7414599 0 + C C C/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4094.000000,914.000000, 0.817492,0.182508, maf-5-some-pop,maf-5-all-pops 591 chr1 856351 856352 rs75421909 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 591 chr1 856475 856476 rs4040605 0 + A A A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2487.000000,2521.000000, 0.496605,0.503395, maf-5-some-pop,maf-5-all-pops 591 chr1 856513 856514 rs530879139 0 + C C -/C genomic deletion unknown 0 0 near-gene-3,near-gene-5 exact 1 1 1000GENOMES, 2 -,C, 106.000000,4902.000000, 0.021166,0.978834, 591 chr1 856582 856583 rs141671872 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 591 chr1 856998 856999 rs115003957 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop,maf-5-all-pops 591 chr1 857176 857177 rs28409649 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1308.000000,3700.000000, 0.261182,0.738818, maf-5-some-pop,maf-5-all-pops 591 chr1 857318 857318 rs144110716 0 + - - -/GAGT genomic insertion unknown 0 0 ncRNA between 1 2 1000GENOMES,LUNTER, 2 -,GAGT, 4710.000000,298.000000, 0.940495,0.059505, 591 chr1 857442 857443 rs56663360 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4239.000000,769.000000, 0.846446,0.153554, maf-5-some-pop,maf-5-all-pops 591 chr1 857652 857653 rs59192718 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop,maf-5-all-pops 591 chr1 857727 857728 rs6689107 0 + T T G/T genomic single unknown 0 0 ncRNA exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 591 chr1 857827 857828 rs6694982 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop 591 chr1 858148 858149 rs77520260 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop,maf-5-all-pops 591 chr1 859205 859206 rs188534988 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 591 chr1 859334 859335 rs576651754 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 198.000000,4810.000000, 0.039537,0.960463, 591 chr1 859369 859370 rs542192573 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 78.000000,4930.000000, 0.015575,0.984425, 591 chr1 859403 859404 rs71509444 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 C,G, 1596.000000,3412.000000, 0.318690,0.681310, 591 chr1 859684 859685 rs111572704 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 837.000000,4171.000000, 0.167133,0.832867, 591 chr1 859689 859690 rs71509445 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,HUMANGENOME_JCVI,SSMP, 2 C,G, 1541.000000,3467.000000, 0.307708,0.692292, 591 chr1 859700 859701 rs71509446 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,G, 1541.000000,3467.000000, 0.307708,0.692292, 591 chr1 859912 859913 rs112703963 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BCM-HGSC-SUB,SSMP, 2 A,G, 1253.000000,3755.000000, 0.250200,0.749800, 591 chr1 860415 860416 rs61464428 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP, 2 A,G, 2561.000000,2447.000000, 0.511382,0.488618, maf-5-some-pop,maf-5-all-pops 591 chr1 860460 860461 rs57465118 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,SSMP, 2 A,G, 3417.000000,1591.000000, 0.682308,0.317692, maf-5-some-pop 591 chr1 860503 860504 rs78033073 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop,maf-5-all-pops 591 chr1 860520 860521 rs57924093 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP, 2 A,C, 3403.000000,1605.000000, 0.679513,0.320487, maf-5-some-pop 591 chr1 860687 860688 rs60837925 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,SSMP, 2 A,G, 2530.000000,2478.000000, 0.505192,0.494808, maf-5-some-pop,maf-5-all-pops 591 chr1 860795 860799 rs558665183 0 + TGCG TGCG -/TGCG genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,TGCG, 3430.000000,1578.000000, 0.684904,0.315096, 591 chr1 860853 860854 rs57816555 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,T, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop,maf-5-all-pops 591 chr1 860856 860857 rs141034733 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 591 chr1 860955 860956 rs28632468 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSAHASNP, 2 C,G, 4880.000000,128.000000, 0.974441,0.025559, 591 chr1 860956 860957 rs28729864 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSAHASNP, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, 591 chr1 861007 861008 rs28521172 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 C,G, 3442.000000,1566.000000, 0.687300,0.312700, maf-5-some-pop 591 chr1 861629 861630 rs2879816 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2533.000000,2475.000000, 0.505791,0.494209, maf-5-some-pop,maf-5-all-pops 591 chr1 861807 861808 rs13302982 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1591.000000,3417.000000, 0.317692,0.682308, maf-5-some-pop 591 chr1 862123 862124 rs13303101 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1589.000000,3419.000000, 0.317292,0.682708, maf-5-some-pop 591 chr1 862185 862186 rs74442310 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop,maf-5-all-pops 591 chr1 862382 862383 rs6680268 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1594.000000,3414.000000, 0.318291,0.681709, maf-5-some-pop 591 chr1 862667 862668 rs114644749 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 591 chr1 862682 862683 rs115239915 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 268.000000,4740.000000, 0.053514,0.946486, maf-5-some-pop,maf-5-all-pops 591 chr1 862822 862822 rs553391854 0 + - - -/C genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,C, 4803.000000,205.000000, 0.959065,0.040934, 591 chr1 862865 862866 rs3892970 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2621.000000,2387.000000, 0.523363,0.476637, maf-5-some-pop,maf-5-all-pops 591 chr1 863123 863124 rs4040604 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1602.000000,3406.000000, 0.319888,0.680112, maf-5-some-pop 591 chr1 863137 863138 rs79585663 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4462.000000,546.000000, 0.890974,0.109026, maf-5-some-pop,maf-5-all-pops 591 chr1 863500 863501 rs28649395 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSAHASNP, 2 C,T, 410.000000,4598.000000, 0.081869,0.918131, 591 chr1 863507 863508 rs7410984 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3842.000000,1166.000000, 0.767173,0.232827, 591 chr1 863510 863511 rs28626846 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1366.000000,3642.000000, 0.272764,0.727236, 591 chr1 863520 863521 rs147534364 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4901.000000,107.000000, 0.978634,0.021366, 591 chr1 863547 863548 rs112703377 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 591 chr1 863555 863556 rs7410998 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4558.000000,450.000000, 0.910144,0.089856, 591 chr1 863568 863569 rs150604687 0 + C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 2 1000GENOMES,EVA-GONL, 4 A,C,G,T, 85.000000,4822.000000,80.000000,21.000000, 0.016973,0.962860,0.015974,0.004193, rs-cluster-nonoverlapping-alleles 591 chr1 863573 863574 rs544200569 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 591 chr1 863580 863581 rs532165946 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 591 chr1 863581 863582 rs7417973 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,HGSV,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4639.000000,369.000000, 0.926318,0.073682, 591 chr1 863588 863589 rs568159093 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, 591 chr1 863589 863590 rs61769724 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL, 2 A,G, 275.000000,4733.000000, 0.054912,0.945088, 591 chr1 863596 863596 rs564213052 0 + - - -/C genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,C, 4444.000000,564.000000, 0.887380,0.112620, 591 chr1 863602 863603 rs112468011 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,T, 182.000000,4826.000000, 0.036342,0.963658, 591 chr1 863631 863632 rs28403979 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3604.000000,1404.000000, 0.719649,0.280351, 591 chr1 863640 863641 rs28569249 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1408.000000,3600.000000, 0.281150,0.718850, 591 chr1 863643 863644 rs28739566 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1497.000000,3511.000000, 0.298922,0.701078, 591 chr1 863688 863689 rs7417994 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1052.000000,3956.000000, 0.210064,0.789936, 591 chr1 863977 863978 rs74047403 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 497.000000,4511.000000, 0.099241,0.900759, maf-5-some-pop 591 chr1 864001 864002 rs1806501 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TSC-CSHL, 2 C,G, 810.000000,4198.000000, 0.161741,0.838259, maf-5-some-pop,maf-5-all-pops 591 chr1 864240 864241 rs74047404 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop,maf-5-all-pops 591 chr1 864489 864490 rs55678698 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,HGSV,ILLUMINA, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 591 chr1 864614 864615 rs9988193 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 591 chr1 864725 864726 rs2340590 0 - T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 591 chr1 865218 865219 rs75551395 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 815.000000,4193.000000, 0.162740,0.837260, maf-5-some-pop,maf-5-all-pops 591 chr1 865260 865261 rs114608936 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 591 chr1 865366 865367 rs75294478 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 G,T, 4742.000000,266.000000, 0.946885,0.053115, maf-5-some-pop,maf-5-all-pops 591 chr1 865583 865584 rs148711625 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 5 1000GENOMES,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 591 chr1 865693 865694 rs9988179 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 9 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,WUGSC_SSAHASNP, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 591 chr1 866318 866319 rs9988021 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WUGSC_SSAHASNP, 2 A,G, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop 591 chr1 866511 866511 rs375757231 0 + - - -/CCCT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BL,LUNTER, 2 -,CCCT, 4262.000000,746.000000, 0.851038,0.148962, 591 chr1 866905 866906 rs28612797 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SSAHASNP,TISHKOFF, 2 A,G, 271.000000,4737.000000, 0.054113,0.945887, maf-5-some-pop,maf-5-all-pops 591 chr1 866937 866938 rs74047407 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1396.000000,3612.000000, 0.278754,0.721246, maf-5-some-pop,maf-5-all-pops 591 chr1 867164 867165 rs113954963 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 591 chr1 867369 867370 rs111442183 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop,maf-5-all-pops 591 chr1 867417 867418 rs111274533 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop,maf-5-all-pops 591 chr1 867441 867442 rs74047409 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, maf-5-some-pop,maf-5-all-pops 591 chr1 867583 867584 rs2341360 0 - A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 591 chr1 867634 867635 rs76964081 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop 591 chr1 868111 868112 rs115640463 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 591 chr1 868355 868356 rs7418554 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_JCM,TISHKOFF, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop,maf-5-all-pops 591 chr1 868403 868404 rs13302914 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 340.000000,4668.000000, 0.067891,0.932109, 591 chr1 868417 868418 rs28546443 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop,maf-5-all-pops 591 chr1 868780 868781 rs111966739 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop,maf-5-all-pops 591 chr1 868790 868791 rs13303003 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 563.000000,4445.000000, 0.112420,0.887580, maf-5-some-pop 591 chr1 868839 868840 rs28532704 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ENSEMBL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop,maf-5-all-pops 591 chr1 868860 868861 rs111819742 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop,maf-5-all-pops 591 chr1 868890 868891 rs13303066 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 591 chr1 868928 868928 rs56367715 0 + - - -/G genomic insertion unknown 0 0 intron between 1 9 1000GENOMES,BGI,BL,EVA-GONL,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 2451.000000,2557.000000, 0.489417,0.510583, 591 chr1 868980 868981 rs13303037 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1581.000000,3427.000000, 0.315695,0.684305, maf-5-some-pop 591 chr1 869032 869033 rs116296342 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop,maf-5-all-pops 591 chr1 869070 869071 rs115552829 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 591 chr1 869244 869244 rs200586552 0 + - - -/AG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,AG, 4687.000000,321.000000, 0.935903,0.064097, 591 chr1 869248 869249 rs115526822 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop,maf-5-all-pops 591 chr1 869302 869303 rs113171913 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4120.000000,888.000000, 0.822684,0.177316, maf-5-some-pop,maf-5-all-pops 591 chr1 869322 869323 rs13303207 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop 591 chr1 869368 869369 rs13303328 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP, 2 G,T, 196.000000,4812.000000, 0.039137,0.960863, 591 chr1 869372 869373 rs13303330 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 C,G, 4812.000000,196.000000, 0.960863,0.039137, 591 chr1 869956 869957 rs566613893 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 83.000000,4925.000000, 0.016573,0.983427, 591 chr1 870320 870321 rs144561831 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4723.000000,285.000000, 0.943091,0.056909, 591 chr1 870644 870645 rs28576697 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP, 2 C,T, 960.000000,4048.000000, 0.191693,0.808307, maf-5-some-pop 591 chr1 870650 870651 rs76294260 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop 591 chr1 870753 870754 rs74047411 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 591 chr1 870765 870766 rs77579483 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4538.000000,470.000000, 0.906150,0.093850, maf-5-some-pop,maf-5-all-pops 591 chr1 870806 870806 rs113002845 0 + - - -/GGAGCTCCTCT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,GGAGCTCCTCT, 3946.000000,1062.000000, 0.787939,0.212061, 591 chr1 870810 870811 rs56024075 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,HGSV,TISHKOFF, 2 A,G, 451.000000,4557.000000, 0.090056,0.909944, 591 chr1 870902 870903 rs13303094 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop 591 chr1 871512 871513 rs114994266 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 591 chr1 871730 871731 rs550134676 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 591 chr1 871803 871804 rs533551753 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 591 chr1 871808 871812 rs200964180 0 + CGGT CGGT -/CGGT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CGGT, 373.000000,4635.000000, 0.074481,0.925519, 591 chr1 871892 871893 rs112344117 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 591 chr1 872086 872087 rs78308511 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop,maf-5-all-pops 591 chr1 872090 872091 rs77614634 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop,maf-5-all-pops 591 chr1 872351 872352 rs1806780 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1763.000000,3245.000000, 0.352037,0.647963, maf-5-some-pop,maf-5-all-pops 591 chr1 872615 872616 rs114890122 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 591 chr1 872951 872952 rs76723341 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop,maf-5-all-pops 591 chr1 873393 873394 rs1110051 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3653.000000,1355.000000, 0.729433,0.270567, maf-5-some-pop,maf-5-all-pops 591 chr1 873461 873462 rs116804576 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 591 chr1 873557 873558 rs1110052 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 591 chr1 873858 873859 rs28525584 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 G,T, 4549.000000,459.000000, 0.908347,0.091653, maf-5-some-pop,maf-5-all-pops 591 chr1 874033 874034 rs75790500 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 583.000000,4425.000000, 0.116414,0.883586, maf-5-some-pop,maf-5-all-pops 591 chr1 874072 874073 rs28450942 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ENSEMBL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4728.000000,280.000000, 0.944089,0.055911, maf-5-some-pop 591 chr1 874664 874665 rs74047413 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SEATTLESEQ, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 591 chr1 875159 875177 rs141837153 0 + GCCAGTGGACGCCGACCT GCCAGTGGACGCCGACCT -/GCCAGTGGACGCCGACCT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GCCAGTGGACGCCGACCT, 2321.000000,2687.000000, 0.463458,0.536542, 591 chr1 875635 875636 rs556157869 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 591 chr1 875642 875643 rs7411115 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,G, 1290.000000,3718.000000, 0.257588,0.742412, 591 chr1 875676 875678 rs552305601 0 + CC CC -/CC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CC, 3398.000000,1610.000000, 0.678514,0.321486, 591 chr1 875984 875985 rs113591768 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 591 chr1 876066 876067 rs145881258 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 591 chr1 876199 876200 rs71628924 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI, 2 C,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 591 chr1 876392 876393 rs112260347 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 591 chr1 876483 876484 rs118109273 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 591 chr1 876498 876499 rs4372192 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 A,G, 435.000000,4573.000000, 0.086861,0.913139, maf-5-some-pop 591 chr1 876948 876949 rs72902600 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,GMI,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,G, 443.000000,4565.000000, 0.088459,0.911542, maf-5-some-pop,maf-5-all-pops 591 chr1 877146 877147 rs114982608 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 859.000000,4149.000000, 0.171526,0.828474, maf-5-some-pop,maf-5-all-pops 591 chr1 877362 877363 rs185122266 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 115.000000,4893.000000, 0.022963,0.977037, 591 chr1 877714 877715 rs6605066 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,WI_SSAHASNP, 2 C,G, 561.000000,4447.000000, 0.112021,0.887979, maf-5-some-pop 591 chr1 877781 877782 rs79037098 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop,maf-5-all-pops 591 chr1 877830 877831 rs6672356 0 + T T C/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,MGC_GENOME_DIFF,NHLBI-ESP,SSMP, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 591 chr1 878313 878314 rs142558220 0 + G G C/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 7 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,TISHKOFF,WARNICH_LAB, 2 C,G, 216.000000,4792.000000, 0.043131,0.956869, 591 chr1 878516 878517 rs201043644 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB, 2 -,A, 211.000000,4797.000000, 0.042133,0.957867, 591 chr1 878906 878909 rs56972694 0 + TTT TTT -/TTT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HGSV,PJP, 2 -,TTT, 3872.000000,1136.000000, 0.773163,0.226837, 591 chr1 879275 879276 rs115454328 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3,missense exact 1 4 1000GENOMES,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, 591 chr1 879316 879317 rs7523549 0 + C C C/T genomic single unknown 0 0 coding-synon,intron,near-gene-3,ncRNA,missense exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop 591 chr1 879480 879481 rs113383096 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3,ncRNA,missense exact 1 6 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop 591 chr1 879575 879576 rs115979567 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3,missense,untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 591 chr1 879675 879676 rs6605067 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-3,untranslated-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4437.000000,571.000000, 0.885982,0.114018, maf-5-some-pop,maf-5-all-pops 591 chr1 879686 879687 rs2839 0 + T T C/T genomic single unknown 0 0 near-gene-3,missense,untranslated-3 exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WIAF,WI_SSAHASNP, 2 C,T, 4613.000000,395.000000, 0.921126,0.078874, maf-5-some-pop,maf-5-all-pops 591 chr1 879789 879795 rs145942386 0 + CTGGAA CTGGAA -/CTGGAA genomic deletion unknown 0 0 near-gene-3,cds-indel range 1 2 1000GENOMES,LUNTER, 2 -,CTGGAA, 275.000000,4733.000000, 0.054912,0.945088, 591 chr1 880237 880238 rs3748592 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 396.000000,4612.000000, 0.079073,0.920927, maf-5-some-pop,maf-5-all-pops 591 chr1 880389 880390 rs3748593 0 + C C A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 10 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop 591 chr1 880750 880751 rs113563466 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 591 chr1 881069 881070 rs41285794 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 591 chr1 881376 881377 rs74360597 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 280.000000,4728.000000, 0.055911,0.944089, maf-5-some-pop,maf-5-all-pops 591 chr1 881733 881734 rs74045012 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop 591 chr1 882249 882250 rs111463901 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,C, 108.000000,4900.000000, 0.021566,0.978435, 591 chr1 882780 882780 rs201354810 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,T, 4917.000000,91.000000, 0.981829,0.018171, 591 chr1 883007 883008 rs60851523 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop 591 chr1 883040 883041 rs57171501 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,G, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 591 chr1 883090 883091 rs61769752 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,ILLUMINA, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 591 chr1 883462 883463 rs148803745 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,T, 4954.000000,54.000000, 0.989217,0.010783, 591 chr1 883698 883699 rs58979014 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 591 chr1 884090 884091 rs7522415 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 8.000000,12.000000, 0.400000,0.600000, 591 chr1 884401 884402 rs114651174 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 591 chr1 884426 884426 rs72502742 0 + - - -/ACAGCAAAG genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BGI,BILGI_BIOE,BUSHMAN,LUNTER,TISHKOFF, 2 -,ACAGCAAAG, 792.000000,4216.000000, 0.158147,0.841853, 591 chr1 884549 884553 rs368747638 0 + AGAG AGAG -/AGAG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,AGAG, 160.000000,4848.000000, 0.031949,0.968051, 591 chr1 884634 884635 rs74045014 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 591 chr1 884766 884767 rs67274836 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 591 chr1 884814 884815 rs4246503 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop,maf-5-all-pops 591 chr1 885042 885043 rs74045015 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop 591 chr1 885656 885657 rs116767636 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, 591 chr1 885755 885756 rs111203417 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 591 chr1 885882 885884 rs149742804 0 + AC AC -/AC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,GMI,LUNTER, 2 -,AC, 52.000000,4956.000000, 0.010383,0.989617, 591 chr1 885903 885904 rs76451547 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop,maf-5-all-pops 591 chr1 885921 885922 rs111378522 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, 591 chr1 885944 885945 rs28535998 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 282.000000,4726.000000, 0.056310,0.943690, maf-5-some-pop,maf-5-all-pops 591 chr1 886186 886186 rs145470050 0 + - - -/AG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,AG, 392.000000,4616.000000, 0.078275,0.921725, 591 chr1 886205 886206 rs57325195 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 A,G, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 591 chr1 886383 886384 rs3748594 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 591 chr1 886408 886409 rs77573237 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, 591 chr1 886476 886477 rs74045017 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,NHLBI-ESP, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 591 chr1 886491 886492 rs114938545 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 591 chr1 886787 886788 rs10465242 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3551.000000,1457.000000, 0.709065,0.290935, maf-5-some-pop,maf-5-all-pops 591 chr1 886816 886817 rs10465241 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 1454.000000,3554.000000, 0.290335,0.709665, maf-5-some-pop,maf-5-all-pops 591 chr1 886817 886817 rs111748052 0 + - - -/ATTTT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,ATTTT, 4361.000000,647.000000, 0.870807,0.129193, 591 chr1 886831 886831 rs201063168 0 + - - -/GGTCA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,GGTCA, 4931.000000,77.000000, 0.984625,0.015375, 591 chr1 887058 887059 rs76456117 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 468.000000,4540.000000, 0.093451,0.906550, maf-5-some-pop,maf-5-all-pops 591 chr1 887093 887094 rs74045018 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 C,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 591 chr1 887161 887162 rs17160698 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop 591 chr1 887536 887537 rs74045020 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop 591 chr1 887559 887560 rs3748595 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,C, 502.000000,4506.000000, 0.100240,0.899760, maf-5-some-pop 591 chr1 887800 887801 rs3828047 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 27 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 389.000000,4619.000000, 0.077676,0.922324, maf-5-some-pop 591 chr1 888219 888220 rs28711536 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop 591 chr1 888238 888239 rs58215279 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 591 chr1 888638 888639 rs3748596 0 + T T C/T genomic single unknown 0 0 coding-synon,missense exact 1 29 1000GENOMES,ABI,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 591 chr1 888658 888659 rs3748597 0 + T T C/T genomic single unknown 0 0 missense exact 1 32 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 591 chr1 889130 889131 rs3828048 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4723.000000,285.000000, 0.943091,0.056909, maf-5-some-pop 591 chr1 889158 889159 rs13302945 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP, 2 A,C, 479.000000,4529.000000, 0.095647,0.904353, maf-5-some-pop,maf-5-all-pops 591 chr1 889237 889238 rs3828049 0 + G G A/G genomic single unknown 0 0 missense exact 1 14 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 283.000000,4725.000000, 0.056510,0.943490, maf-5-some-pop 591 chr1 889285 889286 rs138652400 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 591 chr1 889637 889638 rs13303206 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4515.000000,493.000000, 0.901558,0.098442, maf-5-some-pop,maf-5-all-pops 591 chr1 889712 889713 rs13303051 0 + C C A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4494.000000,514.000000, 0.897364,0.102636, maf-5-some-pop,maf-5-all-pops 591 chr1 890103 890104 rs28631199 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop 591 chr1 890218 890219 rs77259182 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 591 chr1 890271 890272 rs74045022 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 C,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 591 chr1 890294 890295 rs6661531 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop,maf-5-all-pops 591 chr1 891020 891021 rs13302957 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4152.000000,856.000000, 0.829073,0.170927, maf-5-some-pop,maf-5-all-pops 591 chr1 891058 891059 rs13303065 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2738.000000,2270.000000, 0.546725,0.453275, maf-5-some-pop,maf-5-all-pops 591 chr1 891897 891898 rs112164716 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 591 chr1 891944 891945 rs13303106 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2734.000000,2274.000000, 0.545927,0.454073, maf-5-some-pop 591 chr1 892011 892012 rs58879223 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop,maf-5-all-pops 591 chr1 892094 892095 rs17160703 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop 591 chr1 892459 892460 rs41285802 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF, 2 C,G, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop 591 chr1 892470 892471 rs41285804 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop 591 chr1 892744 892745 rs13303227 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop,maf-5-all-pops 591 chr1 893614 893615 rs75254714 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop,maf-5-all-pops 591 chr1 893630 893631 rs6605069 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 505.000000,4503.000000, 0.100839,0.899161, maf-5-some-pop,maf-5-all-pops 591 chr1 893881 893882 rs7512193 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,WI_SSAHASNP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 591 chr1 894572 894573 rs13303010 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KYUGEN,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3177.000000,1831.000000, 0.634385,0.365615, maf-5-some-pop,maf-5-all-pops 591 chr1 894718 894719 rs187243360 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, 591 chr1 894890 894890 rs111643007 0 + - - -/AGAC genomic insertion unknown 0 0 near-gene-5 between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,AGAC, 417.000000,4591.000000, 0.083267,0.916733, 591 chr1 895037 895037 rs200368041 0 + - - -/G genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,LUNTER, 2 -,G, 4909.000000,99.000000, 0.980232,0.019768, 591 chr1 895267 895268 rs191703739 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,WARNICH_LAB, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, 591 chr1 895705 895706 rs13303327 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 3187.000000,1821.000000, 0.636382,0.363618, maf-5-some-pop,maf-5-all-pops 591 chr1 895755 895755 rs113491766 0 + - - -/G genomic insertion unknown 0 0 near-gene-5 between 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP, 2 -,G, 1815.000000,3193.000000, 0.362420,0.637580, 591 chr1 895819 895820 rs115302202 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,maf-5-all-pops 591 chr1 895888 895889 rs72891151 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 591 chr1 896063 896064 rs113034360 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,JMKIDD_LAB,SSMP, 2 C,G, 4546.000000,462.000000, 0.907748,0.092252, 591 chr1 896270 896271 rs112905931 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 3116.000000,1892.000000, 0.622204,0.377796, maf-5-some-pop,maf-5-all-pops 591 chr1 896332 896333 rs144174542 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4550.000000,458.000000, 0.908546,0.091454, 591 chr1 896475 896476 rs28393498 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop,maf-5-all-pops 591 chr1 896949 896950 rs74045023 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,C, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop 591 chr1 897324 897325 rs4970441 0 - G G C/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 25 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 897563 897564 rs13303229 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,MGC_GENOME_DIFF,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop,maf-5-all-pops 591 chr1 897729 897730 rs7549631 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,missense exact 1 10 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop 591 chr1 897737 897738 rs6696971 0 + C C C/T genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 13 1000GENOMES,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop 591 chr1 897878 897879 rs79008338 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop 591 chr1 898322 898323 rs6605071 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4642.000000,366.000000, 0.926917,0.073083, maf-5-some-pop,maf-5-all-pops 591 chr1 898466 898467 rs41285808 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SI_EXO, 2 C,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop 591 chr1 898851 898852 rs117269332 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop 591 chr1 898857 898858 rs61743507 0 + C C C/T genomic single by-frequency 0.13875 0.223883 coding-synon exact 1 1 CORNELL, 2 C,T, 37.000000,3.000000, 0.925000,0.075000, maf-5-some-pop,maf-5-all-pops 591 chr1 899927 899928 rs6677386 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,NHLBI-ESP,SSAHASNP,SSMP, 2 C,G, 4151.000000,857.000000, 0.828874,0.171126, maf-5-some-pop,maf-5-all-pops 591 chr1 899937 899938 rs147467971 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BL,EVA-GONL, 2 C,G, 4167.000000,841.000000, 0.832069,0.167931, 591 chr1 899941 899942 rs71509448 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,NHLBI-ESP, 2 A,G, 4019.000000,989.000000, 0.802516,0.197484, 591 chr1 899942 899943 rs574650767 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 200.000000,4808.000000, 0.039936,0.960064, 591 chr1 899948 899949 rs144694530 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4569.000000,439.000000, 0.912340,0.087660, 591 chr1 899968 899969 rs577209717 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 262.000000,4746.000000, 0.052316,0.947684, 591 chr1 899969 899970 rs546220348 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4746.000000,262.000000, 0.947684,0.052316, 591 chr1 899973 899974 rs7414551 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,SC_JCM,SSAHASNP, 2 A,G, 1029.000000,3979.000000, 0.205471,0.794529, 591 chr1 899974 899975 rs7419154 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,SC_JCM,SSAHASNP, 2 C,G, 3979.000000,1029.000000, 0.794529,0.205471, 591 chr1 899988 899989 rs6669071 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 A,C, 809.000000,4199.000000, 0.161542,0.838458, 591 chr1 900000 900001 rs28754834 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL, 2 A,G, 4051.000000,957.000000, 0.808906,0.191094, 591 chr1 900008 900009 rs6704181 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 C,G, 957.000000,4051.000000, 0.191094,0.808906, 591 chr1 900010 900010 rs558710007 0 + - - -/C genomic insertion unknown 0 0 intron,near-gene-5 between 1 2 1000GENOMES,SSIP, 2 -,C, 957.000000,4051.000000, 0.191094,0.808906, 591 chr1 900018 900019 rs7419177 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SC_JCM, 2 C,T, 4571.000000,437.000000, 0.912740,0.087260, 591 chr1 900168 900169 rs181648457 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4805.000000,203.000000, 0.959465,0.040535, 591 chr1 900170 900171 rs186756173 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4592.000000,416.000000, 0.916933,0.083067, 591 chr1 900187 900188 rs568265657 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4601.000000,407.000000, 0.918730,0.081270, 591 chr1 900190 900191 rs534029559 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 407.000000,4601.000000, 0.081270,0.918730, 591 chr1 900198 900199 rs554003492 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4601.000000,407.000000, 0.918730,0.081270, 591 chr1 900200 900200 rs571707493 0 + - - -/C genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,C, 4601.000000,407.000000, 0.918730,0.081270, 591 chr1 900207 900208 rs570260900 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 460.000000,4548.000000, 0.091853,0.908147, 591 chr1 900297 900298 rs71628926 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,NHLBI-ESP, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 591 chr1 900318 900319 rs80351873 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,NHLBI-ESP,SSMP, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop,maf-5-all-pops 591 chr1 900396 900397 rs111560052 0 + C C C/T genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop 591 chr1 900426 900427 rs115741058 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 7 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 591 chr1 900504 900505 rs28705211 0 + G G C/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 13 1000GENOMES,ABI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,G, 845.000000,4163.000000, 0.168730,0.831270, maf-5-some-pop,maf-5-all-pops 591 chr1 900559 900560 rs188543688 0 + A A A/C genomic single unknown 0 0 near-gene-5,missense exact 1 NonIntegerChromCount 4 CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,LIMM_JT, 2 A,C, 285.070007,4.930000, 0.983000,0.017000, 591 chr1 900717 900721 rs142545439 0 + TTAT TTAT -/TTAT genomic deletion unknown 0 0 near-gene-5,untranslated-3 range 1 6 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TTAT, 1856.000000,3152.000000, 0.370607,0.629393, 591 chr1 900971 900972 rs9697711 0 + T T G/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4658.000000,350.000000, 0.930112,0.069888, maf-5-some-pop,maf-5-all-pops 591 chr1 901022 901023 rs13303351 0 + T T C/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop,maf-5-all-pops 591 chr1 901112 901113 rs57064333 0 + T T C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop,maf-5-all-pops 591 chr1 901336 901337 rs72891160 0 + T T G/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 G,T, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop,maf-5-all-pops 591 chr1 901558 901559 rs13303160 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3263.000000,1745.000000, 0.651558,0.348442, maf-5-some-pop,maf-5-all-pops 591 chr1 901606 901607 rs13302996 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 882.000000,4126.000000, 0.176118,0.823882, maf-5-some-pop,maf-5-all-pops 591 chr1 901651 901652 rs2879814 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 591 chr1 901805 901806 rs2879815 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1420.000000,3588.000000, 0.283546,0.716454, maf-5-some-pop,maf-5-all-pops 591 chr1 901922 901923 rs149741186 0 + C C A/C genomic single unknown 0 0 missense exact 1 5 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,ROSENBERGLAB, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, 591 chr1 902068 902069 rs116147894 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 418.000000,4590.000000, 0.083467,0.916534, maf-5-some-pop 591 chr1 902127 902128 rs28499371 0 + C C C/T genomic single unknown 0 0 missense exact 1 12 1000GENOMES,ABI,ENSEMBL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop 591 chr1 902287 902288 rs77359280 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, 591 chr1 902748 902749 rs113967711 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,G, 4492.000000,516.000000, 0.896965,0.103035, 591 chr1 902755 902756 rs573481902 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 54.000000,4954.000000, 0.010783,0.989217, 591 chr1 902996 902997 rs7524174 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop,maf-5-all-pops 591 chr1 903103 903104 rs6696281 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3806.000000,1202.000000, 0.759984,0.240016, maf-5-some-pop 591 chr1 903112 903113 rs28529599 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,SSAHASNP,TISHKOFF, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 591 chr1 903244 903245 rs28690976 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,TISHKOFF, 2 A,G, 2808.000000,2200.000000, 0.560703,0.439297, maf-5-some-pop,maf-5-all-pops 591 chr1 903320 903321 rs6669800 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop 591 chr1 903425 903426 rs6696609 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3090.000000,1918.000000, 0.617013,0.382987, maf-5-some-pop,maf-5-all-pops 591 chr1 904032 904033 rs13302925 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 ABI,ENSEMBL,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP, 2 A,G, 2.000000,102.000000, 0.019231,0.980769, 591 chr1 904164 904165 rs28391282 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 510.000000,4498.000000, 0.101837,0.898163, maf-5-some-pop 591 chr1 904354 904355 rs28695703 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop 591 chr1 904627 904628 rs28562326 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 375.000000,4633.000000, 0.074880,0.925120, maf-5-some-pop 591 chr1 904757 904757 rs56411007 0 + - - -/TG genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,TG, 483.000000,4525.000000, 0.096446,0.903554, 591 chr1 904868 904870 rs58914115 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HGSV,TISHKOFF, 2 -,TG, 122.000000,4886.000000, 0.024361,0.975639, 591 chr1 904941 904942 rs6667868 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3965.000000,1043.000000, 0.791733,0.208267, maf-5-some-pop 591 chr1 905016 905017 rs59766802 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,SSMP,TISHKOFF, 2 C,T, 1079.000000,3929.000000, 0.215455,0.784545, 591 chr1 905019 905020 rs561810608 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4849.000000,159.000000, 0.968251,0.031749, 591 chr1 905028 905032 rs59003748 0 + CGTG CGTG -/CGTG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HGSV,TISHKOFF, 2 -,CGTG, 597.000000,4411.000000, 0.119209,0.880791, 591 chr1 905043 905045 rs201793107 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,GMI, 2 -,AT, 866.000000,4142.000000, 0.172923,0.827077, 591 chr1 905130 905132 rs139206887 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,BL,GMI,LUNTER,SSMP, 2 -,TG, 1994.000000,3014.000000, 0.398163,0.601837, 591 chr1 905158 905160 rs142329267 0 + GC GC -/GC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BL,SSMP, 2 -,GC, 181.000000,4827.000000, 0.036142,0.963858, 591 chr1 905159 905160 rs7555426 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1513.000000,3495.000000, 0.302117,0.697883, maf-5-some-pop 591 chr1 905164 905165 rs7522959 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1496.000000,3512.000000, 0.298722,0.701278, maf-5-some-pop 591 chr1 905935 905936 rs62639983 0 + C C C/T genomic single by-cluster 0.026662 0.112339 coding-synon exact 1 2 CORNELL,NHLBI-ESP, 2 C,T, 73.000000,1.000000, 0.986486,0.013513, 591 chr1 906271 906272 rs28507236 0 + A A A/C genomic single unknown 0 0 coding-synon exact 1 15 1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4106.000000,902.000000, 0.819888,0.180112, maf-5-some-pop 591 chr1 906973 906974 rs28687571 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 385.000000,4623.000000, 0.076877,0.923123, maf-5-some-pop,maf-5-all-pops 591 chr1 907022 907023 rs28417170 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop,maf-5-all-pops 591 chr1 907170 907171 rs113797882 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 1513.000000,3495.000000, 0.302117,0.697883, 591 chr1 907216 907217 rs74045032 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 591 chr1 907608 907609 rs79890672 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 349.000000,4659.000000, 0.069688,0.930312, maf-5-some-pop 591 chr1 907621 907622 rs59928984 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,NHLBI-ESP,SSMP,TISHKOFF, 2 C,G, 576.000000,4432.000000, 0.115016,0.884984, maf-5-some-pop 591 chr1 907798 907799 rs111909377 0 + T T C/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,BUSHMAN,EXOME_CHIP,NHLBI-ESP, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop 591 chr1 907815 907816 rs111795407 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 591 chr1 907991 907992 rs370586021 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,SSIP,SSMP, 2 -,A, 333.000000,4675.000000, 0.066494,0.933506, 591 chr1 907992 907993 rs78806832 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,TISHKOFF, 2 A,C, 4827.000000,181.000000, 0.963858,0.036142, 591 chr1 907993 907994 rs558474450 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4675.000000,333.000000, 0.933506,0.066494, 591 chr1 907997 907998 rs77098784 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,T, 4667.000000,341.000000, 0.931909,0.068091, 591 chr1 908024 908025 rs112185012 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, 591 chr1 908076 908077 rs148980964 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 591 chr1 908169 908170 rs28542142 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3975.000000,1033.000000, 0.793730,0.206270, maf-5-some-pop,maf-5-all-pops 591 chr1 908274 908275 rs145574509 0 + G G A/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 591 chr1 908413 908414 rs28504611 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4101.000000,907.000000, 0.818890,0.181110, maf-5-some-pop 591 chr1 908748 908749 rs111919992 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 591 chr1 908822 908823 rs28687780 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 701.000000,4307.000000, 0.139976,0.860024, maf-5-some-pop 591 chr1 909072 909073 rs3892467 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2915.000000,2093.000000, 0.582069,0.417931, maf-5-some-pop,maf-5-all-pops 591 chr1 909220 909221 rs62639985 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,CLINSEQ_SNP,CORNELL,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 81.000000,4927.000000, 0.016174,0.983826, 591 chr1 909221 909222 rs56185812 0 + G G A/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,CORNELL,EXOME_CHIP,HGSV,ILLUMINA,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop 591 chr1 909237 909238 rs3829740 0 - G G C/G genomic single unknown 0 0 missense exact 1 28 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 591 chr1 909325 909326 rs61573829 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 12 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4674.000000,334.000000, 0.933307,0.066693, maf-5-some-pop 591 chr1 909362 909363 rs62639990 0 + A A A/C genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,CLINSEQ_SNP,CORNELL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,C, 4685.000000,323.000000, 0.935503,0.064497, maf-5-some-pop 591 chr1 909418 909419 rs28548431 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,CORNELL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSAHASNP,SSMP, 2 C,T, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop 591 chr1 909554 909555 rs2340594 0 - A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 4 A,C,G,T, 516.000000,4492.000000,4492.000000,516.000000, 0.051518,0.448482,0.448482,0.051518, maf-5-some-pop 591 chr1 910393 910394 rs28477686 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2727.000000,2281.000000, 0.544529,0.455471, maf-5-some-pop,maf-5-all-pops 591 chr1 910408 910409 rs28536514 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 11 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop,maf-5-all-pops 591 chr1 910472 910473 rs28561399 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3,untranslated-3 exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 856.000000,4152.000000, 0.170927,0.829073, maf-5-some-pop,maf-5-all-pops 591 chr1 910511 910512 rs74424855 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop 591 chr1 910527 910532 rs141996759 0 + AGAGA AGAGA -/AGAGA genomic deletion unknown 0 0 intron,near-gene-3 range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,AGAGA, 221.000000,4787.000000, 0.044129,0.955871, 591 chr1 911100 911101 rs3748588 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop,maf-5-all-pops 591 chr1 911180 911181 rs114918572 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 591 chr1 911417 911418 rs113068688 0 + A A A/C genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 A,C, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 591 chr1 911594 911595 rs7417106 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,MGC_GENOME_DIFF,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1451.000000,3557.000000, 0.289736,0.710264, maf-5-some-pop 591 chr1 912048 912049 rs7367995 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 2597.000000,2411.000000, 0.518570,0.481430, maf-5-some-pop,maf-5-all-pops 591 chr1 913188 913189 rs551986632 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4949.000000,59.000000, 0.988219,0.011781, 591 chr1 913418 913419 rs535429849 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 92.000000,4916.000000, 0.018371,0.981629, 591 chr1 913421 913422 rs555071784 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, 591 chr1 913425 913426 rs531944376 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 2741.000000,2267.000000, 0.547324,0.452676, 591 chr1 913586 913586 rs201281744 0 + - - -/AACT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,AACT, 4923.000000,85.000000, 0.983027,0.016973, 591 chr1 913609 913610 rs74045047 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 939.000000,4069.000000, 0.187500,0.812500, maf-5-some-pop,maf-5-all-pops 591 chr1 913697 913698 rs115113522 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 591 chr1 914191 914192 rs2340595 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 591 chr1 914324 914325 rs140514242 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 591 chr1 914332 914333 rs13302979 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2222.000000,2786.000000, 0.443690,0.556310, maf-5-some-pop,maf-5-all-pops 591 chr1 914609 914610 rs145616017 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,CLINSEQ_SNP,EVA-GONL, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 591 chr1 914804 914805 rs28548166 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,SSAHASNP,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 591 chr1 914851 914852 rs13303368 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2567.000000,2441.000000, 0.512580,0.487420, maf-5-some-pop,maf-5-all-pops 591 chr1 914875 914876 rs13302983 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop 591 chr1 914939 914940 rs13303033 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2552.000000,2456.000000, 0.509585,0.490415, maf-5-some-pop,maf-5-all-pops 591 chr1 915226 915227 rs13303355 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 410.000000,4598.000000, 0.081869,0.918131, maf-5-some-pop 591 chr1 915263 915264 rs113243246 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop 591 chr1 915398 915399 rs112622122 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 591 chr1 916548 916549 rs6660139 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1209.000000,3799.000000, 0.241414,0.758586, maf-5-some-pop,maf-5-all-pops 591 chr1 916589 916590 rs28566954 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 344.000000,4664.000000, 0.068690,0.931310, maf-5-some-pop,maf-5-all-pops 591 chr1 916661 916662 rs56028034 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4053.000000,955.000000, 0.809305,0.190695, maf-5-some-pop,maf-5-all-pops 591 chr1 916833 916834 rs6694632 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2770.000000,2238.000000, 0.553115,0.446885, maf-5-some-pop,maf-5-all-pops 591 chr1 916975 916976 rs114479127 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 591 chr1 917059 917060 rs6605058 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 392.000000,4616.000000, 0.078275,0.921725, maf-5-some-pop 591 chr1 917314 917315 rs7547878 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 933.000000,4075.000000, 0.186302,0.813698, maf-5-some-pop,maf-5-all-pops 591 chr1 917491 917492 rs28434575 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,COMPLETE_GENOMICS,CORNELL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4104.000000,904.000000, 0.819489,0.180511, maf-5-some-pop,maf-5-all-pops 592 chr1 917639 917640 rs41285816 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,G, 758.000000,4250.000000, 0.151358,0.848642, maf-5-some-pop 592 chr1 917687 917688 rs111479166 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 592 chr1 918237 918238 rs28552711 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4228.000000,780.000000, 0.844249,0.155751, maf-5-some-pop,maf-5-all-pops 592 chr1 918269 918270 rs6659460 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4111.000000,897.000000, 0.820887,0.179113, maf-5-some-pop,maf-5-all-pops 592 chr1 918383 918384 rs13303118 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2541.000000,2467.000000, 0.507388,0.492612, maf-5-some-pop,maf-5-all-pops 592 chr1 918572 918573 rs2341354 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2258.000000,2750.000000, 0.450879,0.549121, maf-5-some-pop,maf-5-all-pops 592 chr1 918748 918749 rs145913083 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 592 chr1 918817 918818 rs373912596 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 592 chr1 919126 919127 rs28469033 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 832.000000,4176.000000, 0.166134,0.833866, maf-5-some-pop,maf-5-all-pops 592 chr1 919135 919136 rs114824944 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,ILLUMINA, 2 G,T, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 592 chr1 919418 919419 rs6605059 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4169.000000,839.000000, 0.832468,0.167532, maf-5-some-pop,maf-5-all-pops 592 chr1 919488 919489 rs61606412 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop,maf-5-all-pops 592 chr1 919525 919529 rs202103781 0 + AGTC AGTC -/AGTC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,AGTC, 332.000000,4676.000000, 0.066294,0.933706, 592 chr1 919634 919635 rs149496003 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 592 chr1 919854 919855 rs116781904 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 493.000000,4515.000000, 0.098443,0.901558, maf-5-some-pop,maf-5-all-pops 592 chr1 919997 919998 rs2341357 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,GMI,HGSV,TSC-CSHL, 2 A,C, 2039.000000,2969.000000, 0.407149,0.592851, 592 chr1 920050 920051 rs6656482 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM_SSAHASNP,HGSV,TISHKOFF, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop,maf-5-all-pops 592 chr1 920502 920503 rs28896913 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 575.000000,4433.000000, 0.114816,0.885184, 592 chr1 920639 920640 rs28869591 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4226.000000,782.000000, 0.843850,0.156150, maf-5-some-pop,maf-5-all-pops 592 chr1 920648 920649 rs6659542 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,HGSV,JMKIDD_LAB,PJP, 2 A,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 592 chr1 920691 920692 rs28878601 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 394.000000,4614.000000, 0.078674,0.921326, maf-5-some-pop,maf-5-all-pops 592 chr1 920732 920733 rs6677131 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4525.000000,483.000000, 0.903554,0.096446, maf-5-some-pop 592 chr1 920889 920890 rs181925002 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 592 chr1 920976 920977 rs55692389 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 C,T, 778.000000,4230.000000, 0.155351,0.844649, maf-5-some-pop,maf-5-all-pops 592 chr1 921070 921071 rs78164078 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 592 chr1 921386 921387 rs115014500 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 592 chr1 921542 921543 rs138605309 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 921569 921570 rs6662128 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4462.000000,546.000000, 0.890974,0.109026, 592 chr1 921659 921660 rs6703008 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4335.000000,673.000000, 0.865615,0.134385, 592 chr1 921715 921716 rs13303278 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2127.000000,2881.000000, 0.424720,0.575280, 592 chr1 922008 922009 rs6693747 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop,maf-5-all-pops 592 chr1 922103 922104 rs150074085 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 592 chr1 922482 922483 rs114583033 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 781.000000,4227.000000, 0.155950,0.844050, maf-5-some-pop,maf-5-all-pops 592 chr1 923075 923076 rs6605060 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 493.000000,4515.000000, 0.098442,0.901558, 592 chr1 923410 923411 rs28455528 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSAHASNP, 2 A,T, 4952.000000,56.000000, 0.988818,0.011182, 592 chr1 923448 923448 rs200779702 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,T, 4932.000000,76.000000, 0.984824,0.015176, 592 chr1 923458 923459 rs9442609 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 540.000000,4468.000000, 0.107827,0.892173, maf-5-some-pop 592 chr1 923748 923749 rs9442610 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4468.000000,540.000000, 0.892173,0.107827, 592 chr1 923972 923973 rs567711839 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, 592 chr1 923978 923978 rs70949537 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BILGI_BIOE,GMI,HUMANGENOME_JCVI,PJP, 2 -,G, 440.000000,4568.000000, 0.087859,0.912141, 592 chr1 924110 924111 rs28447224 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,T, 957.000000,4051.000000, 0.191094,0.808906, maf-5-some-pop,maf-5-all-pops 592 chr1 924448 924452 rs148375199 0 + TTGA TTGA -/TTGA genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,TTGA, 2698.000000,2310.000000, 0.538738,0.461262, 592 chr1 924563 924567 rs577744059 0 + TTGA TTGA -/TTGA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TTGA, 65.000000,4943.000000, 0.012979,0.987021, 592 chr1 924602 924603 rs28422907 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 4456.000000,552.000000, 0.889776,0.110224, 592 chr1 924628 924629 rs28622096 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop 592 chr1 924897 924898 rs6665000 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4468.000000,540.000000, 0.892173,0.107827, maf-5-some-pop 592 chr1 925613 925614 rs28884905 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,G, 177.000000,4831.000000, 0.035344,0.964656, 592 chr1 925619 925620 rs147695391 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 925683 925684 rs6605061 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4468.000000,540.000000, 0.892173,0.107827, 592 chr1 926350 926351 rs6671243 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop 592 chr1 926430 926431 rs4970403 0 - A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 592 chr1 926967 926968 rs140144962 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4213.000000,795.000000, 0.841254,0.158746, 592 chr1 927740 927741 rs6665587 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 689.000000,4319.000000, 0.137580,0.862420, 592 chr1 927823 927824 rs146759602 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 928010 928011 rs114170846 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, maf-5-some-pop,maf-5-all-pops 592 chr1 928287 928288 rs111308432 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 592 chr1 928296 928297 rs112169476 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop 592 chr1 928311 928312 rs74045070 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA-UK, 2 C,T, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,maf-5-all-pops 592 chr1 928415 928416 rs111754459 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 1092.000000,3916.000000, 0.218051,0.781949, 592 chr1 928461 928462 rs182517078 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, 592 chr1 928577 928578 rs28394749 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop 592 chr1 928597 928598 rs114605661 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 592 chr1 928743 928744 rs74045071 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 592 chr1 928835 928836 rs9777703 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop 592 chr1 928849 928851 rs112853871 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP, 2 -,AG, 250.000000,4758.000000, 0.049920,0.950080, 592 chr1 928859 928860 rs117787650 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 118.000000,2.000000, 0.983333,0.016667, 592 chr1 928968 928969 rs115490086 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 592 chr1 929189 929190 rs9777939 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 320.000000,4688.000000, 0.063898,0.936102, maf-5-some-pop 592 chr1 929326 929327 rs13302924 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop 592 chr1 929564 929565 rs144071868 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4214.000000,794.000000, 0.841454,0.158546, 592 chr1 929701 929701 rs541210110 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 2004.000000,3004.000000, 0.400160,0.599840, 592 chr1 930328 930329 rs3128108 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4059.000000,949.000000, 0.810503,0.189497, maf-5-some-pop,maf-5-all-pops 592 chr1 930376 930377 rs3128109 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4059.000000,949.000000, 0.810503,0.189497, maf-5-some-pop,maf-5-all-pops 592 chr1 930532 930533 rs3128110 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 3184.000000,1824.000000, 0.635783,0.364217, maf-5-some-pop,maf-5-all-pops 592 chr1 930750 930751 rs3128111 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 3495.000000,1513.000000, 0.697883,0.302117, maf-5-some-pop,maf-5-all-pops 592 chr1 930888 930893 rs55952878 0 + TTTTT TTTTT -/TTTTT genomic deletion unknown 0 0 unknown range 1 9 1000GENOMES,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 -,TTTTT, 2741.000000,2267.000000, 0.547324,0.452676, 592 chr1 930891 930892 rs2799059 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SC_JCM,TISHKOFF, 2 C,T, 2161.000000,2847.000000, 0.431510,0.568490, 592 chr1 931228 931229 rs9697692 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop 592 chr1 931338 931339 rs59628617 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,JMKIDD_LAB, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 592 chr1 931361 931362 rs2799060 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP, 2 A,G, 1625.000000,3383.000000, 0.324481,0.675519, maf-5-some-pop,maf-5-all-pops 592 chr1 931454 931455 rs28580809 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,SSAHASNP,TISHKOFF, 2 A,C, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 592 chr1 931499 931500 rs74718486 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4187.000000,821.000000, 0.836062,0.163938, maf-5-some-pop,maf-5-all-pops 592 chr1 931507 931508 rs2799061 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,T, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop 592 chr1 931547 931548 rs2799062 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP, 2 G,T, 4317.000000,691.000000, 0.862021,0.137979, maf-5-some-pop 592 chr1 931634 931634 rs376071850 0 + - - -/GGGAGGGCAG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,GGGAGGGCAG, 4325.000000,683.000000, 0.863618,0.136382, 592 chr1 931729 931730 rs2005437 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 177.000000,4831.000000, 0.035343,0.964657, maf-5-some-pop 592 chr1 931872 931873 rs2002848 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TSC-CSHL, 2 A,G, 4276.000000,732.000000, 0.853834,0.146166, 592 chr1 931938 931939 rs13303155 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,SSAHASNP,SSMP, 2 A,G, 1944.000000,3064.000000, 0.388179,0.611821, 592 chr1 932053 932054 rs13302969 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,HGSV,SSAHASNP,SSMP, 2 G,T, 2558.000000,2450.000000, 0.510783,0.489217, 592 chr1 932086 932087 rs4350142 0 + T T G/T genomic single unknown 0.486111 0.082168 unknown exact 1 7 COMPLETE_GENOMICS,ENSEMBL,HGSV,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 G,T, 7.000000,5.000000, 0.583333,0.416667, 592 chr1 932101 932102 rs3121573 0 - G G C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,SC_JCM,SSAHASNP, 2 C,T, 3.000000,7.000000, 0.300000,0.700000, 592 chr1 932175 932176 rs563804911 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4879.000000,129.000000, 0.974241,0.025759, 592 chr1 932309 932310 rs28645261 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSAHASNP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 592 chr1 932456 932457 rs1891910 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 659.000000,4349.000000, 0.131589,0.868411, maf-5-some-pop 592 chr1 932617 932618 rs3128112 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 177.000000,4831.000000, 0.035343,0.964657, 592 chr1 933026 933027 rs138918754 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 592 chr1 933044 933045 rs189213898 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 592 chr1 933446 933447 rs115202918 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 592 chr1 933588 933589 rs116625239 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 592 chr1 933789 933790 rs9442392 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2701.000000,2307.000000, 0.539337,0.460663, maf-5-some-pop,maf-5-all-pops 592 chr1 934098 934099 rs2710867 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SC_JCM,SSMP, 2 C,G, 4264.000000,744.000000, 0.851438,0.148562, maf-5-some-pop 592 chr1 934105 934106 rs2799063 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SC_JCM,SSMP, 2 A,G, 744.000000,4264.000000, 0.148562,0.851438, maf-5-some-pop 592 chr1 934129 934130 rs9697384 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,SSMP,WI_SSAHASNP, 2 C,G, 824.000000,4184.000000, 0.164537,0.835463, maf-5-some-pop,maf-5-all-pops 592 chr1 934143 934144 rs9697551 0 + C C C/G genomic single unknown 0 0 near-gene-3 exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP,WI_SSAHASNP, 2 C,G, 2659.000000,2349.000000, 0.530950,0.469050, 592 chr1 934144 934144 rs145897528 0 + - - -/GGAGG genomic insertion unknown 0 0 near-gene-3 between 1 2 1000GENOMES,LUNTER, 2 -,GGAGG, 3954.000000,1054.000000, 0.789537,0.210463, 592 chr1 934344 934345 rs9697457 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop 592 chr1 935045 935046 rs113602214 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,CLINSEQ_SNP,GMI,ILLUMINA,NHLBI-ESP,SSMP, 2 A,G, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 592 chr1 935397 935398 rs146254088 0 + G G A/G genomic single unknown 0 0 untranslated-5 exact 1 1 1000GENOMES, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 592 chr1 935458 935459 rs3128113 0 + A A A/G genomic single unknown 0 0 untranslated-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 A,G, 1617.000000,3391.000000, 0.322883,0.677117, maf-5-some-pop,maf-5-all-pops 592 chr1 935658 935659 rs139298395 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 1 1000GENOMES, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, 592 chr1 935670 935671 rs116904365 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4174.000000,834.000000, 0.833466,0.166534, maf-5-some-pop,maf-5-all-pops 592 chr1 935714 935715 rs3128114 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 5 1000GENOMES,EVA-GONL,HGSV,SC_JCM,SSMP, 2 C,T, 4346.000000,662.000000, 0.867812,0.132188, maf-5-some-pop,maf-5-all-pops 592 chr1 935832 935833 rs3128115 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 C,G, 1617.000000,3391.000000, 0.322883,0.677117, maf-5-some-pop,maf-5-all-pops 592 chr1 935931 935932 rs35310704 0 - C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 7 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,PJP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 592 chr1 936486 936487 rs116607870 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4927.000000,81.000000, 0.983826,0.016174, 592 chr1 936686 936687 rs114518990 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,C, 100.000000,4908.000000, 0.019968,0.980032, 592 chr1 936712 936713 rs61766282 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI, 2 G,T, 4777.000000,231.000000, 0.953874,0.046126, maf-5-some-pop,maf-5-all-pops 592 chr1 937249 937250 rs28615823 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSAHASNP,SSMP, 2 C,G, 4263.000000,745.000000, 0.851238,0.148762, maf-5-some-pop,maf-5-all-pops 592 chr1 937431 937432 rs111758243 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,GMI,SSMP,TISHKOFF, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 937572 937572 rs559968229 0 + - - -/T genomic insertion unknown 0 0 near-gene-5 between 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,T, 4544.000000,464.000000, 0.907348,0.092652, 592 chr1 937672 937673 rs141263266 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 592 chr1 937777 937778 rs116316555 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 592 chr1 937795 937796 rs9777993 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,SSAHASNP, 2 A,T, 3003.000000,2005.000000, 0.599641,0.400359, 592 chr1 938219 938220 rs9697602 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 592 chr1 938299 938300 rs4595317 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,HGSV,PJP,SC_JCM,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, 592 chr1 938709 938728 rs201843604 0 + GGGTGGATCCTGGGCTGCA GGGTGGATCCTGGGCTGCA -/GGGTGGATCCTGGGCTGCA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GGGTGGATCCTGGGCTGCA, 143.000000,4865.000000, 0.028554,0.971446, 592 chr1 939214 939215 rs79589496 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 939491 939492 rs200016087 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 687.000000,4321.000000, 0.137181,0.862819, 592 chr1 939812 939813 rs115139441 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 592 chr1 940095 940096 rs4503294 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2335.000000,2673.000000, 0.466254,0.533746, maf-5-some-pop,maf-5-all-pops 592 chr1 940331 940331 rs200808990 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 4879.000000,129.000000, 0.974241,0.025759, 592 chr1 940334 940334 rs541896117 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4879.000000,129.000000, 0.974241,0.025759, 592 chr1 940541 940542 rs28360890 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 ABI,ENSEMBL,ILLUMINA,KRIBB_YJKIM,SSAHASNP, 2 A,C, 12.000000,1006.000000, 0.011788,0.988212, 592 chr1 940809 940809 rs58913475 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,A, 3517.000000,1491.000000, 0.702276,0.297724, 592 chr1 941100 941101 rs114443588 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 592 chr1 941137 941151 rs61703480 0 + GCCCCCGCAGCAGT GCCCCCGCAGCAGT -/GCCCCCGCAGCAGT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,HGSV,LUNTER, 2 -,GCCCCCGCAGCAGT, 3816.000000,1192.000000, 0.761981,0.238019, 592 chr1 941283 941284 rs3128116 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 3518.000000,1490.000000, 0.702476,0.297524, maf-5-some-pop,maf-5-all-pops 592 chr1 941333 941334 rs57683598 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 1469.000000,3539.000000, 0.293331,0.706669, maf-5-some-pop,maf-5-all-pops 592 chr1 941538 941539 rs9778087 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3134.000000,1874.000000, 0.625799,0.374201, maf-5-some-pop,maf-5-all-pops 592 chr1 941618 941619 rs28615107 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,T, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 592 chr1 941795 941803 rs145588482 0 + GGCAGCTC GGCAGCTC -/GGCAGCTC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GGCAGCTC, 360.000000,4648.000000, 0.071885,0.928115, 592 chr1 942029 942030 rs114204204 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 592 chr1 942291 942292 rs114970381 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 62.000000,4946.000000, 0.012380,0.987620, 592 chr1 942405 942406 rs9697552 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 592 chr1 942608 942609 rs116505294 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 592 chr1 942635 942636 rs76233940 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop,maf-5-all-pops 592 chr1 942704 942705 rs9697682 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4442.000000,566.000000, 0.886981,0.113019, maf-5-some-pop,maf-5-all-pops 592 chr1 942737 942738 rs9697440 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,G, 315.000000,4693.000000, 0.062899,0.937101, 592 chr1 942893 942894 rs149831251 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 592 chr1 943249 943250 rs3121568 0 - C C A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 6.000000,4.000000, 0.600000,0.400000, 592 chr1 943686 943687 rs2465140 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1483.000000,3525.000000, 0.296126,0.703874, maf-5-some-pop,maf-5-all-pops 592 chr1 943711 943712 rs74045075 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 592 chr1 943748 943749 rs114594699 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 54.000000,4954.000000, 0.010783,0.989217, 592 chr1 943906 943907 rs2488992 0 - C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 592 chr1 943967 943968 rs13303313 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2467.000000,2541.000000, 0.492612,0.507388, 592 chr1 944006 944007 rs143815266 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 52.000000,4956.000000, 0.010383,0.989617, 592 chr1 944062 944063 rs28386817 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 592 chr1 944203 944204 rs116676018 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 592 chr1 944563 944564 rs3128117 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1503.000000,3505.000000, 0.300120,0.699880, maf-5-some-pop,maf-5-all-pops 592 chr1 944849 944850 rs189318670 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4945.000000,63.000000, 0.987420,0.012580, 592 chr1 944856 944857 rs141222777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 592 chr1 944955 944956 rs138882270 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, 592 chr1 945017 945018 rs181948176 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 592 chr1 945095 945096 rs3135457 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 945.000000,4063.000000, 0.188698,0.811302, maf-5-some-pop 592 chr1 945110 945111 rs13303172 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop 592 chr1 945348 945349 rs114176189 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 592 chr1 945861 945865 rs150242145 0 + TTAT TTAT -/TTAT genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TTAT, 4245.000000,763.000000, 0.847644,0.152356, 592 chr1 945910 945911 rs74045077 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 592 chr1 945943 945944 rs74045078 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 592 chr1 946134 946135 rs9723307 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,GMI,SC_JCM, 2 G,T, 4455.000000,553.000000, 0.889577,0.110423, 592 chr1 946195 946196 rs151311466 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, 592 chr1 946987 946988 rs116274049 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 592 chr1 946998 946999 rs74045079 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop,maf-5-all-pops 592 chr1 947562 947563 rs60928912 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, 592 chr1 947702 947703 rs55672842 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,HGSV, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 592 chr1 947777 947778 rs9697358 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop 592 chr1 947808 947809 rs115074115 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,G, 74.000000,4934.000000, 0.014776,0.985224, 592 chr1 948421 948421 rs113047134 0 + - - -/AAC genomic insertion unknown 0 0 near-gene-5 between 1 6 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,LUNTER, 2 -,AAC, 432.000000,4576.000000, 0.086262,0.913738, 592 chr1 948476 948477 rs116046129 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 592 chr1 948578 948579 rs74045080 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop 592 chr1 948691 948692 rs2341365 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop 592 chr1 948869 948870 rs4615788 0 + C C C/G genomic single unknown 0 0 untranslated-5 exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 486.000000,4522.000000, 0.097045,0.902955, maf-5-some-pop 592 chr1 949052 949053 rs28491407 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,TISHKOFF, 2 C,G, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,maf-5-all-pops 592 chr1 949607 949608 rs1921 0 + G G A/G genomic single unknown 0 0 missense exact 1 29 1000GENOMES,AFFY,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,DEBNICK,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,SC_JCM,SC_SNP,SEATTLESEQ,SEQUENOM,SSMP,TISHKOFF,UWGC,WIAF,YUSUKE, 2 A,G, 1697.000000,3311.000000, 0.338858,0.661142, maf-5-some-pop,maf-5-all-pops 592 chr1 949653 949654 rs8997 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 26 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP, 2 A,G, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop 592 chr1 949830 949831 rs116002608 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,CLINSEQ_SNP,GMI,ILLUMINA,NHLBI-ESP,SSMP, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop 592 chr1 950113 950117 rs140258289 0 + AAGT AAGT -/AAGT genomic deletion unknown 0 0 near-gene-3 range 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,AAGT, 2636.000000,2372.000000, 0.526358,0.473642, 592 chr1 950507 950508 rs28446115 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop 592 chr1 950598 950599 rs138098440 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 592 chr1 950676 950677 rs9331223 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2671.000000,2337.000000, 0.533347,0.466653, maf-5-some-pop,maf-5-all-pops 592 chr1 950715 950716 rs2799069 0 - A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 592 chr1 951282 951283 rs9442363 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2345.000000,2663.000000, 0.468251,0.531749, 592 chr1 951294 951295 rs9442388 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 2346.000000,2662.000000, 0.468450,0.531550, 592 chr1 951305 951305 rs575235313 0 + - - -/TT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TT, 3505.000000,1503.000000, 0.699880,0.300120, 592 chr1 951321 951322 rs9697362 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 541.000000,4467.000000, 0.108027,0.891973, 592 chr1 951329 951330 rs9697717 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4468.000000,540.000000, 0.892173,0.107827, 592 chr1 951563 951564 rs2465141 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 3189.000000,1819.000000, 0.636781,0.363219, 592 chr1 951729 951730 rs114475700 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop,maf-5-all-pops 592 chr1 952002 952003 rs3128118 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1467.000000,3541.000000, 0.292931,0.707069, 592 chr1 952134 952135 rs28810436 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 592 chr1 952344 952345 rs114885312 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 592 chr1 952494 952494 rs59239970 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,PJP,SSMP, 2 -,T, 3514.000000,1494.000000, 0.701677,0.298323, 592 chr1 952506 952507 rs80090692 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ENSEMBL, 2 G,T, 4934.000000,74.000000, 0.985224,0.014776, 592 chr1 952641 952642 rs150130275 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 592 chr1 952745 952746 rs148896243 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 592 chr1 953076 953077 rs137877036 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,SSAHASNP,TISHKOFF, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 953183 953183 rs200588723 0 + - - -/GT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,GMI,LUNTER, 2 -,GT, 507.000000,4501.000000, 0.101238,0.898762, 592 chr1 953223 953224 rs139816136 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 C,T, 707.000000,4301.000000, 0.141174,0.858826, 592 chr1 953677 953678 rs113454255 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 C,T, 4301.000000,707.000000, 0.858826,0.141174, 592 chr1 953701 953702 rs115432780 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 592 chr1 953731 953732 rs150870361 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, 592 chr1 953744 953745 rs139425842 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, 592 chr1 953782 953783 rs189370274 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 592 chr1 953951 953952 rs9442612 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2393.000000,2615.000000, 0.477835,0.522165, 592 chr1 954031 954032 rs75267490 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,G, 3599.000000,1409.000000, 0.718650,0.281350, 592 chr1 954065 954066 rs144574777 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 114.000000,4894.000000, 0.022764,0.977236, 592 chr1 954283 954284 rs139943737 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 592 chr1 954776 954777 rs61766299 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 2392.000000,2616.000000, 0.477636,0.522364, maf-5-some-pop,maf-5-all-pops 592 chr1 955077 955078 rs529538851 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4950.000000,58.000000, 0.988419,0.011582, 592 chr1 955169 955170 rs189343112 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,MPI_MOLGEN, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 592 chr1 955212 955213 rs78276138 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ENSEMBL,GMI,SSMP, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 592 chr1 955440 955442 rs569722974 0 + CC CC -/CC genomic deletion unknown 0 0 near-gene-5 range 1 1 1000GENOMES, 2 -,CC, 2920.000000,2088.000000, 0.583067,0.416933, 592 chr1 955596 955597 rs115173026 0 + G G G/T genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 3593.000000,1415.000000, 0.717452,0.282548, maf-5-some-pop,maf-5-all-pops 592 chr1 955678 955679 rs4970342 0 + G G A/G genomic single by-cluster,by-frequency,by-hapmap 0.0853 0.188079 missense exact 1 3 ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 A,G, 15.000000,321.000000, 0.044643,0.955357, maf-5-some-pop 592 chr1 956076 956077 rs116130865 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 3594.000000,1414.000000, 0.717652,0.282348, maf-5-some-pop,maf-5-all-pops 592 chr1 956244 956245 rs549217966 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 592 chr1 956326 956327 rs111893801 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 592 chr1 956492 956493 rs74045083 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 592 chr1 956851 956852 rs9777931 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2374.000000,2634.000000, 0.474042,0.525958, maf-5-some-pop,maf-5-all-pops 592 chr1 956971 956972 rs28555183 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop 592 chr1 957104 957105 rs149265376 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, 592 chr1 957119 957120 rs3121553 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1364.000000,3644.000000, 0.272364,0.727636, maf-5-some-pop,maf-5-all-pops 592 chr1 957170 957171 rs115025567 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, 592 chr1 957172 957173 rs74045085 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 592 chr1 957254 957255 rs116468960 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 592 chr1 957567 957568 rs115704555 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 592 chr1 957639 957640 rs6657048 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,BCM_SSAHASNP,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop 592 chr1 957897 957898 rs2799064 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 G,T, 3363.000000,1645.000000, 0.671526,0.328474, maf-5-some-pop,maf-5-all-pops 592 chr1 957967 957967 rs141489152 0 + - - -/TGTAGTCTGACCTGTGGTCTGAC genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,TGTAGTCTGACCTGTGGTCTGAC, 538.000000,4470.000000, 0.107428,0.892572, 592 chr1 958016 958017 rs6670874 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,EVA-GONL, 2 A,G, 4909.000000,99.000000, 0.980232,0.019768, 592 chr1 958235 958236 rs113847517 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, 592 chr1 958247 958248 rs2001744 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3272.000000,1736.000000, 0.653355,0.346645, maf-5-some-pop,maf-5-all-pops 592 chr1 958683 958684 rs140010813 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4945.000000,63.000000, 0.987420,0.012580, 592 chr1 959025 959026 rs4452985 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 592 chr1 959154 959155 rs3845291 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2404.000000,2604.000000, 0.480032,0.519968, maf-5-some-pop,maf-5-all-pops 592 chr1 959168 959169 rs3845292 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2830.000000,2178.000000, 0.565096,0.434904, maf-5-some-pop,maf-5-all-pops 592 chr1 959508 959509 rs28591569 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 549.000000,4459.000000, 0.109625,0.890375, maf-5-some-pop,maf-5-all-pops 592 chr1 959988 959989 rs190418699 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 592 chr1 960408 960409 rs4970392 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2386.000000,2622.000000, 0.476438,0.523562, maf-5-some-pop,maf-5-all-pops 592 chr1 960680 960681 rs144619388 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 592 chr1 960940 960941 rs3121554 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1358.000000,3650.000000, 0.271166,0.728834, maf-5-some-pop,maf-5-all-pops 592 chr1 961349 961350 rs3121555 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP, 2 C,T, 3584.000000,1424.000000, 0.715655,0.284345, maf-5-some-pop,maf-5-all-pops 592 chr1 961365 961366 rs185365466 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4948.000000,60.000000, 0.988019,0.011981, 592 chr1 961366 961367 rs113220637 0 + G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 3 1000GENOMES,BUSHMAN,TISHKOFF, 4 A,C,G,T, 65.000000,38.000000,4900.000000,5.000000, 0.012979,0.007588,0.978435,0.000998, 592 chr1 961371 961372 rs114663692 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop 592 chr1 961463 961464 rs3128125 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3654.000000,1354.000000, 0.729633,0.270367, maf-5-some-pop,maf-5-all-pops 592 chr1 961598 961599 rs78583450 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 592 chr1 961604 961605 rs112555755 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 592 chr1 961826 961827 rs3121556 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4186.000000,822.000000, 0.835863,0.164137, maf-5-some-pop 592 chr1 961985 961986 rs111412577 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 238.000000,4770.000000, 0.047524,0.952476, maf-5-some-pop,maf-5-all-pops 592 chr1 962036 962036 rs145258231 0 + - - -/G genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,G, 4777.000000,231.000000, 0.953874,0.046126, 592 chr1 962082 962083 rs139374940 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 592 chr1 962209 962210 rs3128126 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3478.000000,1530.000000, 0.694489,0.305511, maf-5-some-pop,maf-5-all-pops 592 chr1 962605 962606 rs4970393 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2688.000000,2320.000000, 0.536741,0.463259, maf-5-some-pop,maf-5-all-pops 592 chr1 962719 962720 rs28670633 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BGI,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,maf-5-all-pops 592 chr1 962756 962757 rs114948506 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 592 chr1 962829 962830 rs139739296 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 54.000000,4954.000000, 0.010783,0.989217, 592 chr1 962890 962891 rs4970394 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2184.000000,2824.000000, 0.436102,0.563898, maf-5-some-pop,maf-5-all-pops 592 chr1 962939 962940 rs145992853 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 69.000000,4939.000000, 0.013778,0.986222, 592 chr1 963012 963013 rs9442389 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2561.000000,2447.000000, 0.511382,0.488618, maf-5-some-pop,maf-5-all-pops 592 chr1 963337 963338 rs72900404 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 592 chr1 963466 963470 rs201613192 0 + CACT CACT -/CACT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CACT, 53.000000,4955.000000, 0.010583,0.989417, 592 chr1 963660 963661 rs13303147 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,SSAHASNP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 592 chr1 963813 963814 rs114899427 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop,maf-5-all-pops 592 chr1 963944 963945 rs113632379 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 302.000000,4706.000000, 0.060304,0.939696, 592 chr1 963984 963985 rs4413989 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_JCM, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 592 chr1 963985 963986 rs58399787 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, 592 chr1 964229 964230 rs28637280 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSAHASNP, 2 A,G, 576.000000,4432.000000, 0.115016,0.884984, 592 chr1 964283 964284 rs530071434 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 592 chr1 964301 964302 rs540597189 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4760.000000,248.000000, 0.950479,0.049521, 592 chr1 964449 964450 rs113218069 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,GMI, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, 592 chr1 964461 964462 rs552815615 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 150.000000,4858.000000, 0.029952,0.970048, 592 chr1 964839 964840 rs4970343 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,WI_SSAHASNP, 2 C,T, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop 592 chr1 964847 964848 rs4970344 0 + A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,WI_SSAHASNP, 2 A,T, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,maf-5-all-pops 592 chr1 965008 965009 rs71576588 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP, 2 A,G, 2251.000000,2757.000000, 0.449481,0.550519, 592 chr1 965088 965088 rs371849180 0 + - - -/CAG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,CAG, 4907.000000,101.000000, 0.979832,0.020168, 592 chr1 965174 965175 rs28373660 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 A,G, 786.000000,4222.000000, 0.156949,0.843051, maf-5-some-pop 592 chr1 965277 965278 rs28433148 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 C,T, 4468.000000,540.000000, 0.892173,0.107827, 592 chr1 965420 965420 rs530602592 0 + - - -/TGG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TGG, 4770.000000,238.000000, 0.952476,0.047524, 592 chr1 965603 965604 rs28972693 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,BUSHMAN,GMI,HGSV,PJP,SSAHASNP, 2 C,T, 1034.000000,3974.000000, 0.206470,0.793530, 592 chr1 965875 965876 rs111203424 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4091.000000,917.000000, 0.816893,0.183107, 592 chr1 965876 965876 rs370270944 0 + - - -/GT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,GT, 2071.000000,2937.000000, 0.413538,0.586462, 592 chr1 965938 965939 rs28970526 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,BUSHMAN,GMI,SSAHASNP, 2 A,T, 501.000000,4507.000000, 0.100040,0.899960, 592 chr1 966011 966013 rs369815264 0 + GA GA -/GA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,GA, 3779.000000,1229.000000, 0.754593,0.245407, 592 chr1 966078 966079 rs150628606 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,GMI, 2 C,T, 3433.000000,1575.000000, 0.685503,0.314497, 592 chr1 966125 966126 rs546204925 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 592 chr1 966391 966393 rs138206193 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BL,GMI,LUNTER,SSMP, 2 -,TG, 2716.000000,2292.000000, 0.542332,0.457668, 592 chr1 966471 966471 rs575727439 0 + - - -/TG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TG, 3576.000000,1432.000000, 0.714058,0.285942, 592 chr1 967657 967658 rs4970349 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2590.000000,2418.000000, 0.517173,0.482827, maf-5-some-pop,maf-5-all-pops 592 chr1 968017 968017 rs199896438 0 + - - -/C genomic insertion unknown 0 0 intron,near-gene-5 between 1 2 1000GENOMES,LUNTER, 2 -,C, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 968225 968226 rs3121560 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1240.000000,3768.000000, 0.247604,0.752396, maf-5-some-pop,maf-5-all-pops 592 chr1 968325 968326 rs116556814 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 4855.000000,153.000000, 0.969449,0.030551, 592 chr1 968344 968345 rs114490664 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 592 chr1 968944 968945 rs147784721 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 360.000000,4648.000000, 0.071885,0.928115, 592 chr1 969658 969659 rs2710884 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 1222.000000,3786.000000, 0.244010,0.755990, maf-5-some-pop,maf-5-all-pops 592 chr1 969669 969670 rs569113956 0 + C C C/G genomic single unknown 0 0 intron,untranslated-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4936.000000,72.000000, 0.985623,0.014377, 592 chr1 970214 970215 rs9442364 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SC_SNP,SSMP, 2 C,G, 2748.000000,2260.000000, 0.548722,0.451278, maf-5-some-pop,maf-5-all-pops 592 chr1 970416 970417 rs111329619 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,C, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,maf-5-all-pops 592 chr1 970454 970455 rs116522930 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop,maf-5-all-pops 592 chr1 970544 970545 rs567725793 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, 592 chr1 970545 970546 rs530277061 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 592 chr1 970787 970788 rs116010269 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 592 chr1 970835 970836 rs112116228 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 592 chr1 970914 970915 rs115493882 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop 592 chr1 971119 971120 rs138713971 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 592 chr1 971183 971184 rs113132882 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 592 chr1 971223 971224 rs2799055 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 971366 971367 rs2710883 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4557.000000,451.000000, 0.909944,0.090056, maf-5-some-pop 592 chr1 971686 971687 rs116375407 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop 592 chr1 971964 971965 rs116627277 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 592 chr1 971990 971991 rs113338160 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 972179 972180 rs4970350 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2808.000000,2200.000000, 0.560703,0.439297, maf-5-some-pop,maf-5-all-pops 592 chr1 972185 972186 rs78759328 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 972322 972323 rs113178724 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,maf-5-all-pops 592 chr1 972686 972687 rs116780975 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 592 chr1 972751 972752 rs115026561 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 592 chr1 972982 972983 rs9442390 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4662.000000,346.000000, 0.930911,0.069090, 592 chr1 973335 973336 rs2488993 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 973376 973377 rs2465129 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4519.000000,489.000000, 0.902356,0.097644, maf-5-some-pop 592 chr1 973457 973458 rs2465130 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 582.000000,4426.000000, 0.116214,0.883786, maf-5-some-pop 592 chr1 973667 973668 rs2488994 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 590.000000,4418.000000, 0.117812,0.882188, maf-5-some-pop 592 chr1 973858 973859 rs116128075 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 592 chr1 974020 974021 rs72900426 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop 592 chr1 974122 974123 rs10126047 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,WI_SSAHASNP, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 592 chr1 974163 974164 rs113181980 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 974179 974180 rs3121577 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 974198 974199 rs2465131 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 974224 974225 rs2488995 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 974295 974296 rs2488996 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop 592 chr1 974309 974310 rs72900432 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop 592 chr1 974352 974353 rs114753995 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 974355 974356 rs2465132 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop 592 chr1 974390 974391 rs76088616 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 592 chr1 974493 974494 rs2465133 0 + G G G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 527.000000,4481.000000, 0.105232,0.894768, maf-5-some-pop,maf-5-all-pops 592 chr1 974569 974570 rs2465134 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop,maf-5-all-pops 592 chr1 974661 974662 rs2465135 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 454.000000,4554.000000, 0.090655,0.909345, maf-5-some-pop,maf-5-all-pops 592 chr1 974709 974710 rs115805682 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 4946.000000,62.000000, 0.987620,0.012380, 592 chr1 974791 974791 rs71576591 0 + - - -/GG genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER, 2 -,GG, 901.000000,4107.000000, 0.179912,0.820088, 592 chr1 974893 974894 rs3121578 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 969.000000,4039.000000, 0.193490,0.806510, maf-5-some-pop 592 chr1 974987 974988 rs115049241 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop,maf-5-all-pops 592 chr1 975132 975133 rs3121579 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 A,T, 4485.000000,523.000000, 0.895567,0.104433, maf-5-some-pop,maf-5-all-pops 592 chr1 975701 975702 rs9331224 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop 592 chr1 975780 975781 rs116503955 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 592 chr1 975992 976000 rs200311998 0 + ACGTGGGT ACGTGGGT -/ACGTGGGT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,ACGTGGGT, 68.000000,4940.000000, 0.013578,0.986422, 592 chr1 976553 976554 rs191270495 0 + C C C/G genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 4880.000000,128.000000, 0.974441,0.025559, 592 chr1 976628 976629 rs113789806 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4802.000000,206.000000, 0.958866,0.041134, 592 chr1 976962 976963 rs150359724 0 + A A A/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EVA-GONL,EXOME_CHIP,NHLBI-ESP, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 592 chr1 977199 977200 rs60258413 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 G,T, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 977202 977203 rs3121552 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP, 2 C,G, 4491.000000,517.000000, 0.896765,0.103235, 592 chr1 977219 977220 rs144150197 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 592 chr1 977293 977294 rs114521679 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 592 chr1 978045 978046 rs9331225 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 592 chr1 978147 978147 rs370972452 0 + - - -/G genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,G, 4935.000000,73.000000, 0.985423,0.014577, 592 chr1 978973 978974 rs79016973 0 + G G A/G genomic single unknown 0 0 missense exact 1 9 1000GENOMES,BGI,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop 592 chr1 979436 979437 rs151102274 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 592 chr1 979513 979514 rs28484890 0 + C C C/G genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSAHASNP, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 979689 979690 rs115413462 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CLINSEQ_SNP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 150.000000,4858.000000, 0.029952,0.970048, maf-5-some-pop 592 chr1 979747 979748 rs113288277 0 + A A A/T genomic single unknown 0 0 missense exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 592 chr1 979834 979835 rs114389542 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop 592 chr1 979889 979890 rs116273657 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 592 chr1 979936 979937 rs72900439 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 592 chr1 980076 980077 rs116106396 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,TISHKOFF, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 592 chr1 980188 980189 rs114879738 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 592 chr1 980275 980276 rs115449966 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 592 chr1 980439 980440 rs112752525 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 592 chr1 980459 980460 rs3128097 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop 592 chr1 980772 980773 rs75774767 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 980947 980948 rs183108359 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 592 chr1 980955 980956 rs139005472 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,C, 156.000000,4852.000000, 0.031150,0.968850, 592 chr1 980974 980975 rs113849939 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 76.000000,4932.000000, 0.015176,0.984824, 592 chr1 981086 981087 rs3128098 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop 592 chr1 981130 981131 rs9697293 0 + A A A/G genomic single unknown 0 0 missense exact 1 9 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,GMI,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop 592 chr1 981930 981931 rs2465128 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP,YUSUKE, 2 A,G, 1013.000000,3995.000000, 0.202276,0.797724, maf-5-some-pop 592 chr1 981941 981942 rs3813188 0 + C C A/C genomic single unknown 0 0 missense exact 1 7 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SSMP,YUSUKE, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 592 chr1 982212 982213 rs150132566 0 + G G C/G genomic single unknown 0 0 missense exact 1 7 1000GENOMES,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,WARNICH_LAB, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, 592 chr1 982443 982444 rs3128099 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,YUSUKE, 2 A,G, 892.000000,4116.000000, 0.178115,0.821885, maf-5-some-pop 592 chr1 982461 982462 rs3128100 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop 592 chr1 982471 982472 rs116472750 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, 592 chr1 982483 982484 rs3813191 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,YUSUKE, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 592 chr1 982512 982513 rs3128101 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop 592 chr1 982572 982573 rs3813192 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop 592 chr1 982721 982722 rs142416636 0 + A A A/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 592 chr1 982843 982844 rs76264143 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 592 chr1 982940 982941 rs3128102 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4006.000000,1002.000000, 0.799920,0.200080, maf-5-some-pop 592 chr1 982993 982994 rs10267 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 27 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,LEE,NHLBI-ESP,PJP,SC_JCM,SEATTLESEQ,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4186.000000,822.000000, 0.835863,0.164137, maf-5-some-pop 592 chr1 983005 983006 rs75361935 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 592 chr1 983769 983770 rs114691276 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 592 chr1 983924 983925 rs113521698 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 284.000000,4724.000000, 0.056709,0.943291, 592 chr1 984015 984016 rs112285003 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, 592 chr1 984032 984033 rs113822357 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4721.000000,287.000000, 0.942692,0.057308, 592 chr1 984060 984061 rs138543764 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4725.000000,283.000000, 0.943490,0.056510, 592 chr1 984101 984102 rs149267690 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 280.000000,4728.000000, 0.055911,0.944089, 592 chr1 984147 984158 rs569475810 0 + AAAAAAAAAAA AAAAAAAAAAA -/AAAAAAAAAAA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AAAAAAAAAAA, 4610.000000,398.000000, 0.920527,0.079473, 592 chr1 984171 984173 rs140904842 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,HGSV,LUNTER,SSMP, 2 -,AG, 4610.000000,398.000000, 0.920527,0.079473, 592 chr1 984201 984202 rs115499153 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 A,G, 4724.000000,284.000000, 0.943291,0.056709, maf-5-some-pop,maf-5-all-pops 592 chr1 984301 984302 rs9442391 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 2733.000000,2275.000000, 0.545727,0.454273, maf-5-some-pop,maf-5-all-pops 592 chr1 984455 984456 rs188005130 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 592 chr1 984768 984769 rs75767981 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 592 chr1 984846 984847 rs112917612 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 C,G, 306.000000,4702.000000, 0.061102,0.938898, maf-5-some-pop,maf-5-all-pops 592 chr1 984859 984860 rs146377446 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 592 chr1 984887 984888 rs112331531 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop,maf-5-all-pops 592 chr1 985170 985171 rs115019873 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,maf-5-all-pops 592 chr1 985238 985239 rs115192323 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop 592 chr1 985508 985509 rs111638438 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 592 chr1 985752 985753 rs60267685 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 592 chr1 985796 985797 rs142286944 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 592 chr1 985825 985826 rs17160775 0 + G G A/G genomic single unknown 0 0 missense exact 1 9 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SEATTLESEQ,TISHKOFF, 2 A,G, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop,maf-5-all-pops 592 chr1 985899 985900 rs17160776 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,TISHKOFF, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 592 chr1 985998 985999 rs111726760 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 G,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop,maf-5-all-pops 592 chr1 986009 986010 rs116257587 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 C,T, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop,maf-5-all-pops 592 chr1 986284 986285 rs112497350 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop,maf-5-all-pops 592 chr1 986285 986286 rs55707163 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop,maf-5-all-pops 592 chr1 986442 986443 rs2710887 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1059.000000,3949.000000, 0.211462,0.788538, maf-5-some-pop 592 chr1 986736 986737 rs17160781 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SEATTLESEQ, 2 C,T, 396.000000,4612.000000, 0.079074,0.920927, maf-5-some-pop 592 chr1 987199 987200 rs9803031 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1058.000000,3950.000000, 0.211262,0.788738, maf-5-some-pop 592 chr1 987669 987670 rs13303287 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop 592 chr1 987777 987777 rs199613393 0 + - - -/TG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,TG, 4655.000000,353.000000, 0.929513,0.070487, 592 chr1 988015 988016 rs55669479 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,SSMP, 2 C,T, 307.000000,4701.000000, 0.061302,0.938698, maf-5-some-pop,maf-5-all-pops 592 chr1 988057 988061 rs57324184 0 + TAGT TAGT -/TAGT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HGSV,TISHKOFF, 2 -,TAGT, 90.000000,4918.000000, 0.017971,0.982029, 592 chr1 988198 988201 rs370285367 0 + GCA GCA -/GCA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,SSIP,SSMP, 2 -,GCA, 62.000000,4946.000000, 0.012380,0.987620, 592 chr1 988309 988310 rs13303307 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4866.000000,142.000000, 0.971645,0.028355, 592 chr1 988502 988503 rs2799071 0 + A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1056.000000,3952.000000, 0.210863,0.789137, maf-5-some-pop,maf-5-all-pops 592 chr1 988615 988616 rs556961651 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4724.000000,284.000000, 0.943291,0.056709, 592 chr1 988659 988659 rs113523678 0 + - - -/CGTGTCCGCAC genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,TISHKOFF, 2 -,CGTGTCCGCAC, 4654.000000,354.000000, 0.929313,0.070687, 592 chr1 988901 988902 rs74223856 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,ILLUMINA,SSMP, 2 A,C, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 592 chr1 989460 989461 rs9778201 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop 592 chr1 989499 989500 rs72900467 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 A,G, 357.000000,4651.000000, 0.071286,0.928714, maf-5-some-pop 592 chr1 990279 990280 rs4275402 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 21 1000GENOMES,ABI,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSMP, 2 C,T, 2077.000000,2931.000000, 0.414736,0.585264, maf-5-some-pop,maf-5-all-pops 592 chr1 990532 990533 rs4308920 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,ABI,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 A,G, 610.000000,4398.000000, 0.121805,0.878195, maf-5-some-pop,maf-5-all-pops 592 chr1 990686 990687 rs4308921 0 - G G A/C/G/T genomic single unknown 0 0 untranslated-3 exact 1 SingleClassQuadAllelic 6 1000GENOMES,ABI,BUSHMAN,ILLUMINA,JMKIDD_LAB,SC_JCM, 4 A,C,G,T, 232.000000,4776.000000,4776.000000,232.000000, 0.023163,0.476837,0.476837,0.023163, maf-5-some-pop,maf-5-all-pops 592 chr1 990772 990773 rs2799072 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 771.000000,4237.000000, 0.153954,0.846046, maf-5-some-pop 592 chr1 990805 990806 rs2799073 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4238.000000,770.000000, 0.846246,0.153754, maf-5-some-pop 592 chr1 990838 990839 rs13129 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,AFFY,BUSHMAN,CGAP-GAI,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,LEE,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop 592 chr1 990881 990882 rs4587516 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,ABI,ILLUMINA,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 592 chr1 990942 990943 rs28632009 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop,maf-5-all-pops 592 chr1 990983 990984 rs8014 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,LEE,PJP,SC_JCM,SEQUENOM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4619.000000,389.000000, 0.922324,0.077676, maf-5-some-pop 592 chr1 991722 991723 rs146457270 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 592 chr1 991723 991724 rs3121562 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 1133.000000,3875.000000, 0.226238,0.773762, maf-5-some-pop 592 chr1 991794 991810 rs569403921 0 + ACGTGTGGGTGCGGGT ACGTGTGGGTGCGGGT -/ACGTGTGGGTGCGGGT genomic deletion unknown 0 0 near-gene-3 range 1 1 1000GENOMES, 2 -,ACGTGTGGGTGCGGGT, 147.000000,4861.000000, 0.029353,0.970647, 592 chr1 991859 991860 rs115193727 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 592 chr1 991870 991871 rs111984447 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop,maf-5-all-pops 592 chr1 991903 991904 rs79743109 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,SSMP, 2 C,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop,maf-5-all-pops 592 chr1 991981 991982 rs2710885 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 C,T, 4612.000000,396.000000, 0.920927,0.079073, 592 chr1 992041 992042 rs3121564 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 414.000000,4594.000000, 0.082668,0.917332, 592 chr1 992048 992048 rs112111627 0 + - - -/GT genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,LUNTER, 2 -,GT, 1591.000000,3417.000000, 0.317692,0.682308, 592 chr1 992083 992084 rs2710886 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, 592 chr1 992093 992094 rs2799074 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, maf-5-some-pop 592 chr1 992264 992265 rs115037261 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 592 chr1 992326 992327 rs2245754 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop 592 chr1 992510 992511 rs57933167 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,GMI,HGSV,SSMP,TISHKOFF, 2 C,G, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop 592 chr1 992818 992819 rs9331226 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2696.000000,2312.000000, 0.538339,0.461661, maf-5-some-pop,maf-5-all-pops 592 chr1 992840 992842 rs150915126 0 + TT TT -/TT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,BL, 2 -,TT, 4597.000000,411.000000, 0.917931,0.082069, 592 chr1 992843 992844 rs9777717 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,BGI,BL,GMI, 2 A,T, 648.000000,4360.000000, 0.129393,0.870607, 592 chr1 992851 992854 rs567708055 0 + AAG AAG -/AAG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AAG, 320.000000,4688.000000, 0.063898,0.936102, 592 chr1 992852 992854 rs199540740 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,WARNICH_LAB, 2 -,AG, 3914.000000,1094.000000, 0.781550,0.218450, 592 chr1 993027 993028 rs144629300 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 592 chr1 993133 993133 rs537993071 0 + - - -/A genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,SSIP, 2 -,A, 4525.000000,483.000000, 0.903554,0.096446, 592 chr1 993262 993263 rs144099956 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 4933.000000,75.000000, 0.985024,0.014976, 592 chr1 993340 993341 rs112238808 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop,maf-5-all-pops 592 chr1 993359 993360 rs13303240 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2492.000000,2516.000000, 0.497604,0.502396, 592 chr1 993382 993383 rs13303023 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 592 chr1 993580 993581 rs72900475 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 385.000000,4623.000000, 0.076877,0.923123, maf-5-some-pop,maf-5-all-pops 592 chr1 993858 993859 rs72900480 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop,maf-5-all-pops 592 chr1 993986 993987 rs59546974 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 712.000000,4296.000000, 0.142173,0.857827, maf-5-some-pop,maf-5-all-pops 592 chr1 994331 994332 rs115803283 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop,maf-5-all-pops 592 chr1 994390 994391 rs2488991 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,TISHKOFF, 2 G,T, 1133.000000,3875.000000, 0.226238,0.773762, maf-5-some-pop 592 chr1 994395 994396 rs200864565 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,G, 325.000000,4683.000000, 0.064896,0.935104, 592 chr1 994716 994717 rs9697751 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4303.000000,705.000000, 0.859225,0.140775, maf-5-some-pop,maf-5-all-pops 592 chr1 994769 994770 rs9697651 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,SSMP,WI_SSAHASNP, 2 A,C, 359.000000,4649.000000, 0.071685,0.928315, 592 chr1 995020 995020 rs557696470 0 + - - -/CGGGGCGTGGCC genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,CGGGGCGTGGCC, 4671.000000,337.000000, 0.932708,0.067292, 592 chr1 995305 995306 rs202014140 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,T, 310.000000,4698.000000, 0.061901,0.938099, 592 chr1 995310 995311 rs115307538 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop,maf-5-all-pops 592 chr1 995480 995481 rs9442393 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2485.000000,2523.000000, 0.496206,0.503794, maf-5-some-pop 592 chr1 996183 996184 rs9778016 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB, 2 A,G, 381.000000,4627.000000, 0.076078,0.923922, maf-5-some-pop,maf-5-all-pops 592 chr1 996247 996248 rs28479311 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4474.000000,534.000000, 0.893371,0.106629, maf-5-some-pop 592 chr1 996284 996285 rs112576163 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 370.000000,4638.000000, 0.073882,0.926118, maf-5-some-pop,maf-5-all-pops 592 chr1 996649 996650 rs145995126 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 592 chr1 996893 996894 rs111280189 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop,maf-5-all-pops 592 chr1 997080 997081 rs116307907 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 592 chr1 997436 997462 rs145846158 0 + TCCCTCCCTTGTCCCCGTTCCCTCCG TCCCTCCCTTGTCCCCGTTCCCTCCG -/TCCCTCCCTTGTCCCCGTTCCCTCCG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,TCCCTCCCTTGTCCCCGTTCCCTCCG, 4121.000000,887.000000, 0.822883,0.177117, 592 chr1 997769 997770 rs113991671 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP, 2 -,G, 1095.000000,3913.000000, 0.218650,0.781350, 592 chr1 998275 998276 rs60853205 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 350.000000,4658.000000, 0.069888,0.930112, maf-5-some-pop,maf-5-all-pops 592 chr1 998394 998395 rs7526076 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop,maf-5-all-pops 592 chr1 998500 998501 rs3813193 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 1035.000000,3973.000000, 0.206669,0.793331, maf-5-some-pop,maf-5-all-pops 592 chr1 998577 998578 rs7520893 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF,WI_SSAHASNP, 2 C,T, 314.000000,4694.000000, 0.062700,0.937300, maf-5-some-pop,maf-5-all-pops 592 chr1 998581 998582 rs3813194 0 + G G C/G genomic single unknown 0 0 splice-5 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 2427.000000,2581.000000, 0.484625,0.515375, maf-5-some-pop 592 chr1 998635 998636 rs72900489 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4929.000000,79.000000, 0.984225,0.015775, 592 chr1 998715 998716 rs117603808 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 592 chr1 998873 998874 rs7526509 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,T, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop,maf-5-all-pops 592 chr1 999409 999410 rs114115960 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 592 chr1 999648 999649 rs6683745 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop,maf-5-all-pops 592 chr1 999997 999998 rs112150631 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 592 chr1 1000909 1000910 rs79750022 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,EVA-GONL, 2 C,T, 4760.000000,248.000000, 0.950479,0.049521, maf-5-some-pop,maf-5-all-pops 592 chr1 1001176 1001177 rs4970401 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3655.000000,1353.000000, 0.729832,0.270168, 592 chr1 1001269 1001270 rs151100994 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 592 chr1 1001289 1001290 rs6665667 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4714.000000,294.000000, 0.941294,0.058706, 592 chr1 1002386 1002387 rs74048003 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3783.000000,1225.000000, 0.755391,0.244609, maf-5-some-pop,maf-5-all-pops 592 chr1 1002433 1002434 rs11260596 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3083.000000,1925.000000, 0.615615,0.384385, maf-5-some-pop,maf-5-all-pops 592 chr1 1002538 1002539 rs60442576 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1718.000000,3290.000000, 0.343051,0.656949, maf-5-some-pop,maf-5-all-pops 592 chr1 1002830 1002831 rs76266214 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BGI,EVA-GONL,SSMP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop,maf-5-all-pops 592 chr1 1002931 1002932 rs4246502 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 C,G, 875.000000,4133.000000, 0.174720,0.825280, maf-5-some-pop,maf-5-all-pops 592 chr1 1003052 1003053 rs4074992 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2621.000000,2387.000000, 0.523363,0.476637, maf-5-some-pop,maf-5-all-pops 592 chr1 1004201 1004202 rs61766321 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 2335.000000,2673.000000, 0.466254,0.533746, maf-5-some-pop,maf-5-all-pops 592 chr1 1004203 1004204 rs61766322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 2335.000000,2673.000000, 0.466254,0.533746, maf-5-some-pop,maf-5-all-pops 592 chr1 1004330 1004331 rs113592356 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 592 chr1 1004389 1004389 rs138373747 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 2312.000000,2696.000000, 0.461661,0.538339, 592 chr1 1004399 1004400 rs185439542 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 99.000000,4909.000000, 0.019768,0.980232, 592 chr1 1004459 1004460 rs577718570 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 1004945 1004946 rs4073175 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop,maf-5-all-pops 592 chr1 1004956 1004957 rs4073176 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2756.000000,2252.000000, 0.550319,0.449681, maf-5-some-pop,maf-5-all-pops 592 chr1 1004979 1004980 rs4073177 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2756.000000,2252.000000, 0.550319,0.449681, maf-5-some-pop,maf-5-all-pops 592 chr1 1005805 1005806 rs3934834 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PAGE_STUDY,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3889.000000,1119.000000, 0.776558,0.223442, maf-5-some-pop,maf-5-all-pops,microattr-tpa 592 chr1 1006068 1006069 rs55918415 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop,maf-5-all-pops 592 chr1 1006149 1006150 rs116413370 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 592 chr1 1006222 1006223 rs9442394 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2740.000000,2268.000000, 0.547125,0.452875, maf-5-some-pop,maf-5-all-pops 592 chr1 1006480 1006481 rs72900494 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop,maf-5-all-pops 592 chr1 1006512 1006513 rs72900497 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 219.000000,4789.000000, 0.043730,0.956270, 592 chr1 1006803 1006804 rs142774611 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 1006989 1006990 rs4326571 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4088.000000,920.000000, 0.816294,0.183706, maf-5-some-pop,maf-5-all-pops 592 chr1 1007202 1007203 rs4633229 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 795.000000,4213.000000, 0.158746,0.841254, maf-5-some-pop,maf-5-all-pops 592 chr1 1007221 1007222 rs71628928 0 + G G G/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 G,T, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop,maf-5-all-pops 592 chr1 1007431 1007432 rs4333796 0 + G G A/G genomic single unknown 0 0 missense exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2665.000000,2343.000000, 0.532149,0.467851, maf-5-some-pop,maf-5-all-pops 592 chr1 1007432 1007433 rs185263154 0 + C C C/T genomic single unknown 0 0 missense exact 1 1 1000GENOMES, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 1008193 1008194 rs56945342 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 592 chr1 1008627 1008628 rs140108519 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 592 chr1 1008991 1008992 rs114845730 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop,maf-5-all-pops 592 chr1 1009222 1009223 rs112570765 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, 592 chr1 1009233 1009234 rs9442366 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2900.000000,2108.000000, 0.579073,0.420927, maf-5-some-pop,maf-5-all-pops 592 chr1 1009240 1009241 rs116110450 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 592 chr1 1009440 1009441 rs75479766 0 + G G A/G genomic single unknown 0 0 untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 592 chr1 1009477 1009478 rs9442367 0 + G G C/G genomic single unknown 0 0 untranslated-5 exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4073.000000,935.000000, 0.813299,0.186701, maf-5-some-pop,maf-5-all-pops 592 chr1 1009725 1009725 rs143529814 0 + - - -/GGTCATGCT genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,LUNTER, 2 -,GGTCATGCT, 4753.000000,255.000000, 0.949081,0.050919, 592 chr1 1009822 1009823 rs12752391 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 995.000000,4013.000000, 0.198682,0.801318, maf-5-some-pop,maf-5-all-pops 592 chr1 1010117 1010118 rs80254000 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 592 chr1 1010208 1010209 rs76128928 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop 592 chr1 1010258 1010259 rs75511034 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 592 chr1 1010716 1010717 rs9442368 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1954.000000,3054.000000, 0.390176,0.609824, maf-5-some-pop,maf-5-all-pops 592 chr1 1010829 1010830 rs78919234 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4752.000000,256.000000, 0.948882,0.051118, maf-5-some-pop,maf-5-all-pops 592 chr1 1010858 1010859 rs112343466 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop,maf-5-all-pops 592 chr1 1010870 1010871 rs111940947 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop,maf-5-all-pops 592 chr1 1011087 1011088 rs60561655 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BL,BUSHMAN,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,G, 2711.000000,2297.000000, 0.541334,0.458666, 592 chr1 1011094 1011095 rs11810785 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP, 2 A,G, 413.000000,4595.000000, 0.082468,0.917532, maf-5-some-pop 592 chr1 1011424 1011425 rs137870362 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 397.000000,4611.000000, 0.079273,0.920727, 592 chr1 1011466 1011467 rs201984871 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,GMI, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 592 chr1 1011560 1011561 rs114079151 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 592 chr1 1012438 1012439 rs574957901 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 845.000000,4163.000000, 0.168730,0.831270, 592 chr1 1012482 1012483 rs78463107 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,SSMP, 2 G,T, 1166.000000,3842.000000, 0.232827,0.767173, 592 chr1 1012516 1012517 rs79860808 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,SSMP, 2 C,T, 1506.000000,3502.000000, 0.300719,0.699281, 592 chr1 1012546 1012547 rs368701521 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 C,T, 341.000000,4667.000000, 0.068091,0.931909, 592 chr1 1012624 1012625 rs529739118 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 3683.000000,1325.000000, 0.735423,0.264577, 592 chr1 1012630 1012631 rs374305877 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,T, 3703.000000,1305.000000, 0.739417,0.260583, 592 chr1 1012662 1012663 rs373871345 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 G,T, 871.000000,4137.000000, 0.173922,0.826078, 592 chr1 1012858 1012859 rs532441972 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 78.000000,4930.000000, 0.015575,0.984425, 592 chr1 1012962 1012963 rs78226968 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 G,T, 110.000000,4898.000000, 0.021965,0.978035, 592 chr1 1013428 1013429 rs367617513 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 151.000000,4857.000000, 0.030152,0.969848, 592 chr1 1014835 1014836 rs12401605 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 2279.000000,2729.000000, 0.455072,0.544928, maf-5-some-pop,maf-5-all-pops 592 chr1 1014863 1014864 rs12411041 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 A,T, 2952.000000,2056.000000, 0.589457,0.410543, maf-5-some-pop,maf-5-all-pops 592 chr1 1014954 1014955 rs4970402 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,WI_SSAHASNP, 2 C,G, 132.000000,4876.000000, 0.026358,0.973642, 592 chr1 1015256 1015257 rs9442369 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1912.000000,3096.000000, 0.381789,0.618211, maf-5-some-pop,maf-5-all-pops 592 chr1 1015550 1015551 rs9442370 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2344.000000,2664.000000, 0.468051,0.531949, maf-5-some-pop,maf-5-all-pops 592 chr1 1015717 1015718 rs57133173 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,JMKIDD_LAB, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,maf-5-all-pops 592 chr1 1015816 1015817 rs12746483 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3814.000000,1194.000000, 0.761581,0.238419, maf-5-some-pop,maf-5-all-pops 592 chr1 1016382 1016383 rs12092234 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SC_SNP, 2 C,T, 305.000000,4703.000000, 0.060903,0.939097, maf-5-some-pop,maf-5-all-pops 592 chr1 1016532 1016532 rs113519695 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,G, 4733.000000,275.000000, 0.945088,0.054912, 592 chr1 1016626 1016627 rs112489938 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 592 chr1 1016871 1016872 rs6604975 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF,WI_SSAHASNP, 2 A,G, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop,maf-5-all-pops 592 chr1 1016966 1016967 rs6604976 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF,WI_SSAHASNP, 2 A,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop,maf-5-all-pops 592 chr1 1017169 1017170 rs3766193 0 - C C C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 592 chr1 1017215 1017216 rs6667248 0 + A A A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 9 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop,maf-5-all-pops 592 chr1 1017597 1017598 rs12096277 0 + A A A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop,maf-5-all-pops 592 chr1 1017705 1017706 rs74048004 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,ILLUMINA-UK, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop,maf-5-all-pops 592 chr1 1017896 1017897 rs115869840 0 + C C A/C genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop,maf-5-all-pops 592 chr1 1018062 1018063 rs138543362 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 592 chr1 1018143 1018144 rs9442395 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 2693.000000,2315.000000, 0.537740,0.462260, maf-5-some-pop,maf-5-all-pops 592 chr1 1018597 1018598 rs77980035 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 592 chr1 1018774 1018775 rs144363468 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 592 chr1 1019174 1019175 rs2298215 0 - C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 592 chr1 1019179 1019180 rs9442396 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3008.000000,2000.000000, 0.600639,0.399361, maf-5-some-pop,maf-5-all-pops 592 chr1 1019985 1019986 rs184920447 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 592 chr1 1020285 1020286 rs80085251 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop,maf-5-all-pops 592 chr1 1020405 1020406 rs9442397 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3573.000000,1435.000000, 0.713458,0.286542, maf-5-some-pop,maf-5-all-pops 592 chr1 1020699 1020700 rs78152835 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 293.000000,4715.000000, 0.058506,0.941494, maf-5-some-pop 592 chr1 1020713 1020714 rs7549954 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop,maf-5-all-pops 592 chr1 1020882 1020883 rs139568537 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 146.000000,4862.000000, 0.029153,0.970847, 592 chr1 1020923 1020923 rs70949550 0 + - - -/G genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,TISHKOFF, 2 -,G, 1482.000000,3526.000000, 0.295927,0.704073, 592 chr1 1021582 1021583 rs10907178 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4138.000000,870.000000, 0.826278,0.173722, maf-5-some-pop,maf-5-all-pops 592 chr1 1021657 1021658 rs11260588 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 592 chr1 1022036 1022037 rs6701114 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2070.000000,2938.000000, 0.413339,0.586661, maf-5-some-pop,maf-5-all-pops 592 chr1 1022128 1022129 rs115375339 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop,maf-5-all-pops 592 chr1 1022153 1022154 rs115057577 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 592 chr1 1022200 1022201 rs138512905 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 592 chr1 1022975 1022976 rs61743004 0 + G G C/G genomic single by-frequency 0.064444 0.167538 coding-synon,ncRNA exact 1 1 CORNELL, 2 C,G, 58.000000,2.000000, 0.966667,0.033333, 592 chr1 1023113 1023114 rs61766340 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,ILLUMINA, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 592 chr1 1023309 1023310 rs11260589 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 950.000000,4058.000000, 0.189696,0.810304, maf-5-some-pop,maf-5-all-pops 592 chr1 1023787 1023788 rs12132100 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4257.000000,751.000000, 0.850040,0.149960, maf-5-some-pop,maf-5-all-pops 592 chr1 1024478 1024479 rs74443381 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 592 chr1 1024783 1024784 rs75864872 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,ILLUMINA, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 592 chr1 1025269 1025270 rs72631896 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 592 chr1 1025300 1025301 rs9442400 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop 592 chr1 1025358 1025359 rs80125497 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 116.000000,2.000000, 0.983051,0.016949, 592 chr1 1025858 1025859 rs28469423 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSAHASNP,TISHKOFF, 2 C,G, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,maf-5-all-pops 592 chr1 1025907 1025908 rs78662953 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 94.000000,4914.000000, 0.018770,0.981230, 592 chr1 1026070 1026071 rs112305311 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA, 2 A,C, 4879.000000,129.000000, 0.974241,0.025759, 592 chr1 1026427 1026428 rs116334314 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 592 chr1 1026706 1026707 rs4074137 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL, 2 A,C, 3140.000000,1868.000000, 0.626997,0.373003, maf-5-some-pop 592 chr1 1026800 1026801 rs4562563 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSAHASNP, 2 A,T, 3138.000000,1870.000000, 0.626597,0.373403, maf-5-some-pop,maf-5-all-pops 592 chr1 1027069 1027070 rs11260590 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop,maf-5-all-pops 592 chr1 1027123 1027124 rs190642928 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 592 chr1 1027310 1027312 rs5772036 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,AG, 304.000000,4704.000000, 0.060703,0.939297, 592 chr1 1027723 1027724 rs115495822 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 592 chr1 1027734 1027735 rs78152184 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 592 chr1 1027845 1027846 rs76994018 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 1547.000000,3461.000000, 0.308906,0.691094, maf-5-some-pop,maf-5-all-pops 592 chr1 1028258 1028259 rs12077244 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4025.000000,983.000000, 0.803714,0.196286, maf-5-some-pop,maf-5-all-pops 592 chr1 1028303 1028304 rs114918391 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 592 chr1 1028804 1028805 rs75878198 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 592 chr1 1029804 1029805 rs6689308 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3427.000000,1581.000000, 0.684305,0.315695, maf-5-some-pop,maf-5-all-pops 592 chr1 1030314 1030315 rs58394566 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 592 chr1 1030373 1030374 rs12731175 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 371.000000,4637.000000, 0.074082,0.925919, maf-5-some-pop 592 chr1 1030632 1030633 rs6678318 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1535.000000,3473.000000, 0.306510,0.693490, maf-5-some-pop,maf-5-all-pops 592 chr1 1030900 1030901 rs75493061 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 592 chr1 1031059 1031060 rs7545952 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4419.000000,589.000000, 0.882388,0.117612, maf-5-some-pop 592 chr1 1031137 1031138 rs6693112 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,HGSV, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 592 chr1 1031340 1031341 rs114586091 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 592 chr1 1031539 1031540 rs9651273 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 591.000000,4417.000000, 0.118011,0.881989, maf-5-some-pop 592 chr1 1031972 1031973 rs9651270 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3452.000000,1556.000000, 0.689297,0.310703, maf-5-some-pop,maf-5-all-pops 592 chr1 1031976 1031977 rs9651271 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 A,T, 4354.000000,654.000000, 0.869409,0.130591, maf-5-some-pop,maf-5-all-pops 592 chr1 1032164 1032165 rs12027296 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,maf-5-all-pops 592 chr1 1032183 1032184 rs9651272 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 656.000000,4352.000000, 0.130990,0.869010, maf-5-some-pop 592 chr1 1032387 1032388 rs71628929 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 373.000000,4635.000000, 0.074481,0.925519, maf-5-some-pop,maf-5-all-pops 592 chr1 1032953 1032954 rs6699750 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 A,G, 3439.000000,1569.000000, 0.686701,0.313299, maf-5-some-pop,maf-5-all-pops 592 chr1 1033595 1033596 rs6604964 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1561.000000,3447.000000, 0.311701,0.688299, 592 chr1 1033625 1033626 rs6604965 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3624.000000,1384.000000, 0.723642,0.276358, maf-5-some-pop,maf-5-all-pops 592 chr1 1033669 1033670 rs6604966 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1582.000000,3426.000000, 0.315895,0.684105, maf-5-some-pop,maf-5-all-pops 592 chr1 1033679 1033680 rs6604967 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1561.000000,3447.000000, 0.311701,0.688299, maf-5-some-pop,maf-5-all-pops 592 chr1 1033993 1033994 rs6698368 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3448.000000,1560.000000, 0.688498,0.311502, maf-5-some-pop,maf-5-all-pops 592 chr1 1033998 1033999 rs4970353 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2298.000000,2710.000000, 0.458866,0.541134, maf-5-some-pop 592 chr1 1034199 1034200 rs77977351 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1560.000000,3448.000000, 0.311502,0.688498, maf-5-some-pop,maf-5-all-pops 592 chr1 1034242 1034243 rs79211741 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4278.000000,730.000000, 0.854233,0.145767, maf-5-some-pop,maf-5-all-pops 592 chr1 1034471 1034472 rs549140997 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 592 chr1 1034498 1034499 rs111531431 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,GMI,SSMP, 2 G,T, 3441.000000,1567.000000, 0.687101,0.312899, 592 chr1 1034532 1034535 rs577616292 0 + TAT TAT -/TAT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TAT, 101.000000,4907.000000, 0.020168,0.979832, 592 chr1 1034536 1034537 rs74588600 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP, 2 A,G, 4783.000000,225.000000, 0.955072,0.044928, 592 chr1 1034568 1034569 rs113840254 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 A,G, 4789.000000,219.000000, 0.956270,0.043730, 592 chr1 1034688 1034689 rs113289547 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,GMI,SSMP, 2 G,T, 1536.000000,3472.000000, 0.306709,0.693291, 592 chr1 1034720 1034721 rs74048009 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,GMI,ILLUMINA-UK,SSMP, 2 C,T, 1512.000000,3496.000000, 0.301917,0.698083, 592 chr1 1034836 1034837 rs12753878 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSAHASNP,SSMP, 2 G,T, 3460.000000,1548.000000, 0.690895,0.309105, 592 chr1 1034875 1034876 rs528477953 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 592 chr1 1034927 1034928 rs201161034 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,T, 4211.000000,797.000000, 0.840855,0.159145, 592 chr1 1034928 1034929 rs202164840 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 797.000000,4211.000000, 0.159145,0.840855, 592 chr1 1035804 1035805 rs12759295 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 808.000000,4200.000000, 0.161342,0.838658, maf-5-some-pop,maf-5-all-pops 592 chr1 1036589 1036590 rs10158726 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,WUGSC_SSAHASNP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 592 chr1 1036600 1036601 rs72910156 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, 592 chr1 1036816 1036817 rs61766341 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 538.000000,4470.000000, 0.107428,0.892572, maf-5-some-pop,maf-5-all-pops 592 chr1 1036859 1036860 rs11579922 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,C, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops 592 chr1 1036958 1036959 rs11579015 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 786.000000,4222.000000, 0.156949,0.843051, maf-5-some-pop,maf-5-all-pops 592 chr1 1037046 1037047 rs12134754 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop,maf-5-all-pops 592 chr1 1037302 1037303 rs11260592 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1415.000000,3593.000000, 0.282548,0.717452, maf-5-some-pop,maf-5-all-pops 592 chr1 1037312 1037313 rs11260593 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3551.000000,1457.000000, 0.709065,0.290935, maf-5-some-pop,maf-5-all-pops 592 chr1 1037366 1037367 rs11260594 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1349.000000,3659.000000, 0.269369,0.730631, 592 chr1 1038087 1038088 rs66622470 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1417.000000,3591.000000, 0.282947,0.717053, 592 chr1 1038333 1038334 rs147151733 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 592 chr1 1038976 1038977 rs9729587 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,SSAHASNP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 592 chr1 1038997 1039000 rs71576598 0 + CTC CTC -/CTC genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,CTC, 1416.000000,3592.000000, 0.282748,0.717252, 592 chr1 1039097 1039098 rs11260595 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 592 chr1 1039184 1039185 rs12040819 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4260.000000,748.000000, 0.850639,0.149361, maf-5-some-pop 592 chr1 1039267 1039268 rs9329410 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1418.000000,3590.000000, 0.283147,0.716853, maf-5-some-pop,maf-5-all-pops 592 chr1 1039533 1039534 rs111420185 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4813.000000,195.000000, 0.961062,0.038938, 592 chr1 1039816 1039817 rs11581598 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3590.000000,1418.000000, 0.716853,0.283147, maf-5-some-pop,maf-5-all-pops 592 chr1 1039856 1039857 rs74464172 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, 592 chr1 1039952 1039953 rs75307222 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 592 chr1 1040025 1040026 rs6671356 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 1417.000000,3591.000000, 0.282947,0.717053, maf-5-some-pop,maf-5-all-pops 592 chr1 1040417 1040418 rs77147003 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 592 chr1 1040471 1040472 rs6664124 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3590.000000,1418.000000, 0.716853,0.283147, maf-5-some-pop,maf-5-all-pops 592 chr1 1040592 1040593 rs76287845 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, 592 chr1 1040793 1040794 rs6687681 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1408.000000,3600.000000, 0.281150,0.718850, maf-5-some-pop,maf-5-all-pops 592 chr1 1040823 1040824 rs6656379 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop,maf-5-all-pops 592 chr1 1040885 1040885 rs112666407 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BUSHMAN, 2 -,A, 4925.000000,83.000000, 0.983427,0.016573, 592 chr1 1040939 1040940 rs6702072 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 3589.000000,1419.000000, 0.716653,0.283347, maf-5-some-pop,maf-5-all-pops 592 chr1 1040984 1040985 rs6697379 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 3589.000000,1419.000000, 0.716653,0.283347, maf-5-some-pop,maf-5-all-pops 592 chr1 1041119 1041119 rs71576600 0 + - - -/GGCGTGGT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,HUMANGENOME_JCVI,LUNTER, 2 -,GGCGTGGT, 3592.000000,1416.000000, 0.717252,0.282748, 592 chr1 1041365 1041366 rs114671414 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 592 chr1 1041699 1041700 rs6604968 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops 592 chr1 1041785 1041786 rs6604969 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1420.000000,3588.000000, 0.283546,0.716454, maf-5-some-pop,maf-5-all-pops 592 chr1 1042026 1042028 rs112018535 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,CA, 72.000000,4936.000000, 0.014377,0.985623, 592 chr1 1042058 1042059 rs114521263 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 592 chr1 1042377 1042378 rs12754457 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3580.000000,1428.000000, 0.714856,0.285144, maf-5-some-pop,maf-5-all-pops 592 chr1 1042393 1042394 rs116111284 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 592 chr1 1042482 1042483 rs12733365 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3589.000000,1419.000000, 0.716653,0.283347, maf-5-some-pop,maf-5-all-pops 592 chr1 1042526 1042527 rs12729537 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 656.000000,4352.000000, 0.130990,0.869010, maf-5-some-pop,maf-5-all-pops 592 chr1 1042672 1042673 rs57879151 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,T, 3570.000000,1438.000000, 0.712859,0.287141, 592 chr1 1042818 1042819 rs11584516 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 592 chr1 1042926 1042927 rs4970354 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3591.000000,1417.000000, 0.717053,0.282947, maf-5-some-pop,maf-5-all-pops 592 chr1 1043052 1043053 rs4970355 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3591.000000,1417.000000, 0.717053,0.282947, 592 chr1 1043218 1043218 rs201697421 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,TISHKOFF, 2 -,T, 4939.000000,69.000000, 0.986222,0.013778, 592 chr1 1043261 1043262 rs4970356 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1417.000000,3591.000000, 0.282947,0.717053, 592 chr1 1043621 1043622 rs6697678 0 + G G A/G genomic single by-cluster,by-frequency,by-2hit-2allele 0.42 0.183303 intron exact 1 2 BCM_SSAHASNP,ENSEMBL, 2 A,G, 7.000000,3.000000, 0.700000,0.300000, 592 chr1 1043623 1043624 rs6666617 0 + T T C/T genomic single by-cluster,by-frequency,by-2hit-2allele 0.42 0.183303 intron exact 1 2 BCM_SSAHASNP,ENSEMBL, 2 C,T, 7.000000,3.000000, 0.700000,0.300000, 592 chr1 1043736 1043737 rs76099452 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 871.000000,4137.000000, 0.173922,0.826078, 592 chr1 1043742 1043743 rs12751333 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP, 2 C,T, 1335.000000,3673.000000, 0.266573,0.733427, maf-5-some-pop,maf-5-all-pops 592 chr1 1043887 1043888 rs533133628 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 592 chr1 1043899 1043900 rs36030198 0 - C C A/G genomic single by-cluster,by-frequency 0.48 0.09798 intron exact 1 4 ABI,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 A,G, 4.000000,6.000000, 0.400000,0.600000, 592 chr1 1044086 1044087 rs66479107 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 A,G, 1411.000000,3597.000000, 0.281749,0.718251, 592 chr1 1044143 1044144 rs71509467 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HUMANGENOME_JCVI, 2 C,T, 1192.000000,3816.000000, 0.238019,0.761981, 592 chr1 1044241 1044242 rs556271820 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1266.000000,3742.000000, 0.252796,0.747204, 592 chr1 1044318 1044319 rs80109121 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ENSEMBL, 2 C,T, 3969.000000,1039.000000, 0.792532,0.207468, 592 chr1 1044366 1044367 rs59036606 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP, 2 A,G, 1419.000000,3589.000000, 0.283347,0.716653, 592 chr1 1044423 1044424 rs57107904 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,SSMP, 2 C,T, 1415.000000,3593.000000, 0.282548,0.717452, 592 chr1 1045179 1045180 rs75048257 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 69.000000,4939.000000, 0.013778,0.986222, 592 chr1 1045472 1045473 rs11586034 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop,maf-5-all-pops 592 chr1 1045537 1045538 rs11811175 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 592 chr1 1045605 1045606 rs12080505 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop,maf-5-all-pops 592 chr1 1045838 1045839 rs78242240 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 592 chr1 1045870 1045871 rs12047655 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4761.000000,247.000000, 0.950679,0.049321, maf-5-some-pop,maf-5-all-pops 592 chr1 1046072 1046073 rs11590188 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1222.000000,3786.000000, 0.244010,0.755990, maf-5-some-pop,maf-5-all-pops 592 chr1 1046163 1046164 rs6666280 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3594.000000,1414.000000, 0.717652,0.282348, maf-5-some-pop,maf-5-all-pops 592 chr1 1046716 1046717 rs34820586 0 - G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 592 chr1 1046860 1046861 rs12723165 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop,maf-5-all-pops 592 chr1 1047019 1047020 rs76722543 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 592 chr1 1047027 1047028 rs115393237 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 592 chr1 1047152 1047153 rs115898821 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 592 chr1 1047332 1047333 rs74721821 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop,maf-5-all-pops 592 chr1 1047980 1047981 rs11584392 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop 592 chr1 1048500 1048501 rs7518814 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1220.000000,3788.000000, 0.243610,0.756390, 592 chr1 1048569 1048570 rs576270230 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 592 chr1 1048570 1048571 rs7534657 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3788.000000,1220.000000, 0.756390,0.243610, 593 chr1 1048639 1048640 rs111483565 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop,maf-5-all-pops 593 chr1 1048723 1048724 rs72892214 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4473.000000,535.000000, 0.893171,0.106829, maf-5-some-pop,maf-5-all-pops 593 chr1 1048954 1048955 rs4970405 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 4454.000000,554.000000, 0.889377,0.110623, maf-5-some-pop 593 chr1 1048988 1048989 rs4970406 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop,maf-5-all-pops 593 chr1 1049320 1049321 rs187044284 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 80.000000,4928.000000, 0.015974,0.984026, 593 chr1 1049382 1049383 rs191490653 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 593 chr1 1049522 1049523 rs12093451 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop,maf-5-all-pops 593 chr1 1050148 1050149 rs57323758 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop,maf-5-all-pops 593 chr1 1050263 1050264 rs114053014 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 593 chr1 1050477 1050478 rs116463471 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 4937.000000,71.000000, 0.985823,0.014177, 593 chr1 1050546 1050546 rs573248991 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,T, 4285.000000,723.000000, 0.855631,0.144369, 593 chr1 1050700 1050701 rs72892220 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 445.000000,4563.000000, 0.088858,0.911142, maf-5-some-pop,maf-5-all-pops 593 chr1 1050998 1050999 rs538430583 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4382.000000,626.000000, 0.875000,0.125000, 593 chr1 1050999 1051000 rs555334823 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 626.000000,4382.000000, 0.125000,0.875000, 593 chr1 1051062 1051063 rs575055657 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 524.000000,4484.000000, 0.104633,0.895367, 593 chr1 1051683 1051684 rs72892222 0 + A A A/C genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 4320.000000,688.000000, 0.862620,0.137380, maf-5-some-pop,maf-5-all-pops 593 chr1 1051868 1051869 rs6658634 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL, 2 C,G, 445.000000,4563.000000, 0.088858,0.911142, 593 chr1 1051881 1051882 rs543813206 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSIP, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 593 chr1 1052107 1052108 rs6673257 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BCM_SSAHASNP,ILLUMINA, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop,maf-5-all-pops 593 chr1 1052371 1052372 rs112308346 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop,maf-5-all-pops 593 chr1 1052945 1052946 rs12755848 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4314.000000,694.000000, 0.861422,0.138578, maf-5-some-pop,maf-5-all-pops 593 chr1 1052986 1052987 rs113032206 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 593 chr1 1053384 1053385 rs4970408 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1642.000000,3366.000000, 0.327875,0.672125, maf-5-some-pop 593 chr1 1053451 1053452 rs4970409 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 682.000000,4326.000000, 0.136182,0.863818, maf-5-some-pop 593 chr1 1053569 1053570 rs12087991 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,SC_SNP, 2 G,T, 4936.000000,72.000000, 0.985623,0.014377, 593 chr1 1053669 1053670 rs4970410 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1416.000000,3592.000000, 0.282748,0.717252, maf-5-some-pop,maf-5-all-pops 593 chr1 1053723 1053724 rs4970411 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3611.000000,1397.000000, 0.721046,0.278954, maf-5-some-pop,maf-5-all-pops 593 chr1 1053794 1053795 rs113130159 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 593 chr1 1053827 1053827 rs5772037 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,SSMP,TISHKOFF, 2 -,G, 4310.000000,698.000000, 0.860623,0.139377, 593 chr1 1053870 1053871 rs6683091 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 546.000000,4462.000000, 0.109026,0.890974, maf-5-some-pop,maf-5-all-pops 593 chr1 1054075 1054076 rs1105065 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3610.000000,1398.000000, 0.720847,0.279153, maf-5-some-pop,maf-5-all-pops 593 chr1 1054158 1054159 rs58753449 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB, 2 C,T, 4307.000000,701.000000, 0.860024,0.139976, maf-5-some-pop,maf-5-all-pops 593 chr1 1054211 1054212 rs59525363 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4461.000000,547.000000, 0.890775,0.109225, maf-5-some-pop,maf-5-all-pops 593 chr1 1054214 1054215 rs58087574 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4306.000000,702.000000, 0.859824,0.140176, maf-5-some-pop,maf-5-all-pops 593 chr1 1054551 1054552 rs12567697 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 681.000000,4327.000000, 0.135982,0.864018, maf-5-some-pop,maf-5-all-pops 593 chr1 1054670 1054676 rs377610717 0 + TATGTT TATGTT -/TATGTT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,TATGTT, 63.000000,4945.000000, 0.012580,0.987420, 593 chr1 1054740 1054741 rs78129219 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 593 chr1 1054742 1054743 rs57414802 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4308.000000,700.000000, 0.860224,0.139776, maf-5-some-pop,maf-5-all-pops 593 chr1 1054805 1054806 rs74586415 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 593 chr1 1054893 1054894 rs58537573 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB, 2 A,G, 553.000000,4455.000000, 0.110423,0.889577, maf-5-some-pop,maf-5-all-pops 593 chr1 1054988 1054990 rs149077107 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AG, 106.000000,4902.000000, 0.021166,0.978834, 593 chr1 1055015 1055016 rs75418966 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop,maf-5-all-pops 593 chr1 1055427 1055428 rs541096059 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 1261.000000,3747.000000, 0.251797,0.748203, 593 chr1 1055652 1055653 rs34808604 0 - C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 593 chr1 1055796 1055797 rs76744376 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop 593 chr1 1055876 1055877 rs374041777 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4937.000000,71.000000, 0.985823,0.014177, 593 chr1 1055900 1055901 rs74865318 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 698.000000,4310.000000, 0.139377,0.860623, maf-5-some-pop,maf-5-all-pops 593 chr1 1056005 1056006 rs72892233 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 547.000000,4461.000000, 0.109225,0.890775, maf-5-some-pop,maf-5-all-pops 593 chr1 1056150 1056151 rs113477232 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 553.000000,4455.000000, 0.110423,0.889577, 593 chr1 1056196 1056197 rs148130682 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, 593 chr1 1056200 1056201 rs141947323 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 553.000000,4455.000000, 0.110423,0.889577, 593 chr1 1056262 1056263 rs113777659 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 593 chr1 1056268 1056269 rs71628940 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4271.000000,737.000000, 0.852835,0.147165, 593 chr1 1056270 1056270 rs201129414 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4924.000000,84.000000, 0.983227,0.016773, 593 chr1 1056292 1056296 rs151161169 0 + AAAA AAAA -/AAAA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,AAAA, 101.000000,4907.000000, 0.020168,0.979832, 593 chr1 1056347 1056348 rs66868065 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop,maf-5-all-pops 593 chr1 1056575 1056576 rs76533537 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop,maf-5-all-pops 593 chr1 1056652 1056653 rs114540904 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 593 chr1 1056714 1056715 rs7538862 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3571.000000,1437.000000, 0.713059,0.286941, maf-5-some-pop,maf-5-all-pops 593 chr1 1056732 1056733 rs74048010 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,C, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 593 chr1 1056938 1056939 rs12726341 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,T, 698.000000,4310.000000, 0.139377,0.860623, maf-5-some-pop,maf-5-all-pops 593 chr1 1057398 1057398 rs200149901 0 + - - -/CT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,CT, 4936.000000,72.000000, 0.985623,0.014377, 593 chr1 1057421 1057422 rs74977732 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 735.000000,4273.000000, 0.146765,0.853235, maf-5-some-pop,maf-5-all-pops 593 chr1 1057507 1057508 rs75135491 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop,maf-5-all-pops 593 chr1 1057523 1057524 rs74535970 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop,maf-5-all-pops 593 chr1 1058513 1058514 rs79168258 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 593 chr1 1058767 1058768 rs113419523 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop,maf-5-all-pops 593 chr1 1058918 1058919 rs535350689 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, 593 chr1 1058924 1058925 rs555360438 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 224.000000,4784.000000, 0.044728,0.955272, 593 chr1 1058925 1058926 rs572070238 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 224.000000,4784.000000, 0.044728,0.955272, 593 chr1 1058948 1058949 rs534834785 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4747.000000,261.000000, 0.947883,0.052117, 593 chr1 1058951 1058952 rs557828959 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 261.000000,4747.000000, 0.052117,0.947883, 593 chr1 1058963 1058964 rs559319328 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, 593 chr1 1058968 1058969 rs111803029 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 4596.000000,412.000000, 0.917732,0.082268, 593 chr1 1058977 1058978 rs72892239 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 423.000000,4585.000000, 0.084465,0.915535, maf-5-some-pop,maf-5-all-pops 593 chr1 1059059 1059060 rs149229450 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 593 chr1 1059268 1059269 rs111163132 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4317.000000,691.000000, 0.862021,0.137979, maf-5-some-pop,maf-5-all-pops 593 chr1 1059269 1059270 rs11808877 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 444.000000,4564.000000, 0.088658,0.911342, maf-5-some-pop,maf-5-all-pops 593 chr1 1059404 1059405 rs112557070 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4317.000000,691.000000, 0.862021,0.137979, 593 chr1 1059448 1059449 rs548897206 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 593 chr1 1059607 1059608 rs113030431 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 593 chr1 1059672 1059673 rs111981156 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 593 chr1 1060042 1060043 rs11586617 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,C, 4331.000000,677.000000, 0.864816,0.135184, maf-5-some-pop,maf-5-all-pops 593 chr1 1060147 1060148 rs11587937 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4334.000000,674.000000, 0.865415,0.134585, maf-5-some-pop,maf-5-all-pops 593 chr1 1060163 1060164 rs75231039 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,G, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 593 chr1 1060174 1060175 rs7556082 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2496.000000,2512.000000, 0.498403,0.501597, maf-5-some-pop,maf-5-all-pops 593 chr1 1060234 1060235 rs7540009 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 303.000000,4705.000000, 0.060503,0.939497, maf-5-some-pop 593 chr1 1060354 1060355 rs12567855 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,G, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,maf-5-all-pops 593 chr1 1060507 1060507 rs148731474 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 4721.000000,287.000000, 0.942692,0.057308, 593 chr1 1060815 1060816 rs75112400 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 593 chr1 1061114 1061115 rs17160826 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 714.000000,4294.000000, 0.142572,0.857428, maf-5-some-pop,maf-5-all-pops 593 chr1 1061151 1061152 rs12748370 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop 593 chr1 1061201 1061202 rs115474087 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1061261 1061262 rs12757754 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop,maf-5-all-pops 593 chr1 1061507 1061508 rs12736814 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 676.000000,4332.000000, 0.134984,0.865016, maf-5-some-pop,maf-5-all-pops 593 chr1 1061512 1061513 rs6672026 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 593 chr1 1061673 1061674 rs116007048 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop,maf-5-all-pops 593 chr1 1062014 1062015 rs9659914 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF,WI_SSAHASNP, 2 C,T, 4687.000000,321.000000, 0.935903,0.064097, maf-5-some-pop 593 chr1 1062024 1062025 rs9329411 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3327.000000,1681.000000, 0.664337,0.335663, maf-5-some-pop,maf-5-all-pops 593 chr1 1062289 1062290 rs11260597 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP, 2 C,T, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop,maf-5-all-pops 593 chr1 1062308 1062309 rs111584056 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 100.000000,4908.000000, 0.019968,0.980032, 593 chr1 1062428 1062429 rs112363166 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 136.000000,4872.000000, 0.027157,0.972844, 593 chr1 1062464 1062464 rs139701761 0 + - - -/TACCTGAA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TACCTGAA, 4872.000000,136.000000, 0.972844,0.027157, 593 chr1 1062637 1062638 rs9442373 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2876.000000,2132.000000, 0.574281,0.425719, maf-5-some-pop,maf-5-all-pops 593 chr1 1063043 1063044 rs7545801 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 857.000000,4151.000000, 0.171126,0.828874, maf-5-some-pop,maf-5-all-pops 593 chr1 1063144 1063145 rs7532626 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF,WI_SSAHASNP, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, 593 chr1 1063240 1063241 rs4970413 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2626.000000,2382.000000, 0.524361,0.475639, maf-5-some-pop,maf-5-all-pops 593 chr1 1063278 1063279 rs58167719 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,HGSV, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 593 chr1 1063587 1063588 rs149175049 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 593 chr1 1064534 1064535 rs6682475 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3468.000000,1540.000000, 0.692492,0.307508, maf-5-some-pop,maf-5-all-pops 593 chr1 1064669 1064670 rs7547403 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 69.000000,4939.000000, 0.013778,0.986222, 593 chr1 1064801 1064802 rs2298216 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3963.000000,1045.000000, 0.791334,0.208666, maf-5-some-pop,maf-5-all-pops 593 chr1 1064978 1064979 rs2298217 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,YUSUKE, 2 C,T, 4183.000000,825.000000, 0.835264,0.164736, maf-5-some-pop 593 chr1 1065130 1065131 rs12066903 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,C, 312.000000,4696.000000, 0.062300,0.937700, maf-5-some-pop,maf-5-all-pops 593 chr1 1065229 1065230 rs78683216 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 593 chr1 1065295 1065296 rs4072537 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop,maf-5-all-pops 593 chr1 1065435 1065436 rs4072538 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BGI,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 305.000000,4703.000000, 0.060903,0.939097, 593 chr1 1065497 1065498 rs116408522 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 593 chr1 1065725 1065726 rs11260598 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 555.000000,4453.000000, 0.110823,0.889177, maf-5-some-pop,maf-5-all-pops 593 chr1 1065799 1065800 rs11580120 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4523.000000,485.000000, 0.903155,0.096845, maf-5-some-pop 593 chr1 1065814 1065815 rs72892262 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1065857 1065858 rs11260600 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,SC_SNP, 2 G,T, 4481.000000,527.000000, 0.894768,0.105232, 593 chr1 1066086 1066087 rs114751561 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 593 chr1 1066095 1066096 rs115331961 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 593 chr1 1066096 1066097 rs61766345 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 456.000000,4552.000000, 0.091054,0.908946, maf-5-some-pop,maf-5-all-pops 593 chr1 1066217 1066218 rs72892263 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 593 chr1 1066254 1066255 rs112290374 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop,maf-5-all-pops 593 chr1 1066256 1066257 rs191250253 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1066258 1066259 rs4072496 0 - G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 593 chr1 1066281 1066282 rs10907181 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1716.000000,3292.000000, 0.342652,0.657348, maf-5-some-pop,maf-5-all-pops 593 chr1 1066444 1066445 rs113858915 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 593 chr1 1066818 1066819 rs7513297 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,SSAHASNP,WI_SSAHASNP, 2 A,G, 2536.000000,2472.000000, 0.506390,0.493610, 593 chr1 1066827 1066828 rs7553878 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2535.000000,2473.000000, 0.506190,0.493810, 593 chr1 1066945 1066946 rs7513404 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2398.000000,2610.000000, 0.478834,0.521166, 593 chr1 1066952 1066953 rs7516160 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 2462.000000,2546.000000, 0.491613,0.508387, 593 chr1 1067142 1067143 rs7554175 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4550.000000,458.000000, 0.908546,0.091454, maf-5-some-pop,maf-5-all-pops 593 chr1 1067395 1067396 rs116599930 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 593 chr1 1067575 1067576 rs11589263 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 487.000000,4521.000000, 0.097244,0.902756, maf-5-some-pop,maf-5-all-pops 593 chr1 1067596 1067598 rs141257782 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 9 1000GENOMES,BL,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,AG, 2679.000000,2329.000000, 0.534944,0.465056, 593 chr1 1067864 1067865 rs9442358 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1016.000000,3992.000000, 0.202875,0.797125, maf-5-some-pop 593 chr1 1067877 1067878 rs140250292 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 593 chr1 1068189 1068190 rs144200800 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 593 chr1 1068279 1068280 rs74048016 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4864.000000,144.000000, 0.971246,0.028754, 593 chr1 1068457 1068458 rs79389248 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop 593 chr1 1068832 1068848 rs146603024 0 + GCCGCCTGCCTGCCCG GCCGCCTGCCTGCCCG -/GCCGCCTGCCTGCCCG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,LUNTER, 2 -,GCCGCCTGCCTGCCCG, 2472.000000,2536.000000, 0.493610,0.506390, 593 chr1 1068881 1068882 rs111649740 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 593 chr1 1068882 1068883 rs61766346 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 434.000000,4574.000000, 0.086661,0.913339, maf-5-some-pop,maf-5-all-pops 593 chr1 1069186 1069187 rs6699173 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 715.000000,4293.000000, 0.142772,0.857228, maf-5-some-pop 593 chr1 1069190 1069191 rs6665076 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 4286.000000,722.000000, 0.855831,0.144169, 593 chr1 1069280 1069281 rs9442359 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,SSMP, 2 A,G, 138.000000,4870.000000, 0.027556,0.972444, 593 chr1 1069345 1069346 rs113854344 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4447.000000,561.000000, 0.887979,0.112021, 593 chr1 1069419 1069420 rs112054464 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,G, 1181.000000,3827.000000, 0.235823,0.764177, 593 chr1 1069424 1069425 rs9442375 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2567.000000,2441.000000, 0.512580,0.487420, 593 chr1 1069442 1069443 rs9442376 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2610.000000,2398.000000, 0.521166,0.478834, 593 chr1 1069449 1069450 rs61766348 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 3653.000000,1355.000000, 0.729433,0.270567, 593 chr1 1069450 1069451 rs9442377 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2611.000000,2397.000000, 0.521366,0.478634, 593 chr1 1069475 1069482 rs201930395 0 + AAAAAAG AAAAAAG -/AAAAAAG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 -,AAAAAAG, 3177.000000,1831.000000, 0.634385,0.365615, 593 chr1 1069523 1069523 rs147491073 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF,WARNICH_LAB, 2 -,C, 4461.000000,547.000000, 0.890775,0.109225, 593 chr1 1069534 1069535 rs113355263 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop,maf-5-all-pops 593 chr1 1069601 1069602 rs74048017 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1343.000000,3665.000000, 0.268171,0.731829, maf-5-some-pop,maf-5-all-pops 593 chr1 1069652 1069653 rs71628941 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4095.000000,913.000000, 0.817692,0.182308, maf-5-some-pop,maf-5-all-pops 593 chr1 1069947 1069948 rs192913243 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1070091 1070092 rs111503055 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 593 chr1 1070127 1070128 rs9442378 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSMP, 2 G,T, 4623.000000,385.000000, 0.923123,0.076877, maf-5-some-pop 593 chr1 1070440 1070441 rs9442379 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 935.000000,4073.000000, 0.186701,0.813299, maf-5-some-pop,maf-5-all-pops 593 chr1 1070466 1070467 rs139475585 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, 593 chr1 1070721 1070722 rs74048019 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop,maf-5-all-pops 593 chr1 1070797 1070798 rs112122435 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 593 chr1 1071045 1071046 rs112551400 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 593 chr1 1071117 1071118 rs10907183 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2480.000000,2528.000000, 0.495208,0.504792, maf-5-some-pop,maf-5-all-pops 593 chr1 1071191 1071192 rs6604971 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop,maf-5-all-pops 593 chr1 1071353 1071354 rs113110627 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 593 chr1 1072180 1072181 rs141230226 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, 593 chr1 1072497 1072498 rs9442360 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SC_SNP,SSMP, 2 C,G, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 593 chr1 1072610 1072610 rs536286840 0 + - - -/G genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,G, 4942.000000,66.000000, 0.986821,0.013179, 593 chr1 1072685 1072686 rs182628732 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 288.000000,4720.000000, 0.057508,0.942492, 593 chr1 1073250 1073251 rs11581141 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop 593 chr1 1073766 1073767 rs7521551 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 331.000000,4677.000000, 0.066094,0.933906, 593 chr1 1074146 1074147 rs75421605 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 593 chr1 1074255 1074256 rs61766350 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1073.000000,3935.000000, 0.214257,0.785743, maf-5-some-pop,maf-5-all-pops 593 chr1 1074333 1074334 rs113923786 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, 593 chr1 1074362 1074363 rs72892273 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS, 2 C,T, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 593 chr1 1074430 1074431 rs369724700 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4942.000000,66.000000, 0.986821,0.013179, 593 chr1 1074765 1074766 rs74401890 0 + G G A/G genomic single by-frequency 0.32 0.24 intron exact 1 1 ENSEMBL, 2 A,G, 2.000000,8.000000, 0.200000,0.800000, 593 chr1 1075924 1075925 rs375290445 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 2678.000000,2330.000000, 0.534744,0.465256, 593 chr1 1076034 1076035 rs35853231 0 - G G C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSMP, 2 C,T, 4.000000,6.000000, 0.400000,0.600000, 593 chr1 1076237 1076238 rs28415320 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSAHASNP, 2 C,G, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop,maf-5-all-pops 593 chr1 1077063 1077064 rs4970357 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 4102.000000,906.000000, 0.819089,0.180911, maf-5-some-pop,maf-5-all-pops 593 chr1 1077853 1077854 rs146355575 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, 593 chr1 1077961 1077962 rs55750860 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2414.000000,2594.000000, 0.482029,0.517971, maf-5-some-pop,maf-5-all-pops 593 chr1 1078089 1078090 rs76974684 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 593 chr1 1078137 1078138 rs12022640 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,BGI,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop,maf-5-all-pops 593 chr1 1078582 1078583 rs12737205 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 7 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,SSAHASNP,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, 593 chr1 1079190 1079191 rs11260602 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1487.000000,3521.000000, 0.296925,0.703075, maf-5-some-pop,maf-5-all-pops 593 chr1 1079197 1079198 rs11260603 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1520.000000,3488.000000, 0.303514,0.696486, maf-5-some-pop,microattr-tpa 593 chr1 1079260 1079261 rs116661896 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 195.000000,4813.000000, 0.038938,0.961062, 593 chr1 1079865 1079866 rs11260604 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3519.000000,1489.000000, 0.702676,0.297324, maf-5-some-pop,maf-5-all-pops 593 chr1 1080165 1080166 rs115634148 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 593 chr1 1080393 1080394 rs138395681 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,WARNICH_LAB, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 593 chr1 1080919 1080920 rs77866920 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 5.000000,115.000000, 0.041667,0.958333, 593 chr1 1080926 1080927 rs4512588 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SC_JCM,SSMP, 2 C,T, 2248.000000,2760.000000, 0.448882,0.551118, maf-5-some-pop,maf-5-all-pops 593 chr1 1081051 1081052 rs74045108 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop,maf-5-all-pops 593 chr1 1081146 1081147 rs148678992 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 216.000000,4792.000000, 0.043131,0.956869, 593 chr1 1081347 1081348 rs112705162 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 593 chr1 1081403 1081403 rs142243912 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,C, 4801.000000,207.000000, 0.958666,0.041334, 593 chr1 1081433 1081434 rs79783619 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1081542 1081543 rs56949703 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 593 chr1 1081952 1081953 rs75680022 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop 593 chr1 1082231 1082232 rs115655322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 593 chr1 1082333 1082334 rs147851093 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4805.000000,203.000000, 0.959465,0.040535, 593 chr1 1082536 1082537 rs115958433 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 593 chr1 1082572 1082573 rs145224875 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4823.000000,185.000000, 0.963059,0.036941, 593 chr1 1082598 1082599 rs112561969 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB, 2 A,G, 151.000000,4857.000000, 0.030152,0.969848, 593 chr1 1082789 1082790 rs75299276 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,SSMP, 2 A,C, 679.000000,4329.000000, 0.135583,0.864417, 593 chr1 1082797 1082798 rs111341881 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 699.000000,4309.000000, 0.139577,0.860423, 593 chr1 1082828 1082829 rs143087458 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, 593 chr1 1082892 1082893 rs114870853 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4803.000000,205.000000, 0.959065,0.040934, 593 chr1 1083046 1083047 rs76134022 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4792.000000,216.000000, 0.956869,0.043131, maf-5-some-pop,maf-5-all-pops 593 chr1 1083055 1083056 rs80164470 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,maf-5-all-pops 593 chr1 1083158 1083159 rs11579425 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 977.000000,4031.000000, 0.195088,0.804912, maf-5-some-pop 593 chr1 1083355 1083356 rs114268825 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4805.000000,203.000000, 0.959465,0.040535, 593 chr1 1083692 1083693 rs115251198 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop,maf-5-all-pops 593 chr1 1083826 1083827 rs77446382 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop,maf-5-all-pops 593 chr1 1083949 1083950 rs115329223 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1083998 1083999 rs7520581 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 G,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop 593 chr1 1084178 1084179 rs115360468 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop,maf-5-all-pops 593 chr1 1084475 1084476 rs144029782 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 216.000000,4792.000000, 0.043131,0.956869, 593 chr1 1084614 1084615 rs116667486 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 G,T, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 593 chr1 1084717 1084718 rs76498420 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 593 chr1 1084793 1084794 rs116009746 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 593 chr1 1084802 1084803 rs79543316 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 593 chr1 1084981 1084982 rs78344829 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4795.000000,213.000000, 0.957468,0.042532, 593 chr1 1084989 1084990 rs367834221 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, 593 chr1 1085155 1085156 rs116077260 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops 593 chr1 1085343 1085344 rs116346038 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop,maf-5-all-pops 593 chr1 1085415 1085416 rs115652917 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop,maf-5-all-pops 593 chr1 1085545 1085546 rs139574397 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 205.000000,4803.000000, 0.040934,0.959065, 593 chr1 1085784 1085785 rs78734062 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop 593 chr1 1085992 1085993 rs149680587 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 224.000000,4784.000000, 0.044728,0.955272, 593 chr1 1086178 1086179 rs61766352 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 988.000000,4020.000000, 0.197284,0.802716, maf-5-some-pop,maf-5-all-pops 593 chr1 1086422 1086423 rs76054198 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 593 chr1 1086481 1086482 rs75418582 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 593 chr1 1086772 1086773 rs6690067 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 4352.000000,656.000000, 0.869010,0.130990, maf-5-some-pop,maf-5-all-pops 593 chr1 1086821 1086822 rs6685358 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 C,G, 4556.000000,452.000000, 0.909744,0.090256, 593 chr1 1086878 1086879 rs150468582 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 214.000000,4794.000000, 0.042732,0.957268, 593 chr1 1086936 1086937 rs115839549 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 214.000000,4794.000000, 0.042732,0.957268, 593 chr1 1087254 1087255 rs77113560 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops 593 chr1 1087427 1087428 rs76759405 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,maf-5-all-pops 593 chr1 1087451 1087452 rs114422951 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop,maf-5-all-pops 593 chr1 1087994 1087995 rs116537379 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4182.000000,826.000000, 0.835064,0.164936, maf-5-some-pop,maf-5-all-pops 593 chr1 1088008 1088009 rs116027526 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop,maf-5-all-pops 593 chr1 1088027 1088028 rs148703778 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 442.000000,4566.000000, 0.088259,0.911741, 593 chr1 1088088 1088089 rs142163180 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 813.000000,4195.000000, 0.162340,0.837660, 593 chr1 1088122 1088123 rs114421107 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,maf-5-all-pops 593 chr1 1088138 1088139 rs115198770 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 593 chr1 1088313 1088314 rs144052323 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1088391 1088392 rs12060862 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 646.000000,4362.000000, 0.128994,0.871006, 593 chr1 1088533 1088534 rs12060927 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,SC_SNP,SSMP,TISHKOFF, 2 C,T, 457.000000,4551.000000, 0.091254,0.908746, maf-5-some-pop 593 chr1 1088561 1088562 rs193156954 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4807.000000,201.000000, 0.959864,0.040136, 593 chr1 1088670 1088671 rs11583992 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 3532.000000,1476.000000, 0.705272,0.294728, 593 chr1 1088715 1088716 rs181158859 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4825.000000,183.000000, 0.963458,0.036541, 593 chr1 1088776 1088777 rs113722022 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop,maf-5-all-pops 593 chr1 1088787 1088788 rs114500466 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop,maf-5-all-pops 593 chr1 1088864 1088865 rs56085214 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, 593 chr1 1088907 1088908 rs57068258 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 465.000000,4543.000000, 0.092851,0.907149, 593 chr1 1089105 1089106 rs72631897 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 889.000000,4119.000000, 0.177516,0.822484, maf-5-some-pop,maf-5-all-pops 593 chr1 1089147 1089148 rs12061218 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 657.000000,4351.000000, 0.131190,0.868810, maf-5-some-pop,maf-5-all-pops 593 chr1 1089698 1089699 rs6686003 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,TISHKOFF, 2 A,G, 450.000000,4558.000000, 0.089856,0.910144, maf-5-some-pop 593 chr1 1089829 1089830 rs6700376 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,G, 4557.000000,451.000000, 0.909944,0.090056, maf-5-some-pop,maf-5-all-pops 593 chr1 1090009 1090010 rs9442361 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,C, 4128.000000,880.000000, 0.824281,0.175719, 593 chr1 1090022 1090023 rs139889540 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4751.000000,257.000000, 0.948682,0.051318, 593 chr1 1090316 1090317 rs142055848 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 202.000000,4806.000000, 0.040335,0.959665, 593 chr1 1090510 1090511 rs151152279 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, 593 chr1 1090556 1090557 rs7553429 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop 593 chr1 1091232 1091233 rs74557760 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 593 chr1 1091312 1091313 rs74045132 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4358.000000,650.000000, 0.870208,0.129792, maf-5-some-pop,maf-5-all-pops 593 chr1 1091464 1091465 rs74045133 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop,maf-5-all-pops 593 chr1 1091504 1091505 rs74045135 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4358.000000,650.000000, 0.870208,0.129792, maf-5-some-pop,maf-5-all-pops 593 chr1 1091575 1091576 rs74045136 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 A,C, 4559.000000,449.000000, 0.910344,0.089657, maf-5-some-pop,maf-5-all-pops 593 chr1 1091701 1091702 rs74045137 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4358.000000,650.000000, 0.870208,0.129792, maf-5-some-pop,maf-5-all-pops 593 chr1 1091715 1091716 rs74045138 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 A,G, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop,maf-5-all-pops 593 chr1 1091826 1091827 rs74045140 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4357.000000,651.000000, 0.870008,0.129992, 593 chr1 1091980 1091981 rs115407553 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 593 chr1 1092070 1092071 rs74045142 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 650.000000,4358.000000, 0.129792,0.870208, maf-5-some-pop,maf-5-all-pops 593 chr1 1092147 1092148 rs74045143 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 449.000000,4559.000000, 0.089657,0.910344, maf-5-some-pop,maf-5-all-pops 593 chr1 1092169 1092170 rs74045144 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB, 2 C,G, 449.000000,4559.000000, 0.089657,0.910344, maf-5-some-pop,maf-5-all-pops 593 chr1 1092204 1092205 rs77791262 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4807.000000,201.000000, 0.959864,0.040136, 593 chr1 1092282 1092283 rs114188160 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop,maf-5-all-pops 593 chr1 1092286 1092287 rs74045145 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,SSMP, 2 A,G, 4347.000000,661.000000, 0.868011,0.131989, maf-5-some-pop,maf-5-all-pops 593 chr1 1092343 1092344 rs115632178 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 G,T, 4806.000000,202.000000, 0.959665,0.040335, 593 chr1 1092366 1092367 rs113657720 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4145.000000,863.000000, 0.827676,0.172324, maf-5-some-pop,maf-5-all-pops 593 chr1 1092399 1092400 rs74045146 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,SSMP, 2 C,G, 661.000000,4347.000000, 0.131989,0.868011, maf-5-some-pop,maf-5-all-pops 593 chr1 1092423 1092424 rs78975118 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4345.000000,663.000000, 0.867612,0.132388, maf-5-some-pop 593 chr1 1092460 1092461 rs114528345 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, 593 chr1 1092469 1092470 rs116414484 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 G,T, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,maf-5-all-pops 593 chr1 1092481 1092482 rs115785548 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,maf-5-all-pops 593 chr1 1092562 1092563 rs57527288 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop 593 chr1 1092588 1092589 rs76537763 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 666.000000,4342.000000, 0.132987,0.867013, maf-5-some-pop,maf-5-all-pops 593 chr1 1092598 1092599 rs56863140 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 4163.000000,845.000000, 0.831270,0.168730, maf-5-some-pop 593 chr1 1092694 1092695 rs532389173 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 99.000000,4909.000000, 0.019768,0.980232, 593 chr1 1092951 1092952 rs75496439 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 593 chr1 1093232 1093232 rs146445080 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,SSMP,TISHKOFF, 2 -,G, 4806.000000,202.000000, 0.959665,0.040335, 593 chr1 1093468 1093469 rs142557015 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, 593 chr1 1093513 1093514 rs146011697 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, 593 chr1 1093783 1093784 rs115569263 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 593 chr1 1093835 1093836 rs116816284 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops 593 chr1 1093854 1093855 rs75873837 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 593 chr1 1093995 1093996 rs547942030 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 192.000000,4816.000000, 0.038339,0.961661, 593 chr1 1094024 1094025 rs116510521 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, 593 chr1 1094062 1094063 rs7551688 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1322.000000,3686.000000, 0.263978,0.736022, maf-5-some-pop 593 chr1 1094184 1094185 rs79251457 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 593 chr1 1094484 1094485 rs4970360 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2331.000000,2677.000000, 0.465455,0.534545, 593 chr1 1094588 1094589 rs142951196 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 191.000000,4817.000000, 0.038139,0.961861, 593 chr1 1094654 1094655 rs147744890 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, 593 chr1 1094671 1094672 rs4970361 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1995.000000,3013.000000, 0.398363,0.601637, 593 chr1 1094978 1094979 rs7538773 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2834.000000,2174.000000, 0.565895,0.434105, maf-5-some-pop,maf-5-all-pops 593 chr1 1095080 1095081 rs147938056 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4868.000000,140.000000, 0.972045,0.027955, 593 chr1 1095129 1095130 rs61768477 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop,maf-5-all-pops 593 chr1 1095287 1095288 rs115765831 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 4925.000000,83.000000, 0.983427,0.016573, 593 chr1 1095382 1095383 rs6604973 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3547.000000,1461.000000, 0.708267,0.291733, maf-5-some-pop,maf-5-all-pops 593 chr1 1095619 1095620 rs567921813 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1096010 1096011 rs9442381 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2331.000000,2677.000000, 0.465455,0.534545, maf-5-some-pop,maf-5-all-pops 593 chr1 1096197 1096198 rs9442382 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2261.000000,2747.000000, 0.451478,0.548522, maf-5-some-pop,maf-5-all-pops 593 chr1 1097286 1097287 rs9442384 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4099.000000,909.000000, 0.818490,0.181510, maf-5-some-pop 593 chr1 1097290 1097291 rs61768478 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 869.000000,4139.000000, 0.173522,0.826478, maf-5-some-pop,maf-5-all-pops 593 chr1 1097407 1097411 rs145121017 0 + CCCA CCCA -/CCCA genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,CCCA, 4073.000000,935.000000, 0.813299,0.186701, 593 chr1 1097723 1097724 rs75661872 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 593 chr1 1097992 1097993 rs116380534 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 593 chr1 1098265 1098266 rs147921662 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 593 chr1 1098357 1098358 rs61768479 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL, 2 C,G, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 593 chr1 1098420 1098421 rs12135382 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 2962.000000,2046.000000, 0.591454,0.408546, maf-5-some-pop,maf-5-all-pops 593 chr1 1098477 1098478 rs78282381 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1098713 1098714 rs4379629 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,G, 2868.000000,2140.000000, 0.572684,0.427316, maf-5-some-pop,maf-5-all-pops 593 chr1 1099276 1099277 rs115150672 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, 593 chr1 1099341 1099342 rs9660710 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 852.000000,4156.000000, 0.170128,0.829872, maf-5-some-pop 593 chr1 1099436 1099437 rs11584885 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 796.000000,4212.000000, 0.158946,0.841054, maf-5-some-pop,maf-5-all-pops 593 chr1 1099839 1099840 rs76051810 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 593 chr1 1100523 1100524 rs79776491 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop,maf-5-all-pops 593 chr1 1100856 1100857 rs76791193 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 593 chr1 1101002 1101003 rs7549819 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1014.000000,3994.000000, 0.202476,0.797524, maf-5-some-pop 593 chr1 1101301 1101302 rs80296038 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop,maf-5-all-pops 593 chr1 1101412 1101413 rs77342103 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop,maf-5-all-pops 593 chr1 1102295 1102296 rs113882248 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, 593 chr1 1102656 1102657 rs140316058 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, 593 chr1 1102792 1102793 rs115542311 0 + G G G/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 593 chr1 1103048 1103049 rs114497437 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 593 chr1 1103149 1103150 rs61768480 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 811.000000,4197.000000, 0.161941,0.838059, maf-5-some-pop,maf-5-all-pops 593 chr1 1103435 1103436 rs540338709 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1103536 1103537 rs112604916 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4797.000000,211.000000, 0.957867,0.042133, 593 chr1 1103541 1103542 rs7518873 0 + T T C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop 593 chr1 1104116 1104117 rs117987012 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 593 chr1 1104583 1104584 rs112695918 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 370.000000,4638.000000, 0.073882,0.926118, maf-5-some-pop 593 chr1 1104623 1104624 rs146776190 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 593 chr1 1104889 1104890 rs115780854 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 593 chr1 1105237 1105238 rs9442362 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1670.000000,3338.000000, 0.333466,0.666534, maf-5-some-pop,maf-5-all-pops 593 chr1 1105478 1105479 rs116691851 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 593 chr1 1105720 1105721 rs77277598 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4664.000000,344.000000, 0.931310,0.068690, maf-5-some-pop,maf-5-all-pops 593 chr1 1105781 1105782 rs79227320 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4755.000000,253.000000, 0.949481,0.050519, maf-5-some-pop,maf-5-all-pops 593 chr1 1106060 1106061 rs6656236 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 A,G, 2032.000000,2976.000000, 0.405751,0.594249, maf-5-some-pop,maf-5-all-pops 593 chr1 1106111 1106112 rs6670693 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,TISHKOFF, 2 A,G, 3781.000000,1227.000000, 0.754992,0.245008, 593 chr1 1106472 1106473 rs4970420 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2756.000000,2252.000000, 0.550319,0.449681, maf-5-some-pop,maf-5-all-pops 593 chr1 1106758 1106759 rs115111053 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 593 chr1 1106772 1106773 rs116787687 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 593 chr1 1106783 1106784 rs4442317 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1375.000000,3633.000000, 0.274561,0.725439, maf-5-some-pop,maf-5-all-pops 593 chr1 1106928 1106929 rs116660365 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 593 chr1 1107132 1107133 rs76363538 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 593 chr1 1107294 1107294 rs200555874 0 + - - -/C genomic insertion unknown 0 0 near-gene-5 between 1 3 1000GENOMES,SSMP,TISHKOFF, 2 -,C, 4897.000000,111.000000, 0.977835,0.022164, 593 chr1 1107304 1107305 rs118112965 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4897.000000,111.000000, 0.977835,0.022164, 593 chr1 1107306 1107307 rs117052210 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4897.000000,111.000000, 0.977835,0.022164, 593 chr1 1107358 1107359 rs115656418 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 593 chr1 1107841 1107842 rs11260535 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,G, 1343.000000,3665.000000, 0.268171,0.731829, maf-5-some-pop,maf-5-all-pops 593 chr1 1108013 1108014 rs142174211 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 593 chr1 1108156 1108172 rs201473200 0 + AATATATAAAATAATA AATATATAAAATAATA -/AATATATAAAATAATA genomic deletion unknown 0 0 near-gene-3,near-gene-5 range 1 1 1000GENOMES, 2 -,AATATATAAAATAATA, 97.000000,4911.000000, 0.019369,0.980631, 593 chr1 1108276 1108277 rs12136529 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1097.000000,3911.000000, 0.219050,0.780950, 593 chr1 1108338 1108339 rs141262787 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1108517 1108518 rs11260536 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop,maf-5-all-pops 593 chr1 1108636 1108637 rs4970421 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 13 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 901.000000,4107.000000, 0.179912,0.820088, maf-5-some-pop 593 chr1 1108756 1108757 rs111625258 0 + A A A/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4893.000000,115.000000, 0.977037,0.022963, 593 chr1 1108950 1108951 rs76610658 0 + G G G/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 G,T, 4954.000000,54.000000, 0.989217,0.010783, 593 chr1 1109103 1109104 rs74045197 0 + G G G/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4534.000000,474.000000, 0.905351,0.094649, maf-5-some-pop,maf-5-all-pops 593 chr1 1109153 1109154 rs12041521 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1215.000000,3793.000000, 0.242612,0.757388, maf-5-some-pop,maf-5-all-pops 593 chr1 1109192 1109193 rs41300088 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SI_EXO, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 593 chr1 1109194 1109195 rs5010608 0 + A A A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 8 1000GENOMES,ABI,BGI,EVA-GONL,ILLUMINA-UK,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop,maf-5-all-pops 593 chr1 1109251 1109252 rs5010607 0 + A A A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3001.000000,2007.000000, 0.599241,0.400759, maf-5-some-pop,maf-5-all-pops 593 chr1 1109310 1109311 rs5010606 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 11 1000GENOMES,ABI,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 685.000000,4323.000000, 0.136781,0.863219, maf-5-some-pop,maf-5-all-pops 593 chr1 1109314 1109315 rs5010605 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 7 1000GENOMES,ABI,EVA-GONL,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,G, 4323.000000,685.000000, 0.863219,0.136781, maf-5-some-pop,maf-5-all-pops 593 chr1 1109344 1109345 rs11587345 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL, 2 C,G, 60.000000,4948.000000, 0.011981,0.988019, 593 chr1 1109375 1109376 rs5010604 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 8 1000GENOMES,ABI,BGI,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 581.000000,4427.000000, 0.116014,0.883986, maf-5-some-pop,maf-5-all-pops 593 chr1 1109475 1109476 rs12141369 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1052.000000,3956.000000, 0.210064,0.789936, maf-5-some-pop,maf-5-all-pops 593 chr1 1109553 1109554 rs11260537 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop,maf-5-all-pops 593 chr1 1109652 1109653 rs11260538 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,untranslated-5 exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 700.000000,4308.000000, 0.139776,0.860224, maf-5-some-pop,maf-5-all-pops 593 chr1 1109764 1109765 rs72892302 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, 593 chr1 1109781 1109782 rs72894004 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 1057.000000,3951.000000, 0.211062,0.788938, maf-5-some-pop,maf-5-all-pops 593 chr1 1109902 1109903 rs11260539 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4446.000000,562.000000, 0.887780,0.112220, maf-5-some-pop,maf-5-all-pops 593 chr1 1109952 1109953 rs11260540 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 499.000000,4509.000000, 0.099641,0.900359, maf-5-some-pop,maf-5-all-pops 593 chr1 1109957 1109958 rs11260541 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4333.000000,675.000000, 0.865216,0.134784, maf-5-some-pop,maf-5-all-pops 593 chr1 1110018 1110019 rs11260542 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 16 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4284.000000,724.000000, 0.855431,0.144569, maf-5-some-pop 593 chr1 1110069 1110070 rs61768483 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 6 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 593 chr1 1110126 1110127 rs11260543 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 9 1000GENOMES,BGI,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4466.000000,542.000000, 0.891773,0.108227, maf-5-some-pop,maf-5-all-pops 593 chr1 1110166 1110167 rs115838697 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 593 chr1 1110224 1110225 rs11260544 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop,maf-5-all-pops 593 chr1 1110350 1110351 rs147831049 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, 593 chr1 1110367 1110368 rs11260545 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4390.000000,618.000000, 0.876597,0.123403, 593 chr1 1110419 1110420 rs12096422 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 619.000000,4389.000000, 0.123602,0.876398, 593 chr1 1110549 1110550 rs79683784 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 593 chr1 1110556 1110557 rs79295821 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, 593 chr1 1110585 1110586 rs9442387 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 16 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3767.000000,1241.000000, 0.752196,0.247804, maf-5-some-pop 593 chr1 1110754 1110755 rs77408828 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 593 chr1 1110987 1110987 rs138610889 0 + - - -/C genomic insertion unknown 0 0 intron,ncRNA between 1 5 1000GENOMES,EVA-GONL,LUNTER,SSIP,WARNICH_LAB, 2 -,C, 4302.000000,706.000000, 0.859026,0.140974, 593 chr1 1111146 1111147 rs112420268 0 + A A A/C genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 4952.000000,56.000000, 0.988818,0.011182, 593 chr1 1111244 1111245 rs61514045 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 C,T, 647.000000,4361.000000, 0.129193,0.870807, maf-5-some-pop,maf-5-all-pops 593 chr1 1111411 1111412 rs542237851 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 593 chr1 1111545 1111546 rs547843360 0 + G G C/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 C,G, 101.000000,4907.000000, 0.020168,0.979832, 593 chr1 1111575 1111576 rs113564442 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 593 chr1 1111624 1111625 rs113088320 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 593 chr1 1111632 1111633 rs375448418 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,SSMP, 2 A,G, 4425.000000,583.000000, 0.883586,0.116414, 593 chr1 1111649 1111650 rs112848878 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 593 chr1 1111742 1111743 rs111326580 0 + C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,G, 4865.000000,143.000000, 0.971446,0.028554, 593 chr1 1111869 1111870 rs75219155 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 593 chr1 1111888 1111906 rs563230438 0 + CACCTTTTCCCACCTCCA CACCTTTTCCCACCTCCA -/CACCTTTTCCCACCTCCA genomic deletion unknown 0 0 intron,cds-indel range 1 1 1000GENOMES, 2 -,CACCTTTTCCCACCTCCA, 80.000000,4928.000000, 0.015974,0.984026, 593 chr1 1111905 1111906 rs541202127 0 + A A A/T genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 A,T, 4944.000000,64.000000, 0.987220,0.012780, 593 chr1 1111961 1111962 rs76413434 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 593 chr1 1111986 1111987 rs77063733 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 593 chr1 1112227 1112228 rs72894007 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 593 chr1 1112259 1112260 rs79648303 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, 593 chr1 1112306 1112307 rs144945384 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 593 chr1 1112308 1112309 rs9724957 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 15 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2121.000000,2887.000000, 0.423522,0.576478, maf-5-some-pop,maf-5-all-pops 593 chr1 1112698 1112698 rs546851646 0 + - - -/T genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,T, 4483.000000,525.000000, 0.895168,0.104832, 593 chr1 1112809 1112810 rs28613513 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4471.000000,537.000000, 0.892772,0.107228, maf-5-some-pop,maf-5-all-pops 593 chr1 1112981 1112982 rs6671609 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3681.000000,1327.000000, 0.735024,0.264976, 593 chr1 1113120 1113121 rs12092254 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 608.000000,4400.000000, 0.121406,0.878594, maf-5-some-pop 593 chr1 1113393 1113394 rs12097428 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4468.000000,540.000000, 0.892173,0.107827, maf-5-some-pop,maf-5-all-pops 593 chr1 1113500 1113501 rs113136607 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, 593 chr1 1113570 1113571 rs12058450 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4229.000000,779.000000, 0.844449,0.155551, maf-5-some-pop,maf-5-all-pops 593 chr1 1114110 1114111 rs111388390 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 593 chr1 1114523 1114524 rs368507121 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 593 chr1 1114667 1114668 rs6668667 0 + G G A/G genomic single unknown 0 0 near-gene-5,missense exact 1 14 1000GENOMES,BCM_SSAHASNP,BGI,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 536.000000,4472.000000, 0.107029,0.892971, maf-5-some-pop 593 chr1 1114746 1114747 rs75179781 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,C, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 593 chr1 1115209 1115210 rs11260546 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1538.000000,3470.000000, 0.307109,0.692891, maf-5-some-pop,maf-5-all-pops 593 chr1 1115212 1115213 rs11260547 0 + G G G/T genomic single unknown 0 0 intron,untranslated-5 exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3568.000000,1440.000000, 0.712460,0.287540, maf-5-some-pop,maf-5-all-pops 593 chr1 1115221 1115222 rs79637846 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, 593 chr1 1115378 1115379 rs111649714 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 593 chr1 1115414 1115415 rs57556493 0 + C C C/T genomic single unknown 0 0 coding-synon,untranslated-5 exact 1 7 1000GENOMES,EXOME_CHIP,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop,maf-5-all-pops 593 chr1 1115460 1115461 rs116383664 0 + C C C/T genomic single unknown 0 0 missense exact 1 6 1000GENOMES,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 593 chr1 1115502 1115503 rs111751804 0 + T T C/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,ILLUMINA,NHLBI-ESP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 593 chr1 1115603 1115604 rs115023808 0 + C C A/C genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 A,C, 72.000000,4936.000000, 0.014377,0.985623, 593 chr1 1115738 1115739 rs60686192 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,NHLBI-ESP, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, 593 chr1 1115840 1115841 rs57269982 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,LUNTER,SSMP, 2 -,C, 148.000000,4860.000000, 0.029553,0.970447, 593 chr1 1115993 1115994 rs13376597 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,WUGSC_SSAHASNP, 2 A,G, 1354.000000,3654.000000, 0.270367,0.729633, maf-5-some-pop,maf-5-all-pops 593 chr1 1116004 1116005 rs112517367 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 593 chr1 1116230 1116231 rs13374146 0 + T T C/T genomic single unknown 0 0 missense exact 1 8 1000GENOMES,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,WUGSC_SSAHASNP, 2 C,T, 1005.000000,4003.000000, 0.200679,0.799321, maf-5-some-pop,maf-5-all-pops 593 chr1 1116310 1116311 rs12096125 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,SC_SNP,SSMP, 2 A,G, 1300.000000,3708.000000, 0.259585,0.740415, 593 chr1 1116552 1116553 rs72631898 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop,maf-5-all-pops 593 chr1 1116805 1116806 rs114012305 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 593 chr1 1117110 1117111 rs140479651 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 593 chr1 1117200 1117200 rs200289943 0 + - - -/CTCAG genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CTCAG, 4955.000000,53.000000, 0.989417,0.010583, 593 chr1 1117397 1117398 rs12097586 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1296.000000,3712.000000, 0.258786,0.741214, maf-5-some-pop 593 chr1 1117485 1117486 rs13376670 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 3531.000000,1477.000000, 0.705072,0.294928, maf-5-some-pop,maf-5-all-pops 593 chr1 1117521 1117522 rs113744836 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1117528 1117529 rs111949778 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL, 2 A,C, 4938.000000,70.000000, 0.986022,0.013978, 593 chr1 1117708 1117709 rs112895009 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,NHLBI-ESP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 593 chr1 1118211 1118212 rs10907171 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3206.000000,1802.000000, 0.640176,0.359824, maf-5-some-pop,maf-5-all-pops 593 chr1 1118274 1118275 rs61733845 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 12 1000GENOMES,BUSHMAN,CLINSEQ_SNP,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 4078.000000,930.000000, 0.814297,0.185703, maf-5-some-pop 593 chr1 1118490 1118491 rs112838421 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 593 chr1 1118559 1118560 rs113531911 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 593 chr1 1118577 1118578 rs111290899 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop 593 chr1 1118727 1118728 rs12097131 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4445.000000,563.000000, 0.887580,0.112420, maf-5-some-pop 593 chr1 1118897 1118898 rs77560046 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, 593 chr1 1119233 1119234 rs568611774 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 132.000000,4876.000000, 0.026358,0.973642, 593 chr1 1119545 1119546 rs77051049 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 G,T, 4943.000000,65.000000, 0.987021,0.012979, 593 chr1 1119795 1119796 rs74989427 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 593 chr1 1119802 1119803 rs78752770 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 593 chr1 1119857 1119858 rs1320565 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3412.000000,1596.000000, 0.681310,0.318690, maf-5-some-pop,maf-5-all-pops 593 chr1 1120306 1120307 rs7539911 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,SSMP,WI_SSAHASNP, 2 A,G, 1584.000000,3424.000000, 0.316294,0.683706, 593 chr1 1120369 1120370 rs74046640 0 + C C C/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop 593 chr1 1120430 1120431 rs1320571 0 + G G A/G genomic single unknown 0 0 missense exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 928.000000,4080.000000, 0.185304,0.814696, maf-5-some-pop 593 chr1 1120487 1120488 rs74475385 0 + A A A/C genomic single unknown 0 0 missense exact 1 6 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,C, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop 593 chr1 1120494 1120495 rs77026477 0 + T T C/T genomic single unknown 0 0 coding-synon,intron exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop 593 chr1 1120502 1120503 rs116251234 0 + G G A/G genomic single unknown 0 0 intron,missense exact 1 4 1000GENOMES,EXOME_CHIP,NHLBI-ESP,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 593 chr1 1120535 1120536 rs77950429 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 11 1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 593 chr1 1120620 1120621 rs74758268 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 84.000000,4924.000000, 0.016773,0.983227, 593 chr1 1121340 1121341 rs4297230 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3665.000000,1343.000000, 0.731829,0.268171, maf-5-some-pop 593 chr1 1121357 1121358 rs80057011 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop,maf-5-all-pops 593 chr1 1121423 1121424 rs72894017 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 593 chr1 1121479 1121480 rs12063663 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,HGSV,SC_SNP, 2 C,T, 656.000000,4352.000000, 0.130990,0.869010, 593 chr1 1121556 1121557 rs112904239 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 593 chr1 1121624 1121625 rs4081334 0 - C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 593 chr1 1121656 1121657 rs11260548 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1988.000000,3020.000000, 0.396965,0.603035, 593 chr1 1121708 1121709 rs111966405 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 593 chr1 1121787 1121788 rs115652369 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 593 chr1 1121793 1121794 rs11260549 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop 593 chr1 1121835 1121835 rs57346441 0 + - - -/TG genomic insertion unknown 0 0 intron between 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,HGSV,LUNTER,TISHKOFF, 2 -,TG, 2998.000000,2010.000000, 0.598642,0.401358, 593 chr1 1121865 1121866 rs113802310 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1122023 1122024 rs4314833 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1272.000000,3736.000000, 0.253994,0.746006, maf-5-some-pop 593 chr1 1122195 1122196 rs4634847 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3687.000000,1321.000000, 0.736222,0.263778, maf-5-some-pop 593 chr1 1122282 1122283 rs12064046 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop,maf-5-all-pops 593 chr1 1122318 1122319 rs7415847 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3737.000000,1271.000000, 0.746206,0.253794, 593 chr1 1122387 1122388 rs11260550 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SC_SNP,TISHKOFF, 2 A,G, 1316.000000,3692.000000, 0.262780,0.737220, 593 chr1 1122393 1122393 rs533697430 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,SSIP, 2 -,T, 3699.000000,1309.000000, 0.738618,0.261382, 593 chr1 1122395 1122396 rs61768484 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 C,T, 3691.000000,1317.000000, 0.737021,0.262979, 593 chr1 1122467 1122468 rs7545694 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1939.000000,3069.000000, 0.387181,0.612819, 593 chr1 1122515 1122516 rs11260551 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1271.000000,3737.000000, 0.253794,0.746206, maf-5-some-pop,maf-5-all-pops 593 chr1 1122538 1122539 rs12063897 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, maf-5-some-pop,maf-5-all-pops 593 chr1 1122915 1122916 rs28460227 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4490.000000,518.000000, 0.896565,0.103435, 593 chr1 1122936 1122937 rs28648687 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop,maf-5-all-pops 593 chr1 1123105 1123106 rs12401472 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1282.000000,3726.000000, 0.255990,0.744010, 593 chr1 1123433 1123434 rs12066716 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1199.000000,3809.000000, 0.239417,0.760583, maf-5-some-pop,maf-5-all-pops 593 chr1 1124004 1124005 rs145538412 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 593 chr1 1124099 1124100 rs147725041 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 593 chr1 1124256 1124257 rs10907172 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3726.000000,1282.000000, 0.744010,0.255990, maf-5-some-pop 593 chr1 1124342 1124343 rs7544660 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4321.000000,687.000000, 0.862819,0.137181, maf-5-some-pop 593 chr1 1124398 1124399 rs10907173 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3681.000000,1327.000000, 0.735024,0.264976, maf-5-some-pop 593 chr1 1124537 1124538 rs11577350 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 593 chr1 1124662 1124663 rs6684820 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2774.000000,2234.000000, 0.553914,0.446086, maf-5-some-pop,maf-5-all-pops 593 chr1 1124749 1124750 rs6702156 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 593 chr1 1124791 1124792 rs143677262 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4904.000000,104.000000, 0.979233,0.020767, 593 chr1 1124818 1124819 rs6694487 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4473.000000,535.000000, 0.893171,0.106829, maf-5-some-pop,maf-5-all-pops 593 chr1 1124890 1124891 rs61768485 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1282.000000,3726.000000, 0.255990,0.744010, maf-5-some-pop 593 chr1 1124973 1124974 rs78717314 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop 593 chr1 1125109 1125110 rs12124436 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 1255.000000,3753.000000, 0.250599,0.749401, maf-5-some-pop,maf-5-all-pops 593 chr1 1125125 1125126 rs78281127 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 133.000000,4875.000000, 0.026557,0.973442, 593 chr1 1125219 1125220 rs12065129 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4473.000000,535.000000, 0.893171,0.106829, maf-5-some-pop,maf-5-all-pops 593 chr1 1125220 1125221 rs138045565 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 593 chr1 1125347 1125348 rs12029885 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1327.000000,3681.000000, 0.264976,0.735024, 593 chr1 1125440 1125441 rs189973229 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 593 chr1 1125552 1125553 rs10907174 0 + A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3170.000000,1838.000000, 0.632987,0.367013, maf-5-some-pop,maf-5-all-pops 593 chr1 1125627 1125627 rs574618634 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4159.000000,849.000000, 0.830471,0.169529, 593 chr1 1125773 1125774 rs72894023 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4321.000000,687.000000, 0.862819,0.137181, maf-5-some-pop 593 chr1 1125811 1125811 rs541647229 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 3745.000000,1263.000000, 0.747804,0.252196, 593 chr1 1126086 1126087 rs9727406 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4321.000000,687.000000, 0.862819,0.137181, maf-5-some-pop 593 chr1 1126235 1126236 rs4578157 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1329.000000,3679.000000, 0.265375,0.734625, 593 chr1 1126254 1126255 rs4449971 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1283.000000,3725.000000, 0.256190,0.743810, 593 chr1 1126805 1126806 rs112531984 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,T, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1126948 1126949 rs12120877 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP, 2 G,T, 59.000000,4949.000000, 0.011781,0.988219, 593 chr1 1127009 1127010 rs9730380 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 649.000000,4359.000000, 0.129593,0.870407, maf-5-some-pop,maf-5-all-pops 593 chr1 1127100 1127101 rs9659458 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop,maf-5-all-pops 593 chr1 1127136 1127137 rs12062271 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4415.000000,593.000000, 0.881589,0.118411, maf-5-some-pop,maf-5-all-pops 593 chr1 1127321 1127322 rs11260552 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1285.000000,3723.000000, 0.256589,0.743411, 593 chr1 1127329 1127330 rs12061357 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4477.000000,531.000000, 0.893970,0.106030, 593 chr1 1127379 1127380 rs11260553 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop,maf-5-all-pops 593 chr1 1127506 1127507 rs12021582 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1284.000000,3724.000000, 0.256390,0.743610, maf-5-some-pop 593 chr1 1127522 1127523 rs12024296 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3724.000000,1284.000000, 0.743610,0.256390, maf-5-some-pop 593 chr1 1127608 1127608 rs138180324 0 + - - -/T genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 4475.000000,533.000000, 0.893570,0.106430, 593 chr1 1127680 1127681 rs61768486 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1284.000000,3724.000000, 0.256390,0.743610, maf-5-some-pop,maf-5-all-pops 593 chr1 1127859 1127860 rs148527527 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 4120.000000,888.000000, 0.822684,0.177316, 593 chr1 1127947 1127948 rs61768488 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,C, 3699.000000,1309.000000, 0.738618,0.261382, 593 chr1 1127976 1127977 rs61768491 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,SSMP,TISHKOFF, 2 A,G, 3142.000000,1866.000000, 0.627396,0.372604, 593 chr1 1128330 1128331 rs61766176 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3725.000000,1283.000000, 0.743810,0.256190, maf-5-some-pop 593 chr1 1128404 1128409 rs201316879 0 + TAATA TAATA -/TAATA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TAATA, 70.000000,4938.000000, 0.013978,0.986022, 593 chr1 1128428 1128429 rs61766177 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop,maf-5-all-pops 593 chr1 1128520 1128521 rs61766178 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3132.000000,1876.000000, 0.625399,0.374601, 593 chr1 1129004 1129005 rs112761379 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 G,T, 4946.000000,62.000000, 0.987620,0.012380, 593 chr1 1129031 1129032 rs28657564 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4127.000000,881.000000, 0.824081,0.175919, 593 chr1 1129121 1129122 rs9659213 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 532.000000,4476.000000, 0.106230,0.893770, 593 chr1 1129362 1129362 rs60117456 0 + - - -/C genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 4246.000000,762.000000, 0.847843,0.152157, 593 chr1 1129671 1129672 rs11260554 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3734.000000,1274.000000, 0.745607,0.254393, maf-5-some-pop 593 chr1 1129706 1129707 rs11260555 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3722.000000,1286.000000, 0.743211,0.256789, maf-5-some-pop,maf-5-all-pops 593 chr1 1129788 1129789 rs12060374 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,maf-5-all-pops 593 chr1 1129919 1129920 rs12060422 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,maf-5-all-pops 593 chr1 1130092 1130093 rs12026524 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3721.000000,1287.000000, 0.743011,0.256989, maf-5-some-pop,maf-5-all-pops 593 chr1 1130113 1130114 rs80172355 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 593 chr1 1130199 1130200 rs60952966 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 688.000000,4320.000000, 0.137380,0.862620, maf-5-some-pop 593 chr1 1130205 1130206 rs11260556 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1872.000000,3136.000000, 0.373802,0.626198, maf-5-some-pop,maf-5-all-pops 593 chr1 1130310 1130311 rs59574701 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 694.000000,4314.000000, 0.138578,0.861422, maf-5-some-pop,maf-5-all-pops 593 chr1 1130361 1130365 rs370017189 0 + CTCT CTCT -/CTCT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CTCT, 62.000000,4946.000000, 0.012380,0.987620, 593 chr1 1130479 1130480 rs9659772 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1374.000000,3634.000000, 0.274361,0.725639, maf-5-some-pop,maf-5-all-pops 593 chr1 1130589 1130590 rs111659490 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1130659 1130660 rs9727211 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4212.000000,796.000000, 0.841054,0.158946, maf-5-some-pop 593 chr1 1130842 1130843 rs9727857 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2254.000000,2754.000000, 0.450080,0.549920, maf-5-some-pop,maf-5-all-pops 593 chr1 1130854 1130855 rs10907176 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 523.000000,4485.000000, 0.104433,0.895567, maf-5-some-pop,maf-5-all-pops 593 chr1 1131051 1131052 rs12066103 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4484.000000,524.000000, 0.895367,0.104633, maf-5-some-pop,maf-5-all-pops 593 chr1 1131146 1131147 rs113488592 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 593 chr1 1131235 1131236 rs12062042 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4493.000000,515.000000, 0.897165,0.102835, maf-5-some-pop,maf-5-all-pops 593 chr1 1131311 1131312 rs12067297 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 C,T, 310.000000,48.000000, 0.865922,0.134078, maf-5-some-pop,maf-5-all-pops 593 chr1 1131418 1131419 rs9660873 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3137.000000,1871.000000, 0.626398,0.373602, 593 chr1 1131440 1131441 rs12403745 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3757.000000,1251.000000, 0.750200,0.249800, maf-5-some-pop,maf-5-all-pops 593 chr1 1131502 1131503 rs111614847 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 593 chr1 1131580 1131581 rs9329409 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2650.000000,2358.000000, 0.529153,0.470847, maf-5-some-pop,maf-5-all-pops 593 chr1 1133253 1133254 rs12026794 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 1279.000000,3729.000000, 0.255391,0.744609, maf-5-some-pop,maf-5-all-pops 593 chr1 1133272 1133273 rs12031928 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,PJP,SC_SNP,SSMP, 2 C,T, 2650.000000,2358.000000, 0.529153,0.470847, maf-5-some-pop,maf-5-all-pops 593 chr1 1133311 1133317 rs142233803 0 + ACAAAC ACAAAC -/ACAAAC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,ACAAAC, 168.000000,4840.000000, 0.033546,0.966454, 593 chr1 1133315 1133317 rs142789284 0 + AC AC -/AC genomic deletion unknown 0 0 near-gene-3 range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,AC, 504.000000,4504.000000, 0.100639,0.899361, 593 chr1 1133501 1133502 rs113723849 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4335.000000,673.000000, 0.865615,0.134385, maf-5-some-pop 593 chr1 1133571 1133572 rs146994145 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 593 chr1 1133656 1133657 rs115710668 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 593 chr1 1133786 1133787 rs12405246 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2650.000000,2358.000000, 0.529153,0.470847, maf-5-some-pop,maf-5-all-pops 593 chr1 1133929 1133930 rs58004717 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4336.000000,672.000000, 0.865815,0.134185, maf-5-some-pop 593 chr1 1134052 1134053 rs60075996 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop 593 chr1 1134252 1134253 rs200115846 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 87.000000,4921.000000, 0.017372,0.982628, 593 chr1 1134632 1134633 rs11260558 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3535.000000,1473.000000, 0.705871,0.294129, maf-5-some-pop,maf-5-all-pops 593 chr1 1134706 1134707 rs9727747 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1314.000000,3694.000000, 0.262380,0.737620, maf-5-some-pop 593 chr1 1135056 1135057 rs76788904 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4831.000000,177.000000, 0.964656,0.035344, 593 chr1 1135107 1135108 rs58737594 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 4352.000000,656.000000, 0.869010,0.130990, maf-5-some-pop,maf-5-all-pops 593 chr1 1135241 1135242 rs9729550 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SNP500CANCER,SSMP,TISHKOFF, 2 A,C, 2244.000000,2764.000000, 0.448083,0.551917, maf-5-some-pop,maf-5-all-pops 593 chr1 1135298 1135299 rs115135680 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 86.000000,4922.000000, 0.017173,0.982827, 593 chr1 1135650 1135651 rs72894031 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop,maf-5-all-pops 593 chr1 1135825 1135826 rs372949868 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,T, 4940.000000,68.000000, 0.986422,0.013578, 593 chr1 1136274 1136275 rs112347635 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,LUNTER,SSMP,TISHKOFF, 2 -,T, 285.000000,4723.000000, 0.056909,0.943091, 593 chr1 1136667 1136668 rs182292802 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 261.000000,4747.000000, 0.052117,0.947883, 593 chr1 1136752 1136753 rs186608774 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 1471.000000,3537.000000, 0.293730,0.706270, 593 chr1 1137190 1137191 rs192669137 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 453.000000,4555.000000, 0.090455,0.909545, 593 chr1 1137192 1137193 rs548928504 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4606.000000,402.000000, 0.919728,0.080272, 593 chr1 1137705 1137706 rs376031205 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 3788.000000,1220.000000, 0.756390,0.243610, 593 chr1 1138004 1138005 rs536805412 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 248.000000,4760.000000, 0.049521,0.950479, 593 chr1 1138042 1138043 rs536274149 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 384.000000,4624.000000, 0.076677,0.923323, 593 chr1 1138284 1138285 rs74508499 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop,maf-5-all-pops 593 chr1 1138734 1138735 rs11466698 0 - C C C/G genomic single unknown 0 0 near-gene-3 exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,IIPGA-WEISS-MARTINEZ,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 593 chr1 1138843 1138844 rs11466697 0 - G G C/T genomic single unknown 0.021503 0.101435 near-gene-3 exact 1 1 IIPGA-WEISS-MARTINEZ, 2 C,T, 91.000000,1.000000, 0.989130,0.010870, 593 chr1 1140152 1140153 rs76030777 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 593 chr1 1140289 1140290 rs57260149 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 611.000000,4397.000000, 0.122005,0.877995, maf-5-some-pop 593 chr1 1140434 1140435 rs1815606 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,IIPGA-WEISS-MARTINEZ,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1442.000000,3566.000000, 0.287939,0.712061, maf-5-some-pop 593 chr1 1140503 1140504 rs4081335 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,IIPGA-WEISS-MARTINEZ,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 531.000000,4477.000000, 0.106030,0.893970, maf-5-some-pop 593 chr1 1140798 1140799 rs11466689 0 - C C A/G genomic single by-frequency 0.065857 0.16909 coding-synon exact 1 1 IIPGA-WEISS-MARTINEZ, 2 A,G, 3.000000,85.000000, 0.034091,0.965909, 593 chr1 1140869 1140870 rs11466687 0 - C C A/G genomic single unknown 0 0 missense exact 1 4 EVA-GONL,IIPGA-WEISS-MARTINEZ,ILLUMINA,KRIBB_YJKIM, 2 A,G, 13.000000,1141.000000, 0.011265,0.988735, 593 chr1 1140903 1140904 rs11466686 0 - C C C/G genomic single by-frequency 0.086777 0.189363 intron exact 1 1 IIPGA-WEISS-MARTINEZ, 2 C,G, 4.000000,84.000000, 0.045454,0.954545, 593 chr1 1140908 1140909 rs11466685 0 - C C C/G genomic single by-frequency 0.086777 0.189363 intron exact 1 1 IIPGA-WEISS-MARTINEZ, 2 C,G, 4.000000,84.000000, 0.045454,0.954545, 593 chr1 1140938 1140939 rs11466684 0 - C C A/G genomic single unknown 0.022469 0.103584 intron exact 1 1 IIPGA-WEISS-MARTINEZ, 2 A,G, 1.000000,87.000000, 0.011364,0.988636, 593 chr1 1141823 1141824 rs11466676 0 - G G C/G genomic single unknown 0 0 missense exact 1 7 1000GENOMES,BUSHMAN,CORNELL,EXOME_CHIP,IIPGA-WEISS-MARTINEZ,NHLBI-ESP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 593 chr1 1142094 1142095 rs11466675 0 - G G C/T genomic single unknown 0.02105 0.100409 near-gene-5,untranslated-5 exact 1 1 IIPGA-WEISS-MARTINEZ, 2 C,T, 93.000000,1.000000, 0.989362,0.010638, 593 chr1 1142149 1142150 rs3753344 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,HGSV,IIPGA-WEISS-MARTINEZ,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 541.000000,4467.000000, 0.108027,0.891973, maf-5-some-pop 593 chr1 1142253 1142254 rs11466674 0 - C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,IIPGA-WEISS-MARTINEZ,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 593 chr1 1142403 1142403 rs397843839 0 - - - -/G genomic insertion by-frequency 0 0 near-gene-5 between 1 1 IIPGA-WEISS-MARTINEZ, 2 -,G, 86.000000,6.000000, 0.934783,0.065217, maf-5-some-pop 593 chr1 1142691 1142694 rs139831526 0 + GAG GAG -/GAG genomic deletion unknown 0 0 near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,GAG, 64.000000,4944.000000, 0.012780,0.987220, 593 chr1 1143103 1143104 rs3753346 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,IIPGA-WEISS-MARTINEZ,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4587.000000,421.000000, 0.915935,0.084065, maf-5-some-pop 593 chr1 1143179 1143180 rs3834015 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BGI,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 482.000000,4526.000000, 0.096246,0.903754, 593 chr1 1143183 1143184 rs397825100 0 + G G -/G genomic deletion by-cluster,by-frequency 0 0 near-gene-5 exact 1 2 IIPGA-WEISS-MARTINEZ,YUSUKE, 2 -,G, 4.000000,86.000000, 0.044444,0.955556, maf-5-some-pop 593 chr1 1143225 1143226 rs11466666 0 - G G C/T genomic single unknown 0.023526 0.105875 near-gene-5 exact 1 1 IIPGA-WEISS-MARTINEZ, 2 C,T, 83.000000,1.000000, 0.988095,0.011905, 593 chr1 1143296 1143297 rs180932521 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 593 chr1 1143450 1143451 rs3753347 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,IIPGA-WEISS-MARTINEZ,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4270.000000,738.000000, 0.852636,0.147364, maf-5-some-pop,maf-5-all-pops 593 chr1 1143656 1143657 rs3753348 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,IIPGA-WEISS-MARTINEZ,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4575.000000,433.000000, 0.913538,0.086462, maf-5-some-pop 593 chr1 1143921 1143922 rs111812582 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 593 chr1 1144054 1144055 rs138198189 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 593 chr1 1144057 1144058 rs3753349 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop 593 chr1 1144121 1144122 rs57356573 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 186.000000,4822.000000, 0.037141,0.962859, 593 chr1 1144195 1144196 rs3753350 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 412.000000,4596.000000, 0.082268,0.917732, maf-5-some-pop,maf-5-all-pops 593 chr1 1144499 1144501 rs113462398 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP, 2 -,GA, 375.000000,4633.000000, 0.074880,0.925120, 593 chr1 1144615 1144616 rs80042932 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 233.000000,4775.000000, 0.046526,0.953474, 593 chr1 1144652 1144653 rs78021605 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop,maf-5-all-pops 593 chr1 1144695 1144696 rs111842318 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 C,T, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop,maf-5-all-pops 593 chr1 1144831 1144832 rs111559683 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop,maf-5-all-pops 593 chr1 1145067 1145068 rs35615256 0 - C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EGP_SNPS,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 593 chr1 1145466 1145467 rs34279802 0 - C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 593 chr1 1145481 1145483 rs367679479 0 + AA AA -/AA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSIP,SSMP, 2 -,AA, 418.000000,4590.000000, 0.083467,0.916534, 593 chr1 1145765 1145766 rs34067070 0 - C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 593 chr1 1146398 1146399 rs2298208 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,EGP_SNPS,GMI,ILLUMINA,SSMP,YUSUKE, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 593 chr1 1146784 1146785 rs2298209 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,BGI,EGP_SNPS,EVA-GONL,ILLUMINA,SSMP,YUSUKE, 2 C,G, 184.000000,4824.000000, 0.036741,0.963259, maf-5-some-pop 593 chr1 1146852 1146853 rs2298210 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,EGP_SNPS,EVA-GONL,SSMP,TISHKOFF,YUSUKE, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 593 chr1 1147242 1147243 rs2298211 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,YUSUKE, 2 A,C, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 593 chr1 1147296 1147297 rs2298212 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 426.000000,4582.000000, 0.085064,0.914936, maf-5-some-pop 593 chr1 1147769 1147770 rs9661697 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EGP_SNPS,EVA-GONL,ILLUMINA,SSMP,WI_SSAHASNP, 2 A,G, 383.000000,4625.000000, 0.076478,0.923522, maf-5-some-pop 593 chr1 1149315 1149316 rs35737009 0 - C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,EGP_SNPS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 593 chr1 1149745 1149746 rs369542957 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 593 chr1 1150180 1150181 rs35659545 0 - G G C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 593 chr1 1150437 1150438 rs35791369 0 - A A A/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EGP_SNPS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 593 chr1 1151541 1151542 rs78113662 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 593 chr1 1151557 1151558 rs150063369 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,WARNICH_LAB, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 593 chr1 1151678 1151679 rs77271083 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop 593 chr1 1151916 1151917 rs78479912 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, 593 chr1 1151972 1151973 rs75972122 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 7 1000GENOMES,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 982.000000,4026.000000, 0.196086,0.803914, maf-5-some-pop,maf-5-all-pops 593 chr1 1152079 1152080 rs76798288 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 237.000000,4771.000000, 0.047324,0.952676, maf-5-some-pop 593 chr1 1152087 1152089 rs201944277 0 + CT CT -/CT genomic deletion unknown 0 0 near-gene-3 range 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 -,CT, 209.000000,4799.000000, 0.041733,0.958267, 593 chr1 1152271 1152272 rs557465512 0 + T T -/T genomic deletion unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 -,T, 77.000000,4931.000000, 0.015375,0.984625, 593 chr1 1152547 1152548 rs11260561 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,SC_SNP, 2 A,G, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop,maf-5-all-pops 593 chr1 1152630 1152631 rs11721 0 - C C A/C/G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 SingleClassQuadAllelic 14 1000GENOMES,BGI,BUSHMAN,CGAP-GAI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,SEQUENOM,SSMP,TISHKOFF, 4 A,C,G,T, 794.000000,4214.000000,4214.000000,794.000000, 0.079273,0.420727,0.420727,0.079273, maf-5-some-pop 593 chr1 1152730 1152731 rs76053780 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 A,G, 201.000000,4807.000000, 0.040136,0.959864, 593 chr1 1152763 1152769 rs71768002 0 + GCCGCG GCCGCG -/GCCGCG genomic deletion unknown 0 0 cds-indel,untranslated-3 range 1 2 1000GENOMES,LUNTER, 2 -,GCCGCG, 201.000000,4807.000000, 0.040136,0.959864, 593 chr1 1152842 1152843 rs576781719 0 + A A A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, 593 chr1 1153112 1153113 rs12036216 0 + G G A/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 12 1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP, 2 A,G, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop 593 chr1 1153454 1153455 rs77156226 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop 593 chr1 1154120 1154121 rs112680577 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,BUSHMAN,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 593 chr1 1154538 1154539 rs9659553 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 381.000000,4627.000000, 0.076078,0.923922, maf-5-some-pop,maf-5-all-pops 593 chr1 1154583 1154583 rs573538759 0 + - - -/C genomic insertion unknown 0 0 intron,untranslated-3 between 1 1 1000GENOMES, 2 -,C, 4569.000000,439.000000, 0.912340,0.087660, 593 chr1 1154956 1154957 rs111614711 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB, 2 A,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop,maf-5-all-pops 593 chr1 1155014 1155015 rs116630076 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 593 chr1 1155081 1155082 rs111514896 0 + C C C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4529.000000,479.000000, 0.904353,0.095647, maf-5-some-pop,maf-5-all-pops 593 chr1 1155237 1155238 rs12134035 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1327.000000,3681.000000, 0.264976,0.735024, maf-5-some-pop,maf-5-all-pops 593 chr1 1155260 1155261 rs79577694 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 593 chr1 1155616 1155617 rs79598135 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,SSMP, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 593 chr1 1155684 1155685 rs57159546 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 285.000000,4723.000000, 0.056909,0.943091, maf-5-some-pop,maf-5-all-pops 593 chr1 1155756 1155757 rs4970422 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3662.000000,1346.000000, 0.731230,0.268770, maf-5-some-pop 593 chr1 1155785 1155786 rs12090040 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop,maf-5-all-pops 593 chr1 1155803 1155804 rs11809575 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 505.000000,4503.000000, 0.100839,0.899161, maf-5-some-pop,maf-5-all-pops 593 chr1 1155855 1155855 rs201775526 0 + - - -/C genomic insertion unknown 0 0 intron,untranslated-3 between 1 1 1000GENOMES, 2 -,C, 4926.000000,82.000000, 0.983626,0.016374, 593 chr1 1156428 1156429 rs944369 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1748.000000,3260.000000, 0.349042,0.650958, maf-5-some-pop,maf-5-all-pops 593 chr1 1156474 1156474 rs150198396 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,T, 4951.000000,57.000000, 0.988618,0.011382, 593 chr1 1156654 1156655 rs75998592 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 579.000000,4429.000000, 0.115615,0.884385, maf-5-some-pop,maf-5-all-pops 593 chr1 1156734 1156735 rs79361728 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 589.000000,4419.000000, 0.117612,0.882388, maf-5-some-pop,maf-5-all-pops 593 chr1 1157339 1157340 rs56013947 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4386.000000,622.000000, 0.875799,0.124201, maf-5-some-pop,maf-5-all-pops 593 chr1 1157371 1157372 rs55683245 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 622.000000,4386.000000, 0.124201,0.875799, maf-5-some-pop,maf-5-all-pops 593 chr1 1157546 1157547 rs79118541 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop,maf-5-all-pops 593 chr1 1157563 1157564 rs75124586 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop,maf-5-all-pops 593 chr1 1157624 1157625 rs74374908 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop,maf-5-all-pops 593 chr1 1157630 1157631 rs79875872 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop,maf-5-all-pops 593 chr1 1157683 1157684 rs79281810 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1157704 1157705 rs79339398 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4386.000000,622.000000, 0.875799,0.124201, maf-5-some-pop,maf-5-all-pops 593 chr1 1157833 1157834 rs79561057 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4383.000000,625.000000, 0.875200,0.124800, maf-5-some-pop,maf-5-all-pops 593 chr1 1157861 1157862 rs78596995 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1157959 1157960 rs74350546 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 639.000000,4369.000000, 0.127596,0.872404, maf-5-some-pop,maf-5-all-pops 593 chr1 1157973 1157974 rs76056412 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop,maf-5-all-pops 593 chr1 1157990 1157991 rs74930764 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop,maf-5-all-pops 593 chr1 1158019 1158020 rs112678550 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4382.000000,626.000000, 0.875000,0.125000, maf-5-some-pop,maf-5-all-pops 593 chr1 1158069 1158070 rs114330234 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, 593 chr1 1158356 1158357 rs76888271 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4385.000000,623.000000, 0.875599,0.124401, 593 chr1 1158441 1158443 rs150930263 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CA, 144.000000,4864.000000, 0.028754,0.971246, 593 chr1 1158534 1158534 rs59317408 0 + - - -/AC genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,AC, 4386.000000,622.000000, 0.875799,0.124201, 593 chr1 1158562 1158564 rs57524763 0 + AC AC -/AC genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,AC, 607.000000,4401.000000, 0.121206,0.878794, 593 chr1 1158630 1158631 rs6603781 0 + A A A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 30 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 593 chr1 1158947 1158948 rs75967767 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4359.000000,649.000000, 0.870407,0.129593, maf-5-some-pop,maf-5-all-pops 593 chr1 1158974 1158975 rs74808088 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop,maf-5-all-pops 593 chr1 1159019 1159020 rs113206287 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4380.000000,628.000000, 0.874601,0.125399, maf-5-some-pop,maf-5-all-pops 593 chr1 1159023 1159024 rs77472198 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4366.000000,642.000000, 0.871805,0.128195, maf-5-some-pop,maf-5-all-pops 593 chr1 1159061 1159062 rs79028173 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop,maf-5-all-pops 593 chr1 1159106 1159107 rs114919826 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 593 chr1 1159174 1159175 rs530399201 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 622.000000,4386.000000, 0.124201,0.875799, 593 chr1 1159178 1159179 rs550680351 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4386.000000,622.000000, 0.875799,0.124201, 593 chr1 1159484 1159485 rs75700266 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4393.000000,615.000000, 0.877196,0.122804, maf-5-some-pop,maf-5-all-pops 593 chr1 1159516 1159517 rs6702268 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025958, maf-5-some-pop 593 chr1 1159539 1159540 rs6667998 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 593 chr1 1159661 1159666 rs112011543 0 + TTTTA TTTTA -/TTTTA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP, 2 -,TTTTA, 436.000000,4572.000000, 0.087061,0.912939, 593 chr1 1159728 1159729 rs112733189 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 623.000000,4385.000000, 0.124401,0.875599, 593 chr1 1160162 1160163 rs111452679 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop,maf-5-all-pops 593 chr1 1160225 1160226 rs75165450 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1160244 1160245 rs57994571 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 A,T, 4929.000000,79.000000, 0.984225,0.015775, 593 chr1 1160664 1160665 rs6671424 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 653.000000,4355.000000, 0.130391,0.869609, maf-5-some-pop 593 chr1 1160799 1160800 rs112760581 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 593 chr1 1161128 1161129 rs370635626 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 624.000000,4384.000000, 0.124601,0.875399, 593 chr1 1161233 1161234 rs74223867 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, 593 chr1 1161361 1161362 rs111698464 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4384.000000,624.000000, 0.875399,0.124601, maf-5-some-pop,maf-5-all-pops 593 chr1 1161382 1161383 rs74046651 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop,maf-5-all-pops 593 chr1 1161392 1161393 rs12087719 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4269.000000,739.000000, 0.852436,0.147564, maf-5-some-pop,maf-5-all-pops 593 chr1 1161640 1161641 rs78913203 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 593 chr1 1161716 1161717 rs115953853 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4388.000000,620.000000, 0.876198,0.123802, maf-5-some-pop,maf-5-all-pops 593 chr1 1161731 1161732 rs550794034 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 527.000000,4481.000000, 0.105232,0.894768, 593 chr1 1161742 1161743 rs138773558 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 67.000000,4941.000000, 0.013379,0.986621, 593 chr1 1161754 1161755 rs142693327 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 616.000000,4392.000000, 0.123003,0.876997, 593 chr1 1161755 1161756 rs147359526 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4407.000000,601.000000, 0.879992,0.120008, 593 chr1 1161779 1161780 rs113791678 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1161865 1161866 rs78107697 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4410.000000,598.000000, 0.880591,0.119409, maf-5-some-pop,maf-5-all-pops 593 chr1 1161930 1161931 rs76084981 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 593 chr1 1161966 1161967 rs75869787 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop,maf-5-all-pops 593 chr1 1162000 1162000 rs111614456 0 + - - -/C genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,C, 4446.000000,562.000000, 0.887780,0.112220, 593 chr1 1162113 1162114 rs116785759 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 593 chr1 1162171 1162172 rs114758303 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 593 chr1 1162540 1162541 rs80322353 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 596.000000,4412.000000, 0.119010,0.880990, maf-5-some-pop,maf-5-all-pops 593 chr1 1162681 1162682 rs118047549 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop,maf-5-all-pops 593 chr1 1162746 1162747 rs536569861 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 593 chr1 1163005 1163006 rs35194949 0 - C C G/T genomic single by-cluster,by-frequency,by-hapmap 0.032578 0.1234 intron exact 1 3 ABI,ILLUMINA,KRIBB_YJKIM, 2 G,T, 950.000000,16.000000, 0.983437,0.016563, 593 chr1 1163064 1163065 rs58937376 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1695.000000,3313.000000, 0.338458,0.661542, maf-5-some-pop 593 chr1 1163171 1163172 rs112819941 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 593 chr1 1163265 1163266 rs112328659 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 436.000000,4572.000000, 0.087061,0.912939, maf-5-some-pop 593 chr1 1163354 1163355 rs55701216 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop,maf-5-all-pops 593 chr1 1163448 1163449 rs56070543 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 609.000000,4399.000000, 0.121605,0.878395, maf-5-some-pop,maf-5-all-pops 593 chr1 1163473 1163474 rs56378990 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 4415.000000,593.000000, 0.881589,0.118411, maf-5-some-pop,maf-5-all-pops 593 chr1 1163766 1163767 rs182022102 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 593 chr1 1163772 1163773 rs78757251 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 593 chr1 1163803 1163804 rs7515488 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4072.000000,936.000000, 0.813099,0.186901, maf-5-some-pop,maf-5-all-pops 593 chr1 1163811 1163811 rs147694774 0 + - - -/GACA genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BL,EVA-GONL,LUNTER, 2 -,GACA, 3865.000000,1143.000000, 0.771765,0.228235, 593 chr1 1164030 1164031 rs61744664 0 + A A A/G genomic single unknown 0 0 ncRNA,missense exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,CORNELL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop 593 chr1 1164071 1164072 rs61745645 0 + C C C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,CORNELL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop 593 chr1 1164089 1164090 rs61745652 0 + T T C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,CORNELL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop 593 chr1 1164178 1164179 rs76230175 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-5 exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,maf-5-all-pops 593 chr1 1164250 1164250 rs141133166 0 + - - -/CA genomic insertion unknown 0 0 ncRNA,untranslated-5 between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,CA, 4802.000000,206.000000, 0.958866,0.041134, 593 chr1 1164464 1164465 rs115503846 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4500.000000,508.000000, 0.898562,0.101438, maf-5-some-pop 593 chr1 1164509 1164510 rs114433605 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 593 chr1 1164528 1164529 rs139694133 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, 593 chr1 1164537 1164538 rs77668548 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4500.000000,508.000000, 0.898562,0.101438, maf-5-some-pop 593 chr1 1164539 1164540 rs80229541 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4386.000000,622.000000, 0.875799,0.124201, maf-5-some-pop,maf-5-all-pops 593 chr1 1164563 1164564 rs116359778 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 593 chr1 1164623 1164624 rs111987858 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop 593 chr1 1164627 1164628 rs79893391 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop 593 chr1 1164686 1164687 rs75188282 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 622.000000,4386.000000, 0.124201,0.875799, maf-5-some-pop,maf-5-all-pops 593 chr1 1164749 1164749 rs113272753 0 + - - -/C genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,TISHKOFF, 2 -,C, 3875.000000,1133.000000, 0.773762,0.226238, 593 chr1 1164758 1164758 rs202035270 0 + - - -/G genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,TISHKOFF, 2 -,G, 4500.000000,508.000000, 0.898562,0.101438, 593 chr1 1164929 1164930 rs111760935 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 593 chr1 1165280 1165282 rs148801934 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,CA, 623.000000,4385.000000, 0.124401,0.875599, 593 chr1 1165320 1165322 rs143841174 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,AT, 631.000000,4377.000000, 0.125998,0.874002, 593 chr1 1165360 1165361 rs76024681 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4384.000000,624.000000, 0.875399,0.124601, maf-5-some-pop,maf-5-all-pops 593 chr1 1165470 1165471 rs77819818 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop,maf-5-all-pops 593 chr1 1165521 1165522 rs12089404 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop,maf-5-all-pops 593 chr1 1165538 1165539 rs11260563 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2699.000000,2309.000000, 0.538938,0.461062, maf-5-some-pop 593 chr1 1165703 1165704 rs368245192 0 + T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,T, 60.000000,4948.000000, 0.011981,0.988019, 593 chr1 1165724 1165725 rs77696650 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1165820 1165821 rs79493008 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 593 chr1 1165842 1165842 rs553378637 0 + - - -/TTT genomic insertion unknown 0 0 intron,near-gene-5 between 1 2 1000GENOMES,SSIP, 2 -,TTT, 4727.000000,281.000000, 0.943890,0.056110, 593 chr1 1165879 1165880 rs371474367 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 593 chr1 1166074 1166075 rs55893507 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 623.000000,4385.000000, 0.124401,0.875599, 593 chr1 1166085 1166086 rs11260564 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,CSHL-HAPMAP,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, 593 chr1 1166176 1166177 rs55717744 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop,maf-5-all-pops 593 chr1 1166204 1166205 rs56316126 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4385.000000,623.000000, 0.875599,0.124401, maf-5-some-pop,maf-5-all-pops 593 chr1 1166388 1166389 rs78379068 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 593 chr1 1166886 1166887 rs60252802 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 886.000000,4122.000000, 0.176917,0.823083, maf-5-some-pop,maf-5-all-pops 593 chr1 1167090 1167099 rs112603604 0 + CCCCGGGAA CCCCGGGAA -/CCCCGGGAA genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,CCCCGGGAA, 810.000000,4198.000000, 0.161741,0.838259, 593 chr1 1167795 1167796 rs190796582 0 + C C C/T genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4199.000000,809.000000, 0.838458,0.161542, 593 chr1 1168179 1168180 rs12085009 0 + G G C/G genomic single unknown 0 0 near-gene-5,missense exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,EXOME_CHIP,NHLBI-ESP,SC_SNP, 2 C,G, 534.000000,4474.000000, 0.106629,0.893371, 593 chr1 1168842 1168843 rs148754856 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 593 chr1 1169093 1169094 rs45574035 0 + G G C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 8 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,G, 85.000000,4923.000000, 0.016973,0.983027, 593 chr1 1169484 1169485 rs45578847 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,G, 336.000000,4672.000000, 0.067093,0.932907, maf-5-some-pop 593 chr1 1169636 1169637 rs79425787 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop,maf-5-all-pops 593 chr1 1169727 1169728 rs45591840 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4848.000000,160.000000, 0.968051,0.031949, 593 chr1 1169972 1169973 rs56852924 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop 593 chr1 1170004 1170005 rs116449540 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 593 chr1 1170147 1170148 rs61353980 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 593 chr1 1170478 1170479 rs78277880 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops 593 chr1 1170586 1170587 rs78424188 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,maf-5-all-pops 593 chr1 1170681 1170682 rs114640435 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 593 chr1 1170728 1170729 rs79774771 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop 593 chr1 1170981 1170982 rs77994686 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop 593 chr1 1171021 1171022 rs12089192 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 852.000000,4156.000000, 0.170128,0.829872, maf-5-some-pop,maf-5-all-pops 593 chr1 1171099 1171100 rs12096608 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 823.000000,4185.000000, 0.164337,0.835663, maf-5-some-pop,maf-5-all-pops 593 chr1 1171152 1171153 rs12093363 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop 593 chr1 1171248 1171249 rs7528416 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop 593 chr1 1171376 1171377 rs7536250 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4123.000000,885.000000, 0.823283,0.176717, maf-5-some-pop,maf-5-all-pops 593 chr1 1171416 1171417 rs6603782 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1759.000000,3249.000000, 0.351238,0.648762, maf-5-some-pop 593 chr1 1171451 1171452 rs186391484 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 593 chr1 1171454 1171455 rs189721114 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, 593 chr1 1171577 1171578 rs78241900 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 A,G, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop,maf-5-all-pops 593 chr1 1171682 1171683 rs7536568 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4300.000000,708.000000, 0.858626,0.141374, maf-5-some-pop,maf-5-all-pops 593 chr1 1171835 1171836 rs186263536 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 593 chr1 1171966 1171967 rs144656072 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 593 chr1 1172084 1172085 rs114702966 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop,maf-5-all-pops 593 chr1 1172121 1172122 rs139799709 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 59.000000,4949.000000, 0.011781,0.988219, 593 chr1 1172211 1172212 rs115281850 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 593 chr1 1172389 1172390 rs79957757 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, 593 chr1 1172906 1172907 rs715643 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 593 chr1 1173247 1173248 rs113509529 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,JMKIDD_LAB,TISHKOFF, 2 A,G, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 593 chr1 1173610 1173611 rs6697886 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 1105.000000,3903.000000, 0.220647,0.779353, maf-5-some-pop,maf-5-all-pops 593 chr1 1174092 1174093 rs115614180 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4952.000000,56.000000, 0.988818,0.011182, 593 chr1 1174262 1174263 rs80242057 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop 593 chr1 1174281 1174282 rs4970364 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3296.000000,1712.000000, 0.658147,0.341853, maf-5-some-pop 593 chr1 1174953 1174954 rs6687563 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 673.000000,4335.000000, 0.134385,0.865615, maf-5-some-pop,maf-5-all-pops 593 chr1 1175304 1175305 rs115765087 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 392.000000,4616.000000, 0.078275,0.921725, maf-5-some-pop,maf-5-all-pops 593 chr1 1175746 1175747 rs113143549 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4337.000000,671.000000, 0.866014,0.133986, maf-5-some-pop,maf-5-all-pops 593 chr1 1175769 1175770 rs114105718 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 428.000000,4580.000000, 0.085463,0.914537, maf-5-some-pop,maf-5-all-pops 593 chr1 1175960 1175960 rs565331586 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,C, 4381.000000,627.000000, 0.874800,0.125200, 593 chr1 1176006 1176007 rs569491641 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, 593 chr1 1176226 1176227 rs115144100 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 G,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop,maf-5-all-pops 593 chr1 1176432 1176433 rs12096091 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP, 2 A,G, 4153.000000,855.000000, 0.829273,0.170727, maf-5-some-pop,maf-5-all-pops 593 chr1 1176596 1176597 rs6675798 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 912.000000,4096.000000, 0.182109,0.817891, maf-5-some-pop,maf-5-all-pops 593 chr1 1177018 1177019 rs77550145 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop,maf-5-all-pops 593 chr1 1177210 1177211 rs79361800 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop,maf-5-all-pops 593 chr1 1177473 1177474 rs2297863 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4156.000000,852.000000, 0.829872,0.170128, maf-5-some-pop,maf-5-all-pops 593 chr1 1177629 1177630 rs2297864 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 4156.000000,852.000000, 0.829872,0.170128, maf-5-some-pop 593 chr1 1177772 1177773 rs79861994 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 593 chr1 1177820 1177821 rs58080375 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 593 chr1 1177892 1177893 rs12410680 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,NHLBI-ESP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 593 chr1 1177918 1177919 rs3835300 0 + T T -/T genomic deletion unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP,YUSUKE, 2 -,T, 374.000000,4634.000000, 0.074680,0.925319, 593 chr1 1178243 1178244 rs74511182 0 + G G C/G genomic single unknown 0 0 missense exact 1 3 1000GENOMES,EXOME_CHIP,JMKIDD_LAB, 2 C,G, 136.000000,4872.000000, 0.027157,0.972844, 593 chr1 1178244 1178245 rs11260566 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP, 2 C,T, 4113.000000,895.000000, 0.821286,0.178714, maf-5-some-pop,maf-5-all-pops 593 chr1 1178265 1178266 rs77651834 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 593 chr1 1178452 1178453 rs114921901 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop 593 chr1 1178481 1178482 rs78555129 0 + A A A/G genomic single unknown 0 0 missense exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP, 2 A,G, 4082.000000,926.000000, 0.815096,0.184904, maf-5-some-pop 593 chr1 1178924 1178925 rs12093154 0 + G G A/G genomic single unknown 0 0 missense exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP, 2 A,G, 659.000000,4349.000000, 0.131589,0.868411, maf-5-some-pop,maf-5-all-pops 593 chr1 1179029 1179030 rs111673713 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 714.000000,4294.000000, 0.142572,0.857428, maf-5-some-pop,maf-5-all-pops 593 chr1 1179201 1179202 rs112407210 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 593 chr1 1179308 1179309 rs113164957 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 630.000000,4378.000000, 0.125799,0.874201, maf-5-some-pop,maf-5-all-pops 593 chr1 1179384 1179385 rs199525665 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, 594 chr1 1179982 1179983 rs76342560 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 845.000000,4163.000000, 0.168730,0.831270, maf-5-some-pop,maf-5-all-pops 594 chr1 1180389 1180390 rs115765289 0 + G G C/G genomic single by-frequency,by-1000genomes 0.309039 0.242929 intron exact 1 2 1000GENOMES,GMI, 2 C,G, 49.000000,71.000000, 0.408333,0.591667, maf-5-some-pop,maf-5-all-pops 594 chr1 1180778 1180779 rs55812745 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1528.000000,3480.000000, 0.305112,0.694888, maf-5-some-pop 594 chr1 1181371 1181372 rs72631899 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop,maf-5-all-pops 594 chr1 1181403 1181404 rs79597171 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 594 chr1 1181595 1181596 rs140160339 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 594 chr1 1181750 1181751 rs6603783 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 C,T, 1116.000000,3892.000000, 0.222843,0.777157, maf-5-some-pop,maf-5-all-pops 594 chr1 1181786 1181787 rs111517457 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 594 chr1 1182030 1182031 rs7539412 0 + C C C/T genomic single unknown 0 0 missense exact 1 3 1000GENOMES,NHLBI-ESP,WI_SSAHASNP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 594 chr1 1182349 1182350 rs7541926 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 594 chr1 1182408 1182409 rs182300651 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 594 chr1 1182904 1182905 rs75668831 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 594 chr1 1182986 1182987 rs192108457 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4944.000000,64.000000, 0.987220,0.012780, 594 chr1 1183396 1183397 rs78446752 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 594 chr1 1183442 1183443 rs528443018 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 651.000000,4357.000000, 0.129992,0.870008, 594 chr1 1183448 1183449 rs571351753 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 4357.000000,651.000000, 0.870008,0.129992, 594 chr1 1183454 1183455 rs372484838 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 4358.000000,650.000000, 0.870208,0.129792, 594 chr1 1183520 1183521 rs116698703 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop,maf-5-all-pops 594 chr1 1183528 1183529 rs114232218 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 594 chr1 1183585 1183586 rs577754832 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4596.000000,412.000000, 0.917732,0.082268, 594 chr1 1183597 1183598 rs138672134 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4350.000000,658.000000, 0.868610,0.131390, 594 chr1 1183688 1183689 rs550837006 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 361.000000,4647.000000, 0.072085,0.927915, 594 chr1 1183757 1183758 rs139170693 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 594 chr1 1183857 1183858 rs113908945 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP, 2 G,T, 4062.000000,946.000000, 0.811102,0.188898, maf-5-some-pop,maf-5-all-pops 594 chr1 1183864 1183865 rs111798607 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP, 2 C,T, 4081.000000,927.000000, 0.814896,0.185104, maf-5-some-pop,maf-5-all-pops 594 chr1 1183976 1183977 rs377075401 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,C, 4045.000000,963.000000, 0.807708,0.192292, 594 chr1 1184045 1184046 rs547312278 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, 594 chr1 1184065 1184066 rs373952942 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 4257.000000,751.000000, 0.850040,0.149960, 594 chr1 1184088 1184089 rs28589502 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSAHASNP,SSMP, 2 A,G, 3952.000000,1056.000000, 0.789137,0.210863, 594 chr1 1184177 1184178 rs12758310 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSAHASNP, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, 594 chr1 1184243 1184244 rs117412088 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 880.000000,4128.000000, 0.175719,0.824281, maf-5-some-pop,maf-5-all-pops 594 chr1 1184244 1184245 rs561118511 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, 594 chr1 1184284 1184285 rs111811102 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,SSMP, 2 C,G, 1039.000000,3969.000000, 0.207468,0.792532, 594 chr1 1184482 1184483 rs368553032 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 4919.000000,89.000000, 0.982228,0.017772, 594 chr1 1185007 1185008 rs12123413 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 4107.000000,901.000000, 0.820088,0.179912, 594 chr1 1185259 1185260 rs4567233 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3813.000000,1195.000000, 0.761382,0.238618, 594 chr1 1185506 1185507 rs138025977 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 594 chr1 1185523 1185524 rs115270700 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop,maf-5-all-pops 594 chr1 1185557 1185558 rs142609243 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 370.000000,4638.000000, 0.073882,0.926118, 594 chr1 1186021 1186022 rs115960280 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 594 chr1 1186195 1186196 rs572678014 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 73.000000,4935.000000, 0.014577,0.985423, 594 chr1 1186271 1186272 rs116388653 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, 594 chr1 1186340 1186341 rs12059759 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ILLUMINA,SC_SNP,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 594 chr1 1186736 1186737 rs58561267 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BL,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI,SSMP, 2 -,T, 4592.000000,416.000000, 0.916933,0.083067, 594 chr1 1186747 1186748 rs201918057 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 978.000000,4030.000000, 0.195288,0.804712, 594 chr1 1186820 1186821 rs140918627 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4727.000000,281.000000, 0.943890,0.056110, 594 chr1 1186997 1186998 rs113679913 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 866.000000,4142.000000, 0.172923,0.827077, 594 chr1 1187447 1187448 rs112615655 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 594 chr1 1187640 1187641 rs74491544 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop,maf-5-all-pops 594 chr1 1187866 1187867 rs112905538 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 425.000000,4583.000000, 0.084864,0.915136, 594 chr1 1187992 1187993 rs6603786 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,G, 4374.000000,634.000000, 0.873403,0.126597, maf-5-some-pop,maf-5-all-pops 594 chr1 1188129 1188130 rs6688457 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB,TISHKOFF, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop 594 chr1 1188179 1188180 rs7541831 0 + C C A/C genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.3478 0.230076 unknown exact 1 3 ILLUMINA,KRIBB_YJKIM,WI_SSAHASNP, 2 A,C, 65.000000,225.000000, 0.224138,0.775862, maf-5-some-pop,maf-5-all-pops 594 chr1 1188224 1188225 rs6603787 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4575.000000,433.000000, 0.913538,0.086462, maf-5-some-pop 594 chr1 1188305 1188306 rs6690960 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 116.000000,4892.000000, 0.023163,0.976837, 594 chr1 1188943 1188944 rs112743287 0 + T T G/T genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 G,T, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1189604 1189605 rs116866065 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,SSMP, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1189662 1189663 rs12060210 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,BUSHMAN,CORNELL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop 594 chr1 1190060 1190061 rs41307035 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4215.000000,793.000000, 0.841653,0.158347, maf-5-some-pop 594 chr1 1190205 1190206 rs75469826 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 594 chr1 1190206 1190207 rs41307037 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, 594 chr1 1190684 1190685 rs41303853 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 594 chr1 1190913 1190914 rs35025185 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,T, 417.000000,4591.000000, 0.083267,0.916733, 594 chr1 1191650 1191651 rs115712376 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1191869 1191870 rs3818646 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,CGAP-GAI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 C,T, 4661.000000,347.000000, 0.930711,0.069289, maf-5-some-pop 594 chr1 1192514 1192515 rs7524470 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,WI_SSAHASNP, 2 A,G, 4590.000000,418.000000, 0.916534,0.083467, maf-5-some-pop 594 chr1 1192766 1192767 rs539731489 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSIP, 2 C,G, 4846.000000,162.000000, 0.967652,0.032348, 594 chr1 1192788 1192789 rs559299473 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 594 chr1 1192795 1192796 rs111483377 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 A,G, 319.000000,4689.000000, 0.063698,0.936302, maf-5-some-pop,maf-5-all-pops 594 chr1 1192962 1192963 rs112742853 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 594 chr1 1193020 1193021 rs193168761 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 594 chr1 1193111 1193112 rs115649588 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 594 chr1 1193431 1193432 rs111633162 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 374.000000,4634.000000, 0.074680,0.925319, 594 chr1 1193475 1193476 rs12066047 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 372.000000,4636.000000, 0.074281,0.925719, 594 chr1 1193586 1193587 rs59549363 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP, 2 -,T, 3235.000000,1773.000000, 0.645966,0.354034, 594 chr1 1193712 1193713 rs12070338 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4135.000000,873.000000, 0.825679,0.174321, maf-5-some-pop 594 chr1 1193722 1193723 rs12072310 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4135.000000,873.000000, 0.825679,0.174321, maf-5-some-pop 594 chr1 1193765 1193766 rs116167408 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,C, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 594 chr1 1193851 1193852 rs78035253 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop 594 chr1 1194472 1194473 rs201926262 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,T, 293.000000,4715.000000, 0.058506,0.941494, 594 chr1 1194544 1194545 rs77131666 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP, 2 A,T, 3487.000000,1521.000000, 0.696286,0.303714, 594 chr1 1194637 1194638 rs111692369 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 594 chr1 1194803 1194804 rs11804831 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3435.000000,1573.000000, 0.685903,0.314097, maf-5-some-pop,microattr-tpa 594 chr1 1195323 1195324 rs115283648 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 594 chr1 1195449 1195450 rs114216792 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 594 chr1 1195592 1195593 rs12069094 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 594 chr1 1195656 1195657 rs60397007 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, 594 chr1 1195689 1195690 rs11260568 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop 594 chr1 1195767 1195768 rs74942270 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 594 chr1 1195819 1195820 rs58785846 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop 594 chr1 1195882 1195883 rs114569858 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 594 chr1 1196373 1196374 rs72894077 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4710.000000,298.000000, 0.940495,0.059505, maf-5-some-pop 594 chr1 1196470 1196471 rs6673601 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop 594 chr1 1196862 1196863 rs6659787 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 594 chr1 1197271 1197273 rs111706623 0 + TT TT -/TT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,TISHKOFF, 2 -,TT, 356.000000,4652.000000, 0.071086,0.928914, 594 chr1 1197329 1197330 rs75805572 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,TISHKOFF, 2 C,T, 4754.000000,254.000000, 0.949281,0.050719, 594 chr1 1197540 1197541 rs115807277 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4873.000000,135.000000, 0.973043,0.026957, 594 chr1 1197590 1197591 rs6704013 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop 594 chr1 1197697 1197698 rs72631900 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 594 chr1 1197866 1197867 rs116082107 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, 594 chr1 1198346 1198347 rs75114013 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 594 chr1 1198451 1198452 rs150671997 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 594 chr1 1198496 1198496 rs549945459 0 + - - -/GGTGAACACAGACGCTACAGGC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GGTGAACACAGACGCTACAGGC, 4718.000000,290.000000, 0.942093,0.057907, 594 chr1 1198509 1198510 rs115272858 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 594 chr1 1198577 1198578 rs188541999 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 594 chr1 1198617 1198618 rs12563338 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop 594 chr1 1199206 1199207 rs58352886 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 99.000000,4909.000000, 0.019768,0.980232, 594 chr1 1199211 1199211 rs559199060 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,A, 3066.000000,1942.000000, 0.612220,0.387780, 594 chr1 1199572 1199573 rs79797881 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4854.000000,154.000000, 0.969249,0.030751, 594 chr1 1199576 1199577 rs114566087 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 594 chr1 1200191 1200192 rs112631554 0 + C C C/G genomic single unknown 0 0 intron,missense exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4590.000000,418.000000, 0.916534,0.083467, 594 chr1 1200201 1200202 rs145877170 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 5 1000GENOMES,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,SSMP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 594 chr1 1200490 1200491 rs111487085 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 594 chr1 1200946 1200946 rs537238625 0 + - - -/GT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GT, 4599.000000,409.000000, 0.918331,0.081669, 594 chr1 1201215 1201216 rs11260569 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 594 chr1 1201355 1201356 rs59074371 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 594 chr1 1201631 1201632 rs12402622 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CLINSEQ_SNP,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop 594 chr1 1201639 1201640 rs11260570 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 495.000000,4513.000000, 0.098842,0.901158, maf-5-some-pop 594 chr1 1201938 1201939 rs138355935 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 594 chr1 1201944 1201945 rs141828946 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 113.000000,4895.000000, 0.022564,0.977436, 594 chr1 1202436 1202437 rs139183246 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,T, 4836.000000,172.000000, 0.965655,0.034345, 594 chr1 1202470 1202471 rs149960518 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 594 chr1 1202656 1202675 rs367664081 0 + CAGCAAGGGGGAGAGTCAC CAGCAAGGGGGAGAGTCAC -/CAGCAAGGGGGAGAGTCAC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CAGCAAGGGGGAGAGTCAC, 166.000000,4842.000000, 0.033147,0.966853, 594 chr1 1203386 1203387 rs60981775 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 336.000000,4672.000000, 0.067093,0.932907, maf-5-some-pop 594 chr1 1203463 1203464 rs114345030 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 594 chr1 1203617 1203618 rs376002876 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 594 chr1 1203731 1203732 rs76784742 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop,maf-5-all-pops 594 chr1 1203744 1203745 rs72894079 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, 594 chr1 1204154 1204155 rs183159656 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 73.000000,4935.000000, 0.014577,0.985423, 594 chr1 1204224 1204231 rs553345530 0 + TTTTTTT TTTTTTT -/TTTTTTT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TTTTTTT, 94.000000,4914.000000, 0.018770,0.981230, 594 chr1 1204353 1204354 rs115137086 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 594 chr1 1204479 1204479 rs145781917 0 + - - -/CAT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,CAT, 4565.000000,443.000000, 0.911542,0.088459, 594 chr1 1204582 1204583 rs540688116 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 90.000000,4918.000000, 0.017971,0.982029, 594 chr1 1205154 1205155 rs12073590 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4623.000000,385.000000, 0.923123,0.076877, maf-5-some-pop 594 chr1 1205335 1205336 rs79455564 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 594 chr1 1205337 1205338 rs114976177 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 594 chr1 1205434 1205435 rs114928099 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 236.000000,4772.000000, 0.047125,0.952875, maf-5-some-pop,maf-5-all-pops 594 chr1 1205975 1205976 rs56919565 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,G, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 594 chr1 1206618 1206619 rs6668223 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 594 chr1 1206777 1206778 rs141441333 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 594 chr1 1206860 1206861 rs75189781 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 594 chr1 1207214 1207215 rs12068885 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4530.000000,478.000000, 0.904553,0.095447, 594 chr1 1208194 1208195 rs115231600 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 170.000000,4838.000000, 0.033946,0.966054, 594 chr1 1208275 1208276 rs79400130 0 + G G C/G genomic single by-frequency,by-1000genomes 0.000918 0.0214 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 2.000000,118.000000, 0.016667,0.983333, 594 chr1 1208286 1208287 rs114152485 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 594 chr1 1209183 1209183 rs142366119 0 + - - -/CGC/CGCCGC genomic insertion unknown 0 0 near-gene-5,untranslated-5 between 1 2 1000GENOMES,LUNTER, 3 -,CGC,CGCCGC, 3451.000000,1549.000000,8.000000, 0.689098,0.309305,0.001597, 594 chr1 1209481 1209482 rs111357358 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, maf-5-some-pop,maf-5-all-pops 594 chr1 1210299 1210300 rs75855294 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop 594 chr1 1210332 1210333 rs115554764 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop 594 chr1 1210351 1210352 rs11260575 0 + A A A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2626.000000,2382.000000, 0.524361,0.475639, maf-5-some-pop,maf-5-all-pops 594 chr1 1210359 1210360 rs11260576 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2843.000000,2165.000000, 0.567692,0.432308, maf-5-some-pop,maf-5-all-pops 594 chr1 1210434 1210435 rs74046660 0 + A A A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 A,G, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop 594 chr1 1210467 1210468 rs114964868 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop,maf-5-all-pops 594 chr1 1210470 1210471 rs11260577 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2417.000000,2591.000000, 0.482628,0.517372, maf-5-some-pop,maf-5-all-pops 594 chr1 1210743 1210744 rs76370872 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 594 chr1 1210784 1210785 rs77333168 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 594 chr1 1210847 1210848 rs56673092 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1608.000000,3400.000000, 0.321086,0.678914, maf-5-some-pop 594 chr1 1210962 1210963 rs6689813 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1987.000000,3021.000000, 0.396765,0.603235, maf-5-some-pop 594 chr1 1211291 1211292 rs6685064 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2852.000000,2156.000000, 0.569489,0.430511, maf-5-some-pop 594 chr1 1211602 1211602 rs78351641 0 + - - -/G genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,G, 3401.000000,1607.000000, 0.679113,0.320887, 594 chr1 1211926 1211927 rs4970430 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3341.000000,1667.000000, 0.667133,0.332867, 594 chr1 1212226 1212228 rs150897355 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,AT, 171.000000,4837.000000, 0.034145,0.965855, 594 chr1 1212569 1212570 rs150531736 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 594 chr1 1212648 1212649 rs59225223 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 C,T, 2393.000000,2615.000000, 0.477835,0.522165, 594 chr1 1212794 1212795 rs56210437 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1984.000000,3024.000000, 0.396166,0.603834, maf-5-some-pop,maf-5-all-pops 594 chr1 1213012 1213013 rs60358061 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 336.000000,4672.000000, 0.067093,0.932907, 594 chr1 1213125 1213126 rs112719924 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4673.000000,335.000000, 0.933107,0.066893, 594 chr1 1213210 1213210 rs565672730 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 3217.000000,1791.000000, 0.642372,0.357628, 594 chr1 1213222 1213223 rs113095492 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,GMI, 2 A,T, 4936.000000,72.000000, 0.985623,0.014377, 594 chr1 1213223 1213224 rs7549601 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,GMI,HGSV,ILLUMINA-UK,WI_SSAHASNP, 2 A,T, 2381.000000,2627.000000, 0.475439,0.524561, 594 chr1 1213265 1213266 rs114531906 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,maf-5-all-pops 594 chr1 1213495 1213496 rs7512475 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 594 chr1 1213787 1213787 rs59508795 0 + - - -/A genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 2631.000000,2377.000000, 0.525359,0.474641, 594 chr1 1213929 1213930 rs7552460 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 228.000000,4780.000000, 0.045527,0.954473, 594 chr1 1213935 1213936 rs6665791 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1974.000000,3034.000000, 0.394169,0.605831, maf-5-some-pop,maf-5-all-pops 594 chr1 1213994 1213995 rs143883945 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4926.000000,82.000000, 0.983626,0.016374, 594 chr1 1214152 1214153 rs147007260 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 594 chr1 1214413 1214414 rs111920011 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 594 chr1 1214541 1214542 rs80025552 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 594 chr1 1214677 1214678 rs115307287 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop 594 chr1 1214804 1214805 rs113867217 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4504.000000,504.000000, 0.899361,0.100639, 594 chr1 1215077 1215078 rs74046665 0 + A A A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 2855.000000,2153.000000, 0.570088,0.429912, maf-5-some-pop,maf-5-all-pops 594 chr1 1215108 1215109 rs79179971 0 + G G -/G genomic deletion unknown 0 0 near-gene-3,near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP, 2 -,G, 2151.000000,2857.000000, 0.429513,0.570487, 594 chr1 1215110 1215111 rs536702299 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 594 chr1 1215135 1215136 rs74046666 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA-UK, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 594 chr1 1215259 1215260 rs74950664 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 594 chr1 1215261 1215262 rs57834430 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop 594 chr1 1215380 1215381 rs80133983 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, 594 chr1 1215403 1215404 rs116639471 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 594 chr1 1215423 1215424 rs1268339 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SSMP,TISHKOFF, 2 C,T, 3476.000000,1532.000000, 0.694089,0.305911, maf-5-some-pop 594 chr1 1215711 1215712 rs12079515 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4459.000000,549.000000, 0.890375,0.109625, 594 chr1 1215721 1215722 rs187261378 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 80.000000,4928.000000, 0.015974,0.984026, 594 chr1 1215795 1215796 rs7547316 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4779.000000,229.000000, 0.954273,0.045727, 594 chr1 1215848 1215849 rs7547329 0 + A A A/T genomic single unknown 0 0 ncRNA,untranslated-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,WI_SSAHASNP, 2 A,T, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 594 chr1 1215850 1215851 rs77053883 0 + A A A/T genomic single unknown 0 0 ncRNA,untranslated-5 exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,T, 4950.000000,58.000000, 0.988419,0.011582, 594 chr1 1216194 1216195 rs55834051 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1594.000000,3414.000000, 0.318291,0.681709, maf-5-some-pop 594 chr1 1216257 1216258 rs79596825 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 594 chr1 1216469 1216470 rs57513698 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 4875.000000,133.000000, 0.973442,0.026557, 594 chr1 1216542 1216543 rs377350215 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 594 chr1 1216550 1216552 rs57961296 0 + GG GG -/GG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,HGSV, 2 -,GG, 1597.000000,3411.000000, 0.318890,0.681110, 594 chr1 1217010 1217011 rs1262894 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SEQUENOM,SSMP,TISHKOFF, 2 A,C, 3958.000000,1050.000000, 0.790335,0.209665, maf-5-some-pop,maf-5-all-pops 594 chr1 1217019 1217020 rs1262895 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 820.000000,4188.000000, 0.163738,0.836262, maf-5-some-pop 594 chr1 1217020 1217021 rs57558541 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 594 chr1 1217257 1217258 rs1262896 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,G, 821.000000,4187.000000, 0.163938,0.836062, maf-5-some-pop 594 chr1 1218085 1218086 rs6603788 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2657.000000,2351.000000, 0.530551,0.469449, maf-5-some-pop,maf-5-all-pops 594 chr1 1218188 1218189 rs142333287 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 594 chr1 1218333 1218334 rs146421901 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, 594 chr1 1218544 1218545 rs114864479 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop,maf-5-all-pops 594 chr1 1218654 1218655 rs114027205 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 594 chr1 1218793 1218794 rs113265331 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 594 chr1 1218799 1218800 rs12076303 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 594 chr1 1218851 1218852 rs7519613 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4460.000000,548.000000, 0.890575,0.109425, 594 chr1 1218889 1218890 rs7519699 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 533.000000,4475.000000, 0.106430,0.893570, 594 chr1 1219034 1219035 rs111348156 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 594 chr1 1219774 1219775 rs12077700 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop 594 chr1 1219930 1219931 rs12073801 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,TISHKOFF, 2 G,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 594 chr1 1219940 1219941 rs115834287 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 540.000000,4468.000000, 0.107827,0.892173, maf-5-some-pop 594 chr1 1219963 1219964 rs536630346 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 594 chr1 1220135 1220136 rs2144440 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop 594 chr1 1220222 1220223 rs77848928 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 594 chr1 1220366 1220367 rs74046667 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 594 chr1 1220424 1220425 rs6662635 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4631.000000,377.000000, 0.924720,0.075280, maf-5-some-pop 594 chr1 1220503 1220504 rs2064600 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1404.000000,3604.000000, 0.280351,0.719649, maf-5-some-pop 594 chr1 1220609 1220610 rs115561814 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 594 chr1 1220764 1220765 rs72896205 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 594 chr1 1220821 1220822 rs113921179 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 594 chr1 1220924 1220925 rs1739854 0 + A A A/G genomic single by-frequency,by-hapmap 0.025404 0.109803 intron exact 1 1 SC_JCM, 2 A,G, 537.000000,7.000000, 0.987132,0.012868, maf-5-some-pop 594 chr1 1220953 1220954 rs12751100 0 + G G A/G genomic single unknown 0 0 coding-synon,intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2217.000000,2791.000000, 0.442692,0.557308, maf-5-some-pop 594 chr1 1221000 1221001 rs72896210 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 7 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4666.000000,342.000000, 0.931709,0.068291, maf-5-some-pop,maf-5-all-pops 594 chr1 1221054 1221055 rs568430583 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4926.000000,82.000000, 0.983626,0.016374, 594 chr1 1221137 1221138 rs11260578 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1521.000000,3487.000000, 0.303714,0.696286, maf-5-some-pop 594 chr1 1221275 1221276 rs113638421 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 594 chr1 1221301 1221302 rs113398060 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 594 chr1 1221435 1221436 rs2229831 0 + A A A/T cDNA single by-cluster 0.035077 0.127702 ncRNA,missense exact 1 2 ILLUMINA,WICVAR, 2 A,T, 55.000000,1.000000, 0.982143,0.017857, 594 chr1 1221716 1221717 rs13306647 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,IMCJ-GDT,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3485.000000,1523.000000, 0.695887,0.304113, maf-5-some-pop,maf-5-all-pops 594 chr1 1221727 1221728 rs72896212 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 594 chr1 1221911 1221912 rs6660742 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,BUSHMAN, 2 C,T, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop,maf-5-all-pops 594 chr1 1221917 1221918 rs563942515 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 99.000000,4909.000000, 0.019768,0.980232, 594 chr1 1222406 1222407 rs946415 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,HGSV,ILLUMINA-UK,NHLBI-ESP,TSC-CSHL, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop 594 chr1 1222597 1222598 rs74046669 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop 594 chr1 1222689 1222690 rs115316182 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop 594 chr1 1222738 1222739 rs2273273 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,TISHKOFF,YUSUKE, 2 C,G, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop,maf-5-all-pops 594 chr1 1222957 1222958 rs111819661 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 7 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,NHLBI-ESP,SSMP, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 594 chr1 1223384 1223385 rs2228579 0 + G G C/G genomic single unknown 0 0 ncRNA,missense exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,EXOME_CHIP,GMI,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,WIAF-CSNP, 2 C,G, 1641.000000,3367.000000, 0.327676,0.672324, maf-5-some-pop,maf-5-all-pops 594 chr1 1223426 1223427 rs13306645 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,IMCJ-GDT,SSMP, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 594 chr1 1223465 1223466 rs58081058 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,LUNTER,SSMP, 2 -,C, 872.000000,4136.000000, 0.174121,0.825879, 594 chr1 1223528 1223529 rs78481580 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 342.000000,4666.000000, 0.068291,0.931709, maf-5-some-pop,maf-5-all-pops 594 chr1 1223569 1223570 rs114486503 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop,maf-5-all-pops 594 chr1 1223571 1223572 rs114699488 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 594 chr1 1223583 1223584 rs372889508 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 206.000000,4802.000000, 0.041134,0.958866, 594 chr1 1223607 1223608 rs532469927 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 947.000000,4061.000000, 0.189097,0.810903, 594 chr1 1223937 1223938 rs556622617 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 109.000000,4899.000000, 0.021765,0.978235, 594 chr1 1224788 1224789 rs560192666 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 107.000000,4901.000000, 0.021366,0.978634, 594 chr1 1224801 1224802 rs532405930 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, 594 chr1 1225115 1225116 rs546071166 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 594 chr1 1225167 1225168 rs562688954 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 594 chr1 1225168 1225169 rs531512382 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 594 chr1 1225216 1225217 rs548120285 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4693.000000,315.000000, 0.937101,0.062899, 594 chr1 1225247 1225248 rs547342220 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 217.000000,4791.000000, 0.043331,0.956669, 594 chr1 1225265 1225266 rs202240236 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 424.000000,4584.000000, 0.084665,0.915335, 594 chr1 1225267 1225268 rs536010590 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 594 chr1 1225321 1225322 rs58752875 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,HGSV, 2 C,T, 439.000000,4569.000000, 0.087660,0.912340, 594 chr1 1225424 1225425 rs58611942 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 3527.000000,1481.000000, 0.704273,0.295727, 594 chr1 1225430 1225431 rs547480775 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 594 chr1 1225431 1225432 rs564266723 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 594 chr1 1225483 1225484 rs58362053 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 431.000000,4577.000000, 0.086062,0.913938, 594 chr1 1225511 1225512 rs535283541 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4947.000000,61.000000, 0.987819,0.012180, 594 chr1 1225552 1225553 rs5026410 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ABI,HGSV, 2 C,T, 2970.000000,2038.000000, 0.593051,0.406949, 594 chr1 1225558 1225559 rs539385886 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 594 chr1 1225559 1225560 rs555910736 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 594 chr1 1225562 1225562 rs541173872 0 + - - -/CC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,CC, 4908.000000,100.000000, 0.980032,0.019968, 594 chr1 1225565 1225566 rs370603882 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1225570 1225571 rs1977346 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,SSMP,TSC-CSHL, 2 C,T, 3928.000000,1080.000000, 0.784345,0.215655, 594 chr1 1225575 1225576 rs1977347 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TSC-CSHL, 2 C,T, 542.000000,4466.000000, 0.108227,0.891773, 594 chr1 1225580 1225580 rs369813446 0 + - - -/CC genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,CC, 4941.000000,67.000000, 0.986621,0.013379, 594 chr1 1225611 1225612 rs1570866 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TSC-CSHL, 2 A,G, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop,maf-5-all-pops 594 chr1 1225640 1225641 rs2748384 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSMP, 2 A,C, 2458.000000,2550.000000, 0.490815,0.509185, maf-5-some-pop,maf-5-all-pops 594 chr1 1225823 1225824 rs115732504 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 594 chr1 1225944 1225945 rs79772714 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,G, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop,maf-5-all-pops 594 chr1 1225958 1225959 rs1570867 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,IMCJ-GDT,NHLBI-ESP,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 2160.000000,2848.000000, 0.431310,0.568690, maf-5-some-pop,maf-5-all-pops 594 chr1 1226062 1226063 rs13306651 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 10 1000GENOMES,CLINSEQ_SNP,CORNELL,EVA-GONL,EXOME_CHIP,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop 594 chr1 1226101 1226102 rs2273274 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA-UK,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1314.000000,3694.000000, 0.262380,0.737620, maf-5-some-pop 594 chr1 1226230 1226231 rs13306638 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 356.000000,4652.000000, 0.071086,0.928914, maf-5-some-pop 594 chr1 1226232 1226233 rs113099499 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop,maf-5-all-pops 594 chr1 1226266 1226267 rs13306640 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop,maf-5-all-pops 594 chr1 1226291 1226292 rs2273276 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 16 1000GENOMES,ABI,BGI,CLINSEQ_SNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop 594 chr1 1226349 1226350 rs114416421 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4830.000000,178.000000, 0.964457,0.035543, 594 chr1 1226422 1226423 rs12743218 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CLINSEQ_SNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,NHLBI-ESP,SI_EXO,SSAHASNP, 2 C,T, 64.000000,4944.000000, 0.012780,0.987220, 594 chr1 1226650 1226651 rs2229833 0 + G G C/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 7 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,WICVAR, 2 C,G, 91.000000,4917.000000, 0.018171,0.981829, 594 chr1 1226756 1226757 rs6690013 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 16 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 549.000000,4459.000000, 0.109625,0.890375, maf-5-some-pop 594 chr1 1226850 1226851 rs61730205 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 7 1000GENOMES,BUSHMAN,CORNELL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 594 chr1 1226888 1226889 rs609805 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF,WICVAR, 2 A,G, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop 594 chr1 1227111 1227112 rs140043159 0 + G G -/G genomic deletion unknown 0 0 ncRNA,untranslated-3 exact 1 4 1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB, 2 -,G, 170.000000,4838.000000, 0.033946,0.966054, 594 chr1 1227181 1227182 rs13306642 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 4 1000GENOMES,IMCJ-GDT,JMKIDD_LAB,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 594 chr1 1227243 1227244 rs2239609 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 9 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 650.000000,4358.000000, 0.129792,0.870208, maf-5-some-pop 594 chr1 1227248 1227249 rs621668 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 575.000000,4433.000000, 0.114816,0.885184, maf-5-some-pop 594 chr1 1227411 1227412 rs112571439 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 594 chr1 1227846 1227847 rs114963616 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 594 chr1 1228325 1228326 rs72896218 0 + A A A/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,T, 4899.000000,109.000000, 0.978235,0.021765, 594 chr1 1228796 1228797 rs79565498 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 594 chr1 1229113 1229114 rs2281459 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,COMPLETE_GENOMICS,GMI,NHLBI-ESP,SSMP,YUSUKE, 2 A,C, 1106.000000,3902.000000, 0.220847,0.779153, 594 chr1 1229355 1229356 rs200974083 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 594 chr1 1229372 1229373 rs544372915 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 594 chr1 1229382 1229383 rs143737257 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,WARNICH_LAB, 2 A,G, 276.000000,4732.000000, 0.055112,0.944888, 594 chr1 1229679 1229680 rs2477781 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, 594 chr1 1229769 1229770 rs6669227 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP, 2 C,T, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop 594 chr1 1230029 1230030 rs146086079 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 594 chr1 1230418 1230419 rs1272959 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2488.000000,2520.000000, 0.496805,0.503195, maf-5-some-pop,maf-5-all-pops 594 chr1 1230439 1230440 rs12041067 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop,maf-5-all-pops 594 chr1 1231000 1231001 rs74810910 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 594 chr1 1231333 1231334 rs74045416 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 594 chr1 1231506 1231507 rs619608 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KWOK,NHLBI-ESP,SC_JCM,SC_SNP,SSMP, 2 A,G, 599.000000,4409.000000, 0.119609,0.880391, maf-5-some-pop 594 chr1 1231586 1231587 rs139600717 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,NHLBI-ESP, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 594 chr1 1231743 1231744 rs113414019 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop,maf-5-all-pops 594 chr1 1231782 1231783 rs115482194 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop,maf-5-all-pops 594 chr1 1232174 1232175 rs376577103 0 + C C -/C genomic deletion unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,C, 232.000000,4776.000000, 0.046326,0.953674, 594 chr1 1232195 1232203 rs148690159 0 + CGCACACG CGCACACG -/CGCACACG genomic deletion unknown 0 0 intron,near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,CGCACACG, 1116.000000,3892.000000, 0.222843,0.777157, 594 chr1 1232206 1232206 rs557094073 0 + - - -/GT genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,GT, 4953.000000,55.000000, 0.989018,0.010982, 594 chr1 1232228 1232229 rs116263241 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4934.000000,74.000000, 0.985224,0.014776, 594 chr1 1232232 1232233 rs115237750 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 594 chr1 1232318 1232319 rs604618 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP, 2 A,G, 1363.000000,3645.000000, 0.272165,0.727835, maf-5-some-pop 594 chr1 1232431 1232433 rs59656555 0 + CA CA -/CA genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,HGSV,LUNTER,TISHKOFF, 2 -,CA, 470.000000,4538.000000, 0.093850,0.906150, 594 chr1 1232484 1232485 rs532722806 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4918.000000,90.000000, 0.982029,0.017971, 594 chr1 1232485 1232486 rs549367232 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 4924.000000,84.000000, 0.983227,0.016773, 594 chr1 1232502 1232503 rs115102198 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, 594 chr1 1232547 1232548 rs142090261 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4329.000000,679.000000, 0.864417,0.135583, 594 chr1 1232592 1232593 rs56153290 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,HGSV, 2 A,G, 660.000000,4348.000000, 0.131789,0.868211, 594 chr1 1232754 1232756 rs537348398 0 + GT GT -/GT genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,GT, 498.000000,4510.000000, 0.099441,0.900559, 594 chr1 1232792 1232793 rs1262914 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KWOK,PJP,SSMP, 2 A,G, 3396.000000,1612.000000, 0.678115,0.321885, 594 chr1 1232818 1232819 rs545203635 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 614.000000,4394.000000, 0.122604,0.877396, 594 chr1 1232860 1232861 rs532883461 0 + T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,T, 110.000000,4898.000000, 0.021965,0.978035, 594 chr1 1232861 1232862 rs543149916 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, 594 chr1 1232887 1232888 rs563273462 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4567.000000,441.000000, 0.911941,0.088059, 594 chr1 1232902 1232903 rs565845325 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4669.000000,339.000000, 0.932308,0.067692, 594 chr1 1232907 1232908 rs571734827 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4669.000000,339.000000, 0.932308,0.067692, 594 chr1 1232982 1232983 rs11260581 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,CSHL-HAPMAP,ENSEMBL,SC_SNP, 2 A,G, 612.000000,4396.000000, 0.122204,0.877796, 594 chr1 1232983 1232984 rs11260582 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,CSHL-HAPMAP,ENSEMBL,SC_SNP, 2 G,T, 612.000000,4396.000000, 0.122204,0.877796, 594 chr1 1232994 1232995 rs11260583 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,SC_SNP,SSMP, 2 A,C, 3946.000000,1062.000000, 0.787939,0.212061, 594 chr1 1232999 1233000 rs536288291 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, 594 chr1 1233044 1233045 rs183831509 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 322.000000,4686.000000, 0.064297,0.935703, 594 chr1 1233064 1233065 rs188376002 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 313.000000,4695.000000, 0.062500,0.937500, 594 chr1 1233072 1233072 rs577149278 0 + - - -/AT genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,AT, 3391.000000,1617.000000, 0.677117,0.322883, 594 chr1 1233084 1233085 rs6679281 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL, 2 A,T, 3017.000000,1991.000000, 0.602436,0.397564, 594 chr1 1233085 1233086 rs6674303 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL, 2 C,T, 3000.000000,2008.000000, 0.599042,0.400958, 594 chr1 1233112 1233114 rs371673082 0 + GT GT -/GT genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,SSIP,SSMP, 2 -,GT, 595.000000,4413.000000, 0.118810,0.881190, 594 chr1 1233126 1233127 rs141337505 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4439.000000,569.000000, 0.886382,0.113618, 594 chr1 1233131 1233132 rs188547671 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4439.000000,569.000000, 0.886382,0.113618, 594 chr1 1233331 1233332 rs111910661 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,NHLBI-ESP,SSMP, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 594 chr1 1233940 1233941 rs1739855 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2488.000000,2520.000000, 0.496805,0.503195, maf-5-some-pop,maf-5-all-pops 594 chr1 1234168 1234169 rs112792787 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 594 chr1 1234553 1234554 rs116119245 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,C, 4930.000000,78.000000, 0.984425,0.015575, 594 chr1 1234590 1234591 rs113260116 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop,maf-5-all-pops 594 chr1 1234762 1234763 rs143128930 0 + G G -/G genomic deletion unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,EVA-GONL,LUNTER,PJP,SSMP,TISHKOFF,WARNICH_LAB, 2 -,G, 598.000000,4410.000000, 0.119409,0.880591, 594 chr1 1234954 1234955 rs41306990 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SI_EXO, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 594 chr1 1235709 1235710 rs640712 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 2503.000000,2505.000000, 0.499800,0.500200, maf-5-some-pop 594 chr1 1235791 1235792 rs61559999 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4803.000000,205.000000, 0.959065,0.040934, maf-5-some-pop,maf-5-all-pops 594 chr1 1235844 1235845 rs60785581 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop 594 chr1 1236855 1236856 rs115765949 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 594 chr1 1237035 1237036 rs2477782 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2506.000000,2502.000000, 0.500399,0.499601, maf-5-some-pop 594 chr1 1237493 1237494 rs114814219 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 594 chr1 1237688 1237694 rs113880200 0 + GAGCCG GAGCCG -/GAGCCG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,GAGCCG, 124.000000,4884.000000, 0.024760,0.975240, 594 chr1 1237828 1237829 rs11586188 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop 594 chr1 1238215 1238216 rs74045417 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,C, 77.000000,4931.000000, 0.015375,0.984625, 594 chr1 1238491 1238492 rs12408158 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF, 2 A,G, 807.000000,4201.000000, 0.161142,0.838858, maf-5-some-pop,maf-5-all-pops 594 chr1 1238582 1238583 rs145087137 0 + G G A/G genomic single unknown 0 0 missense exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 594 chr1 1239055 1239055 rs146185859 0 + - - -/CCT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,CCT, 656.000000,4352.000000, 0.130990,0.869010, 594 chr1 1239076 1239077 rs114969353 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 594 chr1 1239338 1239339 rs11260584 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3602.000000,1406.000000, 0.719249,0.280751, maf-5-some-pop 594 chr1 1239707 1239708 rs115928552 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4932.000000,76.000000, 0.984824,0.015176, 594 chr1 1239796 1239797 rs74564044 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 594 chr1 1239934 1239935 rs12410087 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4206.000000,802.000000, 0.839856,0.160144, maf-5-some-pop 594 chr1 1239952 1239953 rs10399878 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 597.000000,4411.000000, 0.119209,0.880791, maf-5-some-pop 594 chr1 1240191 1240192 rs138176063 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 594 chr1 1240236 1240237 rs12409587 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop,maf-5-all-pops 594 chr1 1240458 1240459 rs56653467 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 594 chr1 1241022 1241023 rs1536167 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 3880.000000,1128.000000, 0.774760,0.225240, maf-5-some-pop 594 chr1 1241279 1241280 rs115282354 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop,maf-5-all-pops 594 chr1 1241528 1241529 rs1536168 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop 594 chr1 1241562 1241563 rs74045418 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4554.000000,454.000000, 0.909345,0.090655, maf-5-some-pop,maf-5-all-pops 594 chr1 1241721 1241724 rs144494080 0 + AGA AGA -/AGA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,AGA, 214.000000,4794.000000, 0.042732,0.957268, 594 chr1 1241745 1241746 rs77293210 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop 594 chr1 1241834 1241835 rs11810839 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA-UK, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 594 chr1 1241902 1241903 rs3737719 0 - C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 594 chr1 1242214 1242215 rs4970431 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop 594 chr1 1242287 1242288 rs115464315 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 88.000000,4920.000000, 0.017572,0.982428, 594 chr1 1242311 1242312 rs114967114 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 63.000000,4945.000000, 0.012580,0.987420, 594 chr1 1243031 1243032 rs79254519 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,ENSEMBL,EVA-GONL, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1243558 1243569 rs139775692 0 + GGGCGCGGGGA GGGCGCGGGGA -/GGGCGCGGGGA genomic deletion unknown 0 0 near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,GGGCGCGGGGA, 1939.000000,3069.000000, 0.387181,0.612819, 594 chr1 1243663 1243664 rs140656780 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 594 chr1 1243895 1243896 rs61766198 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 C,T, 3453.000000,1555.000000, 0.689497,0.310503, maf-5-some-pop,maf-5-all-pops 594 chr1 1244454 1244455 rs113647073 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4858.000000,150.000000, 0.970048,0.029952, 594 chr1 1244637 1244638 rs12094447 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA,missense exact 1 9 1000GENOMES,APPLERA_GI,BUSHMAN,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SC_SNP,SEATTLESEQ,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop 594 chr1 1245367 1245368 rs11590283 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1553.000000,3455.000000, 0.310104,0.689896, maf-5-some-pop 594 chr1 1245371 1245372 rs74340666 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 594 chr1 1245487 1245488 rs555204352 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSIP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 594 chr1 1246290 1246293 rs149584797 0 + ACG ACG -/ACG genomic deletion unknown 0 0 near-gene-3,cds-indel range 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,ACG, 136.000000,4872.000000, 0.027157,0.972844, 594 chr1 1246302 1246303 rs41285824 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-3,ncRNA exact 1 6 1000GENOMES,CLINSEQ_SNP,CORNELL,EVA-GONL,NHLBI-ESP,SI_EXO, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 594 chr1 1246437 1246438 rs115163464 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-3,ncRNA exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 594 chr1 1246483 1246484 rs112356049 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 594 chr1 1246486 1246487 rs78028248 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 594 chr1 1247092 1247093 rs77183802 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3,ncRNA,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,maf-5-all-pops 594 chr1 1247185 1247186 rs142783360 0 + G G -/G genomic deletion unknown 0 0 intron,near-gene-3,ncRNA,untranslated-3 exact 1 4 1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB, 2 -,G, 215.000000,4793.000000, 0.042931,0.957069, 594 chr1 1247493 1247494 rs12103 0 + T T C/T genomic single unknown 0 0 coding-synon,intron,near-gene-3,ncRNA exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BL,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,SEATTLESEQ,SEQUENOM,SSMP, 2 C,T, 1599.000000,3409.000000, 0.319289,0.680711, maf-5-some-pop,microattr-tpa 594 chr1 1247554 1247555 rs113412865 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop,maf-5-all-pops 594 chr1 1247587 1247588 rs568445177 0 + G G G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 G,T, 4935.000000,73.000000, 0.985423,0.014577, 594 chr1 1248585 1248586 rs74045438 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, 594 chr1 1249186 1249187 rs12142199 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-5,ncRNA exact 1 24 1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1553.000000,3455.000000, 0.310104,0.689896, maf-5-some-pop 594 chr1 1250317 1250318 rs12095333 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 10 1000GENOMES,BUSHMAN,CORNELL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SEATTLESEQ,TISHKOFF, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 594 chr1 1251208 1251209 rs529698451 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, 594 chr1 1251231 1251232 rs75731392 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop,maf-5-all-pops 594 chr1 1251322 1251323 rs112466538 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 594 chr1 1251387 1251388 rs112689067 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 594 chr1 1251421 1251422 rs77997846 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 594 chr1 1252260 1252261 rs183278404 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 594 chr1 1252308 1252309 rs35031478 0 - A A A/T genomic single unknown 0 0 intron,ncRNA exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 594 chr1 1252399 1252400 rs55998830 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 594 chr1 1252495 1252496 rs9658804 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,maf-5-all-pops 594 chr1 1252657 1252658 rs9659696 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, 594 chr1 1253898 1253899 rs78420767 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop,maf-5-all-pops 594 chr1 1254068 1254069 rs76511663 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 4694.000000,314.000000, 0.937300,0.062700, maf-5-some-pop,maf-5-all-pops 594 chr1 1254135 1254136 rs4970432 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3602.000000,1406.000000, 0.719249,0.280751, maf-5-some-pop,maf-5-all-pops 594 chr1 1254170 1254171 rs76855900 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 594 chr1 1254502 1254503 rs200347460 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,CLINSEQ_SNP, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 594 chr1 1254840 1254841 rs10907179 0 - C C C/G genomic single unknown 0 0 coding-synon,intron exact 1 26 1000GENOMES,APPLERA_GI,BCMHGSC_JDW,BGI,BL,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 594 chr1 1255027 1255028 rs112653110 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 594 chr1 1255129 1255130 rs10449893 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 461.000000,4547.000000, 0.092053,0.907947, maf-5-some-pop 594 chr1 1255250 1255251 rs115771716 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 88.000000,4920.000000, 0.017572,0.982428, 594 chr1 1255286 1255287 rs10449892 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop 594 chr1 1255436 1255437 rs77433625 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,maf-5-all-pops 594 chr1 1256032 1256033 rs11801967 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4561.000000,447.000000, 0.910743,0.089257, maf-5-some-pop 594 chr1 1256249 1256250 rs76181513 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop,maf-5-all-pops 594 chr1 1256607 1256608 rs76947392 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 594 chr1 1256956 1256957 rs111387554 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 594 chr1 1257592 1257593 rs1810745 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 655.000000,4353.000000, 0.130791,0.869209, maf-5-some-pop 594 chr1 1257806 1257807 rs74045442 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,C, 133.000000,4875.000000, 0.026557,0.973442, 594 chr1 1258245 1258246 rs3845293 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 1417.000000,3591.000000, 0.282947,0.717053, maf-5-some-pop,maf-5-all-pops 594 chr1 1258258 1258259 rs557712856 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSIP, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 594 chr1 1258526 1258527 rs140361978 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 594 chr1 1258720 1258721 rs143494780 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1258732 1258733 rs148017626 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1259233 1259233 rs201255802 0 + - - -/A genomic insertion unknown 0 0 intron,near-gene-5 between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 4713.000000,295.000000, 0.941094,0.058906, 594 chr1 1259481 1259482 rs552994570 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, 594 chr1 1259513 1259514 rs573449235 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 594 chr1 1259560 1259561 rs189752537 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 1658.000000,3350.000000, 0.331070,0.668930, 594 chr1 1259599 1259600 rs143327728 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 4794.000000,214.000000, 0.957268,0.042732, 594 chr1 1259946 1259947 rs373639298 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,C, 83.000000,4925.000000, 0.016573,0.983427, 594 chr1 1260152 1260153 rs183819474 0 + G G G/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 1 1000GENOMES, 2 G,T, 4944.000000,64.000000, 0.987220,0.012780, 594 chr1 1260167 1260168 rs61766199 0 + C C A/C genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 A,C, 3550.000000,1458.000000, 0.708866,0.291134, 594 chr1 1260461 1260462 rs144022893 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4859.000000,149.000000, 0.970248,0.029752, 594 chr1 1260732 1260733 rs307346 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 658.000000,4350.000000, 0.131390,0.868610, maf-5-some-pop,maf-5-all-pops 594 chr1 1261079 1261080 rs3845294 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,ABI,JMKIDD_LAB,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 201.000000,4807.000000, 0.040136,0.959864, 594 chr1 1261090 1261091 rs111976402 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, 594 chr1 1261132 1261133 rs3813208 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 G,T, 4269.000000,739.000000, 0.852436,0.147564, 594 chr1 1261346 1261347 rs182701918 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1261823 1261824 rs307348 0 - G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1262275 1262276 rs113667133 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 594 chr1 1263361 1263362 rs4970433 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3579.000000,1429.000000, 0.714657,0.285343, 594 chr1 1263450 1263451 rs139510351 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4791.000000,217.000000, 0.956669,0.043331, 594 chr1 1264135 1264136 rs307352 0 - A A A/C/G/T genomic single unknown 0 0 untranslated-3 exact 1 SingleClassQuadAllelic 8 1000GENOMES,BUSHMAN,ENSEMBL,JMKIDD_LAB,KWOK,MGC_GENOME_DIFF,SC_JCM,TISHKOFF, 4 A,C,G,T, 4784.000000,224.000000,224.000000,4784.000000, 0.477636,0.022364,0.022364,0.477636, 594 chr1 1264333 1264334 rs141109567 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WARNICH_LAB, 2 C,T, 4750.000000,258.000000, 0.948482,0.051518, 594 chr1 1264538 1264539 rs307354 0 - G G C/G genomic single unknown 0 0 near-gene-3 exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 594 chr1 1264571 1264571 rs202021159 0 + - - -/GGAGGAC genomic insertion unknown 0 0 near-gene-3 between 1 1 1000GENOMES, 2 -,GGAGGAC, 4875.000000,133.000000, 0.973442,0.026557, 594 chr1 1264732 1264733 rs3933040 0 - C C C/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1265050 1265051 rs113714998 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, 594 chr1 1265126 1265127 rs112425550 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, 594 chr1 1265153 1265154 rs307355 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3824.000000,1184.000000, 0.763578,0.236422, clinically-assoc,has-omim-omia 594 chr1 1265447 1265448 rs112853762 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, 594 chr1 1266424 1266425 rs138272841 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 434.000000,4574.000000, 0.086661,0.913339, 594 chr1 1266475 1266476 rs3855954 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop 594 chr1 1266504 1266505 rs113667724 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,SSMP, 2 G,T, 4859.000000,149.000000, 0.970248,0.029752, 594 chr1 1266737 1266738 rs76755863 0 + G G A/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,CESG,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,MPI_MOLGEN,NHLBI-ESP,RWHITE, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 594 chr1 1266739 1266740 rs141430443 0 + T T A/T genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,MPI_MOLGEN,NHLBI-ESP,WARNICH_LAB, 2 A,T, 95.000000,4913.000000, 0.018970,0.981030, 594 chr1 1267045 1267046 rs78847442 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 594 chr1 1267325 1267325 rs200330269 0 + - - -/C genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,LUNTER,SSMP,WARNICH_LAB, 2 -,C, 4059.000000,949.000000, 0.810503,0.189497, 594 chr1 1267650 1267651 rs111615792 0 + G G A/G genomic single unknown 0 0 missense exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 335.000000,4673.000000, 0.066893,0.933107, maf-5-some-pop,maf-5-all-pops 594 chr1 1268009 1268010 rs147600530 0 + G G G/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EVA-GONL,EXOME_CHIP,NHLBI-ESP, 2 G,T, 4929.000000,79.000000, 0.984225,0.015775, 594 chr1 1268158 1268159 rs3813210 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 11 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4304.000000,704.000000, 0.859425,0.140575, maf-5-some-pop 594 chr1 1268194 1268195 rs3813211 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 684.000000,4324.000000, 0.136581,0.863419, 594 chr1 1268347 1268348 rs111703380 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,RWHITE,TISHKOFF, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, 594 chr1 1268549 1268550 rs61766206 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 594 chr1 1268846 1268847 rs307378 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop 594 chr1 1269003 1269004 rs140035477 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,RWHITE, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 594 chr1 1269075 1269076 rs148260692 0 + A A A/C genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 A,C, 4922.000000,86.000000, 0.982827,0.017173, 594 chr1 1269487 1269488 rs112507608 0 + G G A/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,RWHITE,TISHKOFF, 2 A,G, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop,maf-5-all-pops 594 chr1 1269553 1269554 rs307377 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CESG,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4767.000000,241.000000, 0.951877,0.048123, maf-5-some-pop 594 chr1 1269887 1269888 rs139522421 0 + C C A/C genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 A,C, 82.000000,4926.000000, 0.016374,0.983626, 594 chr1 1269920 1269921 rs307375 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF, 2 C,T, 4776.000000,232.000000, 0.953674,0.046326, 594 chr1 1270048 1270049 rs113534227 0 + T T G/T genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 149.000000,4859.000000, 0.029752,0.970248, 594 chr1 1270131 1270132 rs72634803 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 594 chr1 1270328 1270329 rs188647 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, 594 chr1 1270358 1270359 rs307374 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4766.000000,242.000000, 0.951677,0.048323, 594 chr1 1270452 1270453 rs11488701 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4563.000000,445.000000, 0.911142,0.088858, 594 chr1 1270481 1270482 rs377021118 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,SSMP, 2 C,T, 84.000000,4924.000000, 0.016773,0.983227, 594 chr1 1270894 1270895 rs61735961 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,APPLERA_GI,BUSHMAN,CORNELL,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop,maf-5-all-pops 594 chr1 1271138 1271139 rs111452125 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 594 chr1 1271174 1271175 rs307373 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, 594 chr1 1271941 1271942 rs111315662 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4419.000000,589.000000, 0.882388,0.117612, 594 chr1 1272044 1272045 rs142868903 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 594 chr1 1272227 1272228 rs142333038 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 594 chr1 1272635 1272636 rs138177008 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,TISHKOFF,WARNICH_LAB, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, 594 chr1 1274241 1274242 rs307369 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, 594 chr1 1274349 1274350 rs307368 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 881.000000,4127.000000, 0.175919,0.824081, maf-5-some-pop 594 chr1 1274540 1274541 rs307367 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 7 1000GENOMES,BUSHMAN,ENSEMBL,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, 594 chr1 1275199 1275200 rs201165686 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,CLINSEQ_SNP,JMKIDD_LAB, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 594 chr1 1275715 1275716 rs112871502 0 + T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,T, 445.000000,4563.000000, 0.088858,0.911142, 594 chr1 1275955 1275956 rs111883533 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4369.000000,639.000000, 0.872404,0.127596, 594 chr1 1276126 1276126 rs199520509 0 + - - -/CA genomic insertion unknown 0 0 intron,near-gene-5 between 1 4 1000GENOMES,EVA-GONL,GMI,TISHKOFF, 2 -,CA, 4564.000000,444.000000, 0.911342,0.088658, 594 chr1 1276191 1276203 rs200862897 0 + CACACACCTGCA CACACACCTGCA -/CACACACCTGCA genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CACACACCTGCA, 337.000000,4671.000000, 0.067292,0.932708, 594 chr1 1276219 1276221 rs202012797 0 + CG CG -/CG genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,CG, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1276235 1276236 rs371269276 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 74.000000,4934.000000, 0.014776,0.985224, 594 chr1 1276362 1276363 rs140964625 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 444.000000,4564.000000, 0.088658,0.911342, 594 chr1 1276424 1276425 rs149987725 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 137.000000,4871.000000, 0.027356,0.972644, 594 chr1 1276458 1276459 rs307365 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 A,C, 4123.000000,885.000000, 0.823283,0.176717, 594 chr1 1276477 1276478 rs307364 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 G,T, 4125.000000,883.000000, 0.823682,0.176318, 594 chr1 1276497 1276498 rs138615630 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 594 chr1 1276625 1276626 rs113665540 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, 594 chr1 1276701 1276702 rs111203438 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, 594 chr1 1276742 1276744 rs200805477 0 + AC AC -/AC genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 -,AC, 639.000000,4369.000000, 0.127596,0.872404, 594 chr1 1276811 1276812 rs307363 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4766.000000,242.000000, 0.951677,0.048323, 594 chr1 1276920 1276922 rs201306306 0 + CA CA -/CA genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,TISHKOFF,WARNICH_LAB, 2 -,CA, 257.000000,4751.000000, 0.051318,0.948682, 594 chr1 1276930 1276932 rs75244934 0 + CA CA -/CA genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,CA, 1886.000000,3122.000000, 0.376597,0.623403, 594 chr1 1276938 1276939 rs376494450 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,GMI, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 594 chr1 1276972 1276973 rs188969152 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,MPI_MOLGEN, 2 C,G, 661.000000,4347.000000, 0.131989,0.868011, 594 chr1 1276973 1276973 rs145370195 0 + - - -/ACAC genomic insertion unknown 0 0 intron,near-gene-5 between 1 3 1000GENOMES,BILGI_BIOE,BL, 2 -,ACAC, 1267.000000,3741.000000, 0.252995,0.747005, 594 chr1 1277182 1277183 rs61735963 0 + C C C/T genomic single unknown 0 0 missense exact 1 8 1000GENOMES,BUSHMAN,CORNELL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,PJP,TISHKOFF, 2 C,T, 4679.000000,329.000000, 0.934305,0.065695, maf-5-some-pop,maf-5-all-pops 594 chr1 1277595 1277596 rs182531 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF, 2 C,T, 4756.000000,252.000000, 0.949681,0.050320, maf-5-some-pop,maf-5-all-pops 594 chr1 1277648 1277649 rs146525333 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WARNICH_LAB, 2 G,T, 4566.000000,442.000000, 0.911741,0.088259, 594 chr1 1277734 1277735 rs140992194 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 594 chr1 1278236 1278237 rs307361 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4766.000000,242.000000, 0.951677,0.048323, 594 chr1 1278252 1278253 rs111609577 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 C,T, 4713.000000,295.000000, 0.941094,0.058906, 594 chr1 1278637 1278639 rs141336862 0 + CC CC -/CC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BL,PJP,SSMP, 2 -,CC, 4816.000000,192.000000, 0.961661,0.038339, 594 chr1 1278644 1278645 rs554318700 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 119.000000,4889.000000, 0.023762,0.976238, 594 chr1 1278646 1278647 rs574483420 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 445.000000,4563.000000, 0.088858,0.911142, 594 chr1 1278752 1278753 rs113190394 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4711.000000,297.000000, 0.940695,0.059305, 594 chr1 1280013 1280014 rs307359 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 875.000000,4133.000000, 0.174720,0.825280, maf-5-some-pop,maf-5-all-pops 594 chr1 1280140 1280141 rs112545589 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, 594 chr1 1280491 1280492 rs113543280 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4379.000000,629.000000, 0.874401,0.125599, 594 chr1 1280802 1280803 rs141929348 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, 594 chr1 1280807 1280808 rs71628954 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 594 chr1 1281344 1281345 rs307357 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 871.000000,4137.000000, 0.173922,0.826078, 594 chr1 1281444 1281445 rs113475223 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, 594 chr1 1281692 1281693 rs150214790 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 73.000000,4935.000000, 0.014577,0.985423, 594 chr1 1281832 1281833 rs113231348 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4379.000000,629.000000, 0.874401,0.125599, 594 chr1 1281838 1281839 rs112495999 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, 594 chr1 1282971 1282972 rs150476868 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WARNICH_LAB, 2 G,T, 4877.000000,131.000000, 0.973842,0.026158, 594 chr1 1283808 1283809 rs542715971 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,C, 67.000000,4941.000000, 0.013379,0.986621, 594 chr1 1283853 1283854 rs116297005 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 594 chr1 1284489 1284490 rs150789461 0 + G G A/G genomic single unknown 0 0 near-gene-3,untranslated-5 exact 1 5 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP,WARNICH_LAB, 2 A,G, 3821.000000,1187.000000, 0.762979,0.237021, 594 chr1 1284939 1284940 rs76261644 0 + A A A/C genomic single unknown 0 0 near-gene-5,missense exact 1 2 1000GENOMES,ENSEMBL, 2 A,C, 0.000000,5008.000000, 0.000000,1.000000, 594 chr1 1285135 1285136 rs184276234 0 + C C C/T genomic single unknown 0 0 near-gene-5,missense exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1285357 1285358 rs11587525 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,SSMP, 2 A,G, 242.000000,4766.000000, 0.048323,0.951677, 594 chr1 1286785 1286786 rs113488343 0 + A A A/T genomic single unknown 0 0 missense exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 A,T, 4378.000000,630.000000, 0.874201,0.125799, 594 chr1 1286803 1286806 rs547089985 0 + GAG GAG -/GAG genomic deletion unknown 0 0 cds-indel range 1 2 1000GENOMES,SSIP, 2 -,GAG, 563.000000,4445.000000, 0.112420,0.887580, 594 chr1 1286820 1286821 rs61766214 0 + G G C/G genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI, 2 C,G, 4134.000000,874.000000, 0.825479,0.174521, 594 chr1 1286896 1286897 rs34380086 0 - G G C/G genomic single unknown 0 0 missense exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 594 chr1 1286966 1286967 rs307379 0 + A A A/G genomic single unknown 0 0 untranslated-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 594 chr1 1287249 1287250 rs147805614 0 + C C C/G genomic single unknown 0 0 untranslated-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 594 chr1 1287254 1287255 rs139437599 0 + C C A/C genomic single unknown 0 0 untranslated-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 210.000000,4798.000000, 0.041933,0.958067, 594 chr1 1287398 1287399 rs151108896 0 + T T A/T genomic single unknown 0 0 untranslated-5 exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WARNICH_LAB, 2 A,T, 216.000000,4792.000000, 0.043131,0.956869, 594 chr1 1287448 1287449 rs307381 0 - T T A/T genomic single unknown 0 0 untranslated-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1287482 1287483 rs112093510 0 + A A A/C genomic single unknown 0 0 untranslated-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 4703.000000,305.000000, 0.939097,0.060903, 594 chr1 1287561 1287562 rs111856013 0 + G G A/G genomic single unknown 0 0 untranslated-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, 594 chr1 1288297 1288298 rs142824999 0 + G G A/G genomic single unknown 0 0 untranslated-3,untranslated-5 exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 594 chr1 1288423 1288424 rs112179552 0 + C C C/T genomic single unknown 0 0 untranslated-3,untranslated-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4713.000000,295.000000, 0.941094,0.058906, 594 chr1 1288685 1288685 rs566511825 0 + - - -/C genomic insertion unknown 0 0 near-gene-5,frameshift,untranslated-3 between 1 1 1000GENOMES, 2 -,C, 4917.000000,91.000000, 0.981829,0.018171, 594 chr1 1288837 1288838 rs111489086 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, 594 chr1 1288925 1288926 rs148936718 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, 594 chr1 1289873 1289874 rs61730211 0 + C C A/C genomic single unknown 0.046485 0.145196 near-gene-5,missense exact 1 1 CORNELL, 2 A,C, 1.000000,41.000000, 0.023810,0.976190, 594 chr1 1289910 1289911 rs4970365 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,WI_SSAHASNP, 2 A,G, 4149.000000,859.000000, 0.828474,0.171526, 594 chr1 1290407 1290408 rs147996767 0 + A A A/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 4647.000000,361.000000, 0.927915,0.072085, 594 chr1 1290580 1290581 rs189632301 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,WARNICH_LAB, 2 A,G, 362.000000,4646.000000, 0.072284,0.927716, 594 chr1 1290592 1290600 rs578255813 0 + GGGAGCTG GGGAGCTG -/GGGAGCTG genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,GGGAGCTG, 293.000000,4715.000000, 0.058506,0.941494, 594 chr1 1291084 1291085 rs181929025 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 1 1000GENOMES, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, 594 chr1 1291159 1291160 rs201260508 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,SSMP,WARNICH_LAB, 2 -,A, 5008.000000,0.000000, 1.000000,0.000000, 594 chr1 1291506 1291507 rs116792145 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop,maf-5-all-pops 594 chr1 1291707 1291708 rs114444027 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 387.000000,4621.000000, 0.077276,0.922724, maf-5-some-pop,maf-5-all-pops 594 chr1 1292130 1292131 rs141676214 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, 594 chr1 1292386 1292387 rs202220998 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 -,A, 447.000000,4561.000000, 0.089257,0.910743, 594 chr1 1292425 1292426 rs35694341 0 - C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1292625 1292626 rs2649607 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,ENSEMBL,ILLUMINA,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop,maf-5-all-pops 594 chr1 1293342 1293343 rs4970438 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 501.000000,4507.000000, 0.100040,0.899960, 594 chr1 1293763 1293764 rs34841888 0 - G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1294036 1294037 rs138031700 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 594 chr1 1294286 1294287 rs12731385 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3564.000000,1444.000000, 0.711661,0.288339, 594 chr1 1294381 1294382 rs61766232 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 4 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 594 chr1 1294469 1294470 rs141483437 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 G,T, 4939.000000,69.000000, 0.986222,0.013778, 594 chr1 1294927 1294928 rs2649608 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, 594 chr1 1295093 1295103 rs200418481 0 + ACCCCACCCC ACCCCACCCC -/ACCCCACCCC genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,ACCCCACCCC, 292.000000,4716.000000, 0.058307,0.941693, 594 chr1 1295146 1295147 rs74045444 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, 594 chr1 1295882 1295882 rs564906656 0 + - - -/GGGGCGGGC genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,GGGGCGGGC, 868.000000,4140.000000, 0.173323,0.826677, 594 chr1 1295887 1295887 rs533071465 0 + - - -/GGGGGGC genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,GGGGGGC, 868.000000,4140.000000, 0.173323,0.826677, 594 chr1 1295981 1295982 rs145327736 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 594 chr1 1296254 1296255 rs370716566 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4946.000000,62.000000, 0.987620,0.012380, 594 chr1 1296255 1296267 rs560295906 0 + AGACACACATGG AGACACACATGG -/AGACACACATGG genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,AGACACACATGG, 86.000000,4922.000000, 0.017173,0.982827, 594 chr1 1296283 1296285 rs549102424 0 + AC AC -/AC genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,AC, 447.000000,4561.000000, 0.089257,0.910743, 594 chr1 1296363 1296365 rs202221968 0 + AC AC -/AC genomic deletion unknown 0 0 intron,near-gene-5 range 1 2 1000GENOMES,GMI, 2 -,AC, 460.000000,4548.000000, 0.091853,0.908147, 594 chr1 1296395 1296397 rs200946255 0 + AC AC -/AC genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,AC, 69.000000,4939.000000, 0.013778,0.986222, 594 chr1 1296403 1296404 rs111352671 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4833.000000,175.000000, 0.965056,0.034944, 594 chr1 1296433 1296435 rs199723493 0 + AG AG -/AG genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,GMI,SSMP, 2 -,AG, 87.000000,4921.000000, 0.017372,0.982628, 594 chr1 1296610 1296611 rs113035485 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 142.000000,4866.000000, 0.028355,0.971645, 594 chr1 1296690 1296691 rs2765025 0 - C C C/G genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 594 chr1 1296817 1296818 rs2765024 0 - C C C/G genomic single unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1297215 1297216 rs2649611 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,SC_JCM,SSMP,TISHKOFF, 2 A,G, 335.000000,4673.000000, 0.066893,0.933107, maf-5-some-pop,maf-5-all-pops 594 chr1 1297227 1297227 rs199616947 0 + - - -/T genomic insertion unknown 0 0 intron,near-gene-5 between 1 2 1000GENOMES,TISHKOFF, 2 -,T, 4921.000000,87.000000, 0.982628,0.017372, 594 chr1 1297482 1297483 rs144372685 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 594 chr1 1297634 1297635 rs2649612 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4764.000000,244.000000, 0.951278,0.048722, 594 chr1 1297697 1297698 rs112834298 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 594 chr1 1297722 1297723 rs2649613 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, 594 chr1 1297835 1297836 rs113215849 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 594 chr1 1297849 1297850 rs2765020 0 - A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SC_JCM,SSMP,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1297894 1297895 rs112934253 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4619.000000,389.000000, 0.922324,0.077676, 594 chr1 1298168 1298169 rs79141536 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BL,ENSEMBL,GMI,PJP, 2 A,T, 925.000000,4083.000000, 0.184704,0.815296, 594 chr1 1298410 1298411 rs4970439 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 844.000000,4164.000000, 0.168530,0.831470, 594 chr1 1298461 1298462 rs200811419 0 + A A -/A genomic deletion unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 -,A, 724.000000,4284.000000, 0.144569,0.855431, 594 chr1 1298532 1298533 rs4596826 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3632.000000,1376.000000, 0.725240,0.274760, 594 chr1 1298536 1298537 rs2477784 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 843.000000,4165.000000, 0.168331,0.831669, 594 chr1 1298837 1298838 rs113740540 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BL,BUSHMAN,GMI,MPI_MOLGEN, 2 C,G, 1427.000000,3581.000000, 0.284944,0.715056, 594 chr1 1298963 1298964 rs183716005 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 384.000000,4624.000000, 0.076677,0.923323, 594 chr1 1299040 1299041 rs189210276 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 594 chr1 1299105 1299106 rs150088315 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,MPI_MOLGEN, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 594 chr1 1299128 1299129 rs2313197 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 261.000000,4747.000000, 0.052117,0.947883, 594 chr1 1299277 1299278 rs28821228 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2318.000000,2690.000000, 0.462859,0.537141, 594 chr1 1299365 1299366 rs28368296 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 2317.000000,2691.000000, 0.462660,0.537340, 594 chr1 1299484 1299486 rs542433833 0 + TG TG -/TG genomic deletion unknown 0 0 near-gene-5 range 1 1 1000GENOMES, 2 -,TG, 2032.000000,2976.000000, 0.405751,0.594249, 594 chr1 1299570 1299571 rs144026922 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, 594 chr1 1299602 1299603 rs4970440 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 438.000000,4570.000000, 0.087460,0.912540, 594 chr1 1299632 1299633 rs34734423 0 - C C C/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1299712 1299713 rs150822803 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4933.000000,75.000000, 0.985024,0.014976, 594 chr1 1299736 1299737 rs2313198 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2931.000000,2077.000000, 0.585264,0.414736, 594 chr1 1300302 1300303 rs148192735 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4948.000000,60.000000, 0.988019,0.011981, 594 chr1 1300346 1300347 rs140119160 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 4948.000000,60.000000, 0.988019,0.011981, 594 chr1 1300416 1300416 rs561031858 0 + - - -/AA genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,AA, 3642.000000,1366.000000, 0.727236,0.272764, 594 chr1 1300539 1300540 rs28890279 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2931.000000,2077.000000, 0.585264,0.414736, 594 chr1 1300577 1300578 rs28503348 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2931.000000,2077.000000, 0.585264,0.414736, 594 chr1 1300893 1300894 rs2985899 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP, 2 A,C, 4759.000000,249.000000, 0.950280,0.049720, 594 chr1 1300945 1300946 rs2936661 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 2680.000000,2328.000000, 0.535144,0.464856, 594 chr1 1301387 1301388 rs71628956 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 3119.000000,1889.000000, 0.622804,0.377196, 594 chr1 1301412 1301416 rs532006009 0 + TGTG TGTG -/TGTG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TGTG, 420.000000,4588.000000, 0.083866,0.916134, 594 chr1 1301441 1301442 rs76662808 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1884.000000,3124.000000, 0.376198,0.623802, 594 chr1 1301503 1301504 rs111932281 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 4884.000000,124.000000, 0.975240,0.024760, 594 chr1 1301525 1301530 rs201440847 0 + GTGAA GTGAA -/GTGAA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,SSMP, 2 -,GTGAA, 1176.000000,3832.000000, 0.234824,0.765176, 594 chr1 1301563 1301565 rs199546086 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,EVA-GONL, 2 -,GA, 89.000000,4919.000000, 0.017772,0.982228, 594 chr1 1301567 1301567 rs113434969 0 + - - -/GT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 -,GT, 4153.000000,855.000000, 0.829273,0.170727, 594 chr1 1301641 1301642 rs146482883 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4910.000000,98.000000, 0.980431,0.019569, 594 chr1 1301651 1301653 rs569873087 0 + GT GT -/GT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GT, 324.000000,4684.000000, 0.064696,0.935304, 594 chr1 1301679 1301681 rs558620518 0 + GT GT -/GT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GT, 360.000000,4648.000000, 0.071885,0.928115, 594 chr1 1301807 1301823 rs150215528 0 + GTGTGATTGAATGAGT GTGTGATTGAATGAGT -/GTGTGATTGAATGAGT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 -,GTGTGATTGAATGAGT, 2655.000000,2353.000000, 0.530152,0.469848, 594 chr1 1301941 1301943 rs138889336 0 + GT GT -/GT genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,BL,GMI,LUNTER,SSMP, 2 -,GT, 2082.000000,2926.000000, 0.415735,0.584265, 594 chr1 1301980 1301981 rs148814621 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 594 chr1 1302105 1302106 rs72896260 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 G,T, 1778.000000,3230.000000, 0.355032,0.644968, 594 chr1 1302209 1302210 rs75051470 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 963.000000,4045.000000, 0.192292,0.807708, 594 chr1 1302331 1302331 rs372275891 0 + - - -/AT/GT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BILGI_BIOE,TISHKOFF, 3 -,AT,GT, 273.000000,37.000000,4698.000000, 0.054513,0.007388,0.938099, 594 chr1 1302407 1302408 rs61766242 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 301.000000,4707.000000, 0.060104,0.939896, 594 chr1 1302535 1302536 rs201273633 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 3550.000000,1458.000000, 0.708866,0.291134, 594 chr1 1302637 1302638 rs113375648 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI, 2 A,T, 1900.000000,3108.000000, 0.379393,0.620607, 594 chr1 1302648 1302650 rs367838598 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,GA, 1614.000000,3394.000000, 0.322284,0.677716, 594 chr1 1302659 1302660 rs113127973 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,T, 1746.000000,3262.000000, 0.348642,0.651358, 594 chr1 1302678 1302679 rs201602507 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 3308.000000,1700.000000, 0.660543,0.339457, 594 chr1 1302679 1302680 rs202225152 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,T, 1698.000000,3310.000000, 0.339058,0.660942, 594 chr1 1302709 1302709 rs138283838 0 + - - -/GT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,GMI, 2 -,GT, 3296.000000,1712.000000, 0.658147,0.341853, 594 chr1 1302753 1302753 rs78389809 0 + - - -/GTG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,GMI, 2 -,GTG, 3272.000000,1736.000000, 0.653355,0.346645, 594 chr1 1302768 1302768 rs536994186 0 + - - -/TGG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,TGG, 3169.000000,1839.000000, 0.632788,0.367212, 594 chr1 1302841 1302842 rs78275249 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,TISHKOFF, 2 C,T, 2042.000000,2966.000000, 0.407748,0.592252, 594 chr1 1302877 1302878 rs149550876 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 437.000000,4571.000000, 0.087260,0.912740, 594 chr1 1302972 1302973 rs72896264 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,GMI,TISHKOFF, 2 A,G, 2060.000000,2948.000000, 0.411342,0.588658, 594 chr1 1302986 1302987 rs537166609 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 1462.000000,3546.000000, 0.291933,0.708067, 594 chr1 1302994 1302995 rs76022438 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 3434.000000,1574.000000, 0.685703,0.314297, 594 chr1 1303050 1303054 rs77428272 0 + GTGA GTGA -/GTGA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 -,GTGA, 2062.000000,2946.000000, 0.411741,0.588259, 594 chr1 1303102 1303106 rs201555063 0 + TTTA TTTA -/TTTA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 -,TTTA, 2073.000000,2935.000000, 0.413938,0.586062, 594 chr1 1303253 1303254 rs34316807 0 - A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1303344 1303345 rs75064234 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 2942.000000,2066.000000, 0.587460,0.412540, 594 chr1 1303349 1303350 rs77752170 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 G,T, 2066.000000,2942.000000, 0.412540,0.587460, 594 chr1 1303556 1303557 rs79471774 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,GMI, 2 C,G, 2067.000000,2941.000000, 0.412740,0.587260, 594 chr1 1303893 1303894 rs35716478 0 - C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1304700 1304701 rs150231511 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 -,T, 2059.000000,2949.000000, 0.411142,0.588858, 594 chr1 1304935 1304936 rs4498744 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2947.000000,2061.000000, 0.588458,0.411542, 594 chr1 1305095 1305096 rs34953014 0 - G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1305183 1305183 rs570989366 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 3112.000000,1896.000000, 0.621406,0.378594, 594 chr1 1305560 1305561 rs17160669 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 2952.000000,2056.000000, 0.589457,0.410543, maf-5-some-pop 594 chr1 1305696 1305697 rs111421264 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 2056.000000,2952.000000, 0.410543,0.589457, 594 chr1 1305699 1305700 rs113429154 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 2952.000000,2056.000000, 0.589457,0.410543, 594 chr1 1305806 1305807 rs143644995 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 118.000000,4890.000000, 0.023562,0.976438, 594 chr1 1305808 1305809 rs112274320 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4613.000000,395.000000, 0.921126,0.078874, 594 chr1 1305963 1305964 rs34457386 0 - G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1306345 1306352 rs200422955 0 + CAGGCCC CAGGCCC -/CAGGCCC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CAGGCCC, 88.000000,4920.000000, 0.017572,0.982428, 594 chr1 1306917 1306918 rs112607487 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4661.000000,347.000000, 0.930711,0.069289, 594 chr1 1308090 1308091 rs111532869 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,T, 153.000000,4855.000000, 0.030551,0.969449, 594 chr1 1308114 1308115 rs145983033 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,G, 55.000000,4953.000000, 0.010982,0.989018, 594 chr1 1308284 1308286 rs201504239 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GA, 65.000000,4943.000000, 0.012979,0.987021, 594 chr1 1308288 1308289 rs12408046 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1950.000000,3058.000000, 0.389377,0.610623, 594 chr1 1308330 1308331 rs141201251 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 594 chr1 1308386 1308387 rs12408051 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,CSHL-HAPMAP,ENSEMBL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 1940.000000,3068.000000, 0.387380,0.612620, 594 chr1 1308458 1308459 rs12091278 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 4675.000000,333.000000, 0.933506,0.066494, 594 chr1 1308627 1308628 rs2477775 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 231.000000,4777.000000, 0.046126,0.953874, 594 chr1 1308870 1308871 rs2649595 0 - A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1308961 1308962 rs113848969 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4691.000000,317.000000, 0.936701,0.063299, 594 chr1 1309184 1309185 rs111933693 0 + T T C/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 220.000000,4788.000000, 0.043930,0.956070, 594 chr1 1309404 1309405 rs150194697 0 + T T C/T genomic single unknown 0 0 missense exact 1 5 1000GENOMES,EVA-GONL,EXOME_CHIP,NHLBI-ESP,SSMP, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 594 chr1 1309457 1309458 rs8146 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,APPLERA_GI,BUSHMAN,CGAP-GAI,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, 594 chr1 1309556 1309557 rs3736374 0 - C C C/G genomic single unknown 0 0 missense exact 1 3 1000GENOMES,EXOME_CHIP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1309941 1309942 rs11548463 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CGAP-GAI,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, 594 chr1 1310073 1310074 rs2765035 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 594 chr1 1310180 1310181 rs112533928 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 4318.000000,690.000000, 0.862220,0.137780, 594 chr1 1310667 1310668 rs2242398 0 - A A A/C/G/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 SingleClassQuadAllelic 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,YUSUKE, 4 A,C,G,T, 1302.000000,3706.000000,3706.000000,1302.000000, 0.129992,0.370008,0.370008,0.129992, maf-5-some-pop,maf-5-all-pops 595 chr1 1310768 1310769 rs146403839 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 595 chr1 1311052 1311053 rs540813109 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 -,G, 74.000000,4934.000000, 0.014776,0.985224, 595 chr1 1311167 1311168 rs147876340 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 392.000000,4616.000000, 0.078275,0.921725, 595 chr1 1311302 1311303 rs113237376 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4685.000000,323.000000, 0.935503,0.064497, 595 chr1 1311377 1311378 rs2477776 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3700.000000,1308.000000, 0.738818,0.261182, 595 chr1 1311404 1311405 rs111953393 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 322.000000,4686.000000, 0.064297,0.935703, 595 chr1 1311433 1311434 rs2765032 0 - T T A/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1311532 1311533 rs2649590 0 - G G C/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1311541 1311542 rs9730511 0 - G G C/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1313340 1313341 rs145364433 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 595 chr1 1313488 1313489 rs112838388 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, 595 chr1 1313583 1313584 rs11489820 0 - G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1313929 1313930 rs144640318 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 337.000000,4671.000000, 0.067292,0.932708, 595 chr1 1313970 1313971 rs112394535 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4670.000000,338.000000, 0.932508,0.067492, 595 chr1 1314171 1314172 rs2477777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 983.000000,4025.000000, 0.196286,0.803714, maf-5-some-pop,maf-5-all-pops 595 chr1 1314463 1314464 rs70949583 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 8 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 -,T, 4715.000000,293.000000, 0.941494,0.058506, 595 chr1 1314467 1314468 rs570305855 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 330.000000,4678.000000, 0.065895,0.934105, 595 chr1 1315064 1315065 rs188670510 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4947.000000,61.000000, 0.987819,0.012180, 595 chr1 1315274 1315275 rs70949584 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BILGI_BIOE,BL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 -,A, 4687.000000,321.000000, 0.935903,0.064097, 595 chr1 1315422 1315423 rs140742799 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1315585 1315586 rs113457604 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 332.000000,4676.000000, 0.066294,0.933706, 595 chr1 1316121 1316122 rs74047249 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,C, 68.000000,4940.000000, 0.013578,0.986422, 595 chr1 1316669 1316670 rs2765029 0 - C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 595 chr1 1316886 1316887 rs4970443 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 394.000000,4614.000000, 0.078674,0.921326, 595 chr1 1317754 1317755 rs61767967 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,G, 2847.000000,2161.000000, 0.568490,0.431510, 595 chr1 1317868 1317869 rs537520061 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, 595 chr1 1317869 1317870 rs557397289 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4676.000000,332.000000, 0.933706,0.066294, 595 chr1 1317870 1317871 rs3118355 0 - C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,GMI,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1318115 1318116 rs113643701 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,GMI, 2 C,T, 2238.000000,2770.000000, 0.446885,0.553115, 595 chr1 1318209 1318220 rs568521422 0 + AACAATCCAGT AACAATCCAGT -/AACAATCCAGT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AACAATCCAGT, 324.000000,4684.000000, 0.064696,0.935304, 595 chr1 1318264 1318265 rs368836064 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4613.000000,395.000000, 0.921126,0.078874, 595 chr1 1318272 1318273 rs66559562 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BGI,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 1866.000000,3142.000000, 0.372604,0.627396, 595 chr1 1318350 1318351 rs2985898 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop 595 chr1 1318460 1318461 rs146284235 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 595 chr1 1318463 1318464 rs369482566 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 595 chr1 1319935 1319936 rs551011501 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 863.000000,4145.000000, 0.172324,0.827676, 595 chr1 1320104 1320105 rs138128469 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1320128 1320129 rs9727393 0 - C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 595 chr1 1320407 1320408 rs142102173 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 595 chr1 1320434 1320435 rs112613680 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, 595 chr1 1320615 1320616 rs112197711 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, 595 chr1 1320763 1320764 rs4970444 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3981.000000,1027.000000, 0.794928,0.205072, 595 chr1 1321089 1321090 rs144993949 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4783.000000,225.000000, 0.955072,0.044928, 595 chr1 1322210 1322211 rs199680791 0 + C C -/C genomic deletion unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,SSMP, 2 -,C, 143.000000,4865.000000, 0.028554,0.971446, 595 chr1 1322267 1322268 rs143567956 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, 595 chr1 1323029 1323030 rs146564472 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 262.000000,4746.000000, 0.052316,0.947684, 595 chr1 1323645 1323646 rs148937622 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 234.000000,4774.000000, 0.046725,0.953275, 595 chr1 1323945 1323945 rs574214305 0 + - - -/TC/TGTC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 3 -,TC,TGTC, 4765.000000,234.000000,9.000000, 0.951478,0.046725,0.001797, 595 chr1 1323946 1323947 rs149870149 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,GMI, 2 C,G, 4062.000000,946.000000, 0.811102,0.188898, 595 chr1 1323957 1323965 rs556548230 0 + TCTCTCTA TCTCTCTA -/TCTCTCTA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TCTCTCTA, 76.000000,4932.000000, 0.015176,0.984824, 595 chr1 1323960 1323961 rs200013239 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,C, 107.000000,4901.000000, 0.021366,0.978634, 595 chr1 1323964 1323965 rs146981251 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,C, 4423.000000,585.000000, 0.883187,0.116813, 595 chr1 1323966 1323967 rs544534576 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSIP, 2 A,C, 4706.000000,302.000000, 0.939696,0.060304, 595 chr1 1325156 1325157 rs113617566 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1325294 1325295 rs111353973 0 + C C A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 145.000000,4863.000000, 0.028954,0.971046, 595 chr1 1325493 1325494 rs546221507 0 + A A -/A genomic deletion unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 -,A, 1856.000000,3152.000000, 0.370607,0.629393, 595 chr1 1325989 1325990 rs147017832 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 595 chr1 1327753 1327754 rs137906875 0 - G G C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1328970 1328971 rs11485864 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4582.000000,426.000000, 0.914936,0.085064, 595 chr1 1329331 1329332 rs144707149 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 595 chr1 1329894 1329895 rs111635400 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, 595 chr1 1330017 1330018 rs142365476 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, 595 chr1 1330290 1330291 rs377333233 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1330425 1330426 rs145279159 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 595 chr1 1330429 1330430 rs113548627 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1023.000000,3985.000000, 0.204273,0.795727, 595 chr1 1330725 1330726 rs1240746 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1597.000000,3411.000000, 0.318890,0.681110, 595 chr1 1330958 1330959 rs113459307 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4677.000000,331.000000, 0.933906,0.066094, 595 chr1 1331065 1331066 rs113248305 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, 595 chr1 1331832 1331833 rs139373344 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 4867.000000,141.000000, 0.971845,0.028155, 595 chr1 1331865 1331866 rs150005823 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, 595 chr1 1331936 1331937 rs116584203 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 595 chr1 1332111 1332112 rs11488469 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 A,G, 4581.000000,427.000000, 0.914736,0.085264, 595 chr1 1332136 1332137 rs532056593 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4938.000000,70.000000, 0.986022,0.013978, 595 chr1 1332451 1332452 rs111376007 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, 595 chr1 1332948 1332949 rs140331512 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 595 chr1 1333119 1333120 rs1240744 0 - C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1334052 1334057 rs3831366 0 + TAGAG TAGAG -/TAGAG genomic deletion unknown 0 0 near-gene-5,splice-3 range 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,YUSUKE, 2 -,TAGAG, 371.000000,4637.000000, 0.074082,0.925919, 595 chr1 1334474 1334475 rs17851391 0 + G G C/G genomic single unknown 0 0 near-gene-5,ncRNA,missense,untranslated-5 exact 1 10 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,SEATTLESEQ, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, 595 chr1 1334699 1334700 rs112789149 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 595 chr1 1335217 1335218 rs2291889 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop 595 chr1 1335301 1335302 rs1240707 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3997.000000,1011.000000, 0.798123,0.201877, maf-5-some-pop 595 chr1 1335789 1335790 rs1240708 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1736.000000,3272.000000, 0.346645,0.653355, maf-5-some-pop 595 chr1 1336005 1336006 rs111876693 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, 595 chr1 1336477 1336478 rs113869112 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, 595 chr1 1336481 1336482 rs140894412 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 421.000000,4587.000000, 0.084065,0.915935, 595 chr1 1336625 1336626 rs112501033 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, 595 chr1 1336677 1336678 rs17139966 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop 595 chr1 1336701 1336702 rs150475815 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, 595 chr1 1337219 1337220 rs139295104 0 + G G A/G genomic single unknown 0 0 near-gene-3,ncRNA exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 421.000000,4587.000000, 0.084065,0.915935, 595 chr1 1337333 1337334 rs1171 0 + G G G/T genomic single unknown 0 0 near-gene-3,ncRNA,untranslated-3 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,LEE,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WIAF, 2 G,T, 3151.000000,1857.000000, 0.629193,0.370807, maf-5-some-pop 595 chr1 1338279 1338280 rs112491004 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3997.000000,1011.000000, 0.798123,0.201877, 595 chr1 1338323 1338324 rs146480127 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, 595 chr1 1338507 1338507 rs552220312 0 + - - -/AAAAAA genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AAAAAA, 4642.000000,366.000000, 0.926917,0.073083, 595 chr1 1338595 1338596 rs17160975 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop 595 chr1 1338972 1338973 rs17363048 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3150.000000,1858.000000, 0.628994,0.371006, maf-5-some-pop,maf-5-all-pops 595 chr1 1339287 1339288 rs35299041 0 - C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1339464 1339465 rs113272711 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,G, 4864.000000,144.000000, 0.971246,0.028754, 595 chr1 1339514 1339515 rs138217691 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 595 chr1 1339608 1339609 rs112610278 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4864.000000,144.000000, 0.971246,0.028754, 595 chr1 1339723 1339724 rs144228847 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 595 chr1 1339726 1339727 rs148311129 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4587.000000,421.000000, 0.915935,0.084065, 595 chr1 1340210 1340211 rs139904601 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1340240 1340241 rs143379804 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 95.000000,4913.000000, 0.018970,0.981030, 595 chr1 1340284 1340295 rs201938505 0 + GTGCAGCTACG GTGCAGCTACG -/GTGCAGCTACG genomic deletion unknown 0 0 intron,near-gene-3 range 1 2 1000GENOMES,EVA-GONL, 2 -,GTGCAGCTACG, 269.000000,4739.000000, 0.053714,0.946286, 595 chr1 1340445 1340446 rs150734846 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 595 chr1 1340695 1340696 rs4970446 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1011.000000,3997.000000, 0.201877,0.798123, 595 chr1 1341184 1341185 rs17160977 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 10 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SSMP, 2 A,G, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop 595 chr1 1341510 1341511 rs112062737 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4674.000000,334.000000, 0.933307,0.066693, 595 chr1 1342085 1342086 rs527501877 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 160.000000,4848.000000, 0.031949,0.968051, 595 chr1 1342268 1342269 rs536111712 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 488.000000,4520.000000, 0.097444,0.902556, 595 chr1 1342611 1342612 rs2275915 0 + G G C/G genomic single unknown 0 0 untranslated-5 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SEQUENOM,SSMP,TSC-CSHL,YUSUKE, 2 C,G, 2155.000000,2853.000000, 0.430312,0.569688, 595 chr1 1342944 1342945 rs34442823 0 - C C A/C/G/T genomic single unknown 0 0 near-gene-5 exact 1 SingleClassQuadAllelic 6 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI, 4 A,C,G,T, 1830.000000,3178.000000,3178.000000,1830.000000, 0.182708,0.317292,0.317292,0.182708, 595 chr1 1343134 1343135 rs141894431 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 285.000000,4723.000000, 0.056909,0.943091, 595 chr1 1343665 1343666 rs28418680 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1028.000000,3980.000000, 0.205272,0.794728, 595 chr1 1343827 1343828 rs140270653 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 595 chr1 1344066 1344067 rs1240712 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1420.000000,3588.000000, 0.283546,0.716454, maf-5-some-pop 595 chr1 1344189 1344190 rs112494646 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 595 chr1 1344410 1344411 rs150073991 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, 595 chr1 1344481 1344482 rs145326937 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4585.000000,423.000000, 0.915535,0.084465, 595 chr1 1344538 1344539 rs149195720 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4583.000000,425.000000, 0.915136,0.084864, 595 chr1 1344588 1344589 rs143274502 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4909.000000,99.000000, 0.980232,0.019768, 595 chr1 1344685 1344686 rs112301494 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3974.000000,1034.000000, 0.793530,0.206470, 595 chr1 1345002 1345003 rs1240713 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1158.000000,3850.000000, 0.231230,0.768770, 595 chr1 1345226 1345227 rs112160869 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 G,T, 4554.000000,454.000000, 0.909345,0.090655, 595 chr1 1345421 1345422 rs546451712 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, 595 chr1 1345474 1345475 rs532205999 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4920.000000,88.000000, 0.982428,0.017572, 595 chr1 1345479 1345480 rs552379133 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 86.000000,4922.000000, 0.017173,0.982827, 595 chr1 1345494 1345495 rs147351788 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 500.000000,4508.000000, 0.099840,0.900160, 595 chr1 1345562 1345563 rs369543636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, 595 chr1 1345830 1345831 rs562671994 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 56.000000,4952.000000, 0.011182,0.988818, 595 chr1 1345895 1345896 rs139832200 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 595 chr1 1345969 1345970 rs28756423 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,EVA-GONL,SSAHASNP,SSMP, 2 A,G, 3811.000000,1197.000000, 0.760982,0.239018, 595 chr1 1345995 1345996 rs1240716 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,EVA-GONL,KWOK,SC_JCM,SSMP, 2 G,T, 3474.000000,1534.000000, 0.693690,0.306310, 595 chr1 1346256 1346257 rs1240717 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3430.000000,1578.000000, 0.684904,0.315096, 595 chr1 1346575 1346576 rs113066461 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4667.000000,341.000000, 0.931909,0.068091, 595 chr1 1346702 1346703 rs1240718 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1573.000000,3435.000000, 0.314097,0.685903, 595 chr1 1346904 1346905 rs1240719 0 + T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1480.000000,3528.000000, 0.295527,0.704473, 595 chr1 1346971 1346972 rs141714940 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WARNICH_LAB, 2 C,G, 525.000000,4483.000000, 0.104832,0.895168, 595 chr1 1347037 1347038 rs138875590 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 595 chr1 1347114 1347116 rs112190084 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,BUSHMAN, 2 -,AT, 89.000000,4919.000000, 0.017772,0.982228, 595 chr1 1347234 1347234 rs562953094 0 + - - -/CCAGGTC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CCAGGTC, 4708.000000,300.000000, 0.940096,0.059904, 595 chr1 1347308 1347309 rs1240720 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SSMP,TISHKOFF, 2 C,G, 1480.000000,3528.000000, 0.295527,0.704473, 595 chr1 1347332 1347333 rs113574359 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 134.000000,4874.000000, 0.026757,0.973243, 595 chr1 1347462 1347463 rs146839906 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 697.000000,4311.000000, 0.139177,0.860823, 595 chr1 1347558 1347559 rs112458609 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4666.000000,342.000000, 0.931709,0.068291, 595 chr1 1347868 1347868 rs113466973 0 + - - -/AG genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,GMI, 2 -,AG, 3536.000000,1472.000000, 0.706070,0.293930, 595 chr1 1348002 1348003 rs191430682 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 4737.000000,271.000000, 0.945887,0.054113, 595 chr1 1348179 1348183 rs200218382 0 + GATT GATT -/GATT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GATT, 51.000000,4957.000000, 0.010184,0.989816, 595 chr1 1348284 1348291 rs560252765 0 + AGCAGTA AGCAGTA -/AGCAGTA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AGCAGTA, 56.000000,4952.000000, 0.011182,0.988818, 595 chr1 1348312 1348318 rs201284556 0 + TTACTC TTACTC -/TTACTC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TTACTC, 87.000000,4921.000000, 0.017372,0.982628, 595 chr1 1348785 1348786 rs112328758 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 415.000000,4593.000000, 0.082867,0.917133, 595 chr1 1348991 1348992 rs201854619 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 -,T, 232.000000,4776.000000, 0.046326,0.953674, 595 chr1 1349132 1349133 rs146944885 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4879.000000,129.000000, 0.974241,0.025759, 595 chr1 1350238 1350239 rs1240721 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 595 chr1 1350390 1350391 rs112401380 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3857.000000,1151.000000, 0.770168,0.229832, 595 chr1 1350600 1350601 rs34817085 0 - G G A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 4 A,C,G,T, 1164.000000,3844.000000,3844.000000,1164.000000, 0.116214,0.383786,0.383786,0.116214, 595 chr1 1350752 1350753 rs151242580 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1350764 1350765 rs146584313 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1149.000000,3859.000000, 0.229433,0.770567, 595 chr1 1350934 1350935 rs112952079 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 595 chr1 1351038 1351039 rs141289858 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1147.000000,3861.000000, 0.229034,0.770966, 595 chr1 1351134 1351138 rs200282760 0 + CGCT CGCT -/CGCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CGCT, 1093.000000,3915.000000, 0.218251,0.781749, 595 chr1 1351142 1351148 rs201508233 0 + TCCGCT TCCGCT -/TCCGCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TCCGCT, 1094.000000,3914.000000, 0.218450,0.781550, 595 chr1 1351171 1351172 rs143096394 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,T, 4608.000000,400.000000, 0.920128,0.079872, 595 chr1 1351355 1351356 rs112581014 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1474.000000,3534.000000, 0.294329,0.705671, 595 chr1 1352127 1352128 rs142171871 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 -,T, 1147.000000,3861.000000, 0.229034,0.770966, 595 chr1 1352379 1352380 rs146864254 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,PJP,SSMP, 2 C,T, 3884.000000,1124.000000, 0.775559,0.224441, 595 chr1 1352410 1352411 rs12354306 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,PJP,SC_SNP,SSMP, 2 A,G, 3865.000000,1143.000000, 0.771765,0.228235, 595 chr1 1352425 1352426 rs111772342 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 3884.000000,1124.000000, 0.775559,0.224441, 595 chr1 1352502 1352503 rs150666652 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4909.000000,99.000000, 0.980232,0.019768, 595 chr1 1352719 1352720 rs111952219 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4782.000000,226.000000, 0.954872,0.045128, 595 chr1 1352942 1352943 rs4970373 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,G, 177.000000,4831.000000, 0.035344,0.964656, 595 chr1 1353048 1353049 rs145355043 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 97.000000,4911.000000, 0.019369,0.980631, 595 chr1 1353379 1353380 rs11488462 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1174.000000,3834.000000, 0.234425,0.765575, maf-5-some-pop,maf-5-all-pops 595 chr1 1353560 1353561 rs4970447 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 11 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3854.000000,1154.000000, 0.769569,0.230431, 595 chr1 1353590 1353591 rs111436371 0 + G G G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 4919.000000,89.000000, 0.982228,0.017772, 595 chr1 1353600 1353601 rs78991109 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,ENSEMBL, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 595 chr1 1353602 1353603 rs4970448 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 12 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3834.000000,1174.000000, 0.765575,0.234425, 595 chr1 1353631 1353632 rs4970449 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3834.000000,1174.000000, 0.765575,0.234425, 595 chr1 1353841 1353842 rs112936646 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, 595 chr1 1354059 1354060 rs143038747 0 + G G A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 271.000000,4737.000000, 0.054113,0.945887, 595 chr1 1354550 1354551 rs3766166 0 - C C A/C/G/T genomic single unknown 0 0 missense,untranslated-3 exact 1 SingleClassQuadAllelic 3 1000GENOMES,GMI,YUSUKE, 4 A,C,G,T, 7.000000,5001.000000,5001.000000,7.000000, 0.000699,0.499301,0.499301,0.000699, 595 chr1 1354919 1354920 rs145112172 0 + C C A/C genomic single unknown 0 0 missense,untranslated-3 exact 1 2 1000GENOMES,EXOME_CHIP, 2 A,C, 97.000000,4911.000000, 0.019369,0.980631, 595 chr1 1355019 1355020 rs190884669 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 65.000000,4943.000000, 0.012979,0.987021, 595 chr1 1355159 1355160 rs11488463 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,C, 324.000000,4684.000000, 0.064696,0.935304, 595 chr1 1355445 1355446 rs183348359 0 + G G A/G genomic single unknown 0 0 coding-synon,intron exact 1 1 1000GENOMES, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 595 chr1 1355582 1355583 rs1781133 0 + C C A/C genomic single unknown 0 0 intron,missense exact 1 4 1000GENOMES,BCM_SSAHASNP,SC_JCM,SSAHASNP, 2 A,C, 1163.000000,3845.000000, 0.232228,0.767772, 595 chr1 1355795 1355796 rs145378993 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 1 1000GENOMES, 2 C,T, 4740.000000,268.000000, 0.946486,0.053514, 595 chr1 1356549 1356550 rs12089560 0 + A A A/G genomic single unknown 0 0 untranslated-5 exact 1 12 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3634.000000,1374.000000, 0.725639,0.274361, maf-5-some-pop,maf-5-all-pops 595 chr1 1356879 1356880 rs35428595 0 - T T A/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,ABI,ENSEMBL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1357193 1357194 rs113283213 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 655.000000,4353.000000, 0.130791,0.869209, 595 chr1 1357460 1357461 rs1781134 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 3431.000000,1577.000000, 0.685104,0.314896, 595 chr1 1357659 1357660 rs112321355 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4600.000000,408.000000, 0.918530,0.081470, 595 chr1 1357664 1357665 rs3893396 0 - C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1357758 1357759 rs111858202 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 383.000000,4625.000000, 0.076478,0.923522, 595 chr1 1357992 1357993 rs113336054 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 G,T, 4844.000000,164.000000, 0.967252,0.032748, 595 chr1 1358570 1358571 rs1781135 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 864.000000,4144.000000, 0.172524,0.827476, 595 chr1 1358772 1358773 rs142557804 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WARNICH_LAB, 2 C,T, 4633.000000,375.000000, 0.925120,0.074880, 595 chr1 1359141 1359144 rs200966758 0 + CAT CAT -/CAT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,CAT, 771.000000,4237.000000, 0.153954,0.846046, 595 chr1 1359350 1359351 rs148094917 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4633.000000,375.000000, 0.925120,0.074880, 595 chr1 1359599 1359600 rs1781136 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 4160.000000,848.000000, 0.830671,0.169329, 595 chr1 1359735 1359736 rs112398884 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 157.000000,4851.000000, 0.031350,0.968650, 595 chr1 1359838 1359839 rs145957184 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 119.000000,4889.000000, 0.023762,0.976238, 595 chr1 1360104 1360105 rs4970450 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop,maf-5-all-pops 595 chr1 1360156 1360157 rs145451682 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,T, 259.000000,4749.000000, 0.051717,0.948283, 595 chr1 1360198 1360199 rs112333621 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4524.000000,484.000000, 0.903355,0.096645, 595 chr1 1360279 1360280 rs142493165 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 280.000000,4728.000000, 0.055911,0.944089, 595 chr1 1360474 1360475 rs111642782 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 A,G, 4625.000000,383.000000, 0.923522,0.076478, 595 chr1 1360514 1360515 rs112030392 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 635.000000,4373.000000, 0.126797,0.873203, 595 chr1 1361001 1361002 rs141184576 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, 595 chr1 1361012 1361013 rs150750434 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,G, 4815.000000,193.000000, 0.961462,0.038538, 595 chr1 1361129 1361130 rs138985554 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 572.000000,4436.000000, 0.114217,0.885783, 595 chr1 1361201 1361202 rs145035575 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF,WARNICH_LAB, 2 C,G, 4466.000000,542.000000, 0.891773,0.108227, 595 chr1 1361315 1361316 rs74047250 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 540.000000,4468.000000, 0.107827,0.892173, 595 chr1 1361363 1361364 rs141020511 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 77.000000,4931.000000, 0.015375,0.984625, 595 chr1 1361529 1361530 rs144957058 0 + C C C/T genomic single unknown 0 0 missense exact 1 6 1000GENOMES,EVA-GONL,EXOME_CHIP,LIMM_JT,NHLBI-ESP,SSMP, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, 595 chr1 1361543 1361544 rs145806019 0 + G G A/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,SSMP, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 595 chr1 1361632 1361633 rs12022947 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,SC_SNP,SSMP, 2 A,G, 2003.000000,3005.000000, 0.399960,0.600040, maf-5-some-pop,maf-5-all-pops 595 chr1 1361640 1361641 rs12030806 0 + C C C/T genomic single unknown 0 0 missense exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,SC_SNP,SSMP, 2 C,T, 1596.000000,3412.000000, 0.318690,0.681310, maf-5-some-pop 595 chr1 1361735 1361736 rs72896277 0 + G G A/G genomic single unknown 0 0 missense exact 1 5 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 595 chr1 1361886 1361887 rs111752513 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 595 chr1 1361959 1361960 rs111226832 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 595 chr1 1362150 1362151 rs11800029 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,G, 563.000000,4445.000000, 0.112420,0.887580, 595 chr1 1362189 1362190 rs1781137 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP, 2 C,G, 1592.000000,3416.000000, 0.317891,0.682109, maf-5-some-pop,maf-5-all-pops 595 chr1 1362286 1362287 rs141177577 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 595 chr1 1362340 1362341 rs144977734 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, 595 chr1 1362372 1362373 rs184902754 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 595 chr1 1362389 1362390 rs138827928 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 595 chr1 1362408 1362409 rs142648178 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 499.000000,4509.000000, 0.099641,0.900359, 595 chr1 1362459 1362460 rs144899239 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4441.000000,567.000000, 0.886781,0.113219, 595 chr1 1362547 1362548 rs553622547 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 595 chr1 1363371 1363372 rs567928487 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 595 chr1 1363374 1363375 rs113373846 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,BCM-HGSC-SUB, 2 A,G, 4933.000000,75.000000, 0.985024,0.014976, 595 chr1 1363552 1363567 rs561627653 0 + GAGAGGGGAGGGGAA GAGAGGGGAGGGGAA -/GAGAGGGGAGGGGAA genomic deletion unknown 0 0 near-gene-3 range 1 1 1000GENOMES, 2 -,GAGAGGGGAGGGGAA, 53.000000,4955.000000, 0.010583,0.989417, 595 chr1 1363606 1363607 rs114943237 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop,maf-5-all-pops 595 chr1 1363806 1363807 rs112477683 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 62.000000,4946.000000, 0.012380,0.987620, 595 chr1 1363921 1363922 rs141286142 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, 595 chr1 1364118 1364119 rs140532922 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 595 chr1 1365002 1365003 rs143509573 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 595 chr1 1365244 1365245 rs112499089 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, 595 chr1 1365333 1365334 rs1781138 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 595 chr1 1365399 1365400 rs148583732 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 124.000000,4884.000000, 0.024760,0.975240, 595 chr1 1365758 1365759 rs143000156 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, 595 chr1 1366258 1366258 rs568920459 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,G, 4954.000000,54.000000, 0.989217,0.010783, 595 chr1 1366273 1366274 rs111605018 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 595 chr1 1366393 1366394 rs2004444 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 2625.000000,2383.000000, 0.524161,0.475839, 595 chr1 1366406 1366414 rs533051276 0 + CACCCCCT CACCCCCT -/CACCCCCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CACCCCCT, 3594.000000,1414.000000, 0.717652,0.282348, 595 chr1 1366432 1366433 rs553699392 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, 595 chr1 1366617 1366618 rs143665416 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 595 chr1 1366643 1366644 rs185605572 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 595 chr1 1366838 1366839 rs140465564 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 595 chr1 1366916 1366917 rs873926 0 - G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 595 chr1 1367598 1367599 rs138733159 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, 595 chr1 1367698 1367699 rs11485863 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 271.000000,4737.000000, 0.054113,0.945887, 595 chr1 1367747 1367749 rs201934299 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,CT, 122.000000,4886.000000, 0.024361,0.975639, 595 chr1 1368059 1368060 rs144402554 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 595 chr1 1368063 1368065 rs200098379 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CA, 53.000000,4955.000000, 0.010583,0.989417, 595 chr1 1368437 1368438 rs146375553 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4677.000000,331.000000, 0.933906,0.066094, 595 chr1 1368439 1368440 rs139615235 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 331.000000,4677.000000, 0.066094,0.933906, 595 chr1 1368529 1368530 rs140945431 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, 595 chr1 1368646 1368647 rs1240702 0 - A A A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1368753 1368754 rs1240701 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3474.000000,1534.000000, 0.693690,0.306310, maf-5-some-pop,maf-5-all-pops 595 chr1 1368869 1368870 rs145934101 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 101.000000,4907.000000, 0.020168,0.979832, 595 chr1 1369622 1369623 rs115503338 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 595 chr1 1370066 1370067 rs76731745 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 2947.000000,2061.000000, 0.588458,0.411542, 595 chr1 1371325 1371325 rs545530340 0 + - - -/CGGGCGGGGGCG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,CGGGCGGGGGCG, 3497.000000,1511.000000, 0.698283,0.301717, 595 chr1 1371440 1371441 rs199850075 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 -,G, 279.000000,4729.000000, 0.055711,0.944289, 595 chr1 1373334 1373335 rs3843248 0 - C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1373481 1373482 rs3845296 0 - G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1373566 1373567 rs145904956 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 99.000000,4909.000000, 0.019768,0.980232, 595 chr1 1373677 1373678 rs148133216 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4764.000000,244.000000, 0.951278,0.048722, 595 chr1 1374271 1374272 rs142611683 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 595 chr1 1374751 1374752 rs201042102 0 + C C C/T genomic single unknown 0 0 missense,untranslated-3 exact 1 3 1000GENOMES,EXOME_CHIP,NHLBI-ESP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 595 chr1 1374804 1374805 rs2275916 0 + G G C/G genomic single unknown 0 0 missense,untranslated-3 exact 1 6 1000GENOMES,CSHL-HAPMAP,EVA-GONL,SSAHASNP,SSMP,YUSUKE, 2 C,G, 312.000000,4696.000000, 0.062300,0.937700, 595 chr1 1374833 1374834 rs1892289 0 + A A A/G genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 1654.000000,3354.000000, 0.330272,0.669728, maf-5-some-pop,maf-5-all-pops 595 chr1 1375061 1375062 rs570955388 0 + C C C/G genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 1 1000GENOMES, 2 C,G, 4930.000000,78.000000, 0.984425,0.015575, 595 chr1 1375184 1375185 rs1240699 0 - G G C/G genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SEQUENOM,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1375206 1375207 rs140247431 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 394.000000,4614.000000, 0.078674,0.921326, 595 chr1 1375809 1375810 rs4590 0 - C C C/G genomic single unknown 0 0 untranslated-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,LEE,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF,UWGC, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 595 chr1 1375946 1375947 rs13683 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,CGAP-GAI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 340.000000,4668.000000, 0.067891,0.932109, 595 chr1 1376066 1376067 rs3087902 0 - C C A/G cDNA single by-frequency 0.2688 0.249292 untranslated-3 exact 1 NonIntegerChromCount 3 CGAP-GAI,LEE,SEQUENOM, 2 A,G, 29.440001,154.559998, 0.160000,0.840000, maf-5-some-pop,maf-5-all-pops 595 chr1 1376213 1376214 rs1240698 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1568.000000,3440.000000, 0.313099,0.686901, maf-5-some-pop,maf-5-all-pops 595 chr1 1376394 1376395 rs188166714 0 + A A A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, 595 chr1 1376557 1376558 rs148358435 0 + C C A/C genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1377041 1377042 rs143842661 0 - C C C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1377431 1377432 rs143242116 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 595 chr1 1377440 1377441 rs146696794 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 595 chr1 1377534 1377535 rs78727284 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 338.000000,4670.000000, 0.067492,0.932508, 595 chr1 1377798 1377799 rs150280246 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 595 chr1 1377996 1377997 rs147051399 0 - C C C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1378007 1378008 rs188333330 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, 595 chr1 1378101 1378102 rs112270823 0 + A A A/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4228.000000,780.000000, 0.844249,0.155751, 595 chr1 1378313 1378318 rs112509410 0 + TTTTC TTTTC -/TTTTC genomic deletion unknown 0 0 intron,near-gene-3 range 1 2 1000GENOMES,BUSHMAN, 2 -,TTTTC, 66.000000,4942.000000, 0.013179,0.986821, 595 chr1 1378662 1378663 rs139196948 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 595 chr1 1378942 1378943 rs142431408 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 595 chr1 1378999 1379000 rs147959152 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 353.000000,4655.000000, 0.070487,0.929513, 595 chr1 1379021 1379022 rs202222016 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 -,G, 355.000000,4653.000000, 0.070887,0.929113, 595 chr1 1379498 1379499 rs78710859 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4649.000000,359.000000, 0.928315,0.071685, 595 chr1 1380060 1380061 rs138755169 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 333.000000,4675.000000, 0.066494,0.933506, 595 chr1 1380079 1380080 rs4066618 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,TISHKOFF,TSC-CSHL, 2 A,G, 4789.000000,219.000000, 0.956270,0.043730, 595 chr1 1380103 1380104 rs372588274 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, 595 chr1 1380434 1380435 rs146236747 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 1488.000000,3520.000000, 0.297125,0.702875, 595 chr1 1380613 1380614 rs1153093 0 - C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,KWOK,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1382530 1382531 rs189763155 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 595 chr1 1382537 1382538 rs192749661 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 595 chr1 1383586 1383587 rs147709992 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4688.000000,320.000000, 0.936102,0.063898, 595 chr1 1383916 1383917 rs149196920 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 595 chr1 1384006 1384007 rs11488464 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4892.000000,116.000000, 0.976837,0.023163, 595 chr1 1384145 1384146 rs137994401 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 595 chr1 1384294 1384295 rs11485865 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3008.000000,2000.000000, 0.600639,0.399361, 595 chr1 1384388 1384389 rs11485866 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1986.000000,3022.000000, 0.396565,0.603435, 595 chr1 1384428 1384429 rs139469422 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 355.000000,4653.000000, 0.070887,0.929113, 595 chr1 1384549 1384550 rs113590428 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, 595 chr1 1384606 1384608 rs201648114 0 + CT CT -/CT genomic deletion unknown 0 0 intron,near-gene-5 range 1 2 1000GENOMES,TISHKOFF, 2 -,CT, 62.000000,4946.000000, 0.012380,0.987620, 595 chr1 1384639 1384643 rs200758874 0 + TCTC TCTC -/TCTC genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 -,TCTC, 226.000000,4782.000000, 0.045128,0.954872, 595 chr1 1384656 1384660 rs567229053 0 + CTCT CTCT -/CTCT genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,CTCT, 126.000000,4882.000000, 0.025160,0.974840, 595 chr1 1384659 1384660 rs200568204 0 + T T -/T genomic deletion unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 -,T, 92.000000,4916.000000, 0.018371,0.981629, 595 chr1 1384706 1384710 rs201116686 0 + TCTT TCTT -/TCTT genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,TCTT, 88.000000,4920.000000, 0.017572,0.982428, 595 chr1 1385210 1385211 rs1312568 0 + A A A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP, 2 A,G, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop 595 chr1 1385572 1385573 rs1240588 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3410.000000,1598.000000, 0.680911,0.319089, 595 chr1 1385672 1385673 rs150134027 0 + C C A/C genomic single unknown 0 0 intron,untranslated-5 exact 1 1 1000GENOMES, 2 A,C, 65.000000,4943.000000, 0.012979,0.987021, 595 chr1 1385702 1385704 rs538836491 0 + AA AA -/AA genomic deletion unknown 0 0 intron,untranslated-5 range 1 1 1000GENOMES, 2 -,AA, 3490.000000,1518.000000, 0.696885,0.303115, 595 chr1 1386088 1386089 rs149262155 0 + C C C/T genomic single unknown 0 0 missense exact 1 5 1000GENOMES,EVA-GONL,EXOME_CHIP,ILLUMINA,NHLBI-ESP, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 595 chr1 1386159 1386160 rs11488700 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, 595 chr1 1386195 1386196 rs113446678 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,NHLBI-ESP, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 595 chr1 1386407 1386408 rs34568062 0 - T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1386577 1386578 rs142472854 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 282.000000,4726.000000, 0.056310,0.943690, 595 chr1 1386929 1386930 rs150873804 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, 595 chr1 1387105 1387106 rs3845297 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3888.000000,1120.000000, 0.776358,0.223642, maf-5-some-pop,maf-5-all-pops 595 chr1 1387117 1387118 rs3845298 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4009.000000,999.000000, 0.800519,0.199481, 595 chr1 1387166 1387167 rs1695859 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1846.000000,3162.000000, 0.368610,0.631390, maf-5-some-pop,maf-5-all-pops 595 chr1 1387169 1387170 rs112484029 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4791.000000,217.000000, 0.956669,0.043331, 595 chr1 1387212 1387213 rs3899060 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 752.000000,4256.000000, 0.150160,0.849840, maf-5-some-pop,maf-5-all-pops 595 chr1 1387261 1387262 rs112013420 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, 595 chr1 1387281 1387282 rs113840210 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1387292 1387293 rs1781142 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ENSEMBL,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, 595 chr1 1387318 1387319 rs111805964 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 595 chr1 1387347 1387348 rs1781143 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2939.000000,2069.000000, 0.586861,0.413139, 595 chr1 1387431 1387432 rs112072883 0 + G G C/G genomic single unknown 0 0 missense exact 1 5 1000GENOMES,BUSHMAN,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, 595 chr1 1387666 1387667 rs1781144 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 0.000000,5008.000000, 0.000000,1.000000, 595 chr1 1387725 1387726 rs9793066 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3553.000000,1455.000000, 0.709465,0.290535, 595 chr1 1387746 1387747 rs113110734 0 + C C C/T genomic single unknown 0 0 missense exact 1 5 1000GENOMES,BUSHMAN,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 595 chr1 1387763 1387764 rs9793256 0 + G G A/G genomic single unknown 0 0 missense exact 1 16 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1402.000000,3606.000000, 0.279952,0.720048, 595 chr1 1387890 1387891 rs1624483 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 1605.000000,3403.000000, 0.320487,0.679513, 595 chr1 1387919 1387920 rs1625156 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1973.000000,3035.000000, 0.393970,0.606030, 595 chr1 1388177 1388179 rs542674195 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AA, 3348.000000,1660.000000, 0.668530,0.331470, 595 chr1 1388191 1388192 rs75314576 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,TISHKOFF, 2 A,G, 1381.000000,3627.000000, 0.275759,0.724241, 595 chr1 1388205 1388208 rs201870532 0 + AAG AAG -/AAG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,AAG, 3348.000000,1660.000000, 0.668530,0.331470, 595 chr1 1388267 1388268 rs1627833 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3400.000000,1608.000000, 0.678914,0.321086, maf-5-some-pop 595 chr1 1388288 1388289 rs1781145 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1606.000000,3402.000000, 0.320687,0.679313, maf-5-some-pop 595 chr1 1388931 1388932 rs1695860 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2143.000000,2865.000000, 0.427915,0.572085, 595 chr1 1389076 1389077 rs79705309 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 3774.000000,1234.000000, 0.753594,0.246406, 595 chr1 1389082 1389083 rs1695861 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1606.000000,3402.000000, 0.320687,0.679313, 595 chr1 1389249 1389250 rs4970374 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3672.000000,1336.000000, 0.733227,0.266773, 595 chr1 1389340 1389341 rs74314585 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3751.000000,1257.000000, 0.749002,0.250998, 595 chr1 1389471 1389472 rs1695862 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1606.000000,3402.000000, 0.320687,0.679313, 595 chr1 1389773 1389774 rs182547232 0 + C C C/T genomic single unknown 0 0 missense exact 1 3 1000GENOMES,EXOME_CHIP,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 595 chr1 1389842 1389843 rs187191868 0 + G G A/G genomic single unknown 0 0 missense exact 1 3 1000GENOMES,EXOME_CHIP,NHLBI-ESP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 595 chr1 1389885 1389886 rs112630825 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, 595 chr1 1389916 1389917 rs377148167 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4955.000000,53.000000, 0.989417,0.010583, 595 chr1 1389958 1389959 rs368276632 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 1060.000000,3948.000000, 0.211661,0.788339, 595 chr1 1389960 1389961 rs562589112 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 1060.000000,3948.000000, 0.211661,0.788339, 595 chr1 1389961 1389962 rs531606278 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 3948.000000,1060.000000, 0.788339,0.211661, 595 chr1 1389966 1389967 rs1695863 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SC_JCM, 2 C,T, 1060.000000,3948.000000, 0.211661,0.788339, 595 chr1 1389991 1389992 rs200487494 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 3813.000000,1195.000000, 0.761382,0.238618, 595 chr1 1390055 1390056 rs113156348 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,GMI,SSMP,TISHKOFF, 2 A,T, 1254.000000,3754.000000, 0.250399,0.749601, 595 chr1 1390144 1390145 rs112073382 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 4861.000000,147.000000, 0.970647,0.029353, 595 chr1 1390149 1390150 rs4970451 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3408.000000,1600.000000, 0.680511,0.319489, 595 chr1 1390170 1390171 rs113727072 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4006.000000,1002.000000, 0.799920,0.200080, 595 chr1 1390225 1390226 rs112357356 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop,maf-5-all-pops 595 chr1 1390335 1390336 rs1695864 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SC_JCM,TISHKOFF, 2 G,T, 90.000000,4918.000000, 0.017971,0.982029, 595 chr1 1390716 1390717 rs1695866 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2870.000000,2138.000000, 0.573083,0.426917, 595 chr1 1390874 1390875 rs1781147 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 2879.000000,2129.000000, 0.574880,0.425120, maf-5-some-pop,maf-5-all-pops 595 chr1 1390996 1390997 rs1781148 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_JCM,SSMP, 2 G,T, 3407.000000,1601.000000, 0.680312,0.319688, maf-5-some-pop,maf-5-all-pops 595 chr1 1391430 1391431 rs12090088 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,ILLUMINA-UK,SC_SNP,SSMP, 2 C,T, 2888.000000,2120.000000, 0.576677,0.423323, 595 chr1 1391447 1391448 rs542832631 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, 595 chr1 1391458 1391459 rs369694676 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,EVA-GONL,SSMP, 2 C,T, 2122.000000,2886.000000, 0.423722,0.576278, 595 chr1 1391533 1391534 rs78377693 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,PJP,SSMP, 2 A,G, 2126.000000,2882.000000, 0.424521,0.575479, 595 chr1 1391914 1391915 rs529713993 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 595 chr1 1391958 1391960 rs374627973 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,AG, 163.000000,4845.000000, 0.032548,0.967452, 595 chr1 1392031 1392032 rs371585652 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 349.000000,4659.000000, 0.069688,0.930312, 595 chr1 1392208 1392209 rs2936660 0 - G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1392269 1392270 rs563341119 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4898.000000,110.000000, 0.978035,0.021965, 595 chr1 1392439 1392440 rs187077523 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 258.000000,4750.000000, 0.051518,0.948482, 595 chr1 1392450 1392451 rs1781149 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2796.000000,2212.000000, 0.558307,0.441693, 595 chr1 1392721 1392722 rs113946614 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4816.000000,192.000000, 0.961661,0.038339, 595 chr1 1392725 1392726 rs77814176 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1015.000000,3993.000000, 0.202676,0.797324, 595 chr1 1392792 1392793 rs112662693 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 193.000000,4815.000000, 0.038538,0.961462, 595 chr1 1393206 1393207 rs11485867 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 595 chr1 1393301 1393302 rs11488466 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1482.000000,3526.000000, 0.295927,0.704073, 595 chr1 1393302 1393303 rs112191029 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 595 chr1 1393408 1393409 rs146413677 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1393714 1393715 rs139009917 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 595 chr1 1393715 1393716 rs11485868 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 595 chr1 1393762 1393763 rs1781151 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, 595 chr1 1393828 1393828 rs527390775 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 3594.000000,1414.000000, 0.717652,0.282348, 595 chr1 1394110 1394110 rs549050293 0 + - - -/TT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TT, 3722.000000,1286.000000, 0.743211,0.256789, 595 chr1 1394201 1394202 rs143014491 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, 595 chr1 1394240 1394241 rs541708806 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 595 chr1 1394387 1394388 rs144528634 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 4707.000000,301.000000, 0.939896,0.060104, 595 chr1 1394593 1394594 rs199523351 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,SSMP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 595 chr1 1394626 1394627 rs190264554 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1394663 1394664 rs76548509 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 -,C, 1353.000000,3655.000000, 0.270168,0.729832, 595 chr1 1394736 1394737 rs75201061 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,C, 1425.000000,3583.000000, 0.284545,0.715455, 595 chr1 1394749 1394750 rs140945924 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 595 chr1 1394770 1394771 rs78193071 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 3572.000000,1436.000000, 0.713259,0.286741, 595 chr1 1394813 1394814 rs181723185 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 595 chr1 1394853 1394854 rs372776056 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, 595 chr1 1394897 1394898 rs574149418 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 595 chr1 1395041 1395042 rs150487455 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 2877.000000,2131.000000, 0.574481,0.425519, 595 chr1 1395087 1395088 rs186230490 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 595 chr1 1395228 1395229 rs11488461 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, 595 chr1 1395338 1395339 rs11485859 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 595 chr1 1395401 1395402 rs372710996 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,T, 3046.000000,1962.000000, 0.608227,0.391773, 595 chr1 1395402 1395403 rs375327545 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 A,G, 3046.000000,1962.000000, 0.608227,0.391773, 595 chr1 1395403 1395404 rs369885742 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,G, 1962.000000,3046.000000, 0.391773,0.608227, 595 chr1 1395749 1395750 rs78757391 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1429.000000,3579.000000, 0.285343,0.714657, 595 chr1 1396237 1396238 rs72896283 0 + G G G/T genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 G,T, 3715.000000,1293.000000, 0.741813,0.258187, 595 chr1 1396337 1396338 rs76815729 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 1280.000000,3728.000000, 0.255591,0.744409, 595 chr1 1396457 1396458 rs148408734 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4854.000000,154.000000, 0.969249,0.030751, 595 chr1 1396662 1396663 rs72896285 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3702.000000,1306.000000, 0.739217,0.260783, 595 chr1 1396742 1396743 rs200584564 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 -,T, 1306.000000,3702.000000, 0.260783,0.739217, 595 chr1 1396875 1396876 rs77940961 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1147.000000,3861.000000, 0.229034,0.770966, 595 chr1 1397022 1397023 rs147067488 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 3714.000000,1294.000000, 0.741613,0.258387, 595 chr1 1397025 1397026 rs138115213 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1294.000000,3714.000000, 0.258387,0.741613, 595 chr1 1397027 1397028 rs372396535 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,EVA-GONL, 2 C,T, 3714.000000,1294.000000, 0.741613,0.258387, 595 chr1 1397029 1397030 rs375822550 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,G, 1294.000000,3714.000000, 0.258387,0.741613, 595 chr1 1397032 1397033 rs113562564 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 1294.000000,3714.000000, 0.258387,0.741613, 595 chr1 1397098 1397099 rs28690531 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSAHASNP,SSMP, 2 A,G, 1340.000000,3668.000000, 0.267572,0.732428, 595 chr1 1397139 1397140 rs28697106 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,C, 1528.000000,3480.000000, 0.305112,0.694888, 595 chr1 1397146 1397147 rs28413040 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 3457.000000,1551.000000, 0.690296,0.309704, 595 chr1 1397516 1397517 rs144921285 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, 595 chr1 1397681 1397682 rs111356400 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 595 chr1 1397708 1397709 rs112186558 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 206.000000,4802.000000, 0.041134,0.958866, 595 chr1 1397896 1397897 rs147051071 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,TISHKOFF,WARNICH_LAB, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 595 chr1 1399016 1399017 rs150505938 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, 595 chr1 1399204 1399205 rs144877629 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 101.000000,4907.000000, 0.020168,0.979832, 595 chr1 1399296 1399296 rs201328971 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,TISHKOFF, 2 -,T, 4878.000000,130.000000, 0.974042,0.025959, 595 chr1 1399436 1399437 rs11485869 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 595 chr1 1399505 1399506 rs145367788 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 124.000000,4884.000000, 0.024760,0.975240, 595 chr1 1399616 1399617 rs142358585 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, 595 chr1 1399699 1399700 rs11485860 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 595 chr1 1399810 1399821 rs199536789 0 + GGTGGTGAGCC GGTGGTGAGCC -/GGTGGTGAGCC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,GGTGGTGAGCC, 117.000000,4891.000000, 0.023363,0.976637, 595 chr1 1399815 1399816 rs11488468 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 133.000000,4875.000000, 0.026557,0.973442, 595 chr1 1400169 1400170 rs111938039 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 360.000000,4648.000000, 0.071885,0.928115, 595 chr1 1400698 1400699 rs147364442 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 595 chr1 1400741 1400742 rs1240723 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 595 chr1 1401380 1401381 rs111262777 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1401502 1401503 rs28888761 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,T, 130.000000,4878.000000, 0.025959,0.974042, 595 chr1 1401835 1401836 rs577872672 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 127.000000,4881.000000, 0.025359,0.974641, 595 chr1 1402166 1402167 rs112916475 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4865.000000,143.000000, 0.971446,0.028554, 595 chr1 1402217 1402218 rs113653667 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 595 chr1 1402240 1402241 rs146032496 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 595 chr1 1402684 1402685 rs376024470 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, 595 chr1 1402817 1402818 rs183579878 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, 595 chr1 1402986 1402987 rs535218128 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 595 chr1 1402988 1402989 rs558109931 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 143.000000,4865.000000, 0.028554,0.971446, 595 chr1 1403023 1403024 rs184304312 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 595 chr1 1403200 1403201 rs12058632 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,SC_SNP,SSAHASNP,TISHKOFF, 2 A,C, 130.000000,4878.000000, 0.025959,0.974042, 595 chr1 1403330 1403331 rs184147915 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 595 chr1 1403427 1403428 rs1240725 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,KWOK,SC_JCM,SEQUENOM,SSMP, 2 A,G, 2829.000000,2179.000000, 0.564896,0.435104, maf-5-some-pop,maf-5-all-pops 595 chr1 1403441 1403442 rs1240726 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,KWOK,SC_JCM,SEQUENOM,SSMP, 2 A,T, 3484.000000,1524.000000, 0.695687,0.304313, 595 chr1 1403473 1403474 rs1240727 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,KWOK,SC_JCM,SEQUENOM,SSMP, 2 C,G, 2068.000000,2940.000000, 0.412939,0.587061, maf-5-some-pop,maf-5-all-pops 595 chr1 1403495 1403496 rs144393316 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 595 chr1 1403607 1403608 rs1240728 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,KWOK,SC_JCM, 2 C,G, 4916.000000,92.000000, 0.981629,0.018371, 595 chr1 1403633 1403634 rs75395365 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,T, 1420.000000,3588.000000, 0.283546,0.716454, 595 chr1 1403692 1403693 rs139601047 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4701.000000,307.000000, 0.938698,0.061302, 595 chr1 1403813 1403814 rs146537972 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, 595 chr1 1403819 1403820 rs111835061 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,BUSHMAN,NHLBI-ESP,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1403886 1403887 rs149946098 0 + G G A/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 595 chr1 1403893 1403894 rs145079480 0 + A A A/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, 595 chr1 1403972 1403972 rs111566296 0 + - - -/G genomic insertion unknown 0 0 untranslated-3 between 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSIP,SSMP, 2 -,G, 2930.000000,2078.000000, 0.585064,0.414936, 595 chr1 1404000 1404001 rs149123833 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 G,T, 4669.000000,339.000000, 0.932308,0.067692, 595 chr1 1404015 1404016 rs12089719 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1415.000000,3593.000000, 0.282548,0.717452, 595 chr1 1404235 1404236 rs1240730 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,BUSHMAN,CGAP-GAI,EVA-GONL,GMI,KWOK,SC_JCM,SSMP, 2 C,T, 2971.000000,2037.000000, 0.593251,0.406749, 595 chr1 1404242 1404243 rs376118699 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, 595 chr1 1404275 1404276 rs200655334 0 + G G -/G genomic deletion unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 -,G, 124.000000,4884.000000, 0.024760,0.975240, 595 chr1 1404383 1404384 rs12060201 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,SC_SNP,SSAHASNP,TISHKOFF, 2 C,G, 4878.000000,130.000000, 0.974042,0.025959, 595 chr1 1404467 1404468 rs1240731 0 + T T C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,GMI,KWOK,SSMP, 2 C,T, 2356.000000,2652.000000, 0.470447,0.529553, 595 chr1 1404808 1404809 rs1240732 0 + A A A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2660.000000,2348.000000, 0.531150,0.468850, maf-5-some-pop 595 chr1 1404848 1404849 rs74572329 0 + G G C/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1422.000000,3586.000000, 0.283946,0.716054, 595 chr1 1404883 1404884 rs112408342 0 + C C C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, 595 chr1 1405413 1405414 rs1240733 0 + T T C/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2352.000000,2656.000000, 0.469649,0.530351, 595 chr1 1405805 1405806 rs548067533 0 + T T -/T genomic deletion unknown 0 0 near-gene-3,near-gene-5 exact 1 1 1000GENOMES, 2 -,T, 505.000000,4503.000000, 0.100839,0.899161, 595 chr1 1405950 1405951 rs142270607 0 + T T C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1406020 1406020 rs200119093 0 + - - -/G genomic insertion unknown 0 0 near-gene-3,near-gene-5 between 1 2 1000GENOMES,TISHKOFF, 2 -,G, 4881.000000,127.000000, 0.974641,0.025359, 595 chr1 1406523 1406524 rs1240734 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2315.000000,2693.000000, 0.462260,0.537740, maf-5-some-pop,maf-5-all-pops 595 chr1 1406760 1406761 rs145089133 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, 595 chr1 1406873 1406874 rs149072168 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 595 chr1 1406970 1406971 rs79621608 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3845.000000,1163.000000, 0.767772,0.232228, 595 chr1 1407038 1407039 rs191383899 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1407042 1407043 rs1240735 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,KWOK,SC_JCM, 2 A,C, 4542.000000,466.000000, 0.906949,0.093051, 595 chr1 1407164 1407165 rs140699979 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 3 1000GENOMES,ILLUMINA,SSMP, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 595 chr1 1407208 1407209 rs1240505 0 - C C C/G genomic single by-frequency 0.4352 0.167931 ncRNA,untranslated-5 exact 1 NonIntegerChromCount 1 KWOK, 2 C,G, 58.880001,125.120003, 0.320000,0.680000, maf-5-some-pop,maf-5-all-pops 595 chr1 1407371 1407372 rs188574574 0 + T T C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 3444.000000,1564.000000, 0.687700,0.312300, 595 chr1 1407537 1407538 rs78689788 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 3063.000000,1945.000000, 0.611621,0.388379, 595 chr1 1407739 1407740 rs190009463 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, 595 chr1 1408024 1408025 rs145908856 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 595 chr1 1408362 1408363 rs149386026 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1408468 1408469 rs1240737 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2416.000000,2592.000000, 0.482428,0.517572, 595 chr1 1408514 1408515 rs569834397 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 82.000000,4926.000000, 0.016374,0.983626, 595 chr1 1408549 1408550 rs143656588 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,PJP,SSMP,TISHKOFF, 2 C,T, 4574.000000,434.000000, 0.913339,0.086661, 595 chr1 1408570 1408571 rs139809731 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1409369 1409370 rs140237531 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, 595 chr1 1409608 1409609 rs143332441 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 595 chr1 1409638 1409639 rs78712159 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3843.000000,1165.000000, 0.767372,0.232628, 595 chr1 1409653 1409654 rs191555805 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1409779 1409780 rs150852056 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 595 chr1 1409803 1409804 rs138253659 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4703.000000,305.000000, 0.939097,0.060903, 595 chr1 1410054 1410054 rs200910752 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4946.000000,62.000000, 0.987620,0.012380, 595 chr1 1410252 1410253 rs144005379 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 595 chr1 1410624 1410624 rs572303323 0 + - - -/C genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,C, 4894.000000,114.000000, 0.977236,0.022764, 595 chr1 1411028 1411052 rs576215040 0 + CACCAGCGCTCGCCCTGCACTCCA CACCAGCGCTCGCCCTGCACTCCA -/CACCAGCGCTCGCCCTGCACTCCA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CACCAGCGCTCGCCCTGCACTCCA, 56.000000,4952.000000, 0.011182,0.988818, 595 chr1 1411209 1411212 rs201455988 0 + CTC CTC -/CTC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CTC, 130.000000,4878.000000, 0.025959,0.974042, 595 chr1 1411458 1411459 rs148111935 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,PJP,TISHKOFF, 2 C,T, 2238.000000,2770.000000, 0.446885,0.553115, 595 chr1 1411509 1411510 rs188428615 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1411570 1411571 rs139247230 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,T, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1411574 1411575 rs35666103 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 1169.000000,3839.000000, 0.233427,0.766573, 595 chr1 1411645 1411646 rs1151487 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,KWOK,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2397.000000,2611.000000, 0.478634,0.521366, 595 chr1 1411674 1411675 rs192875572 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, 595 chr1 1411875 1411876 rs12354350 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop 595 chr1 1411930 1411931 rs141390154 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1411988 1411989 rs150276403 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 595 chr1 1412237 1412238 rs111993331 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1412307 1412308 rs143786449 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 164.000000,4844.000000, 0.032748,0.967252, 595 chr1 1412310 1412311 rs113763530 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1412326 1412327 rs112841381 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 595 chr1 1412658 1412659 rs146343349 0 + G G G/T genomic single unknown 0 0 ncRNA,missense exact 1 7 1000GENOMES,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 G,T, 4844.000000,164.000000, 0.967252,0.032748, 595 chr1 1412760 1412761 rs112572711 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,NHLBI-ESP,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1413057 1413062 rs199892482 0 + TTTTA TTTTA -/TTTTA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,TTTTA, 1478.000000,3530.000000, 0.295128,0.704872, 595 chr1 1413342 1413343 rs144049805 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4907.000000,101.000000, 0.979832,0.020168, 595 chr1 1413883 1413884 rs368365041 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, 595 chr1 1413924 1413925 rs371404580 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 595 chr1 1413947 1413948 rs369198244 0 + T T C/T genomic single unknown 0 0 coding-synon,intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 249.000000,4759.000000, 0.049720,0.950280, 595 chr1 1413974 1413975 rs113626733 0 + C C C/T genomic single unknown 0 0 coding-synon,intron exact 1 3 1000GENOMES,BUSHMAN,NHLBI-ESP, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 595 chr1 1414070 1414071 rs200314338 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 595 chr1 1414159 1414160 rs558232454 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 129.000000,4879.000000, 0.025759,0.974241, 595 chr1 1414270 1414271 rs371986428 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, 595 chr1 1414302 1414303 rs560306166 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4879.000000,129.000000, 0.974241,0.025759, 595 chr1 1414620 1414621 rs143679706 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4863.000000,145.000000, 0.971046,0.028954, 595 chr1 1414688 1414689 rs79585054 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,GMI,SSMP, 2 C,T, 4710.000000,298.000000, 0.940495,0.059505, 595 chr1 1414703 1414704 rs35839908 0 - C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1414713 1414714 rs1153102 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2825.000000,2183.000000, 0.564097,0.435903, 595 chr1 1414883 1414884 rs142407972 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, 595 chr1 1415062 1415063 rs1153104 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 G,T, 2077.000000,2931.000000, 0.414736,0.585264, 595 chr1 1415083 1415084 rs111163135 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 595 chr1 1415098 1415099 rs1153105 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3326.000000,1682.000000, 0.664137,0.335863, maf-5-some-pop 595 chr1 1415146 1415147 rs148582060 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4860.000000,148.000000, 0.970447,0.029553, 595 chr1 1415162 1415163 rs145679677 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 148.000000,4860.000000, 0.029553,0.970447, 595 chr1 1415167 1415168 rs187899225 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 4919.000000,89.000000, 0.982228,0.017772, 595 chr1 1415174 1415175 rs147712747 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 595 chr1 1415292 1415293 rs142543157 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 595 chr1 1415335 1415336 rs144681855 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 595 chr1 1415475 1415476 rs1153106 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP, 2 C,G, 2077.000000,2931.000000, 0.414736,0.585264, 595 chr1 1415509 1415510 rs150397966 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 148.000000,4860.000000, 0.029553,0.970447, 595 chr1 1415518 1415519 rs138156008 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 595 chr1 1415542 1415543 rs148895188 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 595 chr1 1415603 1415604 rs71628972 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 595 chr1 1415748 1415749 rs137979847 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 53.000000,4955.000000, 0.010583,0.989417, 595 chr1 1416048 1416049 rs112150978 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 4833.000000,175.000000, 0.965056,0.034944, 595 chr1 1416082 1416083 rs111612395 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4935.000000,73.000000, 0.985423,0.014577, 595 chr1 1416116 1416117 rs113958415 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4863.000000,145.000000, 0.971046,0.028954, 595 chr1 1416139 1416140 rs150710180 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4863.000000,145.000000, 0.971046,0.028954, 595 chr1 1416144 1416145 rs139052076 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, 595 chr1 1416157 1416158 rs113814750 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 358.000000,4650.000000, 0.071486,0.928514, 595 chr1 1416221 1416222 rs147329037 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 595 chr1 1416357 1416358 rs199506445 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 595 chr1 1416369 1416370 rs1153096 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2189.000000,2819.000000, 0.437101,0.562899, maf-5-some-pop,maf-5-all-pops 595 chr1 1416450 1416451 rs371215775 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 357.000000,4651.000000, 0.071286,0.928714, 595 chr1 1417035 1417036 rs200239479 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 1176.000000,3832.000000, 0.234824,0.765176, 595 chr1 1417173 1417174 rs148945468 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, 595 chr1 1417184 1417185 rs112570066 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 595 chr1 1417336 1417337 rs192245001 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 286.000000,4722.000000, 0.057109,0.942891, 595 chr1 1417348 1417349 rs368797065 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, 595 chr1 1417434 1417435 rs184582628 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 595 chr1 1417648 1417649 rs140940347 0 + T T G/T genomic single unknown 0 0 ncRNA,missense exact 1 6 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,TISHKOFF, 2 G,T, 99.000000,4909.000000, 0.019768,0.980232, 595 chr1 1417695 1417696 rs819970 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop,maf-5-all-pops 595 chr1 1417704 1417704 rs536511218 0 + - - -/GCCGGCCACAGATGGAGCCCCGC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GCCGGCCACAGATGGAGCCCCGC, 4888.000000,120.000000, 0.976038,0.023962, 595 chr1 1417707 1417708 rs189069699 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1417771 1417772 rs145022716 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, 595 chr1 1417781 1417782 rs819971 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,KWOK,PJP,SSMP,TISHKOFF, 2 A,G, 2286.000000,2722.000000, 0.456470,0.543530, 595 chr1 1418115 1418116 rs2862156 0 - C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,KRIBB_YJKIM,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1418138 1418139 rs3961781 0 - G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 595 chr1 1418305 1418306 rs143411595 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1418395 1418396 rs147153233 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4883.000000,125.000000, 0.975040,0.024960, 595 chr1 1418530 1418531 rs819973 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 5008.000000,0.000000, 1.000000,0.000000, 595 chr1 1418671 1418672 rs139359550 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 595 chr1 1418811 1418812 rs145241900 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4905.000000,103.000000, 0.979433,0.020567, 595 chr1 1419277 1419278 rs819975 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2415.000000,2593.000000, 0.482228,0.517772, 595 chr1 1419521 1419522 rs143557785 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4895.000000,113.000000, 0.977436,0.022564, 595 chr1 1419653 1419654 rs2872242 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,PERLEGEN,TISHKOFF,TSC-CSHL, 2 C,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 595 chr1 1420026 1420027 rs144843738 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 116.000000,4892.000000, 0.023163,0.976837, 595 chr1 1420076 1420077 rs148595005 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4906.000000,102.000000, 0.979633,0.020367, 595 chr1 1420365 1420366 rs371202594 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, 595 chr1 1420452 1420453 rs150679247 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 4 1000GENOMES,EXOME_CHIP,NHLBI-ESP,TISHKOFF, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 595 chr1 1420569 1420574 rs370138022 0 + CCCTC CCCTC -/CCCTC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,SSIP,SSMP, 2 -,CCCTC, 97.000000,4911.000000, 0.019369,0.980631, 595 chr1 1420661 1420662 rs3736372 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,YUSUKE, 2 A,G, 3342.000000,1666.000000, 0.667332,0.332668, maf-5-some-pop,maf-5-all-pops 595 chr1 1420703 1420704 rs4970453 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF,WI_SSAHASNP, 2 C,T, 4834.000000,174.000000, 0.965256,0.034744, 595 chr1 1420752 1420753 rs139537750 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, 595 chr1 1420889 1420890 rs113537492 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 415.000000,4593.000000, 0.082867,0.917133, 595 chr1 1421001 1421002 rs111376501 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 G,T, 316.000000,4692.000000, 0.063099,0.936901, 595 chr1 1421021 1421022 rs112314200 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,MPI_MOLGEN, 2 A,G, 4924.000000,84.000000, 0.983227,0.016773, 595 chr1 1421156 1421157 rs1622213 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_JCM, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 595 chr1 1421187 1421188 rs112490584 0 + C C A/C genomic single unknown 0 0 coding-synon,ncRNA exact 1 3 1000GENOMES,BUSHMAN,NHLBI-ESP, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, 595 chr1 1421247 1421248 rs145894390 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 C,T, 247.000000,4761.000000, 0.049321,0.950679, 595 chr1 1421274 1421275 rs138621682 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 C,T, 117.000000,4891.000000, 0.023363,0.976637, 595 chr1 1421284 1421285 rs140078223 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,C, 115.000000,4893.000000, 0.022963,0.977037, 595 chr1 1421390 1421391 rs150304794 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 115.000000,4893.000000, 0.022963,0.977037, 595 chr1 1421410 1421411 rs138326679 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, 595 chr1 1421530 1421531 rs819976 0 + C C A/C genomic single unknown 0 0 coding-synon,ncRNA exact 1 15 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2417.000000,2591.000000, 0.482628,0.517372, maf-5-some-pop,maf-5-all-pops 595 chr1 1421578 1421579 rs142840431 0 + T T C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 110.000000,4898.000000, 0.021965,0.978035, 595 chr1 1421726 1421727 rs138964794 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 279.000000,4729.000000, 0.055711,0.944289, 595 chr1 1421733 1421734 rs77085485 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,G, 1457.000000,3551.000000, 0.290935,0.709065, 595 chr1 1421751 1421752 rs146336885 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 370.000000,4638.000000, 0.073882,0.926118, 595 chr1 1421775 1421776 rs79881454 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 3811.000000,1197.000000, 0.760982,0.239018, 595 chr1 1421821 1421822 rs181898807 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4816.000000,192.000000, 0.961661,0.038339, 595 chr1 1421953 1421954 rs137911966 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 3 1000GENOMES,EXOME_CHIP,NHLBI-ESP, 2 A,G, 169.000000,4839.000000, 0.033746,0.966254, 595 chr1 1421990 1421991 rs860213 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,EXOME_CHIP,GMI,KWOK,SC_JCM,SC_SNP,SSMP, 2 A,G, 1934.000000,3074.000000, 0.386182,0.613818, 595 chr1 1422716 1422717 rs144449807 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4906.000000,102.000000, 0.979633,0.020367, 595 chr1 1422791 1422792 rs147792428 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 595 chr1 1422902 1422903 rs148862875 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, 595 chr1 1423008 1423009 rs147983918 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 595 chr1 1423266 1423267 rs819977 0 + A A A/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SSMP, 2 A,G, 2570.000000,2438.000000, 0.513179,0.486821, maf-5-some-pop,maf-5-all-pops 595 chr1 1423398 1423399 rs112245150 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, 595 chr1 1423728 1423729 rs77172447 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3813.000000,1195.000000, 0.761382,0.238618, 595 chr1 1423753 1423754 rs148723748 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 595 chr1 1424031 1424032 rs819978 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2578.000000,2430.000000, 0.514776,0.485224, 595 chr1 1424350 1424351 rs113423732 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4863.000000,145.000000, 0.971046,0.028954, 595 chr1 1424394 1424395 rs79789944 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4680.000000,328.000000, 0.934505,0.065495, 595 chr1 1424694 1424695 rs144622790 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 595 chr1 1424923 1424924 rs112670578 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4695.000000,313.000000, 0.937500,0.062500, 595 chr1 1425016 1425017 rs533254283 0 + C C A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1425017 1425018 rs550292155 0 + T T G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 G,T, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1425127 1425128 rs145783063 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3,ncRNA,missense exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 147.000000,4861.000000, 0.029353,0.970647, 595 chr1 1425146 1425147 rs61744101 0 + T T C/T genomic single unknown 0 0 coding-synon,intron,near-gene-3,ncRNA exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1203.000000,3805.000000, 0.240216,0.759784, maf-5-some-pop,maf-5-all-pops 595 chr1 1425161 1425162 rs111957441 0 + C C C/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4890.000000,118.000000, 0.976438,0.023562, 595 chr1 1425180 1425181 rs138842961 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 595 chr1 1425295 1425296 rs41285828 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 2880.000000,2128.000000, 0.575080,0.424920, 595 chr1 1425326 1425327 rs142902991 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 595 chr1 1425383 1425384 rs819979 0 + G G C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,KWOK,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 157.000000,4851.000000, 0.031350,0.968650, 595 chr1 1425406 1425407 rs2649578 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2680.000000,2328.000000, 0.535144,0.464856, maf-5-some-pop,maf-5-all-pops 595 chr1 1425410 1425411 rs61777878 0 + C C A/C genomic single unknown 0 0 intron,untranslated-3 exact 1 4 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL, 2 A,C, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 595 chr1 1425411 1425412 rs2649579 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 10 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2691.000000,2317.000000, 0.537340,0.462660, maf-5-some-pop 595 chr1 1425426 1425427 rs543476495 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,SSIP, 2 A,G, 4140.000000,868.000000, 0.826677,0.173323, 595 chr1 1425489 1425490 rs111984006 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 303.000000,4705.000000, 0.060503,0.939497, 595 chr1 1425501 1425502 rs2242395 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3731.000000,1277.000000, 0.745008,0.254992, maf-5-some-pop,maf-5-all-pops 595 chr1 1425666 1425667 rs61737193 0 + T T C/T genomic single unknown 0 0 coding-synon,near-gene-3,ncRNA exact 1 5 1000GENOMES,BUSHMAN,CORNELL,NHLBI-ESP,TISHKOFF, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 595 chr1 1425699 1425700 rs819980 0 + T T C/T genomic single unknown 0 0 coding-synon,near-gene-3,ncRNA exact 1 20 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2433.000000,2575.000000, 0.485823,0.514177, maf-5-some-pop 595 chr1 1425815 1425816 rs149187984 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 395.000000,4613.000000, 0.078874,0.921126, 595 chr1 1426002 1426003 rs143153541 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-3,ncRNA exact 1 4 1000GENOMES,GMI,NHLBI-ESP,SSMP, 2 A,G, 312.000000,4696.000000, 0.062300,0.937700, 595 chr1 1426477 1426478 rs113618724 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 295.000000,4713.000000, 0.058906,0.941094, 595 chr1 1426873 1426874 rs139112915 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 595 chr1 1427198 1427199 rs151111216 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 595 chr1 1427671 1427672 rs819981 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2575.000000,2433.000000, 0.514177,0.485823, 595 chr1 1427710 1427711 rs148059030 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 595 chr1 1427856 1427856 rs200944167 0 + - - -/CT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 -,CT, 4711.000000,297.000000, 0.940695,0.059305, 595 chr1 1427874 1427875 rs141601998 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 G,T, 132.000000,4876.000000, 0.026358,0.973642, 595 chr1 1427883 1427884 rs139232672 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 83.000000,4925.000000, 0.016573,0.983427, 595 chr1 1427999 1427999 rs59289285 0 + - - -/C genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,PJP,SSMP,TISHKOFF, 2 -,C, 2577.000000,2431.000000, 0.514577,0.485423, 595 chr1 1428128 1428129 rs149878007 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4728.000000,280.000000, 0.944089,0.055911, 595 chr1 1428229 1428230 rs819982 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2432.000000,2576.000000, 0.485623,0.514377, 595 chr1 1428295 1428296 rs142458952 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 119.000000,4889.000000, 0.023762,0.976238, 595 chr1 1428319 1428319 rs531123515 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 3410.000000,1598.000000, 0.680911,0.319089, 595 chr1 1428421 1428422 rs151293203 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1428644 1428645 rs145592166 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 4870.000000,138.000000, 0.972444,0.027556, 595 chr1 1428785 1428786 rs113617310 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 297.000000,4711.000000, 0.059305,0.940695, 595 chr1 1429404 1429405 rs143195521 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 4922.000000,86.000000, 0.982827,0.017173, 595 chr1 1429484 1429485 rs79607068 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1405.000000,3603.000000, 0.280551,0.719449, 595 chr1 1429545 1429546 rs146257197 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 595 chr1 1429651 1429652 rs141687825 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 131.000000,4877.000000, 0.026158,0.973842, 595 chr1 1429672 1429673 rs150497555 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1429748 1429749 rs139474243 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 595 chr1 1429867 1429868 rs182532226 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, 595 chr1 1429932 1429933 rs113541864 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 A,G, 235.000000,4773.000000, 0.046925,0.953075, 595 chr1 1429995 1429996 rs112806684 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 451.000000,4557.000000, 0.090056,0.909944, 595 chr1 1430366 1430367 rs140439620 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 595 chr1 1430515 1430516 rs113215852 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, 595 chr1 1430589 1430590 rs138029725 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4876.000000,132.000000, 0.973642,0.026358, 595 chr1 1430601 1430602 rs4436325 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,SC_JCM,SSAHASNP, 2 G,T, 1510.000000,3498.000000, 0.301518,0.698482, 595 chr1 1430689 1430690 rs376219560 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 595 chr1 1430692 1430693 rs370573880 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 74.000000,4934.000000, 0.014776,0.985224, 595 chr1 1430696 1430697 rs373968684 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4931.000000,77.000000, 0.984625,0.015375, 595 chr1 1430707 1430708 rs370118521 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 595 chr1 1430724 1430725 rs112581151 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop,maf-5-all-pops 595 chr1 1430730 1430731 rs368537959 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 595 chr1 1430736 1430737 rs28394081 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1177.000000,3831.000000, 0.235024,0.764976, 595 chr1 1430970 1430971 rs147286181 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 7 1000GENOMES,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, 595 chr1 1430984 1430985 rs139902189 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 8 1000GENOMES,EVA-GONL,EXOME_CHIP,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4615.000000,393.000000, 0.921526,0.078474, 595 chr1 1431074 1431075 rs79205801 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,missense exact 1 4 1000GENOMES,EXOME_CHIP,NHLBI-ESP,SEATTLESEQ, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 595 chr1 1431108 1431109 rs144198445 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,missense exact 1 5 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 595 chr1 1431408 1431408 rs547026516 0 + - - -/G genomic insertion unknown 0 0 intron,ncRNA,untranslated-3 between 1 1 1000GENOMES, 2 -,G, 4898.000000,110.000000, 0.978035,0.021965, 595 chr1 1431501 1431502 rs8241 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 6 1000GENOMES,CGAP-GAI,EVA-GONL,LEE,SSMP,TISHKOFF, 2 A,G, 391.000000,4617.000000, 0.078075,0.921925, 595 chr1 1431708 1431709 rs146920074 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 595 chr1 1431806 1431807 rs2313133 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,TSC-CSHL, 2 C,G, 126.000000,4882.000000, 0.025160,0.974840, 595 chr1 1431811 1431812 rs368012105 0 + A A -/A genomic deletion unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,TISHKOFF, 2 -,A, 120.000000,4888.000000, 0.023962,0.976038, 595 chr1 1431877 1431878 rs147329358 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, 595 chr1 1431956 1431957 rs376972057 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, 595 chr1 1432047 1432048 rs147100804 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,PJP,SSMP, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 595 chr1 1432332 1432333 rs819985 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,GMI,KWOK,PJP,SSMP,TSC-CSHL, 2 C,T, 2164.000000,2844.000000, 0.432109,0.567891, 595 chr1 1432352 1432353 rs34621879 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,GMI,PJP,SSMP, 2 A,G, 1987.000000,3021.000000, 0.396765,0.603235, 595 chr1 1432484 1432485 rs111691241 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 G,T, 691.000000,4317.000000, 0.137979,0.862021, 595 chr1 1432967 1432968 rs140032600 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 595 chr1 1432985 1432986 rs4970454 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,GMI,PJP,WI_SSAHASNP, 2 C,G, 3718.000000,1290.000000, 0.742412,0.257588, 595 chr1 1433121 1433123 rs75035967 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 -,TG, 1531.000000,3477.000000, 0.305711,0.694289, 595 chr1 1433282 1433283 rs11486171 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,TISHKOFF, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 595 chr1 1433486 1433487 rs149124327 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 595 chr1 1433494 1433495 rs6688651 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,SSMP, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, 595 chr1 1433848 1433849 rs141178962 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 595 chr1 1433987 1433988 rs146962662 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, 595 chr1 1433995 1433996 rs819987 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,KWOK,SC_JCM, 2 C,T, 399.000000,4609.000000, 0.079673,0.920327, 595 chr1 1434050 1434051 rs192102992 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4951.000000,57.000000, 0.988618,0.011382, 595 chr1 1434239 1434240 rs112479096 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 595 chr1 1434348 1434349 rs377252484 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 -,T, 1420.000000,3588.000000, 0.283546,0.716454, 595 chr1 1434504 1434505 rs149434212 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, 595 chr1 1434583 1434584 rs144762725 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 595 chr1 1434718 1434719 rs111923050 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 586.000000,4422.000000, 0.117013,0.882987, 595 chr1 1434857 1434858 rs11488460 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SC_SNP, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 595 chr1 1434877 1434878 rs112516558 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP, 2 A,C, 135.000000,4873.000000, 0.026957,0.973043, 595 chr1 1434946 1434947 rs111976714 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 138.000000,4870.000000, 0.027556,0.972444, 595 chr1 1435004 1435005 rs143584911 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 595 chr1 1435262 1435263 rs189948263 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, 595 chr1 1435263 1435264 rs150834979 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 595 chr1 1435448 1435449 rs111457107 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 121.000000,4887.000000, 0.024161,0.975839, 595 chr1 1435523 1435524 rs186758134 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, 595 chr1 1435567 1435568 rs191535434 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 595 chr1 1435804 1435805 rs183795286 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4764.000000,244.000000, 0.951278,0.048722, 595 chr1 1435806 1435807 rs145549335 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, 595 chr1 1435878 1435879 rs532888249 0 + T T A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 100.000000,4908.000000, 0.019968,0.980032, 595 chr1 1435880 1435881 rs543549289 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 595 chr1 1435885 1435886 rs563226230 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, 595 chr1 1435887 1435888 rs528889980 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, 595 chr1 1435911 1435912 rs565657401 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 110.000000,4898.000000, 0.021965,0.978035, 595 chr1 1435912 1435913 rs528332590 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 595 chr1 1435938 1435939 rs147588481 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4875.000000,133.000000, 0.973442,0.026557, 595 chr1 1435971 1435973 rs201504712 0 + TT TT -/TT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,TT, 65.000000,4943.000000, 0.012979,0.987021, 595 chr1 1435984 1435984 rs374188904 0 + - - -/AT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,AT, 4854.000000,154.000000, 0.969249,0.030751, 595 chr1 1436058 1436059 rs28755011 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,EVA-GONL,SSAHASNP,SSMP, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 595 chr1 1436060 1436061 rs191108702 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 595 chr1 1436061 1436062 rs148195194 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4879.000000,129.000000, 0.974241,0.025759, 595 chr1 1436070 1436071 rs140589642 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 141.000000,4867.000000, 0.028155,0.971845, 595 chr1 1436098 1436099 rs150487231 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4014.000000,994.000000, 0.801518,0.198482, 595 chr1 1436104 1436105 rs113320106 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, 595 chr1 1436108 1436109 rs9439434 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 1877.000000,3131.000000, 0.374800,0.625200, 595 chr1 1436115 1436116 rs186823490 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 595 chr1 1436124 1436125 rs9439435 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,C, 2578.000000,2430.000000, 0.514776,0.485224, 595 chr1 1436534 1436535 rs75919850 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4078.000000,930.000000, 0.814297,0.185703, 595 chr1 1436640 1436640 rs528600925 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 2930.000000,2078.000000, 0.585064,0.414936, 595 chr1 1436719 1436720 rs185374100 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1437068 1437069 rs150793469 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 90.000000,4918.000000, 0.017971,0.982029, 595 chr1 1437069 1437070 rs139793547 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,G, 4895.000000,113.000000, 0.977436,0.022564, 595 chr1 1437249 1437250 rs201775921 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 114.000000,4894.000000, 0.022764,0.977236, 595 chr1 1437293 1437294 rs112904962 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4931.000000,77.000000, 0.984625,0.015375, 595 chr1 1437500 1437501 rs149699137 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 138.000000,4870.000000, 0.027556,0.972444, 595 chr1 1437600 1437600 rs377727458 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,T, 4518.000000,490.000000, 0.902156,0.097843, 595 chr1 1437604 1437605 rs145442616 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,T, 173.000000,4835.000000, 0.034545,0.965455, 595 chr1 1437680 1437681 rs148819757 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 595 chr1 1437876 1437877 rs186143160 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4566.000000,442.000000, 0.911741,0.088259, 595 chr1 1437886 1437887 rs79058850 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,C, 3118.000000,1890.000000, 0.622604,0.377396, 595 chr1 1438304 1438305 rs141467590 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4920.000000,88.000000, 0.982428,0.017572, 595 chr1 1438589 1438590 rs145086366 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, 595 chr1 1438801 1438802 rs150432721 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 595 chr1 1439570 1439571 rs149556302 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4881.000000,127.000000, 0.974641,0.025359, 595 chr1 1439670 1439671 rs12021879 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3843.000000,1165.000000, 0.767372,0.232628, 595 chr1 1440038 1440039 rs528083334 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4954.000000,54.000000, 0.989217,0.010783, 595 chr1 1440050 1440050 rs569959018 0 + - - -/AGAG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AGAG, 4827.000000,181.000000, 0.963858,0.036142, 595 chr1 1440396 1440397 rs151164024 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, 595 chr1 1440532 1440533 rs2313190 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TSC-CSHL, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 595 chr1 1440549 1440550 rs2313191 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF,TSC-CSHL, 2 C,T, 271.000000,4737.000000, 0.054113,0.945887, 595 chr1 1440603 1440604 rs201436830 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 -,G, 121.000000,4887.000000, 0.024161,0.975839, 595 chr1 1440735 1440736 rs376759794 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 595 chr1 1440737 1440747 rs199549503 0 + AAAGCCAGGT AAAGCCAGGT -/AAAGCCAGGT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,AAAGCCAGGT, 78.000000,4930.000000, 0.015575,0.984425, 595 chr1 1441241 1441242 rs113136151 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4915.000000,93.000000, 0.981430,0.018570, 595 chr1 1441627 1441629 rs200014517 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,AA, 93.000000,4915.000000, 0.018570,0.981430, 595 chr1 1441639 1441640 rs112924334 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, 596 chr1 1441868 1441869 rs146277939 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 54.000000,4954.000000, 0.010783,0.989217, 596 chr1 1442202 1442203 rs149297286 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, 596 chr1 1442704 1442705 rs143201014 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 4911.000000,97.000000, 0.980631,0.019369, 596 chr1 1442851 1442852 rs140649196 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 596 chr1 1442923 1442924 rs145355439 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 53.000000,4955.000000, 0.010583,0.989417, 596 chr1 1443528 1443529 rs59568290 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 4845.000000,163.000000, 0.967452,0.032548, 596 chr1 1443740 1443741 rs58506167 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, 596 chr1 1443982 1443983 rs9439437 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SC_SNP, 2 A,G, 4892.000000,116.000000, 0.976837,0.023163, 596 chr1 1444016 1444017 rs142419639 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, 596 chr1 1444071 1444072 rs557709835 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 152.000000,4856.000000, 0.030351,0.969649, 596 chr1 1444074 1444075 rs180974244 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, 596 chr1 1444075 1444076 rs536865809 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4857.000000,151.000000, 0.969848,0.030152, 596 chr1 1444085 1444086 rs185372545 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, 596 chr1 1444259 1444260 rs2767476 0 - A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_JCM,SC_SNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1444291 1444292 rs188684515 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4924.000000,84.000000, 0.983227,0.016773, 596 chr1 1444326 1444327 rs6659364 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4099.000000,909.000000, 0.818490,0.181510, 596 chr1 1444367 1444368 rs550953995 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, 596 chr1 1444368 1444369 rs567954607 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4839.000000,169.000000, 0.966254,0.033746, 596 chr1 1444541 1444542 rs28573899 0 + G G G/T genomic single by-cluster,by-frequency 0.031488 0.12146 intron exact 1 NonIntegerChromCount 2 CLINSEQ_SNP,SSAHASNP, 2 G,T, 310.944000,5.056000, 0.984000,0.016000, 596 chr1 1444592 1444593 rs146193895 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 596 chr1 1444619 1444620 rs148574217 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,CLINSEQ_SNP,EVA-GONL, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, 596 chr1 1444832 1444833 rs184033498 0 + C C A/C genomic single unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 A,C, 88.000000,4920.000000, 0.017572,0.982428, 596 chr1 1444835 1444836 rs188934216 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, 596 chr1 1444966 1444967 rs77510880 0 + G G G/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,ENSEMBL, 2 G,T, 4938.000000,70.000000, 0.986022,0.013978, 596 chr1 1444989 1444990 rs567321855 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, 596 chr1 1445156 1445157 rs529988376 0 + T T A/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 95.000000,4913.000000, 0.018970,0.981030, 596 chr1 1445213 1445217 rs367574096 0 + AGTG AGTG -/AGTG genomic deletion unknown 0 0 near-gene-3 range 1 3 1000GENOMES,SSIP,SSMP, 2 -,AGTG, 58.000000,4950.000000, 0.011582,0.988419, 596 chr1 1445273 1445274 rs191817663 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 165.000000,4843.000000, 0.032947,0.967053, 596 chr1 1445503 1445504 rs184986188 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, 596 chr1 1445826 1445827 rs185634529 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, 596 chr1 1445848 1445849 rs116272777 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, 596 chr1 1446220 1446221 rs113458856 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4560.000000,448.000000, 0.910543,0.089457, maf-5-some-pop,maf-5-all-pops 596 chr1 1446389 1446390 rs111509968 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop,maf-5-all-pops 596 chr1 1446735 1446736 rs78919759 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 596 chr1 1446928 1446929 rs115247282 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4777.000000,231.000000, 0.953874,0.046126, maf-5-some-pop,maf-5-all-pops 596 chr1 1446987 1446988 rs372783214 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 596 chr1 1447122 1447123 rs539585440 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 71.000000,4937.000000, 0.014177,0.985823, 596 chr1 1447226 1447227 rs116365928 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 267.000000,4741.000000, 0.053315,0.946685, maf-5-some-pop,maf-5-all-pops 596 chr1 1447324 1447325 rs6690515 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 2311.000000,2697.000000, 0.461462,0.538538, maf-5-some-pop,maf-5-all-pops 596 chr1 1447815 1447816 rs564012773 0 + G G A/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 596 chr1 1447999 1448000 rs545632949 0 + G G C/G genomic single unknown 0 0 intron,untranslated-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 115.000000,4893.000000, 0.022963,0.977037, 596 chr1 1448023 1448024 rs186807304 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, 596 chr1 1448099 1448100 rs143610735 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4844.000000,164.000000, 0.967252,0.032748, 596 chr1 1448547 1448548 rs2478796 0 - C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_JCM,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1449500 1449501 rs139049688 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 596 chr1 1449590 1449591 rs144094893 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,PJP,SSMP, 2 A,G, 3387.000000,1621.000000, 0.676318,0.323682, 596 chr1 1449655 1449656 rs367766386 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 84.000000,4924.000000, 0.016773,0.983227, 596 chr1 1449745 1449746 rs56037581 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,PJP,SSMP, 2 A,G, 3393.000000,1615.000000, 0.677516,0.322484, 596 chr1 1449943 1449944 rs74047253 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 596 chr1 1450289 1450290 rs115156185 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,maf-5-all-pops 596 chr1 1450623 1450624 rs150199746 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 137.000000,4871.000000, 0.027356,0.972644, 596 chr1 1450946 1450947 rs6669795 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 3443.000000,1565.000000, 0.687500,0.312500, maf-5-some-pop 596 chr1 1451207 1451208 rs112465899 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 596 chr1 1451379 1451380 rs9439458 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2358.000000,2650.000000, 0.470847,0.529153, maf-5-some-pop,maf-5-all-pops 596 chr1 1451489 1451490 rs9439460 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,NHLBI-ESP,SC_SNP,SSMP, 2 A,G, 1424.000000,3584.000000, 0.284345,0.715655, 596 chr1 1451520 1451521 rs2478793 0 - A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 2 1000GENOMES,SC_JCM, 4 A,C,G,T, 4986.000000,22.000000,22.000000,4986.000000, 0.497804,0.002196,0.002196,0.497804, 596 chr1 1451702 1451703 rs116453850 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 596 chr1 1451705 1451706 rs148015858 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 596 chr1 1451940 1451941 rs140982864 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, 596 chr1 1452722 1452723 rs145736326 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 596 chr1 1453175 1453176 rs202121361 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,TISHKOFF, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, 596 chr1 1453198 1453199 rs142266637 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,TISHKOFF, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, 596 chr1 1453372 1453373 rs7531221 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1447.000000,3561.000000, 0.288938,0.711062, maf-5-some-pop 596 chr1 1453491 1453492 rs114685401 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 596 chr1 1453664 1453665 rs10159033 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2674.000000,2334.000000, 0.533946,0.466054, 596 chr1 1453671 1453672 rs369016784 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 114.000000,4894.000000, 0.022764,0.977236, 596 chr1 1453672 1453676 rs149530233 0 + CACA CACA -/CACA genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,CACA, 324.000000,4684.000000, 0.064696,0.935304, 596 chr1 1453673 1453674 rs199936108 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,C, 4610.000000,398.000000, 0.920527,0.079473, 596 chr1 1453757 1453758 rs114442937 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop,maf-5-all-pops 596 chr1 1453920 1453921 rs10159041 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2242.000000,2766.000000, 0.447684,0.552316, maf-5-some-pop,maf-5-all-pops 596 chr1 1454068 1454069 rs12032157 0 + A A A/C genomic single by-frequency,by-1000genomes 0.19179 0.243129 intron exact 1 2 1000GENOMES,SC_SNP, 2 A,C, 108.000000,12.000000, 0.900000,0.100000, maf-5-some-pop,maf-5-all-pops 596 chr1 1454072 1454073 rs538419485 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4899.000000,109.000000, 0.978235,0.021765, 596 chr1 1454137 1454138 rs143003955 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 596 chr1 1454206 1454207 rs114928482 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,MPI_MOLGEN, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 596 chr1 1454271 1454272 rs10159059 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,ILLUMINA,NHLBI-ESP,PJP,SSMP,WUGSC_SSAHASNP, 2 A,T, 1053.000000,3955.000000, 0.210264,0.789736, maf-5-some-pop,maf-5-all-pops 596 chr1 1454411 1454412 rs200551287 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 596 chr1 1454518 1454519 rs370448805 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 161.000000,4847.000000, 0.032149,0.967851, 596 chr1 1455044 1455045 rs574628335 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 596 chr1 1455313 1455314 rs2015388 0 + T T G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3576.000000,1432.000000, 0.714058,0.285942, 596 chr1 1455317 1455318 rs2015387 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_SNP,SSMP,TSC-CSHL, 2 C,T, 3572.000000,1436.000000, 0.713259,0.286741, maf-5-some-pop 596 chr1 1455410 1455411 rs61189461 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 G,T, 111.000000,4897.000000, 0.022164,0.977835, 596 chr1 1455532 1455533 rs141500603 0 + G G A/G genomic single unknown 0 0 missense exact 1 5 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,NHLBI-ESP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 596 chr1 1455697 1455698 rs12065730 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SC_SNP, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 596 chr1 1455871 1455872 rs113751252 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 G,T, 4886.000000,122.000000, 0.975639,0.024361, 596 chr1 1456408 1456409 rs116644865 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 596 chr1 1456897 1456898 rs9439441 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1744.000000,3264.000000, 0.348243,0.651757, maf-5-some-pop,maf-5-all-pops 596 chr1 1456966 1456967 rs190735602 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 596 chr1 1457924 1457925 rs58447817 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, 596 chr1 1457927 1457928 rs61226390 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 596 chr1 1458030 1458031 rs114557796 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4864.000000,144.000000, 0.971246,0.028754, 596 chr1 1458031 1458032 rs12068889 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4667.000000,341.000000, 0.931909,0.068091, maf-5-some-pop,maf-5-all-pops 596 chr1 1458149 1458150 rs1135025 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,LEE,NHLBI-ESP,SSMP, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, 596 chr1 1458254 1458255 rs28675990 0 + T T G/T genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,EVA-GONL,SSAHASNP,SSMP, 2 G,T, 1195.000000,3813.000000, 0.238618,0.761382, 596 chr1 1458284 1458285 rs6675874 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 3333.000000,1675.000000, 0.665535,0.334465, maf-5-some-pop,maf-5-all-pops 596 chr1 1458389 1458390 rs180735117 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, 596 chr1 1458401 1458402 rs3813215 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,SC_SNP,SSMP,YUSUKE, 2 A,G, 3344.000000,1664.000000, 0.667732,0.332268, 596 chr1 1458566 1458567 rs3813216 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP,YUSUKE, 2 A,G, 3076.000000,1932.000000, 0.614217,0.385783, maf-5-some-pop 596 chr1 1458569 1458570 rs112988335 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 4651.000000,357.000000, 0.928714,0.071286, 596 chr1 1458856 1458857 rs549595412 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 59.000000,4949.000000, 0.011781,0.988219, 596 chr1 1458858 1458859 rs566127262 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4851.000000,157.000000, 0.968650,0.031350, 596 chr1 1458914 1458915 rs113107431 0 + C C C/T genomic single unknown 0 0 missense exact 1 6 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, 596 chr1 1458943 1458944 rs112145664 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop 596 chr1 1459106 1459107 rs113128965 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop,maf-5-all-pops 596 chr1 1459354 1459355 rs181195119 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 596 chr1 1459380 1459381 rs112892832 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,CLINSEQ_SNP,NHLBI-ESP,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 596 chr1 1459520 1459521 rs549472980 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, 596 chr1 1459581 1459582 rs74508282 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 1734.000000,3274.000000, 0.346246,0.653754, 596 chr1 1459898 1459899 rs575433086 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 596 chr1 1460043 1460044 rs371529763 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 2544.000000,2464.000000, 0.507987,0.492013, 596 chr1 1460129 1460130 rs530825854 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4901.000000,107.000000, 0.978634,0.021366, 596 chr1 1460256 1460257 rs6603789 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 4894.000000,114.000000, 0.977236,0.022764, 596 chr1 1460290 1460291 rs9329412 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 3861.000000,1147.000000, 0.770966,0.229034, 596 chr1 1460362 1460363 rs12403864 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 596 chr1 1460533 1460534 rs57871049 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,HGSV, 2 C,T, 106.000000,4902.000000, 0.021166,0.978834, 596 chr1 1460698 1460699 rs112308966 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop 596 chr1 1460793 1460794 rs573507106 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 1708.000000,3300.000000, 0.341054,0.658946, 596 chr1 1460905 1460906 rs10796394 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3611.000000,1397.000000, 0.721046,0.278954, 596 chr1 1460939 1460940 rs186798363 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 G,T, 75.000000,4933.000000, 0.014976,0.985024, 596 chr1 1460954 1460955 rs150267367 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 224.000000,4784.000000, 0.044728,0.955272, 596 chr1 1461040 1461041 rs192859203 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 596 chr1 1461465 1461466 rs6686506 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 4918.000000,90.000000, 0.982029,0.017971, 596 chr1 1461548 1461549 rs6684212 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3319.000000,1689.000000, 0.662740,0.337260, 596 chr1 1461832 1461833 rs186268381 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CLINSEQ_SNP,NHLBI-ESP,TISHKOFF, 2 C,G, 4900.000000,108.000000, 0.978435,0.021566, 596 chr1 1462360 1462361 rs571690918 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 596 chr1 1462765 1462766 rs9439462 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3245.000000,1763.000000, 0.647963,0.352037, maf-5-some-pop 596 chr1 1463030 1463031 rs75515030 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,NHLBI-ESP,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 596 chr1 1463156 1463157 rs78493114 0 + G G C/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 596 chr1 1463317 1463318 rs11260608 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1483.000000,3525.000000, 0.296126,0.703874, maf-5-some-pop 596 chr1 1463330 1463331 rs59025469 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 A,G, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 596 chr1 1463338 1463339 rs376072450 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,WARNICH_LAB, 2 -,T, 1531.000000,3477.000000, 0.305711,0.694289, 596 chr1 1463557 1463558 rs114845849 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 596 chr1 1463763 1463764 rs544147153 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 93.000000,4915.000000, 0.018570,0.981430, 596 chr1 1463768 1463769 rs529796095 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, 596 chr1 1463774 1463775 rs540330845 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4915.000000,93.000000, 0.981430,0.018570, 596 chr1 1463869 1463870 rs12035305 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, 596 chr1 1463892 1463893 rs112624192 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 123.000000,4885.000000, 0.024561,0.975439, 596 chr1 1463896 1463897 rs114369282 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 596 chr1 1464277 1464278 rs6691733 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, 596 chr1 1465340 1465341 rs72898205 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop,maf-5-all-pops 596 chr1 1465381 1465382 rs12032637 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3336.000000,1672.000000, 0.666134,0.333866, maf-5-some-pop 596 chr1 1465609 1465610 rs115990140 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 596 chr1 1465652 1465653 rs139538453 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1465688 1465688 rs202104317 0 + - - -/AGTC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AGTC, 4903.000000,105.000000, 0.979034,0.020967, 596 chr1 1465926 1465926 rs533162940 0 + - - -/TT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TT, 3389.000000,1619.000000, 0.676717,0.323283, 596 chr1 1465932 1465933 rs557883269 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1287.000000,3721.000000, 0.256989,0.743011, 596 chr1 1465934 1465935 rs566260464 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 3385.000000,1623.000000, 0.675919,0.324081, 596 chr1 1465937 1465938 rs543763499 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, 596 chr1 1465947 1465948 rs57442627 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,HGSV, 2 G,T, 3721.000000,1287.000000, 0.743011,0.256989, 596 chr1 1465964 1465965 rs558683508 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 1276.000000,3732.000000, 0.254792,0.745208, 596 chr1 1465974 1465975 rs542860097 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 3737.000000,1271.000000, 0.746206,0.253794, 596 chr1 1466064 1466065 rs59830143 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,SSMP, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, 596 chr1 1466065 1466066 rs189022728 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, 596 chr1 1466185 1466186 rs529182336 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1121.000000,3887.000000, 0.223842,0.776158, 596 chr1 1466186 1466187 rs549234185 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 3886.000000,1122.000000, 0.775958,0.224042, 596 chr1 1466195 1466196 rs534830246 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1121.000000,3887.000000, 0.223842,0.776158, 596 chr1 1466200 1466201 rs551805450 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 1122.000000,3886.000000, 0.224042,0.775958, 596 chr1 1466202 1466203 rs571560512 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 3886.000000,1122.000000, 0.775958,0.224042, 596 chr1 1466207 1466229 rs564016727 0 + CAAAAAAAAAAAAAAAAAAAAA CAAAAAAAAAAAAAAAAAAAAA -/CAAAAAAAAAAAAAAAAAAAAA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CAAAAAAAAAAAAAAAAAAAAA, 1658.000000,3350.000000, 0.331070,0.668930, 596 chr1 1466229 1466230 rs537492401 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 3350.000000,1658.000000, 0.668930,0.331070, 596 chr1 1466259 1466260 rs115729963 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 596 chr1 1466512 1466513 rs6670992 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 1472.000000,3536.000000, 0.293930,0.706070, maf-5-some-pop 596 chr1 1466521 1466522 rs6680787 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 3988.000000,1020.000000, 0.796326,0.203674, maf-5-some-pop,maf-5-all-pops 596 chr1 1466661 1466662 rs141337528 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 596 chr1 1466827 1466828 rs6683520 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3379.000000,1629.000000, 0.674720,0.325280, maf-5-some-pop 596 chr1 1466878 1466879 rs143365565 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, 596 chr1 1466968 1466969 rs112386508 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4520.000000,488.000000, 0.902556,0.097444, 596 chr1 1466980 1466981 rs6688404 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 3369.000000,1639.000000, 0.672724,0.327276, 596 chr1 1467321 1467322 rs79463926 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 G,T, 92.000000,4916.000000, 0.018371,0.981629, 596 chr1 1467484 1467485 rs1987191 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1631.000000,3377.000000, 0.325679,0.674321, maf-5-some-pop 596 chr1 1467557 1467558 rs4549982 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,HGSV,SC_JCM,TISHKOFF, 2 C,G, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 596 chr1 1467687 1467687 rs567868090 0 + - - -/GAGTGAGGAAATG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GAGTGAGGAAATG, 4902.000000,106.000000, 0.978834,0.021166, 596 chr1 1468124 1468125 rs148625800 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4882.000000,126.000000, 0.974840,0.025160, 596 chr1 1468177 1468178 rs6694994 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4106.000000,902.000000, 0.819888,0.180112, maf-5-some-pop 596 chr1 1468397 1468398 rs6695186 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1674.000000,3334.000000, 0.334265,0.665735, maf-5-some-pop,maf-5-all-pops 596 chr1 1468474 1468475 rs6677993 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,PJP,SC_SNP,SSMP, 2 A,G, 1629.000000,3379.000000, 0.325280,0.674720, 596 chr1 1468531 1468532 rs6680501 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,GMI,SSMP, 2 A,G, 1037.000000,3971.000000, 0.207069,0.792931, 596 chr1 1468557 1468558 rs6694773 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 3296.000000,1712.000000, 0.658147,0.341853, 596 chr1 1468632 1468633 rs6690064 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3378.000000,1630.000000, 0.674521,0.325479, maf-5-some-pop 596 chr1 1468966 1468967 rs9439445 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 596 chr1 1468980 1468981 rs59168450 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 A,T, 173.000000,4835.000000, 0.034545,0.965455, 596 chr1 1469033 1469034 rs2753291 0 - G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1469087 1469088 rs563525731 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4861.000000,147.000000, 0.970647,0.029353, 596 chr1 1469088 1469089 rs575747158 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, 596 chr1 1469089 1469090 rs541494563 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4861.000000,147.000000, 0.970647,0.029353, 596 chr1 1469133 1469134 rs148947529 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 2390.000000,2618.000000, 0.477236,0.522764, 596 chr1 1469220 1469221 rs6698376 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,SC_SNP,SI_EXO,SSMP, 2 C,T, 2319.000000,2689.000000, 0.463059,0.536941, 596 chr1 1469234 1469235 rs60473728 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,SSMP, 2 A,G, 762.000000,4246.000000, 0.152157,0.847843, 596 chr1 1469262 1469263 rs6681228 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,NHLBI-ESP,SC_SNP,SI_EXO,SSMP, 2 G,T, 3410.000000,1598.000000, 0.680911,0.319089, 596 chr1 1469288 1469289 rs28370384 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SI_EXO,SSAHASNP,SSMP, 2 C,G, 2473.000000,2535.000000, 0.493810,0.506190, maf-5-some-pop,maf-5-all-pops 596 chr1 1469471 1469472 rs115508211 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,G, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,maf-5-all-pops 596 chr1 1469596 1469596 rs200445422 0 + - - -/G genomic insertion unknown 0 0 untranslated-3 between 1 1 1000GENOMES, 2 -,G, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1469781 1469782 rs17161064 0 + G G C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SEQUENOM,SSMP, 2 C,G, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,maf-5-all-pops 596 chr1 1470160 1470161 rs75249696 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 596 chr1 1470293 1470293 rs5772044 0 + - - -/C genomic insertion unknown 0 0 intron,untranslated-3 between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 3964.000000,1044.000000, 0.791534,0.208466, 596 chr1 1470294 1470295 rs4994703 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,ABI, 2 C,T, 1522.000000,3486.000000, 0.303914,0.696086, 596 chr1 1470396 1470397 rs375304946 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, 596 chr1 1470397 1470398 rs7417423 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 4395.000000,613.000000, 0.877596,0.122404, 596 chr1 1470463 1470464 rs192637693 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, 596 chr1 1470806 1470807 rs146206869 0 + C C C/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 596 chr1 1471520 1471521 rs28425506 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 569.000000,4439.000000, 0.113618,0.886382, maf-5-some-pop 596 chr1 1471649 1471650 rs116391986 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 596 chr1 1472529 1472530 rs115016427 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 596 chr1 1472539 1472540 rs1571148 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3640.000000,1368.000000, 0.726837,0.273163, maf-5-some-pop,maf-5-all-pops 596 chr1 1472872 1472873 rs4259576 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3386.000000,1622.000000, 0.676118,0.323882, maf-5-some-pop,maf-5-all-pops 596 chr1 1473084 1473085 rs116702058 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop,maf-5-all-pops 596 chr1 1473184 1473185 rs58363239 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 504.000000,4504.000000, 0.100639,0.899361, maf-5-some-pop 596 chr1 1474037 1474038 rs79418273 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 596 chr1 1474303 1474304 rs1571150 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,C, 2600.000000,2408.000000, 0.519169,0.480831, maf-5-some-pop,maf-5-all-pops 596 chr1 1474870 1474871 rs9439465 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3499.000000,1509.000000, 0.698682,0.301318, maf-5-some-pop,maf-5-all-pops 596 chr1 1475601 1475602 rs542051122 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 153.000000,4855.000000, 0.030551,0.969449, 596 chr1 1475800 1475801 rs190482382 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,GMI, 2 C,T, 4679.000000,329.000000, 0.934305,0.065695, 596 chr1 1476136 1476137 rs144828034 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 596 chr1 1477158 1477159 rs144739836 0 - C C C/G genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1477323 1477325 rs3831113 0 + CA CA -/CA genomic deletion unknown 0 0 near-gene-5,untranslated-3 range 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,CA, 649.000000,4359.000000, 0.129593,0.870407, 596 chr1 1477577 1477578 rs41286746 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,NHLBI-ESP,SI_EXO, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1477659 1477660 rs11807706 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop 596 chr1 1478172 1478173 rs3766179 0 - C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 596 chr1 1478379 1478380 rs76756659 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 596 chr1 1478879 1478880 rs6665973 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,maf-5-all-pops 596 chr1 1478970 1478971 rs112703955 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,SSMP, 2 G,T, 4592.000000,416.000000, 0.916933,0.083067, 596 chr1 1479081 1479082 rs192730094 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 3393.000000,1615.000000, 0.677516,0.322484, 596 chr1 1479147 1479148 rs528167372 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4942.000000,66.000000, 0.986821,0.013179, 596 chr1 1479450 1479451 rs111570453 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 596 chr1 1479581 1479582 rs114557535 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 596 chr1 1479788 1479789 rs142419647 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 106.000000,4902.000000, 0.021166,0.978834, 596 chr1 1480084 1480085 rs11806797 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4541.000000,467.000000, 0.906749,0.093251, maf-5-some-pop,maf-5-all-pops 596 chr1 1480225 1480226 rs116703397 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4649.000000,359.000000, 0.928315,0.071685, maf-5-some-pop 596 chr1 1480984 1480985 rs144854442 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 596 chr1 1481017 1481018 rs144732318 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 105.000000,4903.000000, 0.020967,0.979034, 596 chr1 1482153 1482154 rs117505867 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, 596 chr1 1482169 1482170 rs140369870 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 596 chr1 1482272 1482273 rs12084237 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SC_SNP,TISHKOFF, 2 A,G, 1040.000000,3968.000000, 0.207668,0.792332, 596 chr1 1482279 1482280 rs572195418 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4220.000000,788.000000, 0.842652,0.157348, 596 chr1 1482280 1482281 rs541200841 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 788.000000,4220.000000, 0.157348,0.842652, 596 chr1 1482281 1482282 rs564457965 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4220.000000,788.000000, 0.842652,0.157348, 596 chr1 1482282 1482283 rs537220127 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSIP, 2 A,G, 4220.000000,788.000000, 0.842652,0.157348, 596 chr1 1482341 1482342 rs111509594 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 711.000000,4297.000000, 0.141973,0.858027, 596 chr1 1482576 1482577 rs75265293 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 596 chr1 1482837 1482838 rs12045013 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4352.000000,656.000000, 0.869010,0.130990, maf-5-some-pop 596 chr1 1483009 1483010 rs7517401 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3410.000000,1598.000000, 0.680911,0.319089, maf-5-some-pop,maf-5-all-pops 596 chr1 1483054 1483055 rs74864943 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 596 chr1 1483275 1483276 rs12085735 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop,maf-5-all-pops 596 chr1 1483732 1483733 rs147320830 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 360.000000,4648.000000, 0.071885,0.928115, 596 chr1 1483877 1483878 rs115674913 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 596 chr1 1484461 1484462 rs77658544 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop 596 chr1 1484805 1484806 rs150014561 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4648.000000,360.000000, 0.928115,0.071885, 596 chr1 1484854 1484855 rs11807874 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 596 chr1 1484921 1484922 rs61594194 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop 596 chr1 1484969 1484970 rs7515814 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1479.000000,3529.000000, 0.295327,0.704673, 596 chr1 1485346 1485347 rs7516190 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 2789.000000,2219.000000, 0.556909,0.443091, 596 chr1 1485483 1485484 rs142142110 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4903.000000,105.000000, 0.979034,0.020967, 596 chr1 1486781 1486782 rs114370906 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 596 chr1 1486938 1486939 rs3766175 0 - A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BUSHMAN,GMI,HGSV,SSMP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1487042 1487043 rs74511912 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 596 chr1 1487231 1487232 rs115414524 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 596 chr1 1487495 1487496 rs72634805 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 596 chr1 1487524 1487525 rs3766173 0 - C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 596 chr1 1488379 1488380 rs12408062 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 443.000000,4565.000000, 0.088459,0.911542, 596 chr1 1488398 1488399 rs561625712 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 2653.000000,2355.000000, 0.529752,0.470248, 596 chr1 1488582 1488583 rs6603790 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 596 chr1 1488999 1489006 rs544089233 0 + AAAAAAA AAAAAAA -/AAAAAAA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AAAAAAA, 3339.000000,1669.000000, 0.666733,0.333267, 596 chr1 1489071 1489072 rs3930748 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1463.000000,3545.000000, 0.292133,0.707867, 596 chr1 1489620 1489621 rs11590038 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2306.000000,2702.000000, 0.460463,0.539537, maf-5-some-pop,maf-5-all-pops 596 chr1 1489625 1489626 rs11588893 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 2613.000000,2395.000000, 0.521765,0.478235, maf-5-some-pop,maf-5-all-pops 596 chr1 1489669 1489670 rs7531530 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 C,T, 2102.000000,2906.000000, 0.419728,0.580272, maf-5-some-pop,maf-5-all-pops 596 chr1 1489705 1489706 rs142063993 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,WARNICH_LAB, 2 A,G, 717.000000,4291.000000, 0.143171,0.856829, 596 chr1 1489729 1489730 rs12408695 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 442.000000,4566.000000, 0.088259,0.911741, 596 chr1 1490070 1490071 rs150797936 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 596 chr1 1490073 1490074 rs7366635 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops 596 chr1 1490547 1490548 rs78064294 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 596 chr1 1490626 1490627 rs3753330 0 - T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 596 chr1 1491250 1491251 rs12048706 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3017.000000,1991.000000, 0.602436,0.397564, maf-5-some-pop,maf-5-all-pops 596 chr1 1491445 1491446 rs147806232 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 596 chr1 1491583 1491584 rs148817889 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 596 chr1 1491943 1491944 rs77860100 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 596 chr1 1492096 1492096 rs532886150 0 + - - -/G genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,G, 4953.000000,55.000000, 0.989018,0.010982, 596 chr1 1492525 1492526 rs4320726 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 4512.000000,496.000000, 0.900958,0.099041, maf-5-some-pop 596 chr1 1492740 1492741 rs58599626 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4834.000000,174.000000, 0.965256,0.034744, 596 chr1 1493746 1493747 rs880050 0 - C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,CSHL-HAPMAP,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 596 chr1 1494908 1494909 rs116966682 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 596 chr1 1495082 1495083 rs6667347 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3398.000000,1610.000000, 0.678514,0.321486, 596 chr1 1495258 1495259 rs61774864 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 596 chr1 1495625 1495626 rs78755737 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 596 chr1 1496144 1496145 rs12410854 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3340.000000,1668.000000, 0.666933,0.333067, maf-5-some-pop,maf-5-all-pops 596 chr1 1496363 1496364 rs114110867 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 596 chr1 1496515 1496516 rs150545133 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 596 chr1 1496640 1496641 rs146876336 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 G,T, 120.000000,4888.000000, 0.023962,0.976038, 596 chr1 1497641 1497645 rs148029734 0 + TTTC TTTC -/TTTC genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,TTTC, 3340.000000,1668.000000, 0.666933,0.333067, 596 chr1 1499178 1499179 rs61350344 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 G,T, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 596 chr1 1499297 1499298 rs9439468 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1463.000000,3545.000000, 0.292133,0.707867, maf-5-some-pop 596 chr1 1499523 1499524 rs115930122 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4918.000000,90.000000, 0.982029,0.017971, 596 chr1 1500485 1500502 rs141720989 0 + AAGGCAGGCGGATCATG AAGGCAGGCGGATCATG -/AAGGCAGGCGGATCATG genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AAGGCAGGCGGATCATG, 2143.000000,2865.000000, 0.427915,0.572085, 596 chr1 1500940 1500941 rs6603791 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1464.000000,3544.000000, 0.292332,0.707668, maf-5-some-pop,maf-5-all-pops 596 chr1 1501063 1501064 rs6656541 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3544.000000,1464.000000, 0.707668,0.292332, maf-5-some-pop,maf-5-all-pops 596 chr1 1501088 1501089 rs77167259 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 596 chr1 1501181 1501182 rs79225965 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop 596 chr1 1501465 1501466 rs7543799 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3559.000000,1449.000000, 0.710663,0.289337, maf-5-some-pop,maf-5-all-pops 596 chr1 1501479 1501485 rs201655463 0 + AAAAAA AAAAAA -/AAAAAA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,AAAAAA, 653.000000,4355.000000, 0.130391,0.869609, 596 chr1 1501655 1501655 rs200937604 0 + - - -/A genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 4906.000000,102.000000, 0.979633,0.020367, 596 chr1 1501796 1501803 rs140986351 0 + CAGGGCG CAGGGCG -/CAGGGCG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CAGGGCG, 59.000000,4949.000000, 0.011781,0.988219, 596 chr1 1501995 1501996 rs141654613 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, 596 chr1 1502141 1502142 rs147023978 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 596 chr1 1502750 1502751 rs116642201 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 596 chr1 1503035 1503036 rs60445846 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 596 chr1 1503094 1503095 rs7367692 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3545.000000,1463.000000, 0.707867,0.292133, 596 chr1 1503098 1503099 rs7364711 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1463.000000,3545.000000, 0.292133,0.707867, 596 chr1 1503248 1503249 rs139075034 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, 596 chr1 1503649 1503650 rs74045618 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,T, 4950.000000,58.000000, 0.988419,0.011582, 596 chr1 1503807 1503808 rs11578409 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 3316.000000,1692.000000, 0.662141,0.337859, maf-5-some-pop,maf-5-all-pops 596 chr1 1503927 1503928 rs7550471 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 3398.000000,1610.000000, 0.678514,0.321486, maf-5-some-pop,maf-5-all-pops 596 chr1 1504670 1504671 rs80216842 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 445.000000,4563.000000, 0.088858,0.911142, maf-5-some-pop 596 chr1 1505040 1505041 rs6603792 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3434.000000,1574.000000, 0.685703,0.314297, maf-5-some-pop,maf-5-all-pops 596 chr1 1505215 1505219 rs78104724 0 + AGCT AGCT -/AGCT genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,AGCT, 649.000000,4359.000000, 0.129593,0.870407, 596 chr1 1505254 1505255 rs6603793 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1464.000000,3544.000000, 0.292332,0.707668, maf-5-some-pop,maf-5-all-pops 596 chr1 1505966 1505967 rs7548959 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1618.000000,3390.000000, 0.323083,0.676917, maf-5-some-pop,maf-5-all-pops 596 chr1 1506117 1506118 rs118064867 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 596 chr1 1506814 1506814 rs560900322 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 1700.000000,3308.000000, 0.339457,0.660543, 596 chr1 1507161 1507162 rs116210771 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 85.000000,4923.000000, 0.016973,0.983027, 596 chr1 1507174 1507174 rs71578326 0 + - - -/T genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 1580.000000,3428.000000, 0.315495,0.684505, 596 chr1 1507328 1507329 rs11801333 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop,maf-5-all-pops 596 chr1 1507365 1507366 rs9439469 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2751.000000,2257.000000, 0.549321,0.450679, 596 chr1 1507664 1507665 rs569726044 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 596 chr1 1507911 1507912 rs61774865 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 1463.000000,3545.000000, 0.292133,0.707867, 596 chr1 1508330 1508331 rs116720752 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop 596 chr1 1508645 1508647 rs538824620 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AA, 507.000000,4501.000000, 0.101238,0.898762, 596 chr1 1508741 1508742 rs114925670 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4510.000000,498.000000, 0.900559,0.099441, maf-5-some-pop 596 chr1 1508809 1508827 rs56930035 0 + AAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAA -/AAAAAAAAAAAAAAAAAA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI, 2 -,AAAAAAAAAAAAAAAAAA, 5008.000000,0.000000, 1.000000,0.000000, 596 chr1 1508822 1508823 rs571938179 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 2065.000000,2943.000000, 0.412340,0.587660, 596 chr1 1509033 1509034 rs7520996 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3496.000000,1512.000000, 0.698083,0.301917, maf-5-some-pop,maf-5-all-pops 596 chr1 1509155 1509156 rs7518083 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 3530.000000,1478.000000, 0.704872,0.295128, maf-5-some-pop,maf-5-all-pops 596 chr1 1509412 1509415 rs33918586 0 + AAG AAG -/AAG genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,ABI,GMI,HGSV,PJP,SSMP, 2 -,AAG, 3495.000000,1513.000000, 0.697883,0.302117, 596 chr1 1509824 1509825 rs6666293 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SSMP, 2 A,G, 1496.000000,3512.000000, 0.298722,0.701278, maf-5-some-pop,maf-5-all-pops 596 chr1 1510035 1510037 rs150737039 0 + GC GC -/GC genomic deletion unknown 0 0 untranslated-5 range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,GC, 3350.000000,1658.000000, 0.668930,0.331070, 596 chr1 1510723 1510724 rs77661767 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 596 chr1 1510800 1510801 rs7519837 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1524.000000,3484.000000, 0.304313,0.695687, maf-5-some-pop,maf-5-all-pops 596 chr1 1511103 1511104 rs7556282 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3482.000000,1526.000000, 0.695288,0.304712, maf-5-some-pop,maf-5-all-pops 596 chr1 1511243 1511244 rs4590622 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3446.000000,1562.000000, 0.688099,0.311901, 596 chr1 1511314 1511315 rs4618908 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3494.000000,1514.000000, 0.697684,0.302316, 596 chr1 1511836 1511837 rs11802492 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 4643.000000,365.000000, 0.927117,0.072883, maf-5-some-pop 596 chr1 1511878 1511882 rs201674002 0 + TCTT TCTT -/TCTT genomic deletion unknown 0 0 near-gene-5 range 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,TCTT, 87.000000,4921.000000, 0.017372,0.982628, 596 chr1 1511983 1511984 rs12063496 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1512074 1512075 rs12069849 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1512884 1512885 rs114517777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1513088 1513089 rs115196554 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1513116 1513117 rs72895993 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 596 chr1 1513282 1513283 rs144752615 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1513285 1513286 rs148503044 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1513563 1513564 rs74890761 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1513692 1513693 rs75315239 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop 596 chr1 1513720 1513721 rs115244977 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1513751 1513752 rs79429982 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4574.000000,434.000000, 0.913339,0.086661, maf-5-some-pop 596 chr1 1514013 1514014 rs77689498 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1514094 1514095 rs72895996 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop 596 chr1 1514097 1514098 rs72895999 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop 596 chr1 1514182 1514183 rs72634807 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 596 chr1 1514258 1514259 rs9331750 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4187.000000,821.000000, 0.836062,0.163938, maf-5-some-pop,maf-5-all-pops 596 chr1 1514377 1514378 rs150110111 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1514385 1514386 rs145537882 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1514494 1514495 rs115372566 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 596 chr1 1514571 1514572 rs115570611 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 596 chr1 1514682 1514683 rs115452188 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1514703 1514704 rs114279111 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1514790 1514791 rs553975291 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 3240.000000,1768.000000, 0.646965,0.353035, 596 chr1 1514835 1514836 rs188337890 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1514879 1514880 rs146933721 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1514963 1514964 rs114846135 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1515096 1515097 rs9331751 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,T, 1596.000000,3412.000000, 0.318690,0.681310, maf-5-some-pop,maf-5-all-pops 596 chr1 1515689 1515690 rs191138129 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,T, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1515896 1515897 rs543151632 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 596 chr1 1515900 1515901 rs553455102 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 596 chr1 1515947 1515948 rs142119085 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,PJP,SSMP, 2 A,G, 644.000000,4364.000000, 0.128594,0.871406, 596 chr1 1516008 1516009 rs561335940 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1516010 1516011 rs530187077 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1516015 1516016 rs561113106 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4945.000000,63.000000, 0.987420,0.012580, 596 chr1 1516024 1516025 rs181277279 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 596 chr1 1516098 1516099 rs550809089 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 596 chr1 1516169 1516170 rs61774866 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCMHGSC_JDW,SSMP, 2 A,T, 4950.000000,58.000000, 0.988419,0.011582, 596 chr1 1516180 1516181 rs573403184 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 596 chr1 1516250 1516251 rs528621545 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 596 chr1 1516667 1516668 rs116579874 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 596 chr1 1517617 1517618 rs140201179 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 455.000000,4553.000000, 0.090855,0.909145, 596 chr1 1517935 1517936 rs75989426 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 658.000000,4350.000000, 0.131390,0.868610, maf-5-some-pop,maf-5-all-pops 596 chr1 1518245 1518246 rs112375532 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 596 chr1 1518248 1518249 rs149400578 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 596 chr1 1518372 1518372 rs71266535 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 4193.000000,815.000000, 0.837260,0.162740, 596 chr1 1518826 1518826 rs112925944 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 3965.000000,1043.000000, 0.791733,0.208267, 596 chr1 1518868 1518869 rs80346239 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 596 chr1 1518970 1518971 rs116801180 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 85.000000,4923.000000, 0.016973,0.983027, 596 chr1 1519204 1519205 rs28502603 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSAHASNP,SSMP, 2 C,T, 99.000000,4909.000000, 0.019768,0.980232, 596 chr1 1519646 1519647 rs145042579 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 596 chr1 1519699 1519700 rs138911949 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4822.000000,186.000000, 0.962859,0.037141, 596 chr1 1519921 1519921 rs148814376 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,T, 4905.000000,103.000000, 0.979433,0.020567, 596 chr1 1520472 1520473 rs147164811 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 64.000000,4944.000000, 0.012780,0.987220, 596 chr1 1520552 1520553 rs78721465 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4327.000000,681.000000, 0.864018,0.135982, maf-5-some-pop,maf-5-all-pops 596 chr1 1520670 1520674 rs143966177 0 + TTTG TTTG -/TTTG genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TTTG, 1453.000000,3555.000000, 0.290136,0.709864, 596 chr1 1520724 1520725 rs28788874 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3937.000000,1071.000000, 0.786142,0.213858, 596 chr1 1520751 1520752 rs75111672 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 784.000000,4224.000000, 0.156550,0.843450, 596 chr1 1520873 1520874 rs190693142 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 596 chr1 1521027 1521029 rs370478467 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSIP,SSMP, 2 -,AG, 86.000000,4922.000000, 0.017173,0.982827, 596 chr1 1521355 1521356 rs28361555 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSAHASNP, 2 A,T, 266.000000,4742.000000, 0.053115,0.946885, 596 chr1 1521370 1521371 rs28380252 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSAHASNP,SSMP, 2 A,G, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop 596 chr1 1521804 1521805 rs4648786 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3623.000000,1385.000000, 0.723442,0.276558, maf-5-some-pop,maf-5-all-pops 596 chr1 1521936 1521937 rs138229775 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 596 chr1 1522005 1522006 rs4648787 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3627.000000,1381.000000, 0.724241,0.275759, 596 chr1 1522015 1522016 rs140373031 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 596 chr1 1522025 1522025 rs538895595 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 4802.000000,206.000000, 0.958866,0.041134, 596 chr1 1522058 1522059 rs4648612 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3654.000000,1354.000000, 0.729633,0.270367, 596 chr1 1522078 1522079 rs150754672 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 596 chr1 1522082 1522083 rs564495927 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, 596 chr1 1522178 1522186 rs142904204 0 + AAAAGTAA AAAAGTAA -/AAAAGTAA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,AAAAGTAA, 61.000000,4947.000000, 0.012180,0.987819, 596 chr1 1522335 1522336 rs4648613 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1287.000000,3721.000000, 0.256989,0.743011, maf-5-some-pop,maf-5-all-pops 596 chr1 1522341 1522342 rs61774868 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 3915.000000,1093.000000, 0.781749,0.218251, maf-5-some-pop,maf-5-all-pops 596 chr1 1522366 1522367 rs28809773 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 1282.000000,3726.000000, 0.255990,0.744010, 596 chr1 1522461 1522462 rs146852187 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, 596 chr1 1522547 1522548 rs115734204 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 596 chr1 1522602 1522603 rs572266445 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 548.000000,4460.000000, 0.109425,0.890575, 596 chr1 1522731 1522732 rs4366263 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,PJP,SC_JCM,SSAHASNP,SSMP, 2 A,G, 3622.000000,1386.000000, 0.723243,0.276757, 596 chr1 1522777 1522777 rs112503950 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,SSMP, 2 -,T, 3644.000000,1364.000000, 0.727636,0.272364, 596 chr1 1522792 1522793 rs28778974 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSAHASNP, 2 C,T, 3654.000000,1354.000000, 0.729633,0.270367, 596 chr1 1522822 1522823 rs192014465 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 85.000000,4923.000000, 0.016973,0.983027, 596 chr1 1522926 1522927 rs61774869 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4092.000000,916.000000, 0.817093,0.182907, 596 chr1 1522991 1522992 rs185705614 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 596 chr1 1522992 1522993 rs188101806 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 596 chr1 1523133 1523134 rs111712995 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 G,T, 248.000000,4760.000000, 0.049521,0.950479, 596 chr1 1523274 1523275 rs138164787 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, 596 chr1 1523438 1523439 rs9725077 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 4174.000000,834.000000, 0.833466,0.166534, 596 chr1 1523521 1523522 rs576026843 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 1166.000000,3842.000000, 0.232827,0.767173, 596 chr1 1523600 1523601 rs558786936 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,SSIP, 2 -,T, 1580.000000,3428.000000, 0.315495,0.684505, 596 chr1 1523831 1523831 rs564683632 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1524080 1524081 rs78798302 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop 596 chr1 1524259 1524260 rs72897823 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop,maf-5-all-pops 596 chr1 1524415 1524416 rs148440037 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4926.000000,82.000000, 0.983626,0.016374, 596 chr1 1524530 1524531 rs72634809 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,TISHKOFF, 2 C,T, 3900.000000,1108.000000, 0.778754,0.221246, maf-5-some-pop,maf-5-all-pops 596 chr1 1524798 1524798 rs532667851 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 2470.000000,2538.000000, 0.493211,0.506789, 596 chr1 1524875 1524878 rs374728883 0 + TTT TTT -/TTT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BILGI_BIOE,EVA-GONL,SSMP, 2 -,TTT, 874.000000,4134.000000, 0.174521,0.825479, 596 chr1 1524997 1524998 rs112512195 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4280.000000,728.000000, 0.854633,0.145367, 596 chr1 1525174 1525175 rs78922579 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop,maf-5-all-pops 596 chr1 1525403 1525404 rs78746457 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4744.000000,264.000000, 0.947284,0.052716, maf-5-some-pop 596 chr1 1525436 1525437 rs61774870 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 596 chr1 1525623 1525624 rs75478986 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 265.000000,4743.000000, 0.052915,0.947085, 596 chr1 1526145 1526146 rs148285438 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,T, 4947.000000,61.000000, 0.987819,0.012180, 596 chr1 1526172 1526173 rs142471794 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, 596 chr1 1526230 1526231 rs115220465 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 596 chr1 1526269 1526270 rs28414855 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP, 2 G,T, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop,maf-5-all-pops 596 chr1 1526667 1526668 rs146390386 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4551.000000,457.000000, 0.908746,0.091254, 596 chr1 1526798 1526799 rs12735276 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1501.000000,3507.000000, 0.299720,0.700280, 596 chr1 1527082 1527083 rs10157140 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 1685.000000,3323.000000, 0.336462,0.663538, maf-5-some-pop,maf-5-all-pops 596 chr1 1527951 1527952 rs113212351 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 756.000000,4252.000000, 0.150958,0.849042, maf-5-some-pop,maf-5-all-pops 596 chr1 1528270 1528271 rs192512328 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4901.000000,107.000000, 0.978634,0.021366, 596 chr1 1528343 1528344 rs139743360 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, 596 chr1 1528654 1528655 rs70954005 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,PJP,SSMP, 2 -,A, 3937.000000,1071.000000, 0.786142,0.213858, 596 chr1 1528999 1529000 rs12725297 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop,maf-5-all-pops 596 chr1 1529111 1529112 rs12725449 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2206.000000,2802.000000, 0.440495,0.559505, maf-5-some-pop,maf-5-all-pops 596 chr1 1529456 1529457 rs28566709 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1462.000000,3546.000000, 0.291933,0.708067, maf-5-some-pop,maf-5-all-pops 596 chr1 1529510 1529511 rs28662991 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 596 chr1 1529656 1529657 rs76819762 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 596 chr1 1529949 1529950 rs28503881 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop,maf-5-all-pops 596 chr1 1529978 1529979 rs4648788 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3989.000000,1019.000000, 0.796526,0.203474, maf-5-some-pop 596 chr1 1529993 1529994 rs72634811 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 741.000000,4267.000000, 0.147963,0.852037, maf-5-some-pop,maf-5-all-pops 596 chr1 1529997 1529998 rs28689700 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,G, 2433.000000,2575.000000, 0.485823,0.514177, maf-5-some-pop,maf-5-all-pops 596 chr1 1530199 1530200 rs4648790 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SSAHASNP,WI_SSAHASNP, 2 C,T, 3527.000000,1481.000000, 0.704273,0.295727, maf-5-some-pop,maf-5-all-pops 596 chr1 1530264 1530264 rs552553234 0 + - - -/AGAC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AGAC, 2769.000000,2239.000000, 0.552915,0.447085, 596 chr1 1530375 1530375 rs144972405 0 + - - -/GAGACA genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,BILGI_BIOE, 2 -,GAGACA, 2203.000000,2805.000000, 0.439896,0.560104, 596 chr1 1530386 1530387 rs200599667 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 3759.000000,1249.000000, 0.750599,0.249401, 596 chr1 1530408 1530408 rs147873861 0 + - - -/AG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,BILGI_BIOE, 2 -,AG, 3947.000000,1061.000000, 0.788139,0.211861, 596 chr1 1530494 1530500 rs140463034 0 + AGAGAG AGAGAG -/AGAGAG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,GMI, 2 -,AGAGAG, 1138.000000,3870.000000, 0.227236,0.772764, 596 chr1 1530500 1530500 rs565910309 0 + - - -/AG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AG, 3260.000000,1748.000000, 0.650958,0.349042, 596 chr1 1530694 1530698 rs536467678 0 + AGAC AGAC -/AGAC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AGAC, 105.000000,4903.000000, 0.020967,0.979034, 596 chr1 1530745 1530746 rs111203454 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,GMI,MPI_MOLGEN, 2 C,G, 1119.000000,3889.000000, 0.223442,0.776558, 596 chr1 1531082 1531082 rs536699154 0 + - - -/AG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AG, 3662.000000,1346.000000, 0.731230,0.268770, 596 chr1 1531119 1531120 rs576935732 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 170.000000,4838.000000, 0.033946,0.966054, 596 chr1 1531120 1531120 rs149167427 0 + - - -/AGAGAGAC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AGAGAGAC, 4212.000000,796.000000, 0.841054,0.158946, 596 chr1 1531152 1531158 rs139903589 0 + ACAGAG ACAGAG -/ACAGAG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,GMI, 2 -,ACAGAG, 1535.000000,3473.000000, 0.306510,0.693490, 596 chr1 1531276 1531276 rs144728661 0 + - - -/AGAC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,BILGI_BIOE, 2 -,AGAC, 2654.000000,2354.000000, 0.529952,0.470048, 596 chr1 1531336 1531336 rs575006234 0 + - - -/AG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AG, 4768.000000,240.000000, 0.952077,0.047923, 596 chr1 1531523 1531524 rs62649424 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 C,G, 234.000000,4774.000000, 0.046725,0.953275, 596 chr1 1531524 1531528 rs138723816 0 + AGAC AGAC -/AGAC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 -,AGAC, 813.000000,4195.000000, 0.162340,0.837660, 596 chr1 1531542 1531545 rs142050584 0 + AGC AGC -/AGC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,SSMP, 2 -,AGC, 1190.000000,3818.000000, 0.237620,0.762380, 596 chr1 1531642 1531642 rs546987357 0 + - - -/ACAGAG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,ACAGAG, 4732.000000,276.000000, 0.944888,0.055112, 596 chr1 1531824 1531830 rs536114812 0 + AGAGGC AGAGGC -/AGAGGC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AGAGGC, 61.000000,4947.000000, 0.012180,0.987819, 596 chr1 1531828 1531829 rs111063478 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,GMI, 2 A,G, 1543.000000,3465.000000, 0.308107,0.691893, maf-5-some-pop,maf-5-all-pops 596 chr1 1531908 1531909 rs111203458 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 3466.000000,1542.000000, 0.692093,0.307907, 596 chr1 1531970 1531972 rs141844183 0 + AC AC -/AC genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,WARNICH_LAB, 2 -,AC, 1323.000000,3685.000000, 0.264177,0.735823, 596 chr1 1532261 1532262 rs28569178 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 903.000000,4105.000000, 0.180312,0.819688, maf-5-some-pop 596 chr1 1532332 1532333 rs115151997 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 596 chr1 1532386 1532387 rs79466158 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 266.000000,4742.000000, 0.053115,0.946885, maf-5-some-pop 596 chr1 1532508 1532508 rs113040564 0 + - - -/CCTCAGCTGGACTCCTCAGCTGGA genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,CCTCAGCTGGACTCCTCAGCTGGA, 2078.000000,2930.000000, 0.414936,0.585064, 596 chr1 1532549 1532550 rs74045671 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 596 chr1 1532841 1532842 rs111860503 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4280.000000,728.000000, 0.854633,0.145367, maf-5-some-pop,maf-5-all-pops 596 chr1 1533140 1533141 rs28694168 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSAHASNP,SSMP, 2 C,T, 259.000000,4749.000000, 0.051717,0.948283, 596 chr1 1533478 1533479 rs28737320 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4301.000000,707.000000, 0.858826,0.141174, maf-5-some-pop 596 chr1 1533635 1533636 rs74045672 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,C, 4950.000000,58.000000, 0.988419,0.011582, 596 chr1 1533722 1533723 rs117780949 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,SSMP, 2 G,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 596 chr1 1533723 1533724 rs117967494 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,SSMP, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 596 chr1 1533756 1533757 rs112416351 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, 596 chr1 1534322 1534324 rs556796187 0 + CA CA -/CA genomic deletion unknown 0 0 untranslated-3 range 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,CA, 86.000000,4922.000000, 0.017173,0.982827, 596 chr1 1534577 1534578 rs150318276 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,G, 102.000000,4906.000000, 0.020367,0.979633, 596 chr1 1534709 1534710 rs79079518 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop,maf-5-all-pops 596 chr1 1535584 1535585 rs112683308 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,BCM-HGSC-SUB, 2 C,G, 4826.000000,182.000000, 0.963658,0.036342, 596 chr1 1535699 1535700 rs116788278 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BL,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 3659.000000,1349.000000, 0.730631,0.269369, maf-5-some-pop,maf-5-all-pops 596 chr1 1535758 1535759 rs72897847 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 3631.000000,1377.000000, 0.725040,0.274960, maf-5-some-pop,maf-5-all-pops 596 chr1 1535815 1535816 rs544915764 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 596 chr1 1535890 1535891 rs192264973 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,C, 102.000000,4906.000000, 0.020367,0.979633, 596 chr1 1535970 1535971 rs144973948 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 596 chr1 1536025 1536026 rs143033135 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 78.000000,4930.000000, 0.015575,0.984425, 596 chr1 1536039 1536040 rs184806076 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 596 chr1 1536366 1536367 rs74045673 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 596 chr1 1536993 1536994 rs149337626 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 71.000000,4937.000000, 0.014177,0.985823, 596 chr1 1537838 1537841 rs142785623 0 + AGC AGC -/AGC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,AGC, 55.000000,4953.000000, 0.010982,0.989018, 596 chr1 1537886 1537887 rs72634813 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 726.000000,4282.000000, 0.144968,0.855032, maf-5-some-pop 596 chr1 1538045 1538046 rs72634814 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 696.000000,4312.000000, 0.138978,0.861022, maf-5-some-pop,maf-5-all-pops 596 chr1 1538517 1538518 rs28503729 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,G, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop,maf-5-all-pops 596 chr1 1539648 1539649 rs77786149 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 G,T, 99.000000,4909.000000, 0.019768,0.980232, 596 chr1 1539811 1539812 rs75262152 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 596 chr1 1539953 1539954 rs4075275 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 C,G, 4314.000000,694.000000, 0.861422,0.138578, maf-5-some-pop 596 chr1 1540726 1540727 rs78689470 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4271.000000,737.000000, 0.852835,0.147165, maf-5-some-pop,maf-5-all-pops 596 chr1 1540767 1540768 rs199762193 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 125.000000,4883.000000, 0.024960,0.975040, 596 chr1 1541398 1541399 rs114809321 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 1655.000000,3353.000000, 0.330471,0.669529, maf-5-some-pop,maf-5-all-pops 596 chr1 1541763 1541764 rs62649433 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 266.000000,96.000000, 0.734807,0.265193, maf-5-some-pop,maf-5-all-pops 596 chr1 1541796 1541797 rs376637914 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4575.000000,433.000000, 0.913538,0.086462, 596 chr1 1542203 1542204 rs72897856 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 A,G, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop,maf-5-all-pops 596 chr1 1542720 1542721 rs532649680 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 69.000000,4939.000000, 0.013778,0.986222, 596 chr1 1543310 1543311 rs28703654 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1303.000000,3705.000000, 0.260184,0.739816, maf-5-some-pop 596 chr1 1543468 1543469 rs145808520 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, 596 chr1 1543591 1543592 rs146563773 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 596 chr1 1543592 1543593 rs77812103 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 271.000000,4737.000000, 0.054113,0.945887, 596 chr1 1543623 1543624 rs61774903 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 2824.000000,2184.000000, 0.563898,0.436102, maf-5-some-pop,maf-5-all-pops 596 chr1 1543763 1543764 rs144952012 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 596 chr1 1543922 1543923 rs114701134 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 596 chr1 1543982 1543983 rs113072236 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 742.000000,4266.000000, 0.148163,0.851837, 596 chr1 1544302 1544303 rs143180328 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 596 chr1 1544449 1544450 rs147410092 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 744.000000,4264.000000, 0.148562,0.851438, 596 chr1 1544497 1544498 rs113790476 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1545269 1545270 rs28657953 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4294.000000,714.000000, 0.857428,0.142572, maf-5-some-pop,maf-5-all-pops 596 chr1 1545745 1545746 rs11488587 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSAHASNP,TISHKOFF, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop,maf-5-all-pops 596 chr1 1545920 1545921 rs75199071 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 596 chr1 1546170 1546172 rs200870104 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSMP,TISHKOFF, 2 -,AG, 104.000000,4904.000000, 0.020767,0.979233, 596 chr1 1546303 1546304 rs11492279 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4241.000000,767.000000, 0.846845,0.153155, maf-5-some-pop,maf-5-all-pops 596 chr1 1547053 1547054 rs28624108 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,G, 4745.000000,263.000000, 0.947484,0.052516, 596 chr1 1547249 1547250 rs78203567 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 596 chr1 1548246 1548247 rs537029003 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 3971.000000,1037.000000, 0.792931,0.207069, 596 chr1 1548469 1548470 rs111610668 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4267.000000,741.000000, 0.852037,0.147963, 596 chr1 1548580 1548581 rs150724776 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 596 chr1 1548671 1548672 rs189890421 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 65.000000,4943.000000, 0.012979,0.987021, 596 chr1 1548672 1548673 rs560454544 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 596 chr1 1548710 1548710 rs200881740 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 -,T, 3692.000000,1316.000000, 0.737220,0.262780, 596 chr1 1548895 1548896 rs7519863 0 - G G C/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 596 chr1 1549353 1549354 rs12066 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,LEE,PJP,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2799.000000,2209.000000, 0.558906,0.441094, maf-5-some-pop,maf-5-all-pops 596 chr1 1549438 1549443 rs139492556 0 + AAAAG AAAAG -/AAAAG genomic deletion unknown 0 0 near-gene-5 range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,AAAAG, 53.000000,4955.000000, 0.010583,0.989417, 596 chr1 1549443 1549444 rs573376279 0 + A A -/A genomic deletion unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 -,A, 210.000000,4798.000000, 0.041933,0.958067, 596 chr1 1549604 1549605 rs28430872 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 C,T, 4858.000000,150.000000, 0.970048,0.029952, maf-5-some-pop,maf-5-all-pops 596 chr1 1549719 1549720 rs72634815 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop,maf-5-all-pops 596 chr1 1549749 1549750 rs74735770 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 596 chr1 1549910 1549911 rs74045801 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 429.000000,4579.000000, 0.085663,0.914337, maf-5-some-pop 596 chr1 1550395 1550396 rs70937160 0 + A A -/A genomic deletion unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,GMI,PJP,SSMP, 2 -,A, 3998.000000,1010.000000, 0.798323,0.201677, 596 chr1 1550744 1550745 rs114245277 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,C, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 596 chr1 1551248 1551249 rs9726211 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 2610.000000,2398.000000, 0.521166,0.478834, maf-5-some-pop,maf-5-all-pops 596 chr1 1551427 1551428 rs111715097 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 2 1000GENOMES,BCM-HGSC-SUB, 2 C,T, 4263.000000,745.000000, 0.851238,0.148762, maf-5-some-pop,maf-5-all-pops 596 chr1 1551829 1551830 rs115977330 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4951.000000,57.000000, 0.988618,0.011382, 596 chr1 1552033 1552034 rs149275584 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF, 2 C,G, 102.000000,4906.000000, 0.020367,0.979633, 596 chr1 1552096 1552097 rs28502067 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,GMI,SSAHASNP,SSMP, 2 A,G, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 596 chr1 1552573 1552574 rs28475060 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 596 chr1 1553030 1553031 rs74047804 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 596 chr1 1553497 1553498 rs28546565 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 783.000000,4225.000000, 0.156350,0.843650, maf-5-some-pop,maf-5-all-pops 596 chr1 1553560 1553561 rs142389064 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 102.000000,4906.000000, 0.020367,0.979633, 596 chr1 1553592 1553593 rs28623434 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2720.000000,2288.000000, 0.543131,0.456869, maf-5-some-pop,maf-5-all-pops 596 chr1 1553667 1553668 rs28689170 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 596 chr1 1553669 1553670 rs9442410 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 596 chr1 1553794 1553795 rs188201282 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, 596 chr1 1554171 1554172 rs28601681 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop 596 chr1 1554528 1554529 rs528159464 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, 596 chr1 1555395 1555396 rs12725787 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4748.000000,260.000000, 0.948083,0.051917, 596 chr1 1555640 1555641 rs28570192 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,SSAHASNP,TISHKOFF, 2 A,G, 169.000000,4839.000000, 0.033746,0.966254, maf-5-some-pop,maf-5-all-pops 596 chr1 1555717 1555718 rs78656035 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 596 chr1 1556883 1556909 rs530684896 0 + GGCAGCGTCACCCGACAGGTGAGGGA GGCAGCGTCACCCGACAGGTGAGGGA -/GGCAGCGTCACCCGACAGGTGAGGGA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GGCAGCGTCACCCGACAGGTGAGGGA, 73.000000,4935.000000, 0.014577,0.985423, 596 chr1 1556915 1556916 rs74047807 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 596 chr1 1557180 1557181 rs77432776 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 55.000000,4953.000000, 0.010982,0.989018, 596 chr1 1557643 1557644 rs79366324 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 596 chr1 1557674 1557675 rs28710339 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1378.000000,3630.000000, 0.275160,0.724840, maf-5-some-pop,maf-5-all-pops 596 chr1 1557761 1557762 rs79372291 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 596 chr1 1557889 1557890 rs72634816 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4282.000000,726.000000, 0.855032,0.144968, maf-5-some-pop,maf-5-all-pops 596 chr1 1558279 1558280 rs28714563 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop,maf-5-all-pops 596 chr1 1558403 1558404 rs80009784 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,maf-5-all-pops 596 chr1 1558540 1558541 rs139271894 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 596 chr1 1558791 1558792 rs12755088 0 + T T C/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3874.000000,1134.000000, 0.773562,0.226438, maf-5-some-pop,maf-5-all-pops 596 chr1 1559208 1559209 rs28681667 0 + G G G/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSAHASNP,TISHKOFF, 2 G,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 596 chr1 1559392 1559393 rs184796749 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 596 chr1 1559465 1559466 rs28617190 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1704.000000,3304.000000, 0.340256,0.659744, maf-5-some-pop,maf-5-all-pops 596 chr1 1559584 1559585 rs72897886 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4639.000000,369.000000, 0.926318,0.073682, maf-5-some-pop 596 chr1 1559592 1559593 rs79432957 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 596 chr1 1559703 1559704 rs70937161 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 3238.000000,1770.000000, 0.646565,0.353435, 596 chr1 1559970 1559971 rs12748433 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 934.000000,4074.000000, 0.186502,0.813498, maf-5-some-pop 596 chr1 1560099 1560100 rs28441650 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 759.000000,4249.000000, 0.151558,0.848442, maf-5-some-pop,maf-5-all-pops 596 chr1 1560102 1560103 rs28635343 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3804.000000,1204.000000, 0.759585,0.240415, maf-5-some-pop,maf-5-all-pops 596 chr1 1560134 1560135 rs79765738 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 596 chr1 1560843 1560844 rs72897888 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,NHLBI-ESP, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop,maf-5-all-pops 596 chr1 1560857 1560858 rs72897889 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop,maf-5-all-pops 596 chr1 1561184 1561185 rs72634817 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,G, 767.000000,4241.000000, 0.153155,0.846845, maf-5-some-pop,maf-5-all-pops 596 chr1 1561330 1561331 rs66599757 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 1430.000000,3578.000000, 0.285543,0.714457, maf-5-some-pop,maf-5-all-pops 596 chr1 1561340 1561341 rs111594888 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 596 chr1 1561371 1561372 rs77523903 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 596 chr1 1562436 1562437 rs28510084 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP, 2 C,G, 2802.000000,2206.000000, 0.559505,0.440495, maf-5-some-pop,maf-5-all-pops 596 chr1 1562535 1562536 rs11544452 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 12 1000GENOMES,BCMHGSC_JDW,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP, 2 A,G, 707.000000,4301.000000, 0.141174,0.858826, maf-5-some-pop,maf-5-all-pops 596 chr1 1562701 1562702 rs75147751 0 + C C C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 596 chr1 1562892 1562893 rs192023518 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 596 chr1 1562894 1562895 rs12735861 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,T, 2262.000000,2746.000000, 0.451677,0.548323, 596 chr1 1562902 1562903 rs370296560 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 596 chr1 1563099 1563100 rs76957527 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 5 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 596 chr1 1563104 1563105 rs74808013 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 6 1000GENOMES,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 596 chr1 1563218 1563219 rs552923079 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4950.000000,58.000000, 0.988419,0.011582, 596 chr1 1563219 1563220 rs574511117 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, 596 chr1 1563259 1563260 rs148507537 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 596 chr1 1563270 1563271 rs74047811 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, 596 chr1 1563400 1563401 rs74047812 0 + C C C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 596 chr1 1563788 1563789 rs74892851 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,C, 755.000000,4253.000000, 0.150759,0.849241, maf-5-some-pop,maf-5-all-pops 596 chr1 1564193 1564194 rs3935032 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TSC-CSHL, 2 C,T, 4252.000000,756.000000, 0.849042,0.150958, maf-5-some-pop,maf-5-all-pops 596 chr1 1564711 1564712 rs61774907 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 G,T, 3903.000000,1105.000000, 0.779353,0.220647, maf-5-some-pop,maf-5-all-pops 596 chr1 1564857 1564858 rs116670248 0 + G G A/G genomic single unknown 0 0 coding-synon,intron,ncRNA exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 596 chr1 1564952 1564953 rs112177324 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,LUNTER,SSMP, 2 -,G, 754.000000,4254.000000, 0.150559,0.849441, 596 chr1 1565359 1565360 rs115800180 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 596 chr1 1565421 1565422 rs141035747 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 596 chr1 1565605 1565623 rs375078398 0 + GCAGCTCCCTGCTCCCCG GCAGCTCCCTGCTCCCCG -/GCAGCTCCCTGCTCCCCG genomic deletion unknown 0 0 intron,near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,GCAGCTCCCTGCTCCCCG, 394.000000,4614.000000, 0.078674,0.921326, 596 chr1 1565941 1565942 rs116306698 0 + C C C/G genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-3 exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,G, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop,maf-5-all-pops 596 chr1 1565971 1565972 rs137939848 0 + G G C/G genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-3 exact 1 4 1000GENOMES,BL,EVA-GONL,SSMP, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 596 chr1 1566100 1566101 rs574161148 0 + C C C/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 596 chr1 1566159 1566160 rs28464684 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,SSAHASNP,SSMP, 2 C,T, 4390.000000,618.000000, 0.876597,0.123403, maf-5-some-pop 596 chr1 1566176 1566177 rs61774908 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 C,T, 3917.000000,1091.000000, 0.782149,0.217851, maf-5-some-pop,maf-5-all-pops 596 chr1 1566720 1566720 rs569458377 0 + - - -/CCCCGC genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,CCCCGC, 4933.000000,75.000000, 0.985024,0.014976, 596 chr1 1566991 1566991 rs558434932 0 + - - -/C genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,C, 4946.000000,62.000000, 0.987620,0.012380, 596 chr1 1567048 1567049 rs113003635 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 596 chr1 1567088 1567089 rs28451771 0 + T T C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 14 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 4079.000000,929.000000, 0.814497,0.185503, maf-5-some-pop,maf-5-all-pops 596 chr1 1567170 1567171 rs182350843 0 + G G C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, 596 chr1 1567205 1567206 rs28456011 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 1302.000000,3706.000000, 0.259984,0.740016, maf-5-some-pop,maf-5-all-pops 596 chr1 1567289 1567290 rs76376351 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 1 1000GENOMES, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 596 chr1 1567516 1567517 rs573586500 0 + G G C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 1 1000GENOMES, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, 596 chr1 1570038 1570039 rs2235535 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 8 1000GENOMES,BCMHGSC_JDW,CGM_KYOTO,CNG,ENSEMBL,PJP,SSMP,YUSUKE, 2 C,G, 537.000000,4471.000000, 0.107228,0.892772, 596 chr1 1570659 1570660 rs568622984 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 255.000000,4753.000000, 0.050919,0.949081, 596 chr1 1571639 1571640 rs61774909 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 G,T, 3785.000000,1223.000000, 0.755791,0.244209, 596 chr1 1571801 1571802 rs116527252 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 596 chr1 1571828 1571829 rs147836863 0 + A A A/G genomic single by-cluster,by-frequency 0.026635 0.112287 unknown exact 1 NonIntegerChromCount 3 BL,CLINSEQ_SNP,GMI, 2 A,G, 514.953003,7.047000, 0.986500,0.013500, 596 chr1 1572034 1572035 rs74047814 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 596 chr1 1572124 1572125 rs200050513 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,CLINSEQ_SNP,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, 596 chr1 1572723 1572724 rs187245188 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,C, 51.000000,4957.000000, 0.010184,0.989816, 597 chr1 1572938 1572939 rs28688376 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 1182.000000,3826.000000, 0.236022,0.763978, maf-5-some-pop,maf-5-all-pops 597 chr1 1572943 1572944 rs376482852 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,C, 179.000000,4829.000000, 0.035743,0.964257, 597 chr1 1572967 1572968 rs151157623 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 597 chr1 1573077 1573078 rs201088964 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,CLINSEQ_SNP, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 597 chr1 1574018 1574019 rs9442412 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP, 2 A,G, 3922.000000,1086.000000, 0.783147,0.216853, 597 chr1 1574062 1574063 rs11488588 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,SC_SNP,SSMP, 2 C,T, 14.000000,104.000000, 0.118644,0.881356, maf-5-some-pop,maf-5-all-pops 597 chr1 1574240 1574241 rs9727735 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,SSAHASNP,SSMP, 2 C,T, 4440.000000,568.000000, 0.886581,0.113419, 597 chr1 1574708 1574709 rs28401288 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 G,T, 3016.000000,1992.000000, 0.602236,0.397764, 597 chr1 1574778 1574778 rs371621658 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,A, 4827.000000,181.000000, 0.963858,0.036142, 597 chr1 1575042 1575043 rs569420537 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 597 chr1 1575045 1575046 rs148104233 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 544.000000,4464.000000, 0.108626,0.891374, 597 chr1 1575467 1575468 rs566992195 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4907.000000,101.000000, 0.979832,0.020168, 597 chr1 1575615 1575616 rs28394074 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,PJP,SSAHASNP,SSMP, 2 C,T, 4344.000000,664.000000, 0.867412,0.132588, 597 chr1 1575783 1575784 rs200227742 0 + C C C/T genomic single by-cluster,by-frequency 0.022736 0.104167 unknown exact 1 NonIntegerChromCount 3 CLINSEQ_SNP,EXOME_CHIP,SSMP, 2 C,T, 517.973999,6.026000, 0.988500,0.011500, 597 chr1 1575784 1575785 rs373009511 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 597 chr1 1576621 1576622 rs3765907 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,PJP,SSMP,YUSUKE, 2 C,T, 4523.000000,485.000000, 0.903155,0.096845, 597 chr1 1576635 1576636 rs3765908 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP,YUSUKE, 2 A,G, 2741.000000,2267.000000, 0.547324,0.452676, 597 chr1 1576729 1576730 rs114704737 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 102.000000,16.000000, 0.864407,0.135593, maf-5-some-pop,maf-5-all-pops 597 chr1 1578545 1578545 rs546704380 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 4912.000000,96.000000, 0.980831,0.019169, 597 chr1 1578601 1578602 rs372656794 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4479.000000,529.000000, 0.894369,0.105631, 597 chr1 1579177 1579178 rs535422823 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, 597 chr1 1580247 1580248 rs549001291 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 597 chr1 1580523 1580524 rs201539299 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,CLINSEQ_SNP, 2 C,T, 4463.000000,545.000000, 0.891174,0.108826, 597 chr1 1580737 1580738 rs149767621 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,PJP, 2 A,T, 1834.000000,3174.000000, 0.366214,0.633786, 597 chr1 1580783 1580784 rs549062931 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, 597 chr1 1581194 1581195 rs139145541 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 597 chr1 1581258 1581259 rs201293772 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 597 chr1 1581318 1581319 rs149521079 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4924.000000,84.000000, 0.983227,0.016773, 597 chr1 1581557 1581558 rs61774913 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 C,T, 1.000000,14.000000, 0.066667,0.933333, 597 chr1 1581585 1581586 rs61774914 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 C,T, 4384.000000,624.000000, 0.875399,0.124601, 597 chr1 1581698 1581699 rs115618954 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,G, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 597 chr1 1581712 1581713 rs76922129 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,NHLBI-ESP,PJP, 2 A,C, 3760.000000,1248.000000, 0.750799,0.249201, 597 chr1 1581733 1581734 rs144163651 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 597 chr1 1581889 1581892 rs150768035 0 + GTA GTA -/GTA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,GTA, 145.000000,4863.000000, 0.028954,0.971046, 597 chr1 1581940 1581941 rs147767120 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 597 chr1 1582105 1582106 rs79942991 0 + T T C/T genomic single by-cluster,by-frequency 0.066872 0.170188 unknown exact 1 NonIntegerChromCount 7 BL,CLINSEQ_SNP,ENSEMBL,GMI,NHLBI-ESP,PJP,SSMP, 2 C,T, 556.049988,19.950001, 0.965365,0.034635, 597 chr1 1582201 1582202 rs61774918 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,GMI,PJP,SSMP, 2 C,T, 2803.000000,2205.000000, 0.559704,0.440296, 597 chr1 1582454 1582455 rs61774919 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 BCMHGSC_JDW,BL,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 7.000000,3.000000, 0.700000,0.300000, 597 chr1 1582483 1582484 rs536729858 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 597 chr1 1582540 1582543 rs144614793 0 + ATA ATA -/ATA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,PJP,SSMP, 2 -,ATA, 61.000000,4947.000000, 0.012180,0.987819, 597 chr1 1582608 1582609 rs558452208 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4913.000000,95.000000, 0.981030,0.018970, 597 chr1 1583242 1583243 rs184794094 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 597 chr1 1583653 1583654 rs115533093 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop,maf-5-all-pops 597 chr1 1583750 1583751 rs147390666 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 166.000000,4842.000000, 0.033147,0.966853, 597 chr1 1583878 1583884 rs139562852 0 + GCACAC GCACAC -/GCACAC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BL,GMI,LUNTER, 2 -,GCACAC, 3300.000000,1708.000000, 0.658946,0.341054, 597 chr1 1583934 1583934 rs147210570 0 + - - -/GTG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,GTG, 4923.000000,85.000000, 0.983027,0.016973, 597 chr1 1584101 1584102 rs28525262 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP,SSMP, 2 A,G, 1237.000000,3771.000000, 0.247005,0.752995, maf-5-some-pop,maf-5-all-pops 597 chr1 1584116 1584117 rs4648756 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4396.000000,612.000000, 0.877796,0.122204, maf-5-some-pop 597 chr1 1584191 1584192 rs4648606 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 2972.000000,2036.000000, 0.593450,0.406550, 597 chr1 1584217 1584218 rs4648607 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4170.000000,838.000000, 0.832668,0.167332, maf-5-some-pop,maf-5-all-pops 597 chr1 1584223 1584224 rs4648757 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 4443.000000,565.000000, 0.887181,0.112819, maf-5-some-pop 597 chr1 1584288 1584289 rs143762478 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 597 chr1 1584299 1584300 rs113005436 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 597 chr1 1584513 1584514 rs545844188 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 597 chr1 1584557 1584558 rs562455399 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 597 chr1 1584570 1584571 rs61774954 0 + A A A/C genomic single by-frequency 0.42 0.183303 unknown exact 1 2 BCMHGSC_JDW,ENSEMBL, 2 A,C, 3.000000,7.000000, 0.300000,0.700000, 597 chr1 1584573 1584574 rs61774955 0 + A A A/C genomic single by-frequency 0.42 0.183303 unknown exact 1 2 BCMHGSC_JDW,ENSEMBL, 2 A,C, 3.000000,7.000000, 0.300000,0.700000, 597 chr1 1584587 1584588 rs61774956 0 + T T A/T genomic single by-frequency 0.42 0.183303 unknown exact 1 2 BCMHGSC_JDW,ENSEMBL, 2 A,T, 7.000000,3.000000, 0.700000,0.300000, 597 chr1 1584841 1584842 rs12753686 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1895.000000,3113.000000, 0.378395,0.621605, 597 chr1 1584917 1584918 rs12753729 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1895.000000,3113.000000, 0.378395,0.621605, 597 chr1 1585055 1585056 rs116956437 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 597 chr1 1585256 1585257 rs4648758 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1895.000000,3113.000000, 0.378395,0.621605, maf-5-some-pop,maf-5-all-pops 597 chr1 1585313 1585317 rs70937165 0 + ACAA ACAA -/ACAA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,HUMANGENOME_JCVI,LUNTER, 2 -,ACAA, 3095.000000,1913.000000, 0.618011,0.381989, 597 chr1 1585316 1585317 rs4648759 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,SSAHASNP,WI_SSAHASNP, 2 A,C, 3315.000000,1693.000000, 0.661941,0.338059, 597 chr1 1585346 1585347 rs4648760 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3113.000000,1895.000000, 0.621605,0.378395, 597 chr1 1585387 1585388 rs4648761 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1896.000000,3112.000000, 0.378594,0.621406, 597 chr1 1585596 1585597 rs7531938 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1894.000000,3114.000000, 0.378195,0.621805, maf-5-some-pop,maf-5-all-pops 597 chr1 1585641 1585642 rs3936009 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 1901.000000,3107.000000, 0.379593,0.620407, maf-5-some-pop,maf-5-all-pops 597 chr1 1586401 1586402 rs185015247 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 597 chr1 1586646 1586650 rs113432402 0 + AGTC AGTC -/AGTC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BUSHMAN,LUNTER,SSMP, 2 -,AGTC, 299.000000,4709.000000, 0.059705,0.940296, 597 chr1 1586751 1586752 rs11486023 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4322.000000,686.000000, 0.863019,0.136981, maf-5-some-pop 597 chr1 1587314 1587315 rs4648762 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 499.000000,4509.000000, 0.099641,0.900359, maf-5-some-pop 597 chr1 1587340 1587340 rs70937166 0 + - - -/AAAC genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER, 2 -,AAAC, 693.000000,4315.000000, 0.138379,0.861621, 597 chr1 1588181 1588182 rs12731916 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 597 chr1 1588453 1588454 rs116402252 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 66.000000,4942.000000, 0.013179,0.986821, 597 chr1 1588530 1588531 rs61774957 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,BUSHMAN,GMI,ILLUMINA-UK, 2 C,T, 3787.000000,1221.000000, 0.756190,0.243810, 597 chr1 1588535 1588535 rs138141689 0 + - - -/TAA genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,TAA, 4722.000000,286.000000, 0.942891,0.057109, 597 chr1 1588542 1588543 rs71511310 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,GMI,HUMANGENOME_JCVI, 2 A,C, 1424.000000,3584.000000, 0.284345,0.715655, 597 chr1 1589043 1589044 rs554104955 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 597 chr1 1589596 1589597 rs184245128 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4937.000000,71.000000, 0.985823,0.014177, 597 chr1 1590290 1590291 rs111946117 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 C,G, 4250.000000,758.000000, 0.848642,0.151358, 597 chr1 1590326 1590327 rs7547516 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 1939.000000,3069.000000, 0.387181,0.612819, 597 chr1 1590520 1590521 rs79113395 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 1297.000000,3711.000000, 0.258986,0.741014, maf-5-some-pop,maf-5-all-pops 597 chr1 1590525 1590526 rs9329573 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4387.000000,621.000000, 0.875998,0.124002, maf-5-some-pop 597 chr1 1590574 1590575 rs9661285 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 3068.000000,1940.000000, 0.612620,0.387380, 597 chr1 1590680 1590681 rs9661500 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3067.000000,1941.000000, 0.612420,0.387580, maf-5-some-pop,maf-5-all-pops 597 chr1 1590940 1590941 rs149797133 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 597 chr1 1591868 1591869 rs150468996 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,PJP,SSMP, 2 C,T, 1993.000000,3015.000000, 0.397963,0.602037, 597 chr1 1591894 1591895 rs145403487 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,PJP,SSMP, 2 C,G, 673.000000,4335.000000, 0.134385,0.865615, 597 chr1 1592005 1592006 rs569511368 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 597 chr1 1592143 1592144 rs28625763 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 C,T, 3092.000000,1916.000000, 0.617412,0.382588, 597 chr1 1592295 1592296 rs150978567 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, 597 chr1 1592339 1592340 rs140855691 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4950.000000,58.000000, 0.988419,0.011582, 597 chr1 1592629 1592630 rs4648771 0 + A A A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3123.000000,1885.000000, 0.623602,0.376398, maf-5-some-pop,maf-5-all-pops 597 chr1 1592637 1592638 rs115866895 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4429.000000,579.000000, 0.884385,0.115615, maf-5-some-pop,maf-5-all-pops 597 chr1 1592880 1592881 rs4648774 0 + A A A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 A,C, 1914.000000,3094.000000, 0.382188,0.617812, maf-5-some-pop,maf-5-all-pops 597 chr1 1594184 1594184 rs371528017 0 - - - -/CTAA genomic insertion by-frequency 0.464849 0.127828 intron,untranslated-3 between 1 NonIntegerChromCount 1 MARSHFIELD, 2 -,CTAA, 125.660004,216.339996, 0.367427,0.632573, maf-5-some-pop,maf-5-all-pops 597 chr1 1594199 1594199 rs72502752 0 + - - -/T genomic insertion unknown 0 0 intron,untranslated-3 between 1 7 1000GENOMES,BGI,BILGI_BIOE,BL,BUSHMAN,GMI,LUNTER, 2 -,T, 1429.000000,3579.000000, 0.285343,0.714657, 597 chr1 1594366 1594367 rs74047817 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 597 chr1 1594745 1594746 rs140002360 0 + G G G/T genomic single unknown 0 0 intron,untranslated-3 exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 G,T, 4894.000000,114.000000, 0.977236,0.022764, 597 chr1 1594770 1594771 rs111597796 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 597 chr1 1594841 1594841 rs587735975 0 + - - -/CGGGGAGGTGGACAAGG genomic insertion unknown 0 0 intron,untranslated-3 between 1 1 1000GENOMES, 2 -,CGGGGAGGTGGACAAGG, 3597.000000,1411.000000, 0.718251,0.281749, 597 chr1 1594901 1594902 rs147663190 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 597 chr1 1594931 1594932 rs187504737 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 597 chr1 1594951 1594952 rs113078172 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4325.000000,683.000000, 0.863618,0.136382, 597 chr1 1595180 1595181 rs116497550 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, 597 chr1 1595197 1595198 rs4307513 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 688.000000,4320.000000, 0.137380,0.862620, maf-5-some-pop 597 chr1 1595399 1595400 rs4313339 0 + A A A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP, 2 A,G, 683.000000,4325.000000, 0.136382,0.863618, 597 chr1 1595866 1595867 rs4443835 0 + C C A/C genomic single unknown 0 0 intron,untranslated-3 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,PJP,SC_JCM,SSAHASNP,SSMP, 2 A,C, 4322.000000,686.000000, 0.863019,0.136981, 597 chr1 1596195 1596196 rs1109644 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,GMI,HGBASE,HUMANGENOME_JCVI,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1896.000000,3112.000000, 0.378594,0.621406, 597 chr1 1596303 1596304 rs1109645 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3119.000000,1889.000000, 0.622804,0.377196, maf-5-some-pop,maf-5-all-pops 597 chr1 1596499 1596500 rs72634819 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 4426.000000,582.000000, 0.883786,0.116214, maf-5-some-pop,maf-5-all-pops 597 chr1 1597019 1597020 rs72634820 0 + C C C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,G, 4388.000000,620.000000, 0.876198,0.123802, maf-5-some-pop,maf-5-all-pops 597 chr1 1597884 1597885 rs139642657 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, 597 chr1 1598432 1598433 rs139010458 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BL, 2 A,C, 1127.000000,3881.000000, 0.225040,0.774960, 597 chr1 1598433 1598434 rs148457033 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BL, 2 C,T, 1127.000000,3881.000000, 0.225040,0.774960, 597 chr1 1598484 1598485 rs183713514 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 597 chr1 1598571 1598572 rs374715536 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 A,G, 4233.000000,775.000000, 0.845248,0.154752, 597 chr1 1598572 1598573 rs369076534 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,T, 775.000000,4233.000000, 0.154752,0.845248, 597 chr1 1598579 1598580 rs112681629 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCM-HGSC-SUB, 2 A,T, 4299.000000,709.000000, 0.858427,0.141573, 597 chr1 1599160 1599161 rs6604981 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 643.000000,4365.000000, 0.128395,0.871605, maf-5-some-pop 597 chr1 1599360 1599361 rs6662227 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 A,G, 642.000000,4366.000000, 0.128195,0.871805, 597 chr1 1599376 1599377 rs7512996 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,PJP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4728.000000,280.000000, 0.944089,0.055911, 597 chr1 1599386 1599387 rs368438548 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4429.000000,579.000000, 0.884385,0.115615, 597 chr1 1599546 1599547 rs12725286 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,T, 1990.000000,3018.000000, 0.397364,0.602636, 597 chr1 1599887 1599888 rs2072923 0 + A A A/G genomic single unknown 0 0 coding-synon,missense exact 1 17 ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,YUSUKE, 2 A,G, 3.000000,15.000000, 0.166667,0.833333, maf-5-some-pop,maf-5-all-pops 597 chr1 1599980 1599981 rs72634822 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4450.000000,558.000000, 0.888578,0.111422, maf-5-some-pop,maf-5-all-pops 597 chr1 1600015 1600016 rs552623800 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 145.000000,4863.000000, 0.028954,0.971046, 597 chr1 1600155 1600156 rs147261530 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 4445.000000,563.000000, 0.887580,0.112420, 597 chr1 1600159 1600160 rs72634824 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 3780.000000,1228.000000, 0.754792,0.245208, maf-5-some-pop,maf-5-all-pops 597 chr1 1601014 1601015 rs72634825 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 572.000000,4436.000000, 0.114217,0.885783, maf-5-some-pop,maf-5-all-pops 597 chr1 1601051 1601052 rs72634826 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 574.000000,4434.000000, 0.114617,0.885383, maf-5-some-pop,maf-5-all-pops 597 chr1 1601144 1601145 rs115862299 0 + G G A/G genomic single unknown 0 0 coding-synon,intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, 597 chr1 1601862 1601863 rs553708485 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 1646.000000,3362.000000, 0.328674,0.671326, 597 chr1 1602535 1602536 rs4648609 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3038.000000,1970.000000, 0.606629,0.393371, maf-5-some-pop,maf-5-all-pops 597 chr1 1602586 1602587 rs4233029 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1961.000000,3047.000000, 0.391573,0.608427, maf-5-some-pop,maf-5-all-pops 597 chr1 1602780 1602781 rs115439347 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 123.000000,4885.000000, 0.024561,0.975439, 597 chr1 1602852 1602853 rs79690428 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 597 chr1 1603162 1603163 rs7532034 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3105.000000,1903.000000, 0.620008,0.379992, maf-5-some-pop,maf-5-all-pops 597 chr1 1603235 1603236 rs11523819 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1160.000000,3848.000000, 0.231629,0.768371, maf-5-some-pop,maf-5-all-pops 597 chr1 1603433 1603434 rs6699975 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3722.000000,1286.000000, 0.743211,0.256789, maf-5-some-pop 597 chr1 1603453 1603454 rs7552375 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 574.000000,4434.000000, 0.114617,0.885383, maf-5-some-pop,maf-5-all-pops 597 chr1 1603563 1603563 rs111390267 0 + - - -/A genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,A, 4949.000000,59.000000, 0.988219,0.011781, 597 chr1 1603593 1603594 rs4648779 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2005.000000,3003.000000, 0.400359,0.599641, maf-5-some-pop,maf-5-all-pops 597 chr1 1604266 1604267 rs114336090 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,maf-5-all-pops 597 chr1 1604536 1604537 rs142112101 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 597 chr1 1604694 1604695 rs371632526 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 597 chr1 1604971 1604972 rs527932143 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 597 chr1 1605032 1605033 rs186485779 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 597 chr1 1605143 1605144 rs112577365 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 597 chr1 1605256 1605257 rs12736155 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3673.000000,1335.000000, 0.733427,0.266573, 597 chr1 1605888 1605889 rs146914302 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4941.000000,67.000000, 0.986621,0.013379, 597 chr1 1606086 1606087 rs569492898 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4940.000000,68.000000, 0.986422,0.013578, 597 chr1 1606159 1606161 rs70937170 0 + GC GC -/GC genomic deletion unknown 0 0 intron range 1 9 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,GC, 1306.000000,3702.000000, 0.260783,0.739217, 597 chr1 1606286 1606287 rs28678861 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop,maf-5-all-pops 597 chr1 1606306 1606307 rs61776786 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 1299.000000,3709.000000, 0.259385,0.740615, 597 chr1 1606359 1606360 rs193246789 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 597 chr1 1606529 1606530 rs374946663 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4446.000000,562.000000, 0.887780,0.112220, 597 chr1 1606570 1606571 rs61776787 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 2877.000000,2131.000000, 0.574481,0.425519, 597 chr1 1607177 1607178 rs376691224 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 166.000000,4842.000000, 0.033147,0.966853, 597 chr1 1607186 1607187 rs567912837 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, 597 chr1 1608184 1608185 rs547287907 0 + T T C/T genomic single unknown 0 0 untranslated-5 exact 1 1 1000GENOMES, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, 597 chr1 1608228 1608229 rs61776790 0 + C C C/T genomic single unknown 0 0 untranslated-5 exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,CLINSEQ_SNP,ENSEMBL,PJP, 2 C,T, 3683.000000,1325.000000, 0.735423,0.264577, maf-5-some-pop,maf-5-all-pops 597 chr1 1609069 1609070 rs139581921 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 597 chr1 1609073 1609074 rs116025126 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, 597 chr1 1609145 1609146 rs76994981 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4211.000000,797.000000, 0.840855,0.159145, 597 chr1 1609158 1609159 rs12724172 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1300.000000,3708.000000, 0.259585,0.740415, 597 chr1 1609164 1609165 rs12757736 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3711.000000,1297.000000, 0.741014,0.258986, 597 chr1 1609167 1609168 rs142456626 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 597 chr1 1609706 1609707 rs114806341 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BL,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 597 chr1 1609873 1609874 rs114057880 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 76.000000,4932.000000, 0.015176,0.984824, 597 chr1 1610093 1610094 rs78896679 0 + T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,T, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 597 chr1 1610379 1610380 rs74859480 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,SSMP, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 597 chr1 1610479 1610480 rs28377214 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4808.000000,200.000000, 0.960064,0.039936, 597 chr1 1610523 1610524 rs7544851 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1707.000000,3301.000000, 0.340855,0.659145, maf-5-some-pop,maf-5-all-pops 597 chr1 1610538 1610539 rs6697550 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2208.000000,2800.000000, 0.440895,0.559105, maf-5-some-pop,maf-5-all-pops 597 chr1 1610808 1610809 rs28707307 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 A,G, 4896.000000,112.000000, 0.977636,0.022364, 597 chr1 1610818 1610819 rs74567595 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 597 chr1 1610843 1610843 rs149882473 0 + - - -/TGCT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,TGCT, 4905.000000,103.000000, 0.979433,0.020567, 597 chr1 1610947 1610948 rs72901707 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 597 chr1 1611031 1611032 rs192962492 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 597 chr1 1611174 1611175 rs142991952 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, 597 chr1 1611297 1611298 rs28376104 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 334.000000,4674.000000, 0.066693,0.933307, 597 chr1 1611431 1611432 rs6700884 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2441.000000,2567.000000, 0.487420,0.512580, 597 chr1 1611497 1611498 rs146819166 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, 597 chr1 1611577 1611578 rs188304664 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4919.000000,89.000000, 0.982228,0.017772, 597 chr1 1611596 1611597 rs72901712 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 374.000000,4634.000000, 0.074680,0.925319, maf-5-some-pop,maf-5-all-pops 597 chr1 1611652 1611653 rs6695303 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2368.000000,2640.000000, 0.472843,0.527157, maf-5-some-pop,maf-5-all-pops 597 chr1 1611692 1611693 rs112296719 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 379.000000,4629.000000, 0.075679,0.924321, 597 chr1 1611994 1611995 rs4074196 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2663.000000,2345.000000, 0.531749,0.468251, maf-5-some-pop,maf-5-all-pops 597 chr1 1612025 1612026 rs138626504 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 597 chr1 1612110 1612111 rs4074197 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1356.000000,3652.000000, 0.270767,0.729233, maf-5-some-pop,maf-5-all-pops 597 chr1 1612327 1612328 rs28674735 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 597 chr1 1612539 1612540 rs28669173 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3902.000000,1106.000000, 0.779153,0.220847, maf-5-some-pop,maf-5-all-pops 597 chr1 1612634 1612635 rs112503197 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 597 chr1 1613378 1613379 rs150714087 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, 597 chr1 1614155 1614156 rs74045934 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4581.000000,427.000000, 0.914736,0.085264, maf-5-some-pop,maf-5-all-pops 597 chr1 1614340 1614341 rs143800998 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 597 chr1 1614907 1614908 rs114315094 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 597 chr1 1615347 1615348 rs7520934 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2423.000000,2585.000000, 0.483826,0.516174, maf-5-some-pop,maf-5-all-pops 597 chr1 1615704 1615705 rs28774670 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2291.000000,2717.000000, 0.457468,0.542532, maf-5-some-pop,maf-5-all-pops 597 chr1 1615746 1615747 rs28435953 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2269.000000,2739.000000, 0.453075,0.546925, maf-5-some-pop,maf-5-all-pops 597 chr1 1615775 1615776 rs28680811 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, 597 chr1 1615995 1615996 rs190606322 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 597 chr1 1616057 1616058 rs28464677 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2269.000000,2739.000000, 0.453075,0.546925, 597 chr1 1616255 1616256 rs61776792 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,TISHKOFF, 2 C,G, 1841.000000,3167.000000, 0.367612,0.632388, 597 chr1 1616547 1616548 rs202244077 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 -,A, 2005.000000,3003.000000, 0.400359,0.599641, 597 chr1 1616843 1616844 rs28739310 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,ENSEMBL,EVA-GONL,SSAHASNP,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 597 chr1 1616989 1616990 rs72901735 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4580.000000,428.000000, 0.914537,0.085463, maf-5-some-pop,maf-5-all-pops 597 chr1 1617442 1617443 rs112033089 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 G,T, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop,maf-5-all-pops 597 chr1 1617456 1617456 rs144393021 0 + - - -/T genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 2652.000000,2356.000000, 0.529553,0.470447, 597 chr1 1617483 1617484 rs199884634 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 -,C, 68.000000,4940.000000, 0.013578,0.986422, 597 chr1 1617585 1617586 rs28736713 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1847.000000,3161.000000, 0.368810,0.631190, 597 chr1 1617759 1617760 rs111969239 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,GMI, 2 C,T, 3261.000000,1747.000000, 0.651158,0.348842, 597 chr1 1617765 1617766 rs564869602 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 100.000000,4908.000000, 0.019968,0.980032, 597 chr1 1618143 1618144 rs189510346 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 597 chr1 1618499 1618500 rs28463291 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 2651.000000,2357.000000, 0.529353,0.470647, 597 chr1 1618597 1618598 rs28561498 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2713.000000,2295.000000, 0.541733,0.458267, maf-5-some-pop,maf-5-all-pops 597 chr1 1618674 1618675 rs28541555 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1882.000000,3126.000000, 0.375799,0.624201, maf-5-some-pop,maf-5-all-pops 597 chr1 1618768 1618769 rs111357629 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4579.000000,429.000000, 0.914337,0.085663, 597 chr1 1619081 1619082 rs7524863 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2389.000000,2619.000000, 0.477037,0.522963, 597 chr1 1619248 1619249 rs7527152 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 597 chr1 1619540 1619541 rs28487995 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1661.000000,3347.000000, 0.331669,0.668331, maf-5-some-pop,maf-5-all-pops 597 chr1 1619766 1619767 rs9442411 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4215.000000,793.000000, 0.841653,0.158347, maf-5-some-pop,maf-5-all-pops 597 chr1 1619847 1619848 rs61776794 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,SSMP, 2 C,G, 3020.000000,1988.000000, 0.603035,0.396965, maf-5-some-pop,maf-5-all-pops 597 chr1 1620008 1620009 rs71509485 0 + A A A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 A,T, 3262.000000,1746.000000, 0.651358,0.348642, 597 chr1 1620024 1620025 rs71509486 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,MPI_MOLGEN,SSMP, 2 C,T, 2538.000000,2470.000000, 0.506789,0.493211, 597 chr1 1620058 1620061 rs201217954 0 + AAC AAC -/AAC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 -,AAC, 2511.000000,2497.000000, 0.501398,0.498602, 597 chr1 1620085 1620086 rs71509487 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 A,G, 2475.000000,2533.000000, 0.494209,0.505791, 597 chr1 1620659 1620660 rs374313793 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, 597 chr1 1620844 1620845 rs377489142 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4905.000000,103.000000, 0.979433,0.020567, 597 chr1 1620850 1620851 rs369712575 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 103.000000,4905.000000, 0.020567,0.979433, 597 chr1 1620884 1620885 rs3737623 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1705.000000,3303.000000, 0.340455,0.659545, maf-5-some-pop,maf-5-all-pops 597 chr1 1620903 1620904 rs3737624 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2663.000000,2345.000000, 0.531749,0.468251, maf-5-some-pop,maf-5-all-pops 597 chr1 1622284 1622285 rs113135511 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI, 2 A,C, 2285.000000,2723.000000, 0.456270,0.543730, 597 chr1 1623562 1623563 rs1997726 0 + T T G/T genomic single by-frequency 0.42 0.183303 intron exact 1 NonIntegerChromCount 3 BCMHGSC_JDW,SEQUENOM,TSC-CSHL, 2 G,T, 55.200001,128.800003, 0.300000,0.700000, maf-5-some-pop,maf-5-all-pops 597 chr1 1623589 1623590 rs1997727 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 BCMHGSC_JDW,SEQUENOM,SSMP,TSC-CSHL, 2 C,T, 46.000000,138.000000, 0.250000,0.750000, maf-5-some-pop,maf-5-all-pops 597 chr1 1623973 1623974 rs115302719 0 + G G G/T genomic single unknown 0 0 untranslated-5 exact 1 1 1000GENOMES, 2 G,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop,maf-5-all-pops 597 chr1 1623974 1623975 rs116242670 0 + A A A/T genomic single unknown 0 0 untranslated-5 exact 1 1 1000GENOMES, 2 A,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop,maf-5-all-pops 597 chr1 1624288 1624289 rs376881196 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 597 chr1 1624341 1624342 rs552259471 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 61.000000,4947.000000, 0.012180,0.987819, 597 chr1 1624395 1624396 rs368915 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCMHGSC_JDW,ENSEMBL,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_JCM,SEQUENOM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3506.000000,1502.000000, 0.700080,0.299920, maf-5-some-pop,maf-5-all-pops 597 chr1 1624611 1624611 rs556762635 0 + - - -/C genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,SSIP, 2 -,C, 4840.000000,168.000000, 0.966454,0.033546, 597 chr1 1625280 1625280 rs542979901 0 + - - -/GGTGGCGGGCGC genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,GGTGGCGGGCGC, 4956.000000,52.000000, 0.989617,0.010383, 597 chr1 1626425 1626426 rs184099589 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 395.000000,4613.000000, 0.078874,0.921126, 597 chr1 1626444 1626447 rs549964349 0 + AAA AAA -/AAA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AAA, 2705.000000,2303.000000, 0.540136,0.459864, 597 chr1 1627555 1627556 rs61776801 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 2676.000000,2332.000000, 0.534345,0.465655, 597 chr1 1627652 1627653 rs376348405 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 G,T, 4612.000000,396.000000, 0.920927,0.079074, 597 chr1 1627804 1627805 rs601141 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2318.000000,2690.000000, 0.462859,0.537141, maf-5-some-pop,maf-5-all-pops 597 chr1 1628446 1628447 rs113461911 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, 597 chr1 1628573 1628574 rs373495692 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 597 chr1 1628710 1628711 rs143967677 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,PJP,SSMP, 2 A,G, 3056.000000,1952.000000, 0.610224,0.389776, 597 chr1 1628905 1628906 rs61776804 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP, 2 A,G, 3217.000000,1791.000000, 0.642372,0.357628, maf-5-some-pop 597 chr1 1629108 1629109 rs113766520 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 445.000000,4563.000000, 0.088858,0.911142, maf-5-some-pop,maf-5-all-pops 597 chr1 1629478 1629479 rs409146 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 7 BCMHGSC_JDW,ENSEMBL,GMI,HUMANGENOME_JCVI,SC_JCM,SEQUENOM,YUSUKE, 2 C,G, 6.000000,4.000000, 0.600000,0.400000, maf-5-some-pop,maf-5-all-pops 597 chr1 1629486 1629487 rs34716550 0 - T T A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 3.000000,7.000000, 0.300000,0.700000, maf-5-some-pop,maf-5-all-pops 597 chr1 1629634 1629635 rs544396836 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 269.000000,4739.000000, 0.053714,0.946286, 597 chr1 1630751 1630754 rs143134491 0 + AGG AGG -/AGG genomic deletion unknown 0 0 near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,AGG, 270.000000,4738.000000, 0.053914,0.946086, 597 chr1 1633006 1633007 rs189952872 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 1690.000000,3318.000000, 0.337460,0.662540, 597 chr1 1634137 1634137 rs536669428 0 + - - -/GCCCACCCTCTCC genomic insertion unknown 0 0 near-gene-3,untranslated-3 between 1 1 1000GENOMES, 2 -,GCCCACCCTCTCC, 1298.000000,3710.000000, 0.259185,0.740815, 597 chr1 1634142 1634142 rs554631167 0 + - - -/G genomic insertion unknown 0 0 near-gene-3,untranslated-3 between 1 1 1000GENOMES, 2 -,G, 1237.000000,3771.000000, 0.247005,0.752995, 597 chr1 1634880 1634881 rs540469785 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 123.000000,4885.000000, 0.024561,0.975439, 597 chr1 1634893 1634894 rs374281016 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,TISHKOFF, 2 A,G, 4919.000000,89.000000, 0.982228,0.017772, 597 chr1 1635010 1635011 rs1059811 0 + A A A/G genomic single unknown 0 0 ncRNA,missense exact 1 11 1000GENOMES,CANCER-GENOME,CLINSEQ_SNP,CORNELL,EVA-GONL,EXOME_CHIP,LEE,SC_SNP,SEQUENOM,SSMP,YUSUKE, 2 A,G, 3635.000000,1373.000000, 0.725839,0.274161, maf-5-some-pop 597 chr1 1635107 1635108 rs11488590 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,CLINSEQ_SNP,EVA-GONL,SC_SNP,SSMP, 2 A,G, 1228.000000,3780.000000, 0.245208,0.754792, 597 chr1 1635192 1635193 rs11486026 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP, 2 C,T, 1232.000000,3776.000000, 0.246006,0.753994, 597 chr1 1635406 1635407 rs74045976 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 4462.000000,546.000000, 0.890974,0.109026, maf-5-some-pop 597 chr1 1635420 1635421 rs72901761 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,NHLBI-ESP, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, 597 chr1 1635564 1635565 rs11488591 0 + C C C/T genomic single unknown 0 0 coding-synon,intron exact 1 14 1000GENOMES,BGI,BL,CANCER-GENOME,CLINSEQ_SNP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_SNP,SSMP, 2 C,T, 3776.000000,1232.000000, 0.753994,0.246006, maf-5-some-pop,maf-5-all-pops 597 chr1 1635616 1635617 rs115354721 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, 597 chr1 1635618 1635619 rs2076329 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BL,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HGBASE,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,WI_SSAHASNP,YUSUKE, 2 C,T, 3240.000000,1768.000000, 0.646965,0.353035, maf-5-some-pop 597 chr1 1635748 1635749 rs55880629 0 + C C A/C genomic single unknown 0 0 coding-synon,ncRNA exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,CANCER-GENOME,CLINSEQ_SNP,ENSEMBL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP, 2 A,C, 1991.000000,3017.000000, 0.397564,0.602436, maf-5-some-pop,maf-5-all-pops 597 chr1 1635927 1635928 rs2072922 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,CLINSEQ_SNP,EVA-GONL,HGBASE,JMKIDD_LAB,PJP,SSMP,YUSUKE, 2 A,G, 1119.000000,3889.000000, 0.223442,0.776558, 597 chr1 1635942 1635943 rs1534950 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,CLINSEQ_SNP,EVA-GONL,GMI,HGBASE,NHLBI-ESP,PJP,SSMP,TSC-CSHL,YUSUKE, 2 A,C, 3772.000000,1236.000000, 0.753195,0.246805, maf-5-some-pop 597 chr1 1635978 1635979 rs1534951 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BGI,BL,CLINSEQ_SNP,EVA-GONL,GMI,HGBASE,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TSC-CSHL,YUSUKE, 2 C,G, 1234.000000,3774.000000, 0.246406,0.753594, 597 chr1 1636043 1636044 rs1059822 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 19 1000GENOMES,BCMHGSC_JDW,BL,CANCER-GENOME,CLINSEQ_SNP,CORNELL,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,LEE,NHLBI-ESP,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 3245.000000,1763.000000, 0.647963,0.352037, maf-5-some-pop 597 chr1 1636111 1636112 rs4288535 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,CLINSEQ_SNP,EVA-GONL,NHLBI-ESP,PJP,SC_JCM,SSMP, 2 A,G, 1188.000000,3820.000000, 0.237220,0.762780, 597 chr1 1636154 1636155 rs74045979 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 597 chr1 1636201 1636202 rs147092243 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 597 chr1 1636273 1636274 rs2179381 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 3522.000000,1486.000000, 0.703275,0.296725, 597 chr1 1636354 1636355 rs2377226 0 - A A C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 NonIntegerChromCount 7 CLINSEQ_SNP,EVA-GONL,PJP,SC_JCM,SC_SNP,SSMP,TSC-CSHL, 2 C,T, 5.934000,510.066010, 0.011500,0.988500, 597 chr1 1636558 1636559 rs561888469 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 111.000000,4897.000000, 0.022164,0.977835, 597 chr1 1636636 1636637 rs578135140 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4099.000000,909.000000, 0.818490,0.181510, 597 chr1 1636993 1636994 rs185282174 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4378.000000,630.000000, 0.874201,0.125799, 597 chr1 1637029 1637030 rs559609009 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4543.000000,465.000000, 0.907149,0.092851, 597 chr1 1637237 1637238 rs78107173 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 A,G, 4307.000000,701.000000, 0.860024,0.139976, 597 chr1 1637254 1637255 rs9439480 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BILGI_BIOE,ENSEMBL,HUMANGENOME_JCVI,SC_SNP,SSMP, 2 A,G, 3358.000000,1650.000000, 0.670527,0.329473, 597 chr1 1637281 1637282 rs376274247 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 C,T, 590.000000,4418.000000, 0.117812,0.882188, 597 chr1 1637294 1637295 rs75609582 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 A,G, 717.000000,4291.000000, 0.143171,0.856829, 597 chr1 1637305 1637306 rs9439481 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HUMANGENOME_JCVI,SC_SNP,SSMP, 2 C,T, 1748.000000,3260.000000, 0.349042,0.650958, 597 chr1 1637459 1637460 rs146016794 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 180.000000,4828.000000, 0.035942,0.964058, 597 chr1 1637465 1637466 rs112328991 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 1061.000000,3947.000000, 0.211861,0.788139, 597 chr1 1637506 1637508 rs70937176 0 + CT CT -/CT genomic deletion unknown 0 0 intron range 1 9 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,SSMP,TISHKOFF, 2 -,CT, 1496.000000,3512.000000, 0.298722,0.701278, 597 chr1 1637579 1637580 rs112830236 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,T, 3781.000000,1227.000000, 0.754992,0.245008, 597 chr1 1637648 1637649 rs145714822 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,GMI,SSMP, 2 A,G, 1206.000000,3802.000000, 0.240815,0.759185, 597 chr1 1637721 1637722 rs61776844 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL, 2 G,T, 4951.000000,57.000000, 0.988618,0.011382, 597 chr1 1637790 1637791 rs142556515 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 4901.000000,107.000000, 0.978634,0.021366, 597 chr1 1637909 1637910 rs150959599 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 54.000000,4954.000000, 0.010783,0.989217, 597 chr1 1637926 1637927 rs113642628 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 3788.000000,1220.000000, 0.756390,0.243610, 597 chr1 1638004 1638005 rs17162876 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 3245.000000,1763.000000, 0.647963,0.352037, maf-5-some-pop 597 chr1 1638186 1638187 rs140227771 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,GMI,SSMP, 2 C,T, 3938.000000,1070.000000, 0.786342,0.213658, 597 chr1 1638331 1638332 rs180907637 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4948.000000,60.000000, 0.988019,0.011981, 597 chr1 1638336 1638337 rs9439491 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 C,T, 1198.000000,3810.000000, 0.239217,0.760783, 597 chr1 1638401 1638402 rs1060756 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,LEE,SC_SNP,SSMP, 2 A,G, 893.000000,4115.000000, 0.178315,0.821685, 597 chr1 1638439 1638440 rs538635856 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, 597 chr1 1638528 1638529 rs377149120 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 3697.000000,1311.000000, 0.738219,0.261781, 597 chr1 1638582 1638583 rs572923869 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 597 chr1 1638779 1638780 rs374384253 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 C,T, 3807.000000,1201.000000, 0.760184,0.239816, 597 chr1 1638924 1638925 rs200982240 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,missense exact 1 5 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,GMI,NHLBI-ESP, 2 C,T, 3867.000000,1141.000000, 0.772165,0.227835, 597 chr1 1638993 1638994 rs139262276 0 + C C C/T genomic single unknown 0 0 coding-synon,ncRNA,missense exact 1 6 1000GENOMES,BL,CLINSEQ_SNP,EXOME_CHIP,NHLBI-ESP,SSMP, 2 C,T, 3287.000000,1721.000000, 0.656350,0.343650, 597 chr1 1639045 1639046 rs138369165 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CLINSEQ_SNP,PJP,SSMP, 2 C,G, 2106.000000,2902.000000, 0.420527,0.579473, maf-5-some-pop,maf-5-all-pops 597 chr1 1639061 1639062 rs149613000 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,PJP,SSMP, 2 C,T, 1888.000000,3120.000000, 0.376997,0.623003, 597 chr1 1639072 1639073 rs376287692 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,T, 4160.000000,848.000000, 0.830671,0.169329, 597 chr1 1639152 1639153 rs532483892 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 3861.000000,1147.000000, 0.770966,0.229034, 597 chr1 1639154 1639155 rs552596174 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 1148.000000,3860.000000, 0.229233,0.770767, 597 chr1 1639182 1639183 rs370707448 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 3860.000000,1148.000000, 0.770767,0.229233, 597 chr1 1639239 1639240 rs548651368 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4103.000000,905.000000, 0.819289,0.180711, 597 chr1 1639240 1639241 rs568748230 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 597 chr1 1639439 1639440 rs538357680 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 3911.000000,1097.000000, 0.780950,0.219050, 597 chr1 1639489 1639490 rs533440831 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 1050.000000,3958.000000, 0.209665,0.790335, 597 chr1 1639496 1639497 rs546023519 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 597 chr1 1639533 1639534 rs139504991 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4919.000000,89.000000, 0.982228,0.017772, 597 chr1 1639569 1639570 rs141165289 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,NHLBI-ESP,SSMP, 2 C,T, 3862.000000,1146.000000, 0.771166,0.228834, 597 chr1 1639611 1639612 rs376689311 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 379.000000,4629.000000, 0.075679,0.924321, 597 chr1 1639686 1639687 rs200014331 0 + G G A/G genomic single by-cluster,by-frequency 0.073112 0.176665 intron exact 1 NonIntegerChromCount 3 CLINSEQ_SNP,NHLBI-ESP,SSMP, 2 A,G, 15.048000,380.951996, 0.038000,0.962000, 597 chr1 1639701 1639702 rs374613981 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, 597 chr1 1639800 1639801 rs74378830 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,ENSEMBL,EVA-GONL,SSMP, 2 C,T, 2873.000000,2135.000000, 0.573682,0.426318, 597 chr1 1639831 1639832 rs374376198 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 258.000000,4750.000000, 0.051518,0.948482, 597 chr1 1639912 1639913 rs144779393 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,GMI,SSMP, 2 A,C, 1584.000000,3424.000000, 0.316294,0.683706, 597 chr1 1639924 1639925 rs3765909 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,YUSUKE, 2 A,C, 231.000000,4777.000000, 0.046126,0.953874, 597 chr1 1639959 1639960 rs140002785 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,GMI,SSMP, 2 C,G, 3087.000000,1921.000000, 0.616414,0.383586, 597 chr1 1639989 1639990 rs567761586 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, 597 chr1 1640003 1640004 rs533542449 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 597 chr1 1640166 1640167 rs372272994 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,T, 3863.000000,1145.000000, 0.771366,0.228634, 597 chr1 1640175 1640176 rs374271015 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,G, 1145.000000,3863.000000, 0.228634,0.771366, 597 chr1 1640176 1640177 rs368433828 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 A,G, 1145.000000,3863.000000, 0.228634,0.771366, 597 chr1 1640208 1640209 rs377204166 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 3987.000000,1021.000000, 0.796126,0.203874, 597 chr1 1640389 1640390 rs555887612 0 + C C C/T genomic single unknown 0 0 coding-synon,ncRNA,untranslated-5 exact 1 1 1000GENOMES, 2 C,T, 4566.000000,442.000000, 0.911741,0.088259, 597 chr1 1641755 1641755 rs538775778 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4934.000000,74.000000, 0.985224,0.014776, 597 chr1 1642134 1642135 rs201023950 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 -,A, 57.000000,4951.000000, 0.011382,0.988618, 597 chr1 1643422 1643423 rs535641751 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, 597 chr1 1643739 1643740 rs572556304 0 + C C C/T genomic single unknown 0 0 coding-synon,intron,ncRNA,untranslated-5 exact 1 1 1000GENOMES, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 597 chr1 1643909 1643910 rs71509495 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,SSMP, 2 A,G, 558.000000,4450.000000, 0.111422,0.888578, 597 chr1 1643953 1643954 rs577911150 0 + T T A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 497.000000,4511.000000, 0.099241,0.900759, 597 chr1 1644280 1644281 rs559490072 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 68.000000,4940.000000, 0.013578,0.986422, 597 chr1 1644311 1644312 rs111250154 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4082.000000,926.000000, 0.815096,0.184904, 597 chr1 1644350 1644351 rs113252192 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,GMI, 2 C,T, 2725.000000,2283.000000, 0.544129,0.455871, 597 chr1 1644456 1644457 rs569941747 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 127.000000,4881.000000, 0.025359,0.974641, 597 chr1 1644571 1644572 rs2143105 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TSC-CSHL, 2 A,G, 2039.000000,2969.000000, 0.407149,0.592851, 597 chr1 1644595 1644604 rs199768915 0 + TATTTTTAC TATTTTTAC -/TATTTTTAC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,SSMP, 2 -,TATTTTTAC, 939.000000,4069.000000, 0.187500,0.812500, 597 chr1 1644603 1644604 rs189563747 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 2302.000000,2706.000000, 0.459665,0.540335, 597 chr1 1644789 1644790 rs564021596 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, 597 chr1 1644835 1644836 rs2179382 0 + G G A/G genomic single by-cluster,by-frequency,by-hapmap 0.437836 0.164977 intron exact 1 7 BCM-HGSC-SUB,BCMHGSC_JDW,GMI,ILLUMINA,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 112.000000,234.000000, 0.323699,0.676301, maf-5-some-pop,maf-5-all-pops 597 chr1 1645049 1645050 rs77869096 0 + C C C/T genomic single unknown 0 0 intron exact 1 NonIntegerChromCount 8 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SSMP, 2 C,T, 13.975000,120.025002, 0.104291,0.895709, maf-5-some-pop,maf-5-all-pops 597 chr1 1645092 1645093 rs80318714 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SSMP, 2 C,T, 2181.000000,2827.000000, 0.435503,0.564497, 597 chr1 1645112 1645113 rs201419561 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 1453.000000,3555.000000, 0.290136,0.709864, 597 chr1 1645114 1645115 rs78711691 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,GMI,PJP,SSMP, 2 C,T, 2064.000000,2944.000000, 0.412141,0.587859, 597 chr1 1645189 1645190 rs113713941 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,GMI,PJP,SSMP, 2 C,T, 1681.000000,3327.000000, 0.335663,0.664337, 597 chr1 1645365 1645366 rs7528782 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,WI_SSAHASNP, 2 A,G, 1728.000000,3280.000000, 0.345048,0.654952, maf-5-some-pop 597 chr1 1645398 1645399 rs71509502 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,GMI,HUMANGENOME_JCVI, 2 A,G, 2274.000000,2734.000000, 0.454073,0.545927, 597 chr1 1645433 1645434 rs200479157 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 3577.000000,1431.000000, 0.714257,0.285743, 597 chr1 1645510 1645511 rs80025167 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,SSMP, 2 C,G, 2280.000000,2728.000000, 0.455272,0.544728, 597 chr1 1645961 1645962 rs61776847 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI, 2 A,G, 2029.000000,2979.000000, 0.405152,0.594848, 597 chr1 1645999 1646000 rs371424972 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 2871.000000,2137.000000, 0.573283,0.426717, 597 chr1 1646005 1646006 rs75015061 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,GMI,SSMP, 2 A,G, 2136.000000,2872.000000, 0.426518,0.573482, 597 chr1 1646073 1646074 rs201159473 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 2353.000000,2655.000000, 0.469848,0.530152, 597 chr1 1646076 1646077 rs76473385 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,GMI,SSMP, 2 G,T, 2353.000000,2655.000000, 0.469848,0.530152, 597 chr1 1646112 1646113 rs199941510 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 C,G, 3001.000000,2007.000000, 0.599241,0.400759, 597 chr1 1646158 1646159 rs574070515 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, 597 chr1 1646245 1646246 rs564943407 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4621.000000,387.000000, 0.922724,0.077276, 597 chr1 1646370 1646371 rs61776850 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 G,T, 2991.000000,2017.000000, 0.597244,0.402756, maf-5-some-pop,maf-5-all-pops 597 chr1 1646425 1646426 rs546602766 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4600.000000,408.000000, 0.918530,0.081470, 597 chr1 1646426 1646427 rs61776851 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,PJP,SSMP, 2 G,T, 3686.000000,1322.000000, 0.736022,0.263978, 597 chr1 1646449 1646450 rs3820004 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,GMI,PJP,SSMP,YUSUKE, 2 A,G, 3685.000000,1323.000000, 0.735823,0.264177, 597 chr1 1646573 1646574 rs760925 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,TSC-CSHL, 2 C,T, 3750.000000,1258.000000, 0.748802,0.251198, maf-5-some-pop,maf-5-all-pops 597 chr1 1646656 1646657 rs760926 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SSMP,TSC-CSHL, 2 C,T, 3752.000000,1256.000000, 0.749201,0.250799, maf-5-some-pop,maf-5-all-pops 597 chr1 1646788 1646789 rs760927 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,EVA-GONL,GMI,PJP,SSMP,TSC-CSHL, 2 C,T, 3752.000000,1256.000000, 0.749201,0.250799, maf-5-some-pop 597 chr1 1646979 1646980 rs61776853 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,C, 109.000000,4899.000000, 0.021765,0.978235, 597 chr1 1647223 1647224 rs77308714 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 G,T, 114.000000,4894.000000, 0.022764,0.977236, 597 chr1 1647276 1647277 rs4437818 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3598.000000,1410.000000, 0.718450,0.281550, 597 chr1 1647298 1647299 rs760928 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,TSC-CSHL, 2 C,T, 1266.000000,3742.000000, 0.252796,0.747204, maf-5-some-pop,maf-5-all-pops 597 chr1 1647300 1647301 rs760929 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,SSMP,TSC-CSHL, 2 A,G, 3742.000000,1266.000000, 0.747204,0.252796, maf-5-some-pop,maf-5-all-pops 597 chr1 1647523 1647524 rs760930 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1266.000000,3742.000000, 0.252796,0.747204, maf-5-some-pop 597 chr1 1647527 1647528 rs760931 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3759.000000,1249.000000, 0.750599,0.249401, maf-5-some-pop 597 chr1 1647535 1647536 rs115980964 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop,maf-5-all-pops 597 chr1 1647649 1647649 rs70937179 0 + - - -/T genomic insertion unknown 0 0 intron between 1 10 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,TISHKOFF, 2 -,T, 1679.000000,3329.000000, 0.335264,0.664736, 597 chr1 1647675 1647676 rs115993337 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 597 chr1 1647685 1647686 rs909823 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1242.000000,3766.000000, 0.248003,0.751997, maf-5-some-pop,maf-5-all-pops 597 chr1 1647927 1647928 rs1883424 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3268.000000,1740.000000, 0.652556,0.347444, maf-5-some-pop,maf-5-all-pops 597 chr1 1648026 1648027 rs61776857 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 C,T, 3857.000000,1151.000000, 0.770168,0.229832, 597 chr1 1648113 1648114 rs140467437 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 597 chr1 1648148 1648149 rs114176685 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4902.000000,106.000000, 0.978834,0.021166, 597 chr1 1648207 1648208 rs61776858 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 C,T, 1267.000000,3741.000000, 0.252995,0.747005, 597 chr1 1648234 1648235 rs28722732 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1268.000000,3740.000000, 0.253195,0.746805, 597 chr1 1648339 1648339 rs111515312 0 + - - -/ATGTTA genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER, 2 -,ATGTTA, 329.000000,4679.000000, 0.065695,0.934305, 597 chr1 1648404 1648405 rs28669101 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,G, 1151.000000,3857.000000, 0.229832,0.770168, maf-5-some-pop 597 chr1 1648488 1648489 rs72909017 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 597 chr1 1648506 1648506 rs76448668 0 + - - -/T genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,GMI,LUNTER, 2 -,T, 1246.000000,3762.000000, 0.248802,0.751198, 597 chr1 1648536 1648537 rs72909018 0 + G G A/G genomic single by-cluster,by-frequency 0.5 0 intron exact 1 9 BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA-UK,SSMP, 2 A,G, 7.000000,7.000000, 0.500000,0.500000, 597 chr1 1648623 1648624 rs61776859 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP, 2 A,C, 3742.000000,1266.000000, 0.747204,0.252796, 597 chr1 1648624 1648625 rs76907038 0 + A A A/G genomic single by-cluster,by-frequency,by-1000genomes 0.475309 0.108333 intron exact 1 7 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,SSMP, 2 A,G, 11.000000,7.000000, 0.611111,0.388889, 597 chr1 1648641 1648642 rs72634833 0 + T T C/T genomic single by-cluster,by-frequency,by-1000genomes 0.495 0.049749 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA-UK,SSMP, 2 C,T, 9.000000,11.000000, 0.450000,0.550000, 597 chr1 1648683 1648684 rs72909020 0 + C C C/T genomic single by-cluster,by-frequency,by-1000genomes 0.495868 0.045266 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA-UK,SSMP, 2 C,T, 12.000000,10.000000, 0.545455,0.454545, 597 chr1 1648830 1648831 rs61777460 0 + T T C/T genomic single by-cluster,by-frequency 0.5 0 intron exact 1 9 BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA-UK,SSMP, 2 C,T, 8.000000,8.000000, 0.500000,0.500000, 597 chr1 1648867 1648868 rs72909024 0 + T T A/T genomic single by-cluster,by-frequency 0.493827 0.055212 intron exact 1 8 BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA-UK,SSMP, 2 A,T, 10.000000,8.000000, 0.555556,0.444444, 597 chr1 1648945 1648946 rs909824 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SEQUENOM,SSMP,TSC-CSHL, 2 C,T, 3671.000000,1337.000000, 0.733027,0.266973, maf-5-some-pop,maf-5-all-pops 597 chr1 1648964 1648965 rs61777461 0 + C C C/T genomic single by-cluster,by-frequency 0.489796 0.070696 intron exact 1 7 BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,SSMP, 2 C,T, 6.000000,8.000000, 0.428571,0.571429, 597 chr1 1649093 1649094 rs76123672 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,GMI,SSMP, 2 C,T, 3735.000000,1273.000000, 0.745807,0.254193, 597 chr1 1649094 1649095 rs75402973 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ENSEMBL, 2 A,G, 1447.000000,3561.000000, 0.288938,0.711062, 597 chr1 1649188 1649190 rs547553974 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TG, 51.000000,4957.000000, 0.010184,0.989816, 597 chr1 1649391 1649392 rs28635530 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,GMI,MPI_MOLGEN,SSAHASNP,SSMP, 2 C,T, 3269.000000,1739.000000, 0.652756,0.347244, 597 chr1 1649479 1649479 rs143001844 0 + - - -/AG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,GMI, 2 -,AG, 1553.000000,3455.000000, 0.310104,0.689896, 597 chr1 1649749 1649750 rs34963151 0 - A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,GMI,HUMANGENOME_JCVI, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 597 chr1 1650032 1650033 rs61777470 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,PJP,SSMP, 2 C,T, 3742.000000,1266.000000, 0.747204,0.252796, 597 chr1 1650043 1650044 rs148889398 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4594.000000,414.000000, 0.917332,0.082668, 597 chr1 1650049 1650050 rs559471297 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4593.000000,415.000000, 0.917133,0.082867, 597 chr1 1650077 1650077 rs70937182 0 + - - -/T genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BILGI_BIOE,BL,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 1828.000000,3180.000000, 0.365016,0.634984, 597 chr1 1650101 1650102 rs61777471 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1262.000000,3746.000000, 0.251997,0.748003, 597 chr1 1650119 1650120 rs111938876 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, 597 chr1 1650199 1650200 rs1969650 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1265.000000,3743.000000, 0.252596,0.747404, 597 chr1 1650224 1650225 rs1967675 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 415.000000,4593.000000, 0.082867,0.917133, 597 chr1 1650262 1650263 rs1967676 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1264.000000,3744.000000, 0.252396,0.747604, 597 chr1 1650369 1650370 rs79024828 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop,maf-5-all-pops 597 chr1 1650409 1650410 rs1967677 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TSC-CSHL, 2 C,T, 3740.000000,1268.000000, 0.746805,0.253195, 597 chr1 1650627 1650628 rs1534952 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 415.000000,4593.000000, 0.082867,0.917133, maf-5-some-pop 597 chr1 1650806 1650807 rs1137005 0 + T T C/T genomic single unknown 0 0 coding-synon,ncRNA,untranslated-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CORNELL,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,LEE,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3743.000000,1265.000000, 0.747404,0.252596, maf-5-some-pop,maf-5-all-pops 597 chr1 1650968 1650969 rs114056323 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 597 chr1 1651178 1651179 rs141346643 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4612.000000,396.000000, 0.920927,0.079074, 597 chr1 1651265 1651266 rs12137617 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1150.000000,3858.000000, 0.229633,0.770367, 597 chr1 1651334 1651335 rs139126044 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 392.000000,4616.000000, 0.078275,0.921725, 597 chr1 1651448 1651449 rs76985455 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 597 chr1 1651621 1651622 rs11260627 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SC_SNP,SSMP, 2 C,T, 1265.000000,3743.000000, 0.252596,0.747404, 597 chr1 1651630 1651631 rs12135951 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SC_SNP,SSMP, 2 G,T, 1508.000000,3500.000000, 0.301118,0.698882, 597 chr1 1651726 1651727 rs12044811 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 3331.000000,1677.000000, 0.665136,0.334864, 597 chr1 1651747 1651748 rs12044814 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,G, 3778.000000,1230.000000, 0.754393,0.245607, 597 chr1 1651814 1651815 rs4648768 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 C,T, 3746.000000,1262.000000, 0.748003,0.251997, 597 chr1 1651900 1651901 rs4648772 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4055.000000,953.000000, 0.809704,0.190296, 597 chr1 1651910 1651911 rs4648773 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,C, 3747.000000,1261.000000, 0.748203,0.251797, 597 chr1 1651936 1651937 rs4648775 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 3749.000000,1259.000000, 0.748602,0.251398, 597 chr1 1651961 1651962 rs4648776 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 3760.000000,1248.000000, 0.750799,0.249201, 597 chr1 1651986 1651987 rs4475690 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 415.000000,4593.000000, 0.082867,0.917133, 597 chr1 1652135 1652135 rs113766033 0 + - - -/TTA genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER, 2 -,TTA, 1265.000000,3743.000000, 0.252596,0.747404, 597 chr1 1652225 1652226 rs4648777 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 1264.000000,3744.000000, 0.252396,0.747604, 597 chr1 1652297 1652298 rs72909039 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 110.000000,4898.000000, 0.021965,0.978035, 597 chr1 1652563 1652564 rs139939809 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 A,G, 196.000000,4812.000000, 0.039137,0.960863, 597 chr1 1652739 1652740 rs80225745 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 597 chr1 1652774 1652775 rs74045995 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 415.000000,4593.000000, 0.082867,0.917133, maf-5-some-pop,maf-5-all-pops 597 chr1 1653027 1653028 rs16825265 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1265.000000,3743.000000, 0.252596,0.747404, maf-5-some-pop 597 chr1 1653092 1653093 rs17424353 0 - A A C/T genomic single by-cluster,by-frequency 0.375 0.216506 ncRNA,missense,untranslated-5 exact 1 2 CANCER-GENOME,SEQUENOM, 2 C,T, 46.000000,138.000000, 0.250000,0.750000, maf-5-some-pop,maf-5-all-pops 597 chr1 1653332 1653333 rs34038185 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 10 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 3744.000000,1264.000000, 0.747604,0.252396, 597 chr1 1653360 1653361 rs2206307 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1264.000000,3744.000000, 0.252396,0.747604, 597 chr1 1653413 1653414 rs2206308 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1264.000000,3744.000000, 0.252396,0.747604, 597 chr1 1653798 1653799 rs2223485 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,PJP,SSMP,TSC-CSHL, 2 C,T, 1242.000000,3766.000000, 0.248003,0.751997, 597 chr1 1653850 1653851 rs72909040 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,TISHKOFF, 2 C,T, 114.000000,4894.000000, 0.022764,0.977236, 597 chr1 1653884 1653885 rs61777493 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 A,C, 3832.000000,1176.000000, 0.765176,0.234824, maf-5-some-pop 597 chr1 1654004 1654004 rs554589140 0 + - - -/TTTGAATATTTTTGTTAATTT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TTTGAATATTTTTGTTAATTT, 1928.000000,3080.000000, 0.384984,0.615016, 597 chr1 1654012 1654013 rs74045997 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,SSMP, 2 C,G, 1706.000000,3302.000000, 0.340655,0.659345, maf-5-some-pop,maf-5-all-pops 597 chr1 1654037 1654038 rs61777494 0 + G G A/G genomic single unknown 0 0 intron exact 1 NonIntegerChromCount 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,PJP,SSMP, 2 A,G, 250.871002,44.834999, 0.848380,0.151620, maf-5-some-pop,maf-5-all-pops 597 chr1 1654057 1654058 rs61777495 0 + C C C/T genomic single unknown 0 0 intron exact 1 NonIntegerChromCount 7 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI, 2 C,T, 29.892000,290.108002, 0.093413,0.906588, maf-5-some-pop,maf-5-all-pops 597 chr1 1654063 1654064 rs200615789 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,CLINSEQ_SNP,GMI, 2 A,T, 1667.000000,3341.000000, 0.332867,0.667133, maf-5-some-pop,maf-5-all-pops 597 chr1 1654065 1654068 rs35174499 0 + GCG GCG -/GCG genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BILGI_BIOE,GMI,LUNTER, 2 -,GCG, 3341.000000,1667.000000, 0.667133,0.332867, 597 chr1 1654379 1654382 rs200326357 0 + AAG AAG -/AAG genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,GMI,LUNTER,SSMP,WARNICH_LAB, 2 -,AAG, 3323.000000,1685.000000, 0.663538,0.336462, 597 chr1 1654440 1654441 rs535242256 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 597 chr1 1655473 1655474 rs142552274 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 4 1000GENOMES,GMI,PJP,SSMP, 2 A,G, 1363.000000,3645.000000, 0.272165,0.727835, 597 chr1 1655798 1655799 rs112500273 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3,near-gene-5,ncRNA,untranslated-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 116.000000,4892.000000, 0.023163,0.976837, 597 chr1 1655820 1655821 rs74045998 0 + T T G/T genomic single unknown 0 0 intron,near-gene-3,near-gene-5,ncRNA,untranslated-5 exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 G,T, 116.000000,4892.000000, 0.023163,0.976837, 597 chr1 1655867 1655867 rs139826626 0 + - - -/G genomic insertion unknown 0 0 intron,near-gene-3,near-gene-5,ncRNA,untranslated-5 between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,G, 4621.000000,387.000000, 0.922724,0.077276, 597 chr1 1655927 1655928 rs28649027 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3,near-gene-5,ncRNA,untranslated-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1467.000000,3541.000000, 0.292931,0.707069, maf-5-some-pop 597 chr1 1655981 1655982 rs58292287 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3,near-gene-5,ncRNA,untranslated-5 exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,G, 513.000000,4495.000000, 0.102436,0.897564, maf-5-some-pop,maf-5-all-pops 597 chr1 1656100 1656104 rs202196253 0 + GATG GATG -/GATG genomic deletion unknown 0 0 intron,near-gene-3,near-gene-5 range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,GATG, 1712.000000,3296.000000, 0.341853,0.658147, 597 chr1 1656543 1656544 rs572697118 0 + T T C/T genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 173.000000,4835.000000, 0.034545,0.965455, 597 chr1 1656777 1656778 rs148389299 0 + C C A/C genomic single unknown 0 0 near-gene-5,untranslated-3 exact 1 3 1000GENOMES,PJP,SSMP, 2 A,C, 180.000000,4828.000000, 0.035942,0.964058, 597 chr1 1657183 1657184 rs4648784 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,SC_SNP,SSMP,WI_SSAHASNP, 2 C,G, 3098.000000,1910.000000, 0.618610,0.381390, 597 chr1 1657491 1657492 rs9439501 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 3904.000000,1104.000000, 0.779553,0.220447, 597 chr1 1657545 1657546 rs57481478 0 + T T -/T genomic deletion unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,T, 3410.000000,1598.000000, 0.680911,0.319089, 597 chr1 1657564 1657565 rs11576302 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1150.000000,3858.000000, 0.229633,0.770367, 597 chr1 1657578 1657579 rs61777501 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,SSMP,TISHKOFF, 2 A,C, 94.000000,4914.000000, 0.018770,0.981230, 597 chr1 1657600 1657601 rs11589282 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1556.000000,3452.000000, 0.310703,0.689297, 597 chr1 1657601 1657602 rs192537144 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 101.000000,4907.000000, 0.020168,0.979832, 597 chr1 1657667 1657668 rs72909042 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 597 chr1 1657735 1657736 rs150041664 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 77.000000,4931.000000, 0.015375,0.984625, 597 chr1 1658081 1658082 rs181746843 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 597 chr1 1658087 1658088 rs12059077 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 329.000000,4679.000000, 0.065695,0.934305, 597 chr1 1658092 1658093 rs187195240 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 62.000000,4946.000000, 0.012380,0.987620, 597 chr1 1658129 1658130 rs12143173 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,T, 354.000000,4654.000000, 0.070687,0.929313, 597 chr1 1658300 1658301 rs112325524 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, 597 chr1 1658342 1658343 rs4648785 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 12 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1459.000000,3549.000000, 0.291334,0.708666, 597 chr1 1658497 1658498 rs138057349 0 + G G G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4940.000000,68.000000, 0.986422,0.013578, 597 chr1 1658765 1658766 rs190481913 0 + C C A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 597 chr1 1658881 1658882 rs147529197 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, 597 chr1 1659712 1659713 rs3795292 0 + G G C/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 7 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,PERLEGEN,SSMP,YUSUKE, 2 C,G, 366.000000,4642.000000, 0.073083,0.926917, maf-5-some-pop,maf-5-all-pops 597 chr1 1660125 1660126 rs909826 0 + A A A/G genomic single by-frequency 0.2112 0.246971 intron,ncRNA,untranslated-3 exact 1 NonIntegerChromCount 1 TSC-CSHL, 2 A,G, 161.919998,22.080000, 0.880000,0.120000, maf-5-some-pop,maf-5-all-pops 597 chr1 1660281 1660282 rs1061887 0 - A A A/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 597 chr1 1660640 1660641 rs148901329 0 + C C C/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 C,G, 4954.000000,54.000000, 0.989217,0.010783, 597 chr1 1660811 1660812 rs1061881 0 - A A C/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,LEE,PERLEGEN,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 41.000000,97.000000, 0.297101,0.702899, maf-5-some-pop,maf-5-all-pops 597 chr1 1660841 1660842 rs28533560 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 9 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,SSAHASNP,SSMP, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, 597 chr1 1660977 1660978 rs1972183 0 + C C A/C genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1397.000000,3611.000000, 0.278954,0.721046, 597 chr1 1661039 1661040 rs138746687 0 + G G A/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 597 chr1 1661064 1661065 rs537398256 0 + T T G/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 G,T, 142.000000,4866.000000, 0.028355,0.971645, 597 chr1 1661069 1661070 rs142767290 0 + A A A/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 A,T, 4866.000000,142.000000, 0.971645,0.028355, 597 chr1 1661086 1661087 rs536062974 0 + G G C/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 C,G, 77.000000,4931.000000, 0.015375,0.984625, 597 chr1 1661108 1661109 rs115932455 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 597 chr1 1661110 1661111 rs2377213 0 - G G C/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 2 1000GENOMES,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 597 chr1 1661189 1661190 rs149639351 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 597 chr1 1661359 1661360 rs148759083 0 + C C C/T genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 597 chr1 1661506 1661510 rs200238609 0 + GACA GACA -/GACA genomic deletion unknown 0 0 intron,ncRNA,untranslated-3 range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,GACA, 297.000000,4711.000000, 0.059305,0.940695, 597 chr1 1661529 1661529 rs552577476 0 + - - -/A genomic insertion unknown 0 0 intron,ncRNA,untranslated-3 between 1 1 1000GENOMES, 2 -,A, 4950.000000,58.000000, 0.988419,0.011582, 597 chr1 1661537 1661538 rs199960177 0 + A A A/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4631.000000,377.000000, 0.924720,0.075280, 597 chr1 1661703 1661704 rs710322 0 + A A A/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,LEE,PERLEGEN,SEQUENOM,SSMP,TSC-CSHL, 2 A,G, 3612.000000,1396.000000, 0.721246,0.278754, maf-5-some-pop,maf-5-all-pops 597 chr1 1661843 1661844 rs61777505 0 + G G C/G genomic single unknown 0 0 intron,ncRNA,untranslated-3 exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,PJP,SSMP, 2 C,G, 1379.000000,3629.000000, 0.275359,0.724641, 597 chr1 1662314 1662315 rs144341301 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,G, 4945.000000,63.000000, 0.987420,0.012580, 597 chr1 1662427 1662428 rs2281171 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1504.000000,3504.000000, 0.300319,0.699681, maf-5-some-pop 597 chr1 1662531 1662532 rs2281172 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop 597 chr1 1662813 1662814 rs61777506 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,TISHKOFF, 2 C,T, 3325.000000,1683.000000, 0.663938,0.336062, 597 chr1 1662894 1662895 rs61777507 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1503.000000,3505.000000, 0.300120,0.699880, maf-5-some-pop,maf-5-all-pops 597 chr1 1663343 1663344 rs538895701 0 + A A -/A genomic deletion unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 1 1000GENOMES, 2 -,A, 1734.000000,3274.000000, 0.346246,0.653754, 597 chr1 1663604 1663605 rs66653340 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1501.000000,3507.000000, 0.299720,0.700280, maf-5-some-pop,maf-5-all-pops 597 chr1 1663850 1663851 rs2294486 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 10 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,maf-5-all-pops 597 chr1 1663860 1663861 rs2294487 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,untranslated-3 exact 1 13 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,maf-5-all-pops 597 chr1 1664018 1664019 rs2294488 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3440.000000,1568.000000, 0.686901,0.313099, maf-5-some-pop,maf-5-all-pops 597 chr1 1664123 1664124 rs2294489 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2959.000000,2049.000000, 0.590855,0.409145, maf-5-some-pop 597 chr1 1664793 1664794 rs186695728 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 597 chr1 1664953 1664954 rs183691148 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 597 chr1 1665014 1665015 rs79125954 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 1507.000000,3501.000000, 0.300919,0.699081, 597 chr1 1665399 1665400 rs115692570 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4765.000000,243.000000, 0.951478,0.048522, 597 chr1 1665570 1665571 rs61777508 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 3332.000000,1676.000000, 0.665335,0.334665, maf-5-some-pop,maf-5-all-pops 597 chr1 1665612 1665613 rs4648764 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 3558.000000,1450.000000, 0.710463,0.289537, 597 chr1 1665701 1665702 rs2281175 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,WI_SSAHASNP,YUSUKE, 2 C,T, 1466.000000,3542.000000, 0.292732,0.707268, 597 chr1 1665739 1665740 rs2281176 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,YUSUKE, 2 C,T, 3486.000000,1522.000000, 0.696086,0.303914, 597 chr1 1665746 1665747 rs2281177 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,YUSUKE, 2 C,T, 3342.000000,1666.000000, 0.667332,0.332668, 597 chr1 1666302 1666303 rs114928632 0 + T T C/T genomic single by-frequency,by-1000genomes 0.028061 0.115078 intron exact 1 1 1000GENOMES, 2 C,T, 3.000000,115.000000, 0.025424,0.974576, 597 chr1 1666337 1666338 rs2072924 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2930.000000,2078.000000, 0.585064,0.414936, maf-5-some-pop,maf-5-all-pops 597 chr1 1666341 1666342 rs76084492 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 3579.000000,1429.000000, 0.714657,0.285343, 597 chr1 1666525 1666526 rs76143300 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop,maf-5-all-pops 597 chr1 1666614 1666615 rs2076325 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3560.000000,1448.000000, 0.710863,0.289137, maf-5-some-pop 597 chr1 1666724 1666725 rs61777510 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop,maf-5-all-pops 597 chr1 1666808 1666809 rs2076326 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,maf-5-all-pops 597 chr1 1667150 1667151 rs142246531 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 597 chr1 1667252 1667253 rs1474648 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP,TSC-CSHL, 2 C,T, 3506.000000,1502.000000, 0.700080,0.299920, 597 chr1 1667315 1667315 rs74206106 0 + - - -/A genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BGI,EVA-GONL,GMI,LUNTER,SSMP, 2 -,A, 4862.000000,146.000000, 0.970847,0.029153, 597 chr1 1667322 1667323 rs78368772 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF, 2 C,T, 3499.000000,1509.000000, 0.698682,0.301318, maf-5-some-pop,maf-5-all-pops 597 chr1 1667370 1667371 rs1474649 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1461.000000,3547.000000, 0.291733,0.708267, maf-5-some-pop,maf-5-all-pops 597 chr1 1667378 1667379 rs139753233 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 597 chr1 1667753 1667754 rs181555935 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 597 chr1 1667754 1667755 rs186040599 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 597 chr1 1667810 1667811 rs112049517 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, 597 chr1 1667891 1667892 rs112563771 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, 597 chr1 1668036 1668037 rs141295627 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 597 chr1 1668167 1668168 rs28718827 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3558.000000,1450.000000, 0.710463,0.289537, 597 chr1 1668942 1668943 rs28537345 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,C, 3372.000000,1636.000000, 0.673323,0.326677, 597 chr1 1669141 1669142 rs200672606 0 + A A A/C genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 3374.000000,1634.000000, 0.673722,0.326278, 597 chr1 1669142 1669143 rs201524780 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,GMI, 2 C,T, 3508.000000,1500.000000, 0.700479,0.299521, 597 chr1 1669227 1669228 rs11485870 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSMP, 2 C,T, 3940.000000,1068.000000, 0.786741,0.213259, 597 chr1 1669646 1669648 rs201497363 0 + CT CT -/CT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,CT, 1468.000000,3540.000000, 0.293131,0.706869, 597 chr1 1669725 1669726 rs144330443 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 597 chr1 1669733 1669734 rs61777512 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF, 2 G,T, 3564.000000,1444.000000, 0.711661,0.288339, maf-5-some-pop,maf-5-all-pops 597 chr1 1669739 1669740 rs370061358 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 214.000000,4794.000000, 0.042732,0.957268, 597 chr1 1669963 1669964 rs369037660 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 1466.000000,3542.000000, 0.292732,0.707268, 597 chr1 1670035 1670036 rs373104886 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 1400.000000,3608.000000, 0.279553,0.720447, 597 chr1 1670044 1670045 rs200217868 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 3607.000000,1401.000000, 0.720248,0.279752, 597 chr1 1670289 1670290 rs528404409 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, 597 chr1 1670536 1670537 rs199714077 0 + C C C/T genomic single by-cluster,by-frequency,by-1000genomes 0.030735 0.120095 intron exact 1 NonIntegerChromCount 3 1000GENOMES,CLINSEQ_SNP,NHLBI-ESP, 2 C,T, 1207.979980,24.024000, 0.980500,0.019500, 597 chr1 1670553 1670554 rs61777513 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,GMI,SSMP, 2 C,T, 719.000000,4289.000000, 0.143570,0.856430, 597 chr1 1671321 1671322 rs554892416 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 3500.000000,1508.000000, 0.698882,0.301118, 597 chr1 1671434 1671435 rs202170127 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 G,T, 4647.000000,361.000000, 0.927915,0.072085, 597 chr1 1671455 1671456 rs113944771 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 C,T, 3502.000000,1506.000000, 0.699281,0.300719, 597 chr1 1671519 1671520 rs530739280 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, 597 chr1 1671545 1671546 rs111371617 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 1506.000000,3502.000000, 0.300719,0.699281, 597 chr1 1671598 1671599 rs113051634 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 1506.000000,3502.000000, 0.300719,0.699281, 597 chr1 1671781 1671782 rs4648793 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3566.000000,1442.000000, 0.712061,0.287939, maf-5-some-pop,maf-5-all-pops 597 chr1 1671865 1671866 rs7364986 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,T, 1505.000000,3503.000000, 0.300519,0.699481, 597 chr1 1671949 1671950 rs190596794 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 597 chr1 1672141 1672142 rs76268422 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3690.000000,1318.000000, 0.736821,0.263179, 597 chr1 1672307 1672308 rs146700624 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 C,T, 4617.000000,391.000000, 0.921925,0.078075, 597 chr1 1672410 1672411 rs140220164 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4772.000000,236.000000, 0.952875,0.047125, 597 chr1 1672530 1672531 rs112500902 0 + T T -/T genomic deletion unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BL,BUSHMAN,GMI,SSMP, 2 -,T, 3490.000000,1518.000000, 0.696885,0.303115, 597 chr1 1672613 1672616 rs111806741 0 + TCA TCA -/TCA genomic deletion unknown 0 0 intron,near-gene-5 range 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP, 2 -,TCA, 365.000000,4643.000000, 0.072883,0.927117, 597 chr1 1672714 1672715 rs76703526 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3560.000000,1448.000000, 0.710863,0.289137, 597 chr1 1672911 1672912 rs143439549 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BL,GMI,PJP,SSMP,TISHKOFF, 2 C,T, 3637.000000,1371.000000, 0.726238,0.273762, 597 chr1 1672935 1672936 rs61777516 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 364.000000,4644.000000, 0.072684,0.927316, 597 chr1 1673171 1673172 rs75832661 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 C,T, 1690.000000,3318.000000, 0.337460,0.662540, 597 chr1 1673558 1673559 rs564427952 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 1673.000000,3335.000000, 0.334065,0.665935, 597 chr1 1673817 1673818 rs189104162 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, 597 chr1 1673871 1673872 rs201962319 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 -,A, 2159.000000,2849.000000, 0.431110,0.568890, 597 chr1 1673882 1673883 rs118182004 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,C, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 597 chr1 1673906 1673907 rs35678883 0 - G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 597 chr1 1673908 1673909 rs114645031 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 597 chr1 1674025 1674026 rs36050429 0 - G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 597 chr1 1674110 1674111 rs72634839 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3436.000000,1572.000000, 0.686102,0.313898, maf-5-some-pop,maf-5-all-pops 597 chr1 1674293 1674294 rs149725615 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 597 chr1 1674676 1674677 rs11486028 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1573.000000,3435.000000, 0.314097,0.685903, 597 chr1 1675024 1675025 rs78725082 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,GMI, 2 C,T, 1068.000000,3940.000000, 0.213259,0.786741, 597 chr1 1675025 1675025 rs373826330 0 + - - -/AC genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,AC, 4524.000000,484.000000, 0.903355,0.096645, 597 chr1 1675040 1675041 rs61774970 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,BGI,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 368.000000,4640.000000, 0.073482,0.926518, maf-5-some-pop,maf-5-all-pops 597 chr1 1675150 1675151 rs115029489 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 597 chr1 1675169 1675170 rs189976225 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, 597 chr1 1675383 1675384 rs558899786 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 597 chr1 1675937 1675938 rs76037905 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,GMI,PJP, 2 C,T, 2897.000000,2111.000000, 0.578474,0.421526, 597 chr1 1676090 1676091 rs143820282 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 3 1000GENOMES,GMI,PJP, 2 C,T, 2885.000000,2123.000000, 0.576078,0.423922, 597 chr1 1676286 1676287 rs548328846 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 85.000000,4923.000000, 0.016973,0.983027, 597 chr1 1677614 1677615 rs569419804 0 + T T -/T genomic deletion unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 -,T, 3087.000000,1921.000000, 0.616414,0.383586, 597 chr1 1677923 1677924 rs146561796 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4639.000000,369.000000, 0.926318,0.073682, 597 chr1 1677961 1677962 rs200716344 0 + T T -/T genomic deletion unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,LUNTER,SSMP, 2 -,T, 1276.000000,3732.000000, 0.254792,0.745208, 597 chr1 1678680 1678680 rs558175069 0 + - - -/A genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,A, 1898.000000,3110.000000, 0.378994,0.621006, 597 chr1 1678910 1678911 rs79755274 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,T, 3322.000000,1686.000000, 0.663339,0.336661, 597 chr1 1679128 1679129 rs372057255 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, 597 chr1 1679275 1679276 rs572572531 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 4949.000000,59.000000, 0.988219,0.011781, 597 chr1 1679812 1679813 rs183640242 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 597 chr1 1679945 1679946 rs141379754 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 74.000000,4934.000000, 0.014776,0.985224, 597 chr1 1680035 1680036 rs4648620 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3354.000000,1654.000000, 0.669728,0.330272, maf-5-some-pop,maf-5-all-pops 597 chr1 1680058 1680059 rs2992175 0 - C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 597 chr1 1680218 1680219 rs1014988 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2116.000000,2892.000000, 0.422524,0.577476, maf-5-some-pop,maf-5-all-pops 597 chr1 1680374 1680376 rs149662680 0 + TT TT -/TT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,TT, 129.000000,4879.000000, 0.025759,0.974241, 597 chr1 1680441 1680442 rs1003237 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop 597 chr1 1680520 1680521 rs191370012 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 597 chr1 1680612 1680613 rs145474533 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,G, 96.000000,4912.000000, 0.019169,0.980831, 597 chr1 1680950 1680951 rs1973906 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4642.000000,366.000000, 0.926917,0.073083, 597 chr1 1681601 1681602 rs140514862 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 597 chr1 1681850 1681851 rs371712921 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 597 chr1 1681866 1681867 rs36072825 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,BUSHMAN,EVA-GONL,SSMP, 2 C,G, 2148.000000,2860.000000, 0.428914,0.571086, 597 chr1 1683247 1683248 rs563637033 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 597 chr1 1683285 1683286 rs375630351 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4645.000000,363.000000, 0.927516,0.072484, 597 chr1 1683326 1683327 rs14390 0 - C C A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 10 ABI,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,LEE,PJP,SC_JCM,SSMP, 2 A,G, 10.000000,2.000000, 0.833333,0.166667, 597 chr1 1683419 1683420 rs8841 0 - A A A/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,CGAP-GAI,GMI,HUMANGENOME_JCVI,LEE,PJP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 597 chr1 1683564 1683565 rs17162846 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SEQUENOM,SSMP,TISHKOFF, 2 A,G, 1190.000000,3818.000000, 0.237620,0.762380, maf-5-some-pop,maf-5-all-pops 597 chr1 1684062 1684063 rs2235534 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4627.000000,381.000000, 0.923922,0.076078, maf-5-some-pop,maf-5-all-pops 597 chr1 1684168 1684169 rs7796 0 - C C C/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,LEE,PJP,SEQUENOM,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 597 chr1 1684616 1684617 rs115615710 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 597 chr1 1684757 1684758 rs2072926 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,PJP,SSMP,WI_SSAHASNP,YUSUKE, 2 A,G, 1634.000000,3374.000000, 0.326278,0.673722, maf-5-some-pop,maf-5-all-pops 597 chr1 1684772 1684773 rs78973902 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 597 chr1 1684799 1684800 rs2072927 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,PJP,SSMP,WI_SSAHASNP,YUSUKE, 2 A,G, 1633.000000,3375.000000, 0.326078,0.673922, maf-5-some-pop 597 chr1 1684878 1684879 rs115699824 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 597 chr1 1685212 1685213 rs2072928 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 1472.000000,3536.000000, 0.293930,0.706070, maf-5-some-pop 597 chr1 1685921 1685943 rs139385870 0 + CCCTGGGACCGAAGTCGCCCCA CCCTGGGACCGAAGTCGCCCCA -/CCCTGGGACCGAAGTCGCCCCA genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,GMI,LUNTER,WARNICH_LAB, 2 -,CCCTGGGACCGAAGTCGCCCCA, 1675.000000,3333.000000, 0.334465,0.665535, 597 chr1 1685958 1685959 rs116741728 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 597 chr1 1686039 1686040 rs4751 0 - G G A/C/G/T genomic single unknown 0 0 coding-synon,ncRNA,missense exact 1 SingleClassQuadAllelic 23 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SEATTLESEQ,SEQUENOM,SSAHASNP,SSMP,TISHKOFF, 4 A,C,G,T, 1249.000000,3759.000000,3759.000000,1249.000000, 0.124700,0.375300,0.375300,0.124700, maf-5-some-pop,maf-5-all-pops 597 chr1 1686080 1686081 rs75816936 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 597 chr1 1686510 1686511 rs112890544 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4888.000000,120.000000, 0.976038,0.023962, 597 chr1 1686518 1686519 rs149999285 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 70.000000,4938.000000, 0.013978,0.986022, 597 chr1 1686530 1686531 rs145255125 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4938.000000,70.000000, 0.986022,0.013978, 597 chr1 1686768 1686769 rs76477378 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 597 chr1 1686942 1686943 rs2072929 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1769.000000,3239.000000, 0.353235,0.646765, maf-5-some-pop,maf-5-all-pops 597 chr1 1686957 1686958 rs74046213 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 597 chr1 1686961 1686962 rs2076327 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3296.000000,1712.000000, 0.658147,0.341853, maf-5-some-pop,maf-5-all-pops 597 chr1 1687151 1687152 rs4648815 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1505.000000,3503.000000, 0.300519,0.699481, maf-5-some-pop,maf-5-all-pops 597 chr1 1687265 1687266 rs117239597 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop,maf-5-all-pops 597 chr1 1687283 1687284 rs74663170 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 597 chr1 1687481 1687482 rs2076328 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 G,T, 3376.000000,1632.000000, 0.674121,0.325879, maf-5-some-pop,maf-5-all-pops 597 chr1 1687790 1687791 rs72634840 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 597 chr1 1688191 1688192 rs2281173 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1870.000000,3138.000000, 0.373403,0.626597, maf-5-some-pop 597 chr1 1688383 1688384 rs79052177 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 597 chr1 1688468 1688469 rs4648623 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1434.000000,3574.000000, 0.286342,0.713658, maf-5-some-pop 597 chr1 1688512 1688513 rs4648624 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3641.000000,1367.000000, 0.727037,0.272963, maf-5-some-pop,maf-5-all-pops 597 chr1 1688578 1688579 rs116006782 0 + C C A/C genomic single unknown 0 0 intron,missense exact 1 3 1000GENOMES,EXOME_CHIP,NHLBI-ESP, 2 A,C, 63.000000,4945.000000, 0.012580,0.987420, 597 chr1 1689163 1689164 rs2235536 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3771.000000,1237.000000, 0.752995,0.247005, maf-5-some-pop 597 chr1 1689224 1689225 rs78804397 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 597 chr1 1689761 1689762 rs2235537 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 1801.000000,3207.000000, 0.359625,0.640375, maf-5-some-pop,maf-5-all-pops 597 chr1 1690126 1690126 rs79655042 0 + - - -/AC genomic insertion unknown 0 0 intron,near-gene-5 between 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER, 2 -,AC, 1430.000000,3578.000000, 0.285543,0.714457, 597 chr1 1690442 1690443 rs116018868 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 597 chr1 1690543 1690544 rs116344604 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5,missense exact 1 6 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 597 chr1 1690792 1690793 rs2235538 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1630.000000,3378.000000, 0.325479,0.674521, maf-5-some-pop,maf-5-all-pops 597 chr1 1690889 1690890 rs115639524 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 597 chr1 1691839 1691840 rs76601697 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop,maf-5-all-pops 597 chr1 1692045 1692046 rs80002433 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop,maf-5-all-pops 597 chr1 1692186 1692187 rs7366653 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,WI_SSAHASNP, 2 A,C, 87.000000,4921.000000, 0.017372,0.982628, 597 chr1 1692988 1692989 rs111366931 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 597 chr1 1693192 1693193 rs77276766 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 597 chr1 1693300 1693301 rs115032510 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop,maf-5-all-pops 597 chr1 1693725 1693726 rs17162854 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3171.000000,1837.000000, 0.633187,0.366813, maf-5-some-pop 597 chr1 1694102 1694103 rs2011384 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1232.000000,3776.000000, 0.246006,0.753994, 597 chr1 1694250 1694251 rs72634843 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop,maf-5-all-pops 597 chr1 1695073 1695075 rs201827170 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AG, 3768.000000,1240.000000, 0.752396,0.247604, 597 chr1 1695380 1695381 rs74334203 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 597 chr1 1695461 1695462 rs4648629 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1337.000000,3671.000000, 0.266973,0.733027, maf-5-some-pop,maf-5-all-pops 597 chr1 1695741 1695742 rs72634844 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 597 chr1 1695830 1695831 rs17162855 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1286.000000,3722.000000, 0.256789,0.743211, maf-5-some-pop 597 chr1 1696410 1696411 rs16825314 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop 597 chr1 1696432 1696433 rs61774979 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 512.000000,4496.000000, 0.102236,0.897764, maf-5-some-pop,maf-5-all-pops 597 chr1 1696658 1696659 rs5021859 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF, 2 A,G, 1296.000000,3712.000000, 0.258786,0.741214, maf-5-some-pop 597 chr1 1697184 1697185 rs78339347 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4833.000000,175.000000, 0.965056,0.034944, 597 chr1 1698091 1698092 rs66701417 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3206.000000,1802.000000, 0.640176,0.359824, maf-5-some-pop,maf-5-all-pops 597 chr1 1698157 1698158 rs79760588 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 597 chr1 1698806 1698807 rs4648826 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1305.000000,3703.000000, 0.260583,0.739417, maf-5-some-pop 597 chr1 1698875 1698876 rs79955828 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 A,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 597 chr1 1699200 1699201 rs4648827 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 937.000000,4071.000000, 0.187101,0.812899, maf-5-some-pop,maf-5-all-pops 597 chr1 1699553 1699554 rs112073652 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 597 chr1 1699769 1699770 rs113115694 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,A, 86.000000,4922.000000, 0.017173,0.982827, 597 chr1 1700630 1700631 rs114987731 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 597 chr1 1700846 1700847 rs150643617 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 597 chr1 1700939 1700940 rs115225674 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 597 chr1 1702435 1702436 rs12040325 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1799.000000,3209.000000, 0.359225,0.640775, maf-5-some-pop,maf-5-all-pops 597 chr1 1702480 1702480 rs200925687 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4895.000000,113.000000, 0.977436,0.022564, 597 chr1 1702493 1702494 rs11806783 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,CSHL-HAPMAP,ENSEMBL,GMI,HGSV, 2 A,T, 3462.000000,1546.000000, 0.691294,0.308706, 597 chr1 1702513 1702514 rs6658139 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP, 2 C,T, 1054.000000,3954.000000, 0.210463,0.789537, 597 chr1 1702529 1702530 rs186808967 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 597 chr1 1703224 1703225 rs76347431 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 597 chr1 1703241 1703241 rs530599061 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4175.000000,833.000000, 0.833666,0.166334, 597 chr1 1703302 1703303 rs7529918 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1800.000000,3208.000000, 0.359425,0.640575, 597 chr1 1703848 1703849 rs12038111 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1806.000000,3202.000000, 0.360623,0.639377, maf-5-some-pop,maf-5-all-pops 597 chr1 1703864 1703865 rs12038134 0 + T T A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1806.000000,3202.000000, 0.360623,0.639377, maf-5-some-pop,maf-5-all-pops 598 chr1 1704480 1704481 rs568045574 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 305.000000,4703.000000, 0.060903,0.939097, 598 chr1 1704653 1704654 rs61774982 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 935.000000,4073.000000, 0.186701,0.813299, 598 chr1 1704795 1704796 rs202197598 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,LUNTER,SSMP, 2 -,C, 2737.000000,2271.000000, 0.546526,0.453474, 598 chr1 1704825 1704826 rs181145238 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 598 chr1 1704898 1704899 rs72634845 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1800.000000,3208.000000, 0.359425,0.640575, maf-5-some-pop,maf-5-all-pops 598 chr1 1704914 1704915 rs72634846 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3204.000000,1804.000000, 0.639776,0.360224, maf-5-some-pop,maf-5-all-pops 598 chr1 1705286 1705287 rs12040826 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3204.000000,1804.000000, 0.639776,0.360224, maf-5-some-pop,maf-5-all-pops 598 chr1 1705603 1705604 rs61774983 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB, 2 A,G, 4004.000000,1004.000000, 0.799521,0.200479, maf-5-some-pop,maf-5-all-pops 598 chr1 1705746 1705747 rs6603809 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,G, 934.000000,4074.000000, 0.186502,0.813498, 598 chr1 1705772 1705773 rs6603810 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 1211.000000,3797.000000, 0.241813,0.758187, 598 chr1 1705944 1705945 rs11260629 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP, 2 C,T, 2589.000000,2419.000000, 0.516973,0.483027, 598 chr1 1706135 1706136 rs6603811 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3739.000000,1269.000000, 0.746605,0.253395, maf-5-some-pop 598 chr1 1706159 1706160 rs7531583 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2087.000000,2921.000000, 0.416733,0.583267, maf-5-some-pop,maf-5-all-pops 598 chr1 1706885 1706886 rs59555069 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 748.000000,4260.000000, 0.149361,0.850639, maf-5-some-pop,maf-5-all-pops 598 chr1 1707434 1707435 rs72909062 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 835.000000,4173.000000, 0.166733,0.833267, maf-5-some-pop,maf-5-all-pops 598 chr1 1707668 1707669 rs140241351 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 598 chr1 1707739 1707740 rs12041925 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 992.000000,4016.000000, 0.198083,0.801917, maf-5-some-pop,maf-5-all-pops 598 chr1 1707900 1707904 rs78150100 0 + AAAC AAAC -/AAAC genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AAAC, 1798.000000,3210.000000, 0.359026,0.640974, 598 chr1 1708209 1708209 rs200299664 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4638.000000,370.000000, 0.926118,0.073882, 598 chr1 1708800 1708801 rs12044597 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3204.000000,1804.000000, 0.639776,0.360224, maf-5-some-pop 598 chr1 1709118 1709119 rs116018620 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop,maf-5-all-pops 598 chr1 1709633 1709634 rs141640281 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 598 chr1 1709996 1709997 rs547761353 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 598 chr1 1710034 1710035 rs12058658 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,SC_SNP, 2 C,T, 2190.000000,2818.000000, 0.437300,0.562700, maf-5-some-pop,maf-5-all-pops 598 chr1 1710949 1710950 rs150561844 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 598 chr1 1711078 1711079 rs189008018 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1711401 1711402 rs41315680 0 + C C C/G genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 3 1000GENOMES,EVA-GONL,SI_EXO, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, 598 chr1 1711715 1711716 rs116358557 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 598 chr1 1712077 1712078 rs56400815 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SI_EXO, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 598 chr1 1712112 1712113 rs77209110 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1712229 1712230 rs10907194 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4074.000000,934.000000, 0.813498,0.186502, maf-5-some-pop,maf-5-all-pops 598 chr1 1712427 1712428 rs77787690 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop 598 chr1 1713347 1713348 rs10907195 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3141.000000,1867.000000, 0.627196,0.372804, maf-5-some-pop,maf-5-all-pops 598 chr1 1713713 1713714 rs454577 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 5008.000000,0.000000, 1.000000,0.000000, 598 chr1 1713868 1713869 rs7534617 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 939.000000,4069.000000, 0.187500,0.812500, maf-5-some-pop,maf-5-all-pops 598 chr1 1714344 1714345 rs56693667 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 805.000000,4203.000000, 0.160743,0.839257, maf-5-some-pop,maf-5-all-pops 598 chr1 1714484 1714485 rs77335922 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 G,T, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 598 chr1 1714682 1714683 rs80184361 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1715010 1715011 rs742359 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 863.000000,4145.000000, 0.172324,0.827676, maf-5-some-pop,maf-5-all-pops 598 chr1 1715023 1715024 rs78325193 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1715364 1715365 rs184079524 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 598 chr1 1715414 1715415 rs141005292 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 58.000000,4950.000000, 0.011582,0.988419, 598 chr1 1715467 1715470 rs201781160 0 + AAC AAC -/AAC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,AAC, 127.000000,4881.000000, 0.025359,0.974641, 598 chr1 1716413 1716414 rs114885257 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1716417 1716418 rs115998312 0 + T T A/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1716420 1716421 rs116310195 0 + C C C/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1717229 1717230 rs11554058 0 - T T A/G cDNA single by-cluster,by-frequency,by-hapmap 0.339042 0.233605 untranslated-3 exact 1 2 CGAP-GAI,ILLUMINA, 2 A,G, 221.000000,61.000000, 0.783688,0.216312, maf-5-some-pop,maf-5-all-pops 598 chr1 1717847 1717848 rs6659884 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA,KRIBB_YJKIM, 2 G,T, 4940.000000,68.000000, 0.986422,0.013578, 598 chr1 1717898 1717899 rs115096152 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,SSMP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 598 chr1 1718331 1718332 rs3203208 0 - T T A/C cDNA single unknown 0.0198 0.097509 untranslated-3 exact 1 NonIntegerChromCount 1 LEE, 2 A,C, 182.160004,1.840000, 0.990000,0.010000, 598 chr1 1718641 1718642 rs79370402 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 598 chr1 1719078 1719079 rs140054448 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 598 chr1 1720211 1720212 rs116566548 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 598 chr1 1720280 1720281 rs78460602 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 598 chr1 1720996 1720997 rs144857397 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1721043 1721044 rs138748377 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 598 chr1 1721280 1721281 rs114131505 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 598 chr1 1721478 1721479 rs2272908 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 3213.000000,1795.000000, 0.641573,0.358427, maf-5-some-pop 598 chr1 1721512 1721513 rs115927241 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1722611 1722611 rs112081596 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BUSHMAN, 2 -,T, 2196.000000,2812.000000, 0.438498,0.561502, 598 chr1 1722827 1722828 rs3737627 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 695.000000,4313.000000, 0.138778,0.861222, 598 chr1 1722931 1722932 rs3737628 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3215.000000,1793.000000, 0.641973,0.358027, maf-5-some-pop 598 chr1 1723030 1723031 rs9660180 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1793.000000,3215.000000, 0.358027,0.641973, maf-5-some-pop 598 chr1 1723263 1723264 rs114790496 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 598 chr1 1725015 1725016 rs80220232 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop,maf-5-all-pops 598 chr1 1725075 1725076 rs116787566 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1725260 1725261 rs7545812 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, 598 chr1 1725488 1725489 rs369687532 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 G,T, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1725625 1725626 rs9970652 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4204.000000,804.000000, 0.839457,0.160543, maf-5-some-pop,maf-5-all-pops 598 chr1 1725759 1725760 rs6690956 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4092.000000,916.000000, 0.817093,0.182907, maf-5-some-pop,maf-5-all-pops 598 chr1 1725871 1725872 rs78355299 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1725882 1725883 rs80008930 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 598 chr1 1726672 1726673 rs114620189 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 598 chr1 1726826 1726827 rs76838996 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1727190 1727190 rs112995941 0 + - - -/CAAAAAAA genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,LUNTER, 2 -,CAAAAAAA, 1207.000000,3801.000000, 0.241014,0.758986, 598 chr1 1727390 1727391 rs12069909 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop 598 chr1 1727512 1727513 rs77305511 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 598 chr1 1728686 1728687 rs6603794 0 + C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 111.000000,4897.000000, 0.022165,0.977835, maf-5-some-pop 598 chr1 1728737 1728738 rs78018528 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 132.000000,4876.000000, 0.026358,0.973642, 598 chr1 1728968 1728969 rs12034740 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1850.000000,3158.000000, 0.369409,0.630591, maf-5-some-pop 598 chr1 1728989 1728990 rs143440612 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 73.000000,4935.000000, 0.014577,0.985423, 598 chr1 1729013 1729014 rs150517225 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 598 chr1 1729983 1729984 rs77521232 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1730171 1730172 rs112649407 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 598 chr1 1730409 1730410 rs142261345 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 598 chr1 1730412 1730413 rs58795053 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4203.000000,805.000000, 0.839257,0.160743, 598 chr1 1731113 1731114 rs79406300 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 598 chr1 1732190 1732191 rs114290937 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 598 chr1 1732380 1732381 rs75311419 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1732626 1732627 rs12130589 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1036.000000,3972.000000, 0.206869,0.793131, maf-5-some-pop,maf-5-all-pops 598 chr1 1733218 1733219 rs10907185 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2248.000000,2760.000000, 0.448882,0.551118, maf-5-some-pop 598 chr1 1733959 1733960 rs144676226 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, 598 chr1 1734336 1734337 rs75622028 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,T, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop,maf-5-all-pops 598 chr1 1734846 1734847 rs116499310 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1734969 1734970 rs12077553 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3977.000000,1031.000000, 0.794129,0.205871, maf-5-some-pop,maf-5-all-pops 598 chr1 1735102 1735103 rs75289190 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 598 chr1 1736652 1736653 rs12134783 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 933.000000,4075.000000, 0.186302,0.813698, 598 chr1 1736854 1736855 rs11260613 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1203.000000,3805.000000, 0.240216,0.759784, 598 chr1 1737151 1737152 rs111474028 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 G,T, 84.000000,4924.000000, 0.016773,0.983227, 598 chr1 1737318 1737319 rs16824385 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CSHL-HAPMAP,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,T, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 598 chr1 1737899 1737900 rs17363334 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop 598 chr1 1738669 1738670 rs114125899 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, 598 chr1 1738727 1738728 rs72909072 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 598 chr1 1738739 1738740 rs113895228 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 598 chr1 1739065 1739066 rs114023517 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 598 chr1 1739442 1739443 rs138986928 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, 598 chr1 1739823 1739824 rs140880133 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,C, 122.000000,4886.000000, 0.024361,0.975639, 598 chr1 1740046 1740047 rs116467526 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1740148 1740149 rs113135363 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB, 2 A,C, 51.000000,4957.000000, 0.010184,0.989816, 598 chr1 1740254 1740255 rs7546498 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3244.000000,1764.000000, 0.647764,0.352236, 598 chr1 1740329 1740330 rs185503493 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 598 chr1 1740402 1740403 rs16825334 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4941.000000,67.000000, 0.986621,0.013379, 598 chr1 1740628 1740629 rs534065977 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 2910.000000,2098.000000, 0.581070,0.418930, 598 chr1 1740975 1740976 rs114770008 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1741515 1741516 rs10907186 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,T, 2981.000000,2027.000000, 0.595248,0.404752, 598 chr1 1741524 1741525 rs12407008 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop,maf-5-all-pops 598 chr1 1741552 1741553 rs141423206 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1741646 1741647 rs540595285 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSIP, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 598 chr1 1742106 1742110 rs376897222 0 + TTTT TTTT -/TTTT genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSIP, 2 -,TTTT, 96.000000,4912.000000, 0.019169,0.980831, 598 chr1 1742320 1742321 rs149410186 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1742471 1742472 rs116774946 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1742522 1742523 rs35577086 0 - T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,BL,GMI,HUMANGENOME_JCVI, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 598 chr1 1742677 1742678 rs139039756 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, 598 chr1 1742975 1742975 rs370902959 0 + - - -/ACA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,ACA, 4954.000000,54.000000, 0.989217,0.010783, 598 chr1 1743212 1743213 rs115302220 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1743323 1743324 rs144565266 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1743476 1743477 rs4648725 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3808.000000,1200.000000, 0.760383,0.239617, 598 chr1 1743526 1743527 rs28493218 0 + T T G/T genomic single by-cluster,by-frequency,by-hapmap 0.022596 0.103862 intron exact 1 3 ILLUMINA,KRIBB_YJKIM,SSAHASNP, 2 G,T, 4.000000,346.000000, 0.011429,0.988571, 598 chr1 1743642 1743642 rs201817483 0 + - - -/G genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,G, 4894.000000,114.000000, 0.977236,0.022764, 598 chr1 1743832 1743844 rs199638829 0 + ACACACACATAC ACACACACATAC -/ACACACACATAC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,ACACACACATAC, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1743857 1743858 rs111770071 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 598 chr1 1744106 1744107 rs6603795 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 598 chr1 1744136 1744137 rs77972617 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1744159 1744160 rs146408974 0 - C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 598 chr1 1744400 1744401 rs114476767 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1744742 1744743 rs75304780 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop,maf-5-all-pops 598 chr1 1744832 1744833 rs151320466 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 598 chr1 1744889 1744890 rs12567166 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop 598 chr1 1745072 1745073 rs75709620 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 598 chr1 1745183 1745184 rs140639063 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 598 chr1 1745725 1745726 rs16825336 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 741.000000,4267.000000, 0.147963,0.852037, maf-5-some-pop 598 chr1 1745847 1745848 rs200130207 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 51.000000,4957.000000, 0.010184,0.989816, 598 chr1 1745849 1745850 rs548599017 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 51.000000,4957.000000, 0.010184,0.989816, 598 chr1 1746115 1746116 rs115614996 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 598 chr1 1746155 1746156 rs12408690 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1193.000000,3815.000000, 0.238219,0.761781, maf-5-some-pop 598 chr1 1746252 1746253 rs560034100 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4944.000000,64.000000, 0.987220,0.012780, 598 chr1 1746254 1746254 rs200912832 0 + - - -/G genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,G, 2189.000000,2819.000000, 0.437101,0.562899, 598 chr1 1746410 1746411 rs376545546 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1746442 1746443 rs531314550 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4956.000000,52.000000, 0.989617,0.010383, 598 chr1 1746449 1746450 rs571189620 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1746474 1746475 rs556756296 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 598 chr1 1746503 1746504 rs183586159 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1746532 1746533 rs111401854 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 598 chr1 1746607 1746608 rs72909077 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 598 chr1 1746693 1746694 rs12742323 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4297.000000,711.000000, 0.858027,0.141973, maf-5-some-pop 598 chr1 1747376 1747377 rs188105188 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4935.000000,73.000000, 0.985423,0.014577, 598 chr1 1747423 1747424 rs116730237 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1747680 1747681 rs115793766 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1748198 1748199 rs141381782 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 73.000000,4935.000000, 0.014577,0.985423, 598 chr1 1748607 1748608 rs115277170 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 598 chr1 1748715 1748716 rs79432804 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1749201 1749202 rs116823785 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1749744 1749751 rs70937197 0 + AAAAAAA AAAAAAA -/AAAAAAA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,GMI, 2 -,AAAAAAA, 899.000000,4109.000000, 0.179513,0.820487, 598 chr1 1750099 1750100 rs373314045 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 598 chr1 1750101 1750102 rs552996463 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 598 chr1 1750199 1750200 rs151079424 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4935.000000,73.000000, 0.985423,0.014577, 598 chr1 1750795 1750796 rs114336896 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1751144 1751145 rs111815875 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 -,T, 1524.000000,3484.000000, 0.304313,0.695687, 598 chr1 1751263 1751264 rs6664664 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1794.000000,3214.000000, 0.358227,0.641773, maf-5-some-pop 598 chr1 1751266 1751267 rs115468499 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1751552 1751553 rs114715938 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 598 chr1 1751685 1751686 rs12140085 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, 598 chr1 1751687 1751688 rs116651185 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 598 chr1 1751775 1751776 rs11260615 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3057.000000,1951.000000, 0.610423,0.389577, 598 chr1 1751787 1751789 rs374698193 0 + CT CT -/CT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CT, 79.000000,4929.000000, 0.015775,0.984225, 598 chr1 1752956 1752957 rs115505656 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1753138 1753139 rs114264514 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1753680 1753681 rs115686533 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1753739 1753740 rs573826992 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 2888.000000,2120.000000, 0.576677,0.423323, 598 chr1 1753790 1753791 rs533499279 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4941.000000,67.000000, 0.986621,0.013379, 598 chr1 1754008 1754009 rs76367091 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 598 chr1 1754044 1754045 rs116741017 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 598 chr1 1754185 1754186 rs75163110 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1754397 1754398 rs114683835 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1754437 1754438 rs141640389 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, 598 chr1 1754456 1754457 rs143711165 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 598 chr1 1754812 1754813 rs114450528 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1755256 1755257 rs75919090 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1755258 1755259 rs79217730 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1755376 1755377 rs114872616 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1756458 1756459 rs78506386 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1757220 1757221 rs2144688 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 855.000000,4153.000000, 0.170727,0.829273, 598 chr1 1757336 1757337 rs12090110 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop 598 chr1 1758565 1758566 rs114910442 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4936.000000,72.000000, 0.985623,0.014377, 598 chr1 1758683 1758684 rs76279481 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1759025 1759026 rs9786963 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 598 chr1 1759053 1759054 rs10907187 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop,maf-5-all-pops 598 chr1 1759141 1759142 rs79701148 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1759212 1759213 rs9786942 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3214.000000,1794.000000, 0.641773,0.358227, maf-5-some-pop 598 chr1 1759746 1759747 rs79391063 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 598 chr1 1760271 1760272 rs114521235 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 598 chr1 1760988 1760989 rs12568603 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1189.000000,3819.000000, 0.237420,0.762580, maf-5-some-pop 598 chr1 1761144 1761145 rs116233074 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 598 chr1 1761335 1761336 rs1999704 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1190.000000,3818.000000, 0.237620,0.762380, 598 chr1 1761694 1761694 rs375994374 0 + - - -/TAAGT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,TAAGT, 4955.000000,53.000000, 0.989417,0.010583, 598 chr1 1761729 1761730 rs147138926 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1762004 1762005 rs11260616 0 + A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,T, 3972.000000,1036.000000, 0.793131,0.206869, maf-5-some-pop,maf-5-all-pops 598 chr1 1762013 1762014 rs7553640 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3867.000000,1141.000000, 0.772165,0.227835, maf-5-some-pop 598 chr1 1762173 1762174 rs76622795 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop,maf-5-all-pops 598 chr1 1762237 1762238 rs116526402 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 598 chr1 1762516 1762517 rs139772632 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 598 chr1 1762697 1762698 rs6603796 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4487.000000,521.000000, 0.895966,0.104034, 598 chr1 1762775 1762776 rs114768911 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1762805 1762806 rs78968783 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1763695 1763696 rs78974083 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1763773 1763774 rs11589067 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SI_EXO, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop 598 chr1 1763926 1763930 rs144269011 0 + GAGA GAGA -/GAGA genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,GAGA, 83.000000,4925.000000, 0.016573,0.983427, 598 chr1 1764634 1764635 rs78015446 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,C, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 598 chr1 1765582 1765583 rs6603797 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3820.000000,1188.000000, 0.762780,0.237220, maf-5-some-pop 598 chr1 1766093 1766094 rs6663586 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,C, 4075.000000,933.000000, 0.813698,0.186302, maf-5-some-pop,maf-5-all-pops 598 chr1 1766182 1766183 rs182203125 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1766358 1766359 rs6603798 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1192.000000,3816.000000, 0.238019,0.761981, 598 chr1 1766855 1766856 rs114622732 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 598 chr1 1767141 1767142 rs12023266 0 + C C C/T genomic single by-cluster,by-frequency,by-hapmap 0.447929 0.152722 intron exact 1 3 ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 332.000000,170.000000, 0.661355,0.338645, 598 chr1 1767271 1767272 rs76901163 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 598 chr1 1767564 1767565 rs61422524 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,TISHKOFF, 2 A,C, 1919.000000,3089.000000, 0.383187,0.616813, maf-5-some-pop,maf-5-all-pops 598 chr1 1768621 1768623 rs142815288 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,TG, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1768659 1768660 rs10752417 0 + C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1258.000000,3750.000000, 0.251198,0.748802, maf-5-some-pop 598 chr1 1768778 1768779 rs11260617 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4185.000000,823.000000, 0.835663,0.164337, 598 chr1 1768809 1768810 rs191107408 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1768893 1768894 rs10907188 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4141.000000,867.000000, 0.826877,0.173123, 598 chr1 1769171 1769172 rs116270024 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 598 chr1 1769349 1769350 rs116128984 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 598 chr1 1769888 1769888 rs112843995 0 + - - -/T genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,SSMP, 2 -,T, 4057.000000,951.000000, 0.810104,0.189896, 598 chr1 1770057 1770058 rs6603799 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3821.000000,1187.000000, 0.762979,0.237021, 598 chr1 1770177 1770178 rs115234004 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1770380 1770381 rs114643605 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 103.000000,4905.000000, 0.020567,0.979433, 598 chr1 1770428 1770429 rs77197462 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 598 chr1 1770698 1770699 rs78920574 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1770736 1770737 rs114564133 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 598 chr1 1770788 1770789 rs6665287 0 + T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 A,T, 966.000000,4042.000000, 0.192891,0.807109, maf-5-some-pop,maf-5-all-pops 598 chr1 1770946 1770947 rs114632912 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1770957 1770958 rs115096416 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1771101 1771102 rs111454799 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, 598 chr1 1771283 1771284 rs116224680 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,T, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1771482 1771482 rs566759674 0 + - - -/A genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,A, 4182.000000,826.000000, 0.835064,0.164936, 598 chr1 1771715 1771716 rs112713962 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4922.000000,86.000000, 0.982827,0.017173, 598 chr1 1772409 1772410 rs114416938 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1772734 1772735 rs10907189 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3791.000000,1217.000000, 0.756989,0.243011, 598 chr1 1773651 1773652 rs11260618 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3917.000000,1091.000000, 0.782149,0.217851, 598 chr1 1773659 1773660 rs11260619 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3920.000000,1088.000000, 0.782748,0.217252, 598 chr1 1773664 1773665 rs11260620 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,SC_SNP,TISHKOFF, 2 C,T, 1046.000000,3962.000000, 0.208866,0.791134, 598 chr1 1773673 1773674 rs61025842 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 A,C, 2664.000000,2344.000000, 0.531949,0.468051, 598 chr1 1773675 1773676 rs11260621 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1054.000000,3954.000000, 0.210463,0.789537, 598 chr1 1773771 1773772 rs10907190 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1040.000000,3968.000000, 0.207668,0.792332, 598 chr1 1773841 1773842 rs138413706 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 116.000000,4892.000000, 0.023163,0.976837, 598 chr1 1773991 1773992 rs114351831 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1774776 1774777 rs144696618 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 598 chr1 1774819 1774820 rs10907191 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3242.000000,1766.000000, 0.647364,0.352636, maf-5-some-pop,maf-5-all-pops 598 chr1 1775174 1775175 rs11260622 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 393.000000,4615.000000, 0.078474,0.921526, maf-5-some-pop 598 chr1 1775424 1775425 rs182756485 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1775830 1775831 rs66531711 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,PJP,SSMP, 2 -,A, 4219.000000,789.000000, 0.842452,0.157548, 598 chr1 1776036 1776037 rs116405173 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 598 chr1 1776268 1776269 rs4648727 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1817.000000,3191.000000, 0.362819,0.637181, maf-5-some-pop,maf-5-all-pops 598 chr1 1776319 1776320 rs140690809 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 598 chr1 1776334 1776335 rs72634852 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 598 chr1 1776739 1776740 rs111291999 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB, 2 A,C, 398.000000,4610.000000, 0.079473,0.920527, 598 chr1 1776884 1776885 rs181094422 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1777076 1777077 rs115361377 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 598 chr1 1777261 1777263 rs577779841 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AT, 57.000000,4951.000000, 0.011382,0.988618, 598 chr1 1778007 1778007 rs201437769 0 + - - -/AATC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AATC, 4953.000000,55.000000, 0.989018,0.010982, 598 chr1 1778089 1778090 rs12126768 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 821.000000,4187.000000, 0.163938,0.836062, maf-5-some-pop,maf-5-all-pops 598 chr1 1778180 1778181 rs115052411 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 G,T, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 598 chr1 1778468 1778469 rs6687065 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,TISHKOFF, 2 A,G, 3242.000000,1766.000000, 0.647364,0.352636, maf-5-some-pop 598 chr1 1778732 1778732 rs146304107 0 + - - -/CAACAAAATCCCTTTTT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CAACAAAATCCCTTTTT, 4855.000000,153.000000, 0.969449,0.030551, 598 chr1 1779035 1779036 rs6692959 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3804.000000,1204.000000, 0.759585,0.240415, maf-5-some-pop 598 chr1 1779175 1779176 rs75713516 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 598 chr1 1779660 1779660 rs565045085 0 + - - -/AA genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AA, 4956.000000,52.000000, 0.989617,0.010383, 598 chr1 1780449 1780450 rs549129150 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 55.000000,4953.000000, 0.010982,0.989018, 598 chr1 1780877 1780878 rs6603801 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3790.000000,1218.000000, 0.756789,0.243211, maf-5-some-pop 598 chr1 1780993 1780994 rs115508374 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1781219 1781220 rs6681938 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,T, 815.000000,4193.000000, 0.162740,0.837260, maf-5-some-pop 598 chr1 1781344 1781345 rs6664578 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4617.000000,391.000000, 0.921925,0.078075, maf-5-some-pop 598 chr1 1781431 1781431 rs146918756 0 + - - -/G genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,G, 4650.000000,358.000000, 0.928514,0.071486, 598 chr1 1782304 1782305 rs116808015 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 598 chr1 1782564 1782565 rs6668338 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1782619 1782620 rs12066667 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4027.000000,981.000000, 0.804113,0.195887, 598 chr1 1782774 1782775 rs6670838 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1782853 1782854 rs61558279 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,GMI,HGSV,SSMP, 2 -,A, 2126.000000,2882.000000, 0.424521,0.575479, 598 chr1 1783200 1783201 rs12402876 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 868.000000,4140.000000, 0.173323,0.826677, maf-5-some-pop,maf-5-all-pops 598 chr1 1783219 1783220 rs146436410 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 598 chr1 1783437 1783438 rs61774994 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,EVA-GONL,TISHKOFF, 2 A,C, 112.000000,4896.000000, 0.022364,0.977636, 598 chr1 1783583 1783584 rs7526236 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 865.000000,4143.000000, 0.172724,0.827276, maf-5-some-pop,maf-5-all-pops 598 chr1 1783594 1783595 rs114856941 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 598 chr1 1783689 1783690 rs115692047 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 598 chr1 1783693 1783694 rs368543681 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 598 chr1 1783824 1783825 rs191621683 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1783865 1783866 rs183181840 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1786171 1786172 rs57662477 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 598 chr1 1786314 1786315 rs115145163 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1786576 1786577 rs146253830 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, 598 chr1 1786683 1786684 rs12125178 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 779.000000,4229.000000, 0.155551,0.844449, 598 chr1 1786760 1786760 rs556355203 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 4261.000000,747.000000, 0.850839,0.149161, 598 chr1 1786877 1786878 rs142505707 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 598 chr1 1786944 1786945 rs145923893 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1787803 1787804 rs111982373 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB, 2 C,G, 4852.000000,156.000000, 0.968850,0.031150, maf-5-some-pop,maf-5-all-pops 598 chr1 1788685 1788685 rs71578345 0 + - - -/AA genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI,LUNTER,SSMP, 2 -,AA, 4232.000000,776.000000, 0.845048,0.154952, 598 chr1 1788744 1788744 rs71578346 0 + - - -/GGCT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,HUMANGENOME_JCVI,LUNTER, 2 -,GGCT, 4238.000000,770.000000, 0.846246,0.153754, 598 chr1 1789687 1789688 rs114125058 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1790266 1790267 rs113689229 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 G,T, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 598 chr1 1791212 1791213 rs116116333 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1791221 1791222 rs141141462 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1791225 1791226 rs150728956 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 598 chr1 1791495 1791496 rs566270950 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,A, 101.000000,4907.000000, 0.020168,0.979832, 598 chr1 1792214 1792215 rs72634855 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 598 chr1 1792405 1792406 rs192492738 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1792494 1792495 rs111300901 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 598 chr1 1792668 1792669 rs77808738 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1792917 1792917 rs144259647 0 + - - -/AAA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,AAA, 4956.000000,52.000000, 0.989617,0.010383, 598 chr1 1793070 1793071 rs12076620 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1201.000000,3807.000000, 0.239816,0.760184, maf-5-some-pop 598 chr1 1793110 1793111 rs10907192 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1202.000000,3806.000000, 0.240016,0.759984, maf-5-some-pop 598 chr1 1793211 1793212 rs16824500 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, maf-5-some-pop 598 chr1 1793520 1793521 rs114834002 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1793627 1793628 rs111295491 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop,maf-5-all-pops 598 chr1 1793691 1793692 rs77270684 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,ILLUMINA, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 598 chr1 1793843 1793844 rs58775734 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,ILLUMINA, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 598 chr1 1794062 1794062 rs146719614 0 + - - -/CT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,CT, 4956.000000,52.000000, 0.989617,0.010383, 598 chr1 1795130 1795131 rs116790119 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1795316 1795317 rs75570202 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1795486 1795487 rs6660452 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1204.000000,3804.000000, 0.240415,0.759585, 598 chr1 1795788 1795789 rs12036384 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,SC_SNP,TISHKOFF, 2 C,T, 4119.000000,889.000000, 0.822484,0.177516, maf-5-some-pop,maf-5-all-pops 598 chr1 1795908 1795909 rs77546342 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1796126 1796126 rs150997348 0 + - - -/A genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 4927.000000,81.000000, 0.983826,0.016174, 598 chr1 1796423 1796424 rs115445275 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1796615 1796616 rs6698147 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 814.000000,4194.000000, 0.162540,0.837460, 598 chr1 1796705 1796706 rs183371769 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4955.000000,53.000000, 0.989417,0.010583, 598 chr1 1796716 1796717 rs12134553 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,C, 3059.000000,1949.000000, 0.610823,0.389177, 598 chr1 1796791 1796792 rs150326912 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 598 chr1 1797570 1797571 rs116170979 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1797946 1797947 rs9660106 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3198.000000,1810.000000, 0.638578,0.361422, maf-5-some-pop 598 chr1 1798566 1798567 rs141874993 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 598 chr1 1799884 1799885 rs149747421 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 4956.000000,52.000000, 0.989617,0.010383, 598 chr1 1799952 1799953 rs7516995 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4154.000000,854.000000, 0.829473,0.170527, 598 chr1 1800167 1800168 rs192606742 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 598 chr1 1800363 1800364 rs56044478 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, 598 chr1 1800624 1800624 rs565741769 0 + - - -/AA genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AA, 3169.000000,1839.000000, 0.632788,0.367212, 598 chr1 1801033 1801034 rs4648592 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 820.000000,4188.000000, 0.163738,0.836262, maf-5-some-pop,maf-5-all-pops 598 chr1 1802171 1802172 rs6666068 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1202.000000,3806.000000, 0.240016,0.759984, 598 chr1 1802664 1802665 rs114305021 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1803227 1803228 rs111755815 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, 598 chr1 1803390 1803391 rs114225097 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1803779 1803780 rs79118358 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1804425 1804426 rs116332142 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1804778 1804779 rs78086130 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1805390 1805391 rs10907193 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop 598 chr1 1805773 1805774 rs72911014 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 598 chr1 1805857 1805858 rs147105313 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,EVA-GONL, 2 C,G, 229.000000,4779.000000, 0.045727,0.954273, 598 chr1 1805880 1805881 rs12085733 0 + C C C/T genomic single by-cluster,by-frequency,by-hapmap 0.168947 0.236496 intron exact 1 3 ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 662.000000,68.000000, 0.906849,0.093151, maf-5-some-pop 598 chr1 1806294 1806295 rs114117300 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 598 chr1 1806305 1806306 rs10399762 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1216.000000,3792.000000, 0.242812,0.757188, maf-5-some-pop 598 chr1 1806705 1806706 rs141122345 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1807284 1807285 rs558591260 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 598 chr1 1807321 1807322 rs114210081 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, maf-5-some-pop,maf-5-all-pops 598 chr1 1807327 1807328 rs114022864 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop,maf-5-all-pops 598 chr1 1807722 1807723 rs113384712 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 G,T, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 598 chr1 1807931 1807931 rs71574350 0 + - - -/GA genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BILGI_BIOE,BUSHMAN,HUMANGENOME_JCVI,LUNTER, 2 -,GA, 4176.000000,832.000000, 0.769465,0.230535, 598 chr1 1808378 1808379 rs76829720 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 598 chr1 1808501 1808502 rs184292844 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1808768 1808769 rs4648729 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,WI_SSAHASNP, 2 C,T, 1959.000000,3049.000000, 0.391174,0.608826, 598 chr1 1808903 1808904 rs114472656 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 598 chr1 1809122 1809123 rs76906237 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1809508 1809509 rs11260624 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4121.000000,887.000000, 0.822883,0.177117, maf-5-some-pop,maf-5-all-pops 598 chr1 1809653 1809654 rs78934919 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 598 chr1 1810089 1810090 rs7525092 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4020.000000,988.000000, 0.802716,0.197284, maf-5-some-pop,maf-5-all-pops,microattr-tpa 598 chr1 1810782 1810783 rs76555215 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 103.000000,4905.000000, 0.020567,0.979433, 598 chr1 1810926 1810927 rs112522584 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 598 chr1 1810930 1810931 rs143698344 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 598 chr1 1811120 1811121 rs12133865 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, 598 chr1 1811629 1811630 rs188425605 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1811941 1811942 rs115042250 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 598 chr1 1812032 1812033 rs59911761 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SSMP, 2 A,T, 4097.000000,911.000000, 0.818091,0.181909, maf-5-some-pop,maf-5-all-pops 598 chr1 1812034 1812035 rs12729990 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,PJP,SSAHASNP,SSMP, 2 A,T, 1835.000000,3173.000000, 0.366414,0.633586, maf-5-some-pop,maf-5-all-pops 598 chr1 1812327 1812328 rs114275086 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 598 chr1 1812445 1812447 rs142445070 0 + GA GA -/GA genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,GA, 892.000000,4116.000000, 0.178115,0.821885, 598 chr1 1812520 1812521 rs6603802 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3151.000000,1857.000000, 0.629193,0.370807, maf-5-some-pop,maf-5-all-pops 598 chr1 1812687 1812688 rs6603803 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3202.000000,1806.000000, 0.639377,0.360623, maf-5-some-pop 598 chr1 1812827 1812828 rs6670776 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3789.000000,1219.000000, 0.756589,0.243411, maf-5-some-pop 598 chr1 1812867 1812867 rs547536128 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 2862.000000,2146.000000, 0.571486,0.428514, 598 chr1 1812990 1812991 rs75116681 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop,maf-5-all-pops 598 chr1 1813362 1813363 rs114635430 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 598 chr1 1813422 1813423 rs116426298 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 598 chr1 1813887 1813888 rs187158897 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,TISHKOFF, 2 A,G, 4294.000000,714.000000, 0.857428,0.142572, 598 chr1 1813994 1813995 rs116231871 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 598 chr1 1815349 1815350 rs78916993 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 598 chr1 1815621 1815622 rs12138152 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 995.000000,4013.000000, 0.198682,0.801318, 598 chr1 1816049 1816050 rs114567828 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1816734 1816735 rs57591848 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 598 chr1 1816777 1816778 rs181942263 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1816883 1816887 rs111906587 0 + TAGA TAGA -/TAGA genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TAGA, 919.000000,4089.000000, 0.183506,0.816494, 598 chr1 1816961 1816962 rs116347388 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1817026 1817027 rs190784408 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1817169 1817170 rs10796396 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 3790.000000,1218.000000, 0.756789,0.243211, 598 chr1 1818128 1818129 rs16824526 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4204.000000,804.000000, 0.839457,0.160543, maf-5-some-pop,maf-5-all-pops 598 chr1 1818238 1818239 rs6688470 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1810.000000,3198.000000, 0.361422,0.638578, 598 chr1 1818245 1818246 rs143157031 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 598 chr1 1818268 1818269 rs187901491 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,T, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1818290 1818291 rs146680480 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 598 chr1 1818644 1818645 rs57222601 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 169.000000,4839.000000, 0.033746,0.966254, 598 chr1 1818799 1818800 rs112244991 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,ILLUMINA, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 598 chr1 1819377 1819378 rs6603804 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 3793.000000,1215.000000, 0.757388,0.242612, maf-5-some-pop 598 chr1 1819759 1819760 rs115277363 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 598 chr1 1819821 1819821 rs541274416 0 + - - -/G genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,G, 4164.000000,844.000000, 0.831470,0.168530, 598 chr1 1820094 1820095 rs141694341 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 598 chr1 1820105 1820106 rs28608797 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4107.000000,901.000000, 0.820088,0.179912, 598 chr1 1820695 1820699 rs140209380 0 + TTAA TTAA -/TTAA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,TTAA, 133.000000,4875.000000, 0.026557,0.973442, 598 chr1 1821098 1821099 rs563709342 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 729.000000,4279.000000, 0.145567,0.854433, 598 chr1 1821624 1821625 rs6603805 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 992.000000,4016.000000, 0.198083,0.801917, maf-5-some-pop,maf-5-all-pops 598 chr1 1821910 1821911 rs184495980 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4709.000000,299.000000, 0.940296,0.059705, 598 chr1 1822208 1822209 rs6676565 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,GMI, 2 C,T, 4092.000000,916.000000, 0.817093,0.182907, 598 chr1 1822813 1822814 rs114158894 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 598 chr1 1822883 1822884 rs575690132 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 -,G, 2142.000000,2866.000000, 0.427716,0.572284, 598 chr1 1823093 1823093 rs138986851 0 + - - -/AGAG genomic insertion unknown 0 0 near-gene-5 between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,AGAG, 3198.000000,1810.000000, 0.638578,0.361422, 598 chr1 1823365 1823366 rs75718362 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 598 chr1 1823523 1823524 rs3806168 0 - G G C/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 598 chr1 1823921 1823922 rs6688000 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1176.000000,3832.000000, 0.234824,0.765176, maf-5-some-pop 598 chr1 1824368 1824369 rs114925249 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 598 chr1 1827211 1827212 rs12093735 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop 598 chr1 1827255 1827256 rs79467228 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 598 chr1 1827318 1827319 rs57590079 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 598 chr1 1827835 1827836 rs144707439 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 -,T, 1320.000000,3688.000000, 0.263578,0.736422, 598 chr1 1828131 1828132 rs60759663 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 598 chr1 1828156 1828157 rs547320383 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 2982.000000,2026.000000, 0.595447,0.404553, 598 chr1 1828353 1828354 rs141601994 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 598 chr1 1828487 1828488 rs183890190 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, 598 chr1 1828491 1828492 rs11811174 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, 598 chr1 1828563 1828564 rs188608475 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,C, 63.000000,4945.000000, 0.012580,0.987420, 598 chr1 1828626 1828627 rs545943918 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 598 chr1 1828763 1828764 rs12045595 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 852.000000,4156.000000, 0.170128,0.829872, maf-5-some-pop,maf-5-all-pops 598 chr1 1828809 1828809 rs76742492 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,G, 4934.000000,74.000000, 0.985224,0.014776, 598 chr1 1828848 1828849 rs115642613 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 598 chr1 1829136 1829137 rs554784240 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 116.000000,4892.000000, 0.023163,0.976837, 598 chr1 1829423 1829424 rs6603807 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4083.000000,925.000000, 0.815296,0.184704, maf-5-some-pop,maf-5-all-pops 598 chr1 1829774 1829775 rs113440426 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 598 chr1 1829811 1829812 rs78910765 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 598 chr1 1830106 1830106 rs113346839 0 + - - -/GC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,BUSHMAN, 2 -,GC, 4160.000000,848.000000, 0.830671,0.169329, 598 chr1 1830150 1830151 rs71511317 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,T, 4277.000000,731.000000, 0.854034,0.145966, 598 chr1 1830332 1830333 rs61504443 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 598 chr1 1830626 1830627 rs71630945 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop,maf-5-all-pops 598 chr1 1830956 1830957 rs77699445 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 598 chr1 1831011 1831012 rs7542410 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3237.000000,1771.000000, 0.646366,0.353634, maf-5-some-pop,maf-5-all-pops 598 chr1 1831178 1831179 rs138293012 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,LUNTER, 2 -,G, 59.000000,4949.000000, 0.011781,0.988219, 598 chr1 1831599 1831600 rs77077589 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 598 chr1 1832067 1832068 rs144903156 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 598 chr1 1832090 1832091 rs189766493 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 598 chr1 1832165 1832166 rs138649884 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 278.000000,4730.000000, 0.055511,0.944489, 598 chr1 1832247 1832248 rs111546093 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4815.000000,193.000000, 0.961462,0.038538, 598 chr1 1832628 1832629 rs141917057 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 4 1000GENOMES,LUNTER,SSMP,WARNICH_LAB, 2 -,A, 82.000000,4926.000000, 0.016374,0.983626, 598 chr1 1832700 1832701 rs4648730 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3231.000000,1777.000000, 0.645168,0.354832, maf-5-some-pop 598 chr1 1832824 1832825 rs7548509 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1777.000000,3231.000000, 0.354832,0.645168, maf-5-some-pop 598 chr1 1832882 1832883 rs80127355 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 598 chr1 1833187 1833188 rs115213936 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 598 chr1 1833481 1833482 rs77179726 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 598 chr1 1833494 1833495 rs10454464 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1046.000000,3962.000000, 0.208866,0.791134, maf-5-some-pop,maf-5-all-pops 598 chr1 1833506 1833507 rs72634863 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, 598 chr1 1833757 1833757 rs557514461 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 3309.000000,1699.000000, 0.660743,0.339257, 598 chr1 1833877 1833878 rs9662595 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3230.000000,1778.000000, 0.644968,0.355032, 598 chr1 1833919 1833920 rs112283380 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 1778.000000,3230.000000, 0.355032,0.644968, 598 chr1 1834117 1834118 rs34520316 0 - T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ABI,EVA-GONL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 598 chr1 1834357 1834358 rs147311048 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4918.000000,90.000000, 0.982029,0.017971, 598 chr1 1834747 1834748 rs4648731 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3454.000000,1554.000000, 0.689696,0.310304, maf-5-some-pop,maf-5-all-pops 598 chr1 1834986 1834987 rs149801426 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 599 chr1 1835041 1835042 rs11260625 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 875.000000,4133.000000, 0.174720,0.825280, 599 chr1 1835055 1835056 rs11260626 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4133.000000,875.000000, 0.825280,0.174720, 599 chr1 1835404 1835405 rs113733717 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 124.000000,4884.000000, 0.024760,0.975240, 599 chr1 1836685 1836686 rs2748989 0 - C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1837024 1837025 rs2803290 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3231.000000,1777.000000, 0.645168,0.354832, 599 chr1 1837877 1837878 rs4648732 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3831.000000,1177.000000, 0.764976,0.235024, maf-5-some-pop,maf-5-all-pops 599 chr1 1837975 1837976 rs60117337 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 599 chr1 1838172 1838173 rs28625223 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop 599 chr1 1838309 1838310 rs28581849 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 599 chr1 1838373 1838374 rs28691882 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4351.000000,657.000000, 0.868810,0.131190, maf-5-some-pop,maf-5-all-pops 599 chr1 1838515 1838516 rs2377037 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 652.000000,4356.000000, 0.130192,0.869808, maf-5-some-pop 599 chr1 1838637 1838638 rs28672079 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4032.000000,976.000000, 0.805112,0.194888, maf-5-some-pop,maf-5-all-pops 599 chr1 1839058 1839059 rs59673273 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 599 chr1 1839251 1839252 rs546771788 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 599 chr1 1839439 1839440 rs148775130 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 599 chr1 1839884 1839885 rs72911041 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop,maf-5-all-pops 599 chr1 1840513 1840514 rs751993 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TSC-CSHL, 2 C,G, 91.000000,4917.000000, 0.018171,0.981829, 599 chr1 1840676 1840677 rs4298676 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SC_JCM,SSMP, 2 A,G, 1793.000000,3215.000000, 0.358027,0.641973, 599 chr1 1841069 1841070 rs377019885 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,C, 54.000000,4954.000000, 0.010783,0.989217, 599 chr1 1841807 1841808 rs71630946 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 876.000000,4132.000000, 0.174920,0.825080, maf-5-some-pop,maf-5-all-pops 599 chr1 1841814 1841815 rs28659907 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 G,T, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop 599 chr1 1842630 1842631 rs72911047 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 599 chr1 1843238 1843239 rs143149608 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 150.000000,4858.000000, 0.029952,0.970048, 599 chr1 1843538 1843539 rs151166119 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, 599 chr1 1843578 1843579 rs4648594 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1166.000000,3842.000000, 0.232827,0.767173, maf-5-some-pop,maf-5-all-pops 599 chr1 1844421 1844422 rs111616474 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,T, 1160.000000,3848.000000, 0.231629,0.768371, 599 chr1 1844696 1844697 rs115066853 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, 599 chr1 1845357 1845358 rs115819238 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 599 chr1 1845842 1845843 rs112504725 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,NHLBI-ESP,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop,maf-5-all-pops 599 chr1 1845859 1845860 rs80221530 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 599 chr1 1846460 1846461 rs41306992 0 + C C C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3924.000000,1084.000000, 0.783546,0.216454, maf-5-some-pop,maf-5-all-pops 599 chr1 1847530 1847531 rs28710181 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3899.000000,1109.000000, 0.778554,0.221446, maf-5-some-pop 599 chr1 1847803 1847804 rs41315318 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SI_EXO,TISHKOFF, 2 G,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop 599 chr1 1847978 1847979 rs28581776 0 + T T C/T genomic single unknown 0 0 missense exact 1 19 1000GENOMES,ABI,APPLERA_GI,BGI,BL,BUSHMAN,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1075.000000,3933.000000, 0.214657,0.785343, maf-5-some-pop 599 chr1 1848108 1848109 rs2803296 0 - G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1848120 1848121 rs28472657 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,G, 407.000000,4601.000000, 0.081270,0.918730, maf-5-some-pop 599 chr1 1848159 1848160 rs28634421 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3920.000000,1088.000000, 0.782748,0.217252, maf-5-some-pop 599 chr1 1848832 1848832 rs5772055 0 + - - -/AC genomic insertion unknown 0 0 intron,near-gene-3 between 1 4 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER, 2 -,AC, 3921.000000,1087.000000, 0.782947,0.217053, 599 chr1 1848937 1848938 rs115463467 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 599 chr1 1849529 1849530 rs4459050 0 + T T C/T genomic single unknown 0 0 missense exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,CLINSEQ_SNP,CORNELL,EVA-GONL,EXOME_CHIP,HGSV,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,T, 1081.000000,3927.000000, 0.215855,0.784145, maf-5-some-pop 599 chr1 1849922 1849923 rs72634869 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA, 2 A,C, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop,maf-5-all-pops 599 chr1 1850627 1850636 rs575852588 0 + AGCGGCAGG AGCGGCAGG -/AGCGGCAGG genomic deletion unknown 0 0 cds-indel range 1 1 1000GENOMES, 2 -,AGCGGCAGG, 1798.000000,3210.000000, 0.359026,0.640974, 599 chr1 1850895 1850896 rs28396793 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSAHASNP, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 599 chr1 1850913 1850914 rs28544952 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,ILLUMINA,SSAHASNP,SSMP, 2 A,G, 3921.000000,1087.000000, 0.782947,0.217053, maf-5-some-pop,maf-5-all-pops 599 chr1 1850973 1850974 rs28727923 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSAHASNP, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 599 chr1 1850997 1850998 rs28642056 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,SSAHASNP,TISHKOFF, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, 599 chr1 1851184 1851185 rs113425481 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 G,T, 3794.000000,1214.000000, 0.757588,0.242412, maf-5-some-pop 599 chr1 1851187 1851188 rs113934974 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BL,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3794.000000,1214.000000, 0.757588,0.242412, maf-5-some-pop 599 chr1 1851211 1851212 rs28706999 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3916.000000,1092.000000, 0.781949,0.218051, maf-5-some-pop,maf-5-all-pops 599 chr1 1852483 1852484 rs28508199 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 18 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2767.000000,2241.000000, 0.552516,0.447484, maf-5-some-pop,maf-5-all-pops 599 chr1 1853383 1853384 rs28622894 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1061.000000,3947.000000, 0.211861,0.788139, maf-5-some-pop,maf-5-all-pops 599 chr1 1853862 1853863 rs28680721 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1220.000000,3788.000000, 0.243610,0.756390, maf-5-some-pop,maf-5-all-pops 599 chr1 1853920 1853921 rs28692556 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1211.000000,3797.000000, 0.241813,0.758187, maf-5-some-pop,maf-5-all-pops 599 chr1 1854545 1854546 rs28633659 0 + C C C/T genomic single unknown 0 0 missense exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3803.000000,1205.000000, 0.759385,0.240615, maf-5-some-pop 599 chr1 1854578 1854579 rs115047896 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 4 1000GENOMES,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,G, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop 599 chr1 1854716 1854717 rs745630 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3821.000000,1187.000000, 0.762979,0.237021, maf-5-some-pop 599 chr1 1855449 1855450 rs28423370 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 718.000000,4290.000000, 0.143371,0.856629, maf-5-some-pop 599 chr1 1855661 1855662 rs187915209 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 3189.000000,1819.000000, 0.636781,0.363219, 599 chr1 1855703 1855705 rs369481418 0 + CG CG -/CG genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,LUNTER,SSIP,SSMP, 2 -,CG, 1795.000000,3213.000000, 0.358427,0.641573, 599 chr1 1855707 1855708 rs112908077 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,GMI, 2 C,T, 3197.000000,1811.000000, 0.638379,0.361621, 599 chr1 1856226 1856227 rs752966 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 3221.000000,1787.000000, 0.643171,0.356829, maf-5-some-pop,maf-5-all-pops 599 chr1 1856459 1856460 rs554442524 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, 599 chr1 1856500 1856501 rs114516025 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 599 chr1 1856513 1856514 rs2092920 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,JMKIDD_LAB,PJP,SSMP,TSC-CSHL, 2 A,G, 1213.000000,3795.000000, 0.242212,0.757788, maf-5-some-pop,maf-5-all-pops 599 chr1 1856539 1856540 rs188945099 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 599 chr1 1856627 1856628 rs116011561 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 599 chr1 1856671 1856672 rs2092921 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TSC-CSHL, 2 C,T, 1785.000000,3223.000000, 0.356430,0.643570, 599 chr1 1856699 1856700 rs2092922 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 806.000000,4202.000000, 0.160942,0.839058, maf-5-some-pop 599 chr1 1856719 1856720 rs2092923 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,SSMP,TSC-CSHL, 2 C,T, 3224.000000,1784.000000, 0.643770,0.356230, maf-5-some-pop 599 chr1 1856727 1856728 rs572177152 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 599 chr1 1856728 1856729 rs541128382 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4957.000000,51.000000, 0.989816,0.010184, 599 chr1 1856745 1856746 rs2092924 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TSC-CSHL, 2 A,C, 1779.000000,3229.000000, 0.355232,0.644768, maf-5-some-pop,maf-5-all-pops 599 chr1 1856792 1856793 rs112502664 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 71.000000,4937.000000, 0.014177,0.985823, 599 chr1 1856916 1856917 rs72911062 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 599 chr1 1857039 1857040 rs72911067 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 599 chr1 1857101 1857102 rs56383717 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,G, 3789.000000,1219.000000, 0.756589,0.243411, maf-5-some-pop,maf-5-all-pops 599 chr1 1857210 1857211 rs28521843 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,NHLBI-ESP,SSAHASNP,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 599 chr1 1857895 1857896 rs28429519 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,ILLUMINA,SSAHASNP,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 599 chr1 1858070 1858071 rs41315326 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 G,T, 3795.000000,1213.000000, 0.757788,0.242212, maf-5-some-pop 599 chr1 1858160 1858161 rs78807865 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3802.000000,1206.000000, 0.759185,0.240815, maf-5-some-pop,maf-5-all-pops 599 chr1 1858308 1858309 rs941530 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3070.000000,1938.000000, 0.613019,0.386981, maf-5-some-pop 599 chr1 1858817 1858818 rs76536593 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 599 chr1 1859130 1859131 rs4648734 0 + C C C/T genomic single unknown 0 0 missense exact 1 15 1000GENOMES,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop,maf-5-all-pops 599 chr1 1859175 1859176 rs45489198 0 + T T C/T genomic single unknown 0 0 missense exact 1 10 1000GENOMES,BGI,BL,CLINSEQ_SNP,EVA-GONL,HGSV,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,T, 1211.000000,3797.000000, 0.241813,0.758187, maf-5-some-pop 599 chr1 1859455 1859456 rs28409617 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSAHASNP,TISHKOFF, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, 599 chr1 1859557 1859558 rs28670388 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 959.000000,4049.000000, 0.191494,0.808506, maf-5-some-pop,maf-5-all-pops 599 chr1 1859689 1859690 rs2803350 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,HGSV,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 G,T, 786.000000,4222.000000, 0.156949,0.843051, 599 chr1 1860140 1860141 rs28531873 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3789.000000,1219.000000, 0.756589,0.243411, maf-5-some-pop,maf-5-all-pops 599 chr1 1860744 1860745 rs28685049 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4050.000000,958.000000, 0.808706,0.191294, maf-5-some-pop,maf-5-all-pops 599 chr1 1860996 1860997 rs60609500 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1091.000000,3917.000000, 0.217851,0.782149, maf-5-some-pop,maf-5-all-pops 599 chr1 1861120 1861121 rs116067509 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 599 chr1 1861125 1861126 rs59997390 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4545.000000,463.000000, 0.907548,0.092452, maf-5-some-pop,maf-5-all-pops 599 chr1 1861151 1861152 rs55825112 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 958.000000,4050.000000, 0.191294,0.808706, maf-5-some-pop,maf-5-all-pops 599 chr1 1861221 1861222 rs11485871 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 599 chr1 1861342 1861343 rs2748967 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 2 C,T, 3221.000000,1787.000000, 0.643171,0.356829, maf-5-some-pop 599 chr1 1861375 1861376 rs58976884 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 3797.000000,1211.000000, 0.758187,0.241813, maf-5-some-pop 599 chr1 1861440 1861441 rs74595907 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1089.000000,3919.000000, 0.217452,0.782548, maf-5-some-pop,maf-5-all-pops 599 chr1 1861581 1861582 rs2803295 0 + C C C/T genomic single unknown 0 0 missense exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP, 2 C,T, 3226.000000,1782.000000, 0.644169,0.355831, maf-5-some-pop 599 chr1 1861893 1861894 rs116440022 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 69.000000,4939.000000, 0.013778,0.986222, 599 chr1 1862024 1862025 rs28637822 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop 599 chr1 1862328 1862329 rs28632164 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSAHASNP,TISHKOFF, 2 A,T, 78.000000,4930.000000, 0.015575,0.984425, 599 chr1 1862674 1862675 rs2474449 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 0.000000,5008.000000, 0.000000,1.000000, 599 chr1 1862912 1862913 rs28888118 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 599 chr1 1862957 1862958 rs4648595 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,WI_SSAHASNP, 2 A,G, 814.000000,4194.000000, 0.162540,0.837460, 599 chr1 1863019 1863020 rs59952083 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,BL,GMI,HGSV,LUNTER,SSMP, 2 -,A, 2983.000000,2025.000000, 0.595647,0.404353, 599 chr1 1863025 1863026 rs58087899 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,BL,GMI,HGSV, 2 A,G, 2023.000000,2985.000000, 0.403954,0.596046, 599 chr1 1863057 1863057 rs530561691 0 + - - -/C genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,C, 4892.000000,116.000000, 0.976837,0.023163, 599 chr1 1863404 1863405 rs60147457 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 2432.000000,2576.000000, 0.485623,0.514377, 599 chr1 1863650 1863651 rs567786428 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, 599 chr1 1863651 1863652 rs529094041 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 599 chr1 1863662 1863663 rs188860648 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 599 chr1 1863759 1863760 rs181531458 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 599 chr1 1863835 1863836 rs374579472 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,SSIP, 2 -,A, 592.000000,4416.000000, 0.118211,0.881789, 599 chr1 1864124 1864125 rs111905292 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, 599 chr1 1864525 1864526 rs3121830 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2019.000000,2989.000000, 0.403155,0.596845, 599 chr1 1864833 1864834 rs150465929 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4950.000000,58.000000, 0.988419,0.011582, 599 chr1 1865078 1865079 rs59878453 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3940.000000,1068.000000, 0.786741,0.213259, maf-5-some-pop,maf-5-all-pops 599 chr1 1865263 1865264 rs28493148 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSAHASNP,TISHKOFF, 2 C,G, 76.000000,4932.000000, 0.015176,0.984824, 599 chr1 1865292 1865293 rs76611781 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop 599 chr1 1865751 1865752 rs2748968 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SC_JCM,SSAHASNP,SSMP, 2 C,T, 1842.000000,3166.000000, 0.367812,0.632188, maf-5-some-pop,maf-5-all-pops 599 chr1 1865821 1865822 rs2474451 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 C,T, 1977.000000,3031.000000, 0.394768,0.605232, maf-5-some-pop,maf-5-all-pops 599 chr1 1865822 1865824 rs563954495 0 + GT GT -/GT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GT, 61.000000,4947.000000, 0.012180,0.987819, 599 chr1 1865977 1865978 rs539847515 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 599 chr1 1866172 1866173 rs34454803 0 - C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 599 chr1 1866248 1866249 rs76654570 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 599 chr1 1866334 1866335 rs61775027 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,GMI, 2 C,T, 4082.000000,926.000000, 0.815096,0.184904, 599 chr1 1866345 1866346 rs569764505 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4930.000000,78.000000, 0.984425,0.015575, 599 chr1 1866375 1866376 rs200090476 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,G, 2586.000000,2422.000000, 0.516374,0.483626, 599 chr1 1866536 1866537 rs548009190 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 92.000000,4916.000000, 0.018371,0.981629, 599 chr1 1866543 1866544 rs564581870 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 599 chr1 1866604 1866605 rs34793596 0 - C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 599 chr1 1866612 1866613 rs35531706 0 - C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 599 chr1 1866638 1866639 rs116013429 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, 599 chr1 1866691 1866692 rs144739748 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4047.000000,961.000000, 0.808107,0.191893, 599 chr1 1866704 1866705 rs113843434 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCM-HGSC-SUB, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 599 chr1 1866707 1866708 rs572113622 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 997.000000,4011.000000, 0.199081,0.800919, 599 chr1 1866720 1866721 rs541217857 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 993.000000,4015.000000, 0.198283,0.801717, 599 chr1 1866733 1866734 rs564721104 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 425.000000,4583.000000, 0.084864,0.915136, 599 chr1 1866738 1866739 rs111674991 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 2928.000000,2080.000000, 0.584665,0.415335, 599 chr1 1866844 1866845 rs528610367 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1046.000000,3962.000000, 0.208866,0.791134, 599 chr1 1866934 1866936 rs145315324 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,AT, 85.000000,4923.000000, 0.016973,0.983027, 599 chr1 1866974 1866975 rs555344282 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4440.000000,568.000000, 0.886581,0.113419, 599 chr1 1867306 1867306 rs71266537 0 + - - -/AC genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,HUMANGENOME_JCVI,LUNTER, 2 -,AC, 4495.000000,513.000000, 0.897564,0.102436, 599 chr1 1867376 1867377 rs2748969 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3039.000000,1969.000000, 0.606829,0.393171, maf-5-some-pop,maf-5-all-pops 599 chr1 1867425 1867426 rs2803320 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1930.000000,3078.000000, 0.385383,0.614617, 599 chr1 1867515 1867516 rs2803321 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2030.000000,2978.000000, 0.405351,0.594649, 599 chr1 1867656 1867656 rs112657762 0 + - - -/A genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,BL,BUSHMAN, 2 -,A, 3991.000000,1017.000000, 0.796925,0.203075, 599 chr1 1868065 1868066 rs2803322 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2016.000000,2992.000000, 0.402556,0.597444, maf-5-some-pop,maf-5-all-pops 599 chr1 1868484 1868485 rs28658236 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 371.000000,4637.000000, 0.074082,0.925919, maf-5-some-pop,maf-5-all-pops 599 chr1 1868711 1868712 rs2748970 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3014.000000,1994.000000, 0.601837,0.398163, maf-5-some-pop,maf-5-all-pops 599 chr1 1869240 1869241 rs2474453 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 3276.000000,1732.000000, 0.654153,0.345847, maf-5-some-pop 599 chr1 1869333 1869334 rs2748971 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3130.000000,1878.000000, 0.625000,0.375000, maf-5-some-pop,maf-5-all-pops 599 chr1 1869493 1869495 rs113907178 0 + CT CT -/CT genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,PJP,SSMP, 2 -,CT, 2977.000000,2031.000000, 0.594449,0.405551, 599 chr1 1869660 1869662 rs144445165 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BILGI_BIOE,GMI,SSMP,TISHKOFF, 2 -,CA, 969.000000,4039.000000, 0.193490,0.806510, 599 chr1 1869697 1869698 rs529815672 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, 599 chr1 1869723 1869724 rs548302018 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, 599 chr1 1869771 1869771 rs149970574 0 + - - -/CT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BL,EVA-GONL,LUNTER, 2 -,CT, 2548.000000,2460.000000, 0.508786,0.491214, 599 chr1 1869905 1869906 rs28592294 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4053.000000,955.000000, 0.809305,0.190695, maf-5-some-pop,maf-5-all-pops 599 chr1 1870209 1870210 rs2803323 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4180.000000,828.000000, 0.834665,0.165335, maf-5-some-pop 599 chr1 1870268 1870269 rs71630949 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 599 chr1 1870534 1870535 rs111437079 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 599 chr1 1870600 1870602 rs201264754 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,AT, 61.000000,4947.000000, 0.012180,0.987819, 599 chr1 1870663 1870664 rs72911078 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop,maf-5-all-pops 599 chr1 1870760 1870761 rs77307711 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 1066.000000,3942.000000, 0.212859,0.787141, maf-5-some-pop,maf-5-all-pops 599 chr1 1871336 1871337 rs16824543 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1091.000000,3917.000000, 0.217851,0.782149, maf-5-some-pop 599 chr1 1871416 1871417 rs2803324 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4190.000000,818.000000, 0.836661,0.163339, maf-5-some-pop 599 chr1 1872411 1872412 rs2803325 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2054.000000,2954.000000, 0.410144,0.589856, 599 chr1 1872474 1872475 rs188194417 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 58.000000,4950.000000, 0.011582,0.988419, 599 chr1 1872577 1872578 rs11485872 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,HGSV,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 G,T, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop,maf-5-all-pops 599 chr1 1873513 1873514 rs2803326 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2041.000000,2967.000000, 0.407548,0.592452, maf-5-some-pop,maf-5-all-pops 599 chr1 1873524 1873525 rs2803327 0 + T T C/T genomic single unknown 0 0 missense exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2967.000000,2041.000000, 0.592452,0.407548, maf-5-some-pop,maf-5-all-pops 599 chr1 1873624 1873625 rs12758705 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 906.000000,4102.000000, 0.180911,0.819089, maf-5-some-pop,maf-5-all-pops 599 chr1 1873698 1873699 rs2748979 0 - G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1874113 1874114 rs58467471 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,SSMP,TISHKOFF, 2 C,G, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 599 chr1 1874716 1874716 rs140921481 0 + - - -/G genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,G, 4793.000000,215.000000, 0.957069,0.042931, 599 chr1 1874836 1874837 rs2803330 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2125.000000,2883.000000, 0.424321,0.575679, maf-5-some-pop,maf-5-all-pops 599 chr1 1874841 1874842 rs143503247 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 4887.000000,121.000000, 0.975839,0.024161, 599 chr1 1874925 1874926 rs72634877 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB, 2 C,G, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop,maf-5-all-pops 599 chr1 1874958 1874959 rs59139552 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 599 chr1 1875099 1875100 rs142635844 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 60.000000,4948.000000, 0.011981,0.988019, 599 chr1 1875144 1875145 rs2803331 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 816.000000,4192.000000, 0.162939,0.837061, maf-5-some-pop 599 chr1 1875431 1875432 rs79391687 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1090.000000,3918.000000, 0.217652,0.782348, maf-5-some-pop,maf-5-all-pops 599 chr1 1875512 1875513 rs2803332 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1931.000000,3077.000000, 0.385583,0.614417, maf-5-some-pop,maf-5-all-pops 599 chr1 1875529 1875530 rs2803333 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1932.000000,3076.000000, 0.385783,0.614217, maf-5-some-pop,maf-5-all-pops 599 chr1 1875620 1875621 rs2803334 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 1937.000000,3071.000000, 0.386781,0.613219, 599 chr1 1875654 1875655 rs2803335 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 3166.000000,1842.000000, 0.632188,0.367812, 599 chr1 1875858 1875859 rs2803337 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 2 A,G, 3016.000000,1992.000000, 0.602236,0.397764, maf-5-some-pop,maf-5-all-pops 599 chr1 1876014 1876015 rs115823318 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 599 chr1 1876113 1876114 rs2803338 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3087.000000,1921.000000, 0.616414,0.383586, 599 chr1 1876823 1876824 rs141473925 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 599 chr1 1877138 1877139 rs144219806 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 599 chr1 1877902 1877903 rs76364715 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,NHLBI-ESP, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 599 chr1 1878070 1878071 rs2803340 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3088.000000,1920.000000, 0.616613,0.383387, maf-5-some-pop,maf-5-all-pops 599 chr1 1878150 1878151 rs145004608 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 599 chr1 1878330 1878331 rs115477779 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 599 chr1 1878333 1878334 rs76232499 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 599 chr1 1878627 1878628 rs2803341 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3073.000000,1935.000000, 0.613618,0.386382, maf-5-some-pop,maf-5-all-pops 599 chr1 1878661 1878662 rs79493796 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 599 chr1 1878763 1878764 rs76133100 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB, 2 G,T, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 599 chr1 1878925 1878926 rs77769952 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 599 chr1 1879086 1879087 rs28573337 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 862.000000,4146.000000, 0.172125,0.827875, maf-5-some-pop,maf-5-all-pops 599 chr1 1879241 1879242 rs28709246 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 4935.000000,73.000000, 0.985423,0.014577, 599 chr1 1879475 1879476 rs28635329 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,T, 639.000000,4369.000000, 0.127596,0.872404, 599 chr1 1879522 1879523 rs113559636 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4814.000000,194.000000, 0.961262,0.038738, 599 chr1 1879559 1879560 rs28498068 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1601.000000,3407.000000, 0.319688,0.680312, 599 chr1 1879562 1879563 rs28671104 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 943.000000,4065.000000, 0.188299,0.811701, 599 chr1 1879738 1879739 rs28617739 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,T, 445.000000,4563.000000, 0.088858,0.911142, maf-5-some-pop,maf-5-all-pops 599 chr1 1879851 1879851 rs56005703 0 + - - -/ATAT genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,LUNTER, 2 -,ATAT, 781.000000,4227.000000, 0.155950,0.844050, 599 chr1 1880033 1880033 rs113596328 0 + - - -/TT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,BUSHMAN,SSMP, 2 -,TT, 1034.000000,3974.000000, 0.206470,0.793530, 599 chr1 1880171 1880172 rs116688931 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, 599 chr1 1880184 1880185 rs72894722 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop,maf-5-all-pops 599 chr1 1880283 1880284 rs78110450 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 599 chr1 1880313 1880317 rs201108284 0 + TTCC TTCC -/TTCC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,TTCC, 58.000000,4950.000000, 0.011582,0.988419, 599 chr1 1880373 1880373 rs140432652 0 + - - -/C genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,WARNICH_LAB, 2 -,C, 1040.000000,3968.000000, 0.207668,0.792332, 599 chr1 1880380 1880381 rs74824345 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,SSMP, 2 C,T, 1694.000000,3314.000000, 0.338259,0.661741, 599 chr1 1880381 1880382 rs376187677 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,WARNICH_LAB, 2 -,C, 1137.000000,3871.000000, 0.227037,0.772963, 599 chr1 1880548 1880552 rs551997926 0 + CTTT CTTT -/CTTT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CTTT, 65.000000,4943.000000, 0.012979,0.987021, 599 chr1 1880564 1880564 rs147210610 0 + - - -/TCCC genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,TCCC, 4533.000000,475.000000, 0.905152,0.094848, 599 chr1 1880686 1880687 rs144980471 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, 599 chr1 1880743 1880744 rs79297580 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop 599 chr1 1880928 1880929 rs146273737 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,T, 965.000000,4043.000000, 0.192692,0.807308, 599 chr1 1881018 1881019 rs4648737 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 945.000000,4063.000000, 0.188698,0.811302, maf-5-some-pop 599 chr1 1881069 1881070 rs4648596 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 945.000000,4063.000000, 0.188698,0.811302, maf-5-some-pop 599 chr1 1881084 1881085 rs72894725 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4063.000000,945.000000, 0.811302,0.188698, maf-5-some-pop,maf-5-all-pops 599 chr1 1881221 1881222 rs76788638 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,TISHKOFF, 2 C,T, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop 599 chr1 1881360 1881361 rs4648597 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SSMP,WI_SSAHASNP, 2 C,T, 4498.000000,510.000000, 0.898163,0.101837, maf-5-some-pop 599 chr1 1881577 1881578 rs28840971 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 599 chr1 1881731 1881732 rs145840463 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 599 chr1 1881737 1881738 rs28853693 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 599 chr1 1881893 1881894 rs138317318 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 599 chr1 1881995 1881996 rs28571194 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,G, 4508.000000,500.000000, 0.900160,0.099840, 599 chr1 1882068 1882069 rs72894732 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 411.000000,4597.000000, 0.082069,0.917931, 599 chr1 1882351 1882352 rs114393949 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 599 chr1 1882380 1882381 rs77070454 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 599 chr1 1882436 1882437 rs80269157 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,ENSEMBL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 599 chr1 1882479 1882480 rs78814286 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4498.000000,510.000000, 0.898163,0.101837, maf-5-some-pop 599 chr1 1882744 1882745 rs79051250 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4498.000000,510.000000, 0.898163,0.101837, maf-5-some-pop,maf-5-all-pops 599 chr1 1882789 1882790 rs28703641 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 599 chr1 1882936 1882937 rs28754760 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4066.000000,942.000000, 0.811901,0.188099, maf-5-some-pop,maf-5-all-pops 599 chr1 1883080 1883081 rs28505085 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4066.000000,942.000000, 0.811901,0.188099, maf-5-some-pop,maf-5-all-pops 599 chr1 1883091 1883092 rs61123457 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,G, 4499.000000,509.000000, 0.898363,0.101637, maf-5-some-pop 599 chr1 1883304 1883304 rs572674409 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,T, 3263.000000,1745.000000, 0.651558,0.348442, 599 chr1 1883384 1883385 rs112890330 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 599 chr1 1883449 1883450 rs72894741 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4568.000000,440.000000, 0.912141,0.087859, maf-5-some-pop,maf-5-all-pops 599 chr1 1883502 1883503 rs2748977 0 - G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 12 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 4 A,C,G,T, 1829.000000,3179.000000,3179.000000,1829.000000, 0.182608,0.317392,0.317392,0.182608, maf-5-some-pop,maf-5-all-pops 599 chr1 1883534 1883535 rs111717999 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4609.000000,399.000000, 0.920327,0.079673, 599 chr1 1883671 1883672 rs113959770 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 437.000000,4571.000000, 0.087260,0.912740, 599 chr1 1883784 1883785 rs28368268 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 C,T, 509.000000,4499.000000, 0.101637,0.898363, maf-5-some-pop,maf-5-all-pops 599 chr1 1883791 1883793 rs111449449 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BUSHMAN,SSIP, 2 -,AA, 435.000000,4573.000000, 0.086861,0.913139, 599 chr1 1884102 1884102 rs576484834 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,SSIP, 2 -,T, 4542.000000,466.000000, 0.906949,0.093051, 599 chr1 1884410 1884411 rs145752025 0 + A A A/T genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4949.000000,59.000000, 0.988219,0.011781, 599 chr1 1884735 1884737 rs138554232 0 + TT TT -/TT genomic deletion unknown 0 0 intron,near-gene-3 range 1 4 1000GENOMES,BILGI_BIOE,BL,GMI, 2 -,TT, 967.000000,4041.000000, 0.193091,0.806909, 599 chr1 1884879 1884880 rs57642219 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 943.000000,4065.000000, 0.188299,0.811701, 599 chr1 1885638 1885639 rs138880221 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WARNICH_LAB, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 599 chr1 1885768 1885769 rs28624830 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 941.000000,4067.000000, 0.187899,0.812101, maf-5-some-pop 599 chr1 1885780 1885781 rs77947738 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 6 1000GENOMES,BGI,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 599 chr1 1886114 1886115 rs72894746 0 + C C C/G genomic single unknown 0 0 intron,untranslated-3 exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4070.000000,938.000000, 0.812700,0.187300, maf-5-some-pop 599 chr1 1886204 1886204 rs112927199 0 + - - -/GAGT genomic insertion unknown 0 0 intron,untranslated-3 between 1 5 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,LUNTER, 2 -,GAGT, 3154.000000,1854.000000, 0.629792,0.370208, 599 chr1 1886243 1886244 rs111920116 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, 599 chr1 1886250 1886251 rs113165546 0 + T T C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 7 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, 599 chr1 1886346 1886346 rs76908344 0 + - - -/CC genomic insertion unknown 0 0 intron,untranslated-3 between 1 5 1000GENOMES,BCMHGSC_JDW,BILGI_BIOE,GMI,LUNTER, 2 -,CC, 3001.000000,2007.000000, 0.599241,0.400759, 599 chr1 1886351 1886352 rs113682810 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,NHLBI-ESP,TISHKOFF, 2 C,T, 4631.000000,377.000000, 0.924720,0.075280, 599 chr1 1886756 1886756 rs142420544 0 + - - -/CTGGTGCGCGT genomic insertion unknown 0 0 intron,untranslated-3 between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CTGGTGCGCGT, 4882.000000,126.000000, 0.974840,0.025160, 599 chr1 1887018 1887019 rs28548017 0 + A A A/G genomic single unknown 0 0 intron,stop-loss exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1013.000000,3995.000000, 0.202276,0.797724, maf-5-some-pop,maf-5-all-pops 599 chr1 1887244 1887245 rs28575980 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,CLINSEQ_SNP,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 908.000000,4100.000000, 0.181310,0.818690, maf-5-some-pop 599 chr1 1887299 1887300 rs115884258 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop 599 chr1 1887786 1887787 rs114625464 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop,maf-5-all-pops 599 chr1 1888329 1888330 rs28535696 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3943.000000,1065.000000, 0.787340,0.212660, maf-5-some-pop,maf-5-all-pops 599 chr1 1888452 1888453 rs28549710 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1055.000000,3953.000000, 0.210663,0.789337, maf-5-some-pop,maf-5-all-pops 599 chr1 1888681 1888682 rs28499066 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop 599 chr1 1889015 1889016 rs111796965 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 78.000000,4930.000000, 0.015575,0.984425, 599 chr1 1889074 1889075 rs941533 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop,maf-5-all-pops 599 chr1 1889198 1889199 rs59192373 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 C,T, 1089.000000,3919.000000, 0.217452,0.782548, maf-5-some-pop,maf-5-all-pops 599 chr1 1889211 1889213 rs139867260 0 + GC GC -/GC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,LUNTER,SSMP,WARNICH_LAB, 2 -,GC, 984.000000,4024.000000, 0.196486,0.803514, 599 chr1 1889791 1889792 rs2748973 0 - A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1890159 1890160 rs114834811 0 + G G A/G genomic single by-frequency,by-1000genomes 0.011867 0.076109 intron exact 1 1 1000GENOMES, 2 A,G, 2.000000,116.000000, 0.016949,0.983051, 599 chr1 1890288 1890289 rs139068583 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 599 chr1 1890941 1890942 rs151302461 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 599 chr1 1891033 1891034 rs78927713 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4292.000000,716.000000, 0.857029,0.142971, maf-5-some-pop 599 chr1 1891155 1891156 rs28446828 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4156.000000,852.000000, 0.829872,0.170128, maf-5-some-pop 599 chr1 1891262 1891263 rs2474454 0 - A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 599 chr1 1891485 1891486 rs113160895 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4594.000000,414.000000, 0.917332,0.082668, maf-5-some-pop 599 chr1 1892042 1892043 rs114759447 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 599 chr1 1892047 1892048 rs2803292 0 - G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1892206 1892207 rs78688820 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 599 chr1 1892606 1892607 rs113378578 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 599 chr1 1892651 1892652 rs75762553 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 599 chr1 1892654 1892655 rs59353179 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 393.000000,4615.000000, 0.078474,0.921526, maf-5-some-pop,maf-5-all-pops 599 chr1 1892987 1892988 rs115402077 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 599 chr1 1893070 1893071 rs77586065 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,SSMP, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 599 chr1 1893398 1893399 rs57794387 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4596.000000,412.000000, 0.917732,0.082268, 599 chr1 1893503 1893504 rs79466635 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop,maf-5-all-pops 599 chr1 1893713 1893714 rs148554370 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 112.000000,4896.000000, 0.022364,0.977636, 599 chr1 1893915 1893916 rs556157241 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 410.000000,4598.000000, 0.081869,0.918131, 599 chr1 1894283 1894284 rs4648739 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1072.000000,3936.000000, 0.214058,0.785942, maf-5-some-pop,maf-5-all-pops 599 chr1 1894603 1894604 rs76195270 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop 599 chr1 1894676 1894677 rs140867594 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 599 chr1 1894744 1894745 rs28592733 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4589.000000,419.000000, 0.916334,0.083666, 599 chr1 1894750 1894751 rs28548673 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 419.000000,4589.000000, 0.083666,0.916334, 599 chr1 1895057 1895058 rs72894763 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 603.000000,4405.000000, 0.120407,0.879593, maf-5-some-pop,maf-5-all-pops 599 chr1 1895176 1895177 rs7523728 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4174.000000,834.000000, 0.833466,0.166534, maf-5-some-pop,maf-5-all-pops 599 chr1 1895539 1895540 rs28561741 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop,maf-5-all-pops 599 chr1 1895556 1895557 rs72894764 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4455.000000,553.000000, 0.889577,0.110423, maf-5-some-pop,maf-5-all-pops 599 chr1 1895990 1895991 rs113680873 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 192.000000,4816.000000, 0.038339,0.961661, 599 chr1 1896143 1896144 rs113480837 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 193.000000,4815.000000, 0.038538,0.961462, 599 chr1 1896332 1896333 rs61734005 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 11 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 A,G, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop 599 chr1 1896552 1896553 rs28625839 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4176.000000,832.000000, 0.833866,0.166134, maf-5-some-pop,maf-5-all-pops 599 chr1 1897290 1897291 rs112194786 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop,maf-5-all-pops 599 chr1 1897468 1897469 rs28523363 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop,maf-5-all-pops 599 chr1 1897590 1897591 rs4648599 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4064.000000,944.000000, 0.811502,0.188498, maf-5-some-pop,maf-5-all-pops 599 chr1 1897737 1897738 rs113473059 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 599 chr1 1897752 1897753 rs4648600 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4067.000000,941.000000, 0.812101,0.187899, maf-5-some-pop,maf-5-all-pops 599 chr1 1897888 1897889 rs61734007 0 + G G C/G genomic single unknown 0 0 missense exact 1 10 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,G, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop 599 chr1 1897959 1897960 rs61734009 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,CORNELL,EVA-GONL,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 599 chr1 1898044 1898045 rs28712827 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 936.000000,4072.000000, 0.186901,0.813099, maf-5-some-pop,maf-5-all-pops 599 chr1 1898250 1898251 rs79334998 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,SSMP, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 599 chr1 1898348 1898349 rs28414188 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4173.000000,835.000000, 0.833267,0.166733, maf-5-some-pop,maf-5-all-pops 599 chr1 1898368 1898369 rs28629936 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 950.000000,4058.000000, 0.189696,0.810304, maf-5-some-pop,maf-5-all-pops 599 chr1 1898763 1898764 rs115123751 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 599 chr1 1898796 1898797 rs74504636 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, 599 chr1 1899163 1899164 rs17778128 0 - G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1899278 1899279 rs61775058 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop,maf-5-all-pops 599 chr1 1899318 1899319 rs61775059 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 950.000000,4058.000000, 0.189696,0.810304, maf-5-some-pop,maf-5-all-pops 599 chr1 1899400 1899400 rs111514435 0 + - - -/TGAA genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,BUSHMAN,LUNTER, 2 -,TGAA, 2759.000000,2249.000000, 0.550919,0.449081, 599 chr1 1899420 1899421 rs56689575 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 599 chr1 1899451 1899455 rs150534229 0 + TGAA TGAA -/TGAA genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,GMI,LUNTER,PJP,SSMP, 2 -,TGAA, 984.000000,4024.000000, 0.196486,0.803514, 599 chr1 1899489 1899493 rs144326691 0 + AGTG AGTG -/AGTG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AGTG, 79.000000,4929.000000, 0.015775,0.984225, 599 chr1 1899542 1899542 rs145702083 0 + - - -/TGAG genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,EVA-GONL,LUNTER,WARNICH_LAB, 2 -,TGAG, 4086.000000,922.000000, 0.815895,0.184105, 599 chr1 1899569 1899573 rs144153122 0 + TGAA TGAA -/TGAA genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,GMI,LUNTER,PJP,TISHKOFF, 2 -,TGAA, 954.000000,4054.000000, 0.190495,0.809505, 599 chr1 1899765 1899766 rs112427596 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop,maf-5-all-pops 599 chr1 1899860 1899861 rs4648601 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4054.000000,954.000000, 0.809505,0.190495, maf-5-some-pop,maf-5-all-pops 599 chr1 1899928 1899929 rs146490438 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 599 chr1 1900017 1900018 rs113873178 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 C,G, 4866.000000,142.000000, 0.971645,0.028355, 599 chr1 1900024 1900025 rs56985589 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 1013.000000,3995.000000, 0.202276,0.797724, 599 chr1 1900106 1900106 rs145742571 0 + - - -/CTC genomic insertion unknown 0 0 cds-indel between 1 3 1000GENOMES,GMI,LUNTER, 2 -,CTC, 4011.000000,997.000000, 0.800919,0.199081, 599 chr1 1900307 1900308 rs114206046 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,SSMP, 2 C,T, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,maf-5-all-pops 599 chr1 1900331 1900332 rs55709963 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4134.000000,874.000000, 0.825479,0.174521, maf-5-some-pop,maf-5-all-pops 599 chr1 1900338 1900339 rs56126097 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4104.000000,904.000000, 0.819489,0.180511, maf-5-some-pop,maf-5-all-pops 599 chr1 1900374 1900375 rs55676322 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA, 2 A,G, 901.000000,4107.000000, 0.179912,0.820088, 599 chr1 1900375 1900376 rs148154906 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4107.000000,901.000000, 0.820088,0.179912, 599 chr1 1900400 1900401 rs76342153 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 599 chr1 1900407 1900408 rs61776961 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCMHGSC_JDW,EVA-GONL, 2 A,G, 4170.000000,838.000000, 0.832668,0.167332, 599 chr1 1900409 1900410 rs61776962 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCMHGSC_JDW,EVA-GONL, 2 C,T, 4123.000000,885.000000, 0.823283,0.176717, 599 chr1 1900413 1900414 rs61776963 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCMHGSC_JDW,EVA-GONL, 2 C,T, 900.000000,4108.000000, 0.179712,0.820288, 599 chr1 1900431 1900432 rs61776964 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCMHGSC_JDW,EVA-GONL, 2 G,T, 958.000000,4050.000000, 0.191294,0.808706, maf-5-some-pop,maf-5-all-pops 599 chr1 1900444 1900445 rs61776965 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,EVA-GONL,TISHKOFF, 2 C,T, 4047.000000,961.000000, 0.808107,0.191893, maf-5-some-pop,maf-5-all-pops 599 chr1 1900453 1900454 rs6681749 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 A,G, 1765.000000,3243.000000, 0.352436,0.647564, maf-5-some-pop 599 chr1 1900568 1900569 rs182729854 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 599 chr1 1900903 1900918 rs556006911 0 + GCCCAGCCCTGCCCG GCCCAGCCCTGCCCG -/GCCCAGCCCTGCCCG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GCCCAGCCCTGCCCG, 85.000000,4923.000000, 0.016973,0.983027, 599 chr1 1900917 1900918 rs28707401 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 847.000000,4161.000000, 0.169129,0.830871, maf-5-some-pop 599 chr1 1900936 1900937 rs77481863 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 A,C, 114.000000,4894.000000, 0.022764,0.977236, 599 chr1 1901423 1901424 rs78340018 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,EVA-GONL,SSMP, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, 599 chr1 1901452 1901453 rs79252606 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 599 chr1 1901472 1901473 rs77828034 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,G, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop,maf-5-all-pops 599 chr1 1901568 1901570 rs145768145 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,AG, 84.000000,4924.000000, 0.016773,0.983227, 599 chr1 1901752 1901753 rs140992306 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 599 chr1 1901944 1901945 rs13303126 0 - T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1902310 1902311 rs77152626 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4831.000000,177.000000, 0.964656,0.035344, 599 chr1 1902339 1902340 rs77915279 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,SSMP, 2 G,T, 4880.000000,128.000000, 0.974441,0.025559, 599 chr1 1902355 1902356 rs76235226 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop 599 chr1 1902365 1902366 rs567722763 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, 599 chr1 1902368 1902370 rs542907367 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CA, 91.000000,4917.000000, 0.018171,0.981829, 599 chr1 1902439 1902440 rs535169883 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 599 chr1 1902465 1902466 rs137927575 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WARNICH_LAB, 2 A,C, 4092.000000,916.000000, 0.817093,0.182907, 599 chr1 1902548 1902550 rs201343396 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,SSMP,WARNICH_LAB, 2 -,CA, 540.000000,4468.000000, 0.107827,0.892173, 599 chr1 1902561 1902562 rs7367171 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 4014.000000,994.000000, 0.801518,0.198482, maf-5-some-pop,maf-5-all-pops 599 chr1 1902564 1902565 rs563928461 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, 599 chr1 1902565 1902566 rs7367879 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,TISHKOFF,WI_SSAHASNP, 2 A,G, 966.000000,4042.000000, 0.192891,0.807109, maf-5-some-pop,maf-5-all-pops 599 chr1 1902608 1902609 rs6675187 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 617.000000,4391.000000, 0.123203,0.876797, 599 chr1 1902658 1902659 rs28626697 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4068.000000,940.000000, 0.812300,0.187700, 599 chr1 1902666 1902667 rs6675279 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4744.000000,264.000000, 0.947284,0.052716, 599 chr1 1902672 1902684 rs541113459 0 + CACACACATGCA CACACACATGCA -/CACACACATGCA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CACACACATGCA, 106.000000,4902.000000, 0.021166,0.978834, 599 chr1 1902680 1902681 rs111203467 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 81.000000,4927.000000, 0.016174,0.983826, 599 chr1 1902716 1902718 rs112242281 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BUSHMAN,PJP,SSMP, 2 -,CA, 648.000000,4360.000000, 0.129393,0.870607, 599 chr1 1902717 1902718 rs557619881 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, 599 chr1 1902769 1902770 rs6675382 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 666.000000,4342.000000, 0.132987,0.867013, 599 chr1 1902830 1902830 rs202027219 0 + - - -/CA genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,CA, 4895.000000,113.000000, 0.977436,0.022564, 599 chr1 1902872 1902873 rs7366028 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4117.000000,891.000000, 0.822085,0.177915, maf-5-some-pop,maf-5-all-pops 599 chr1 1902905 1902906 rs74223885 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,BUSHMAN,JMKIDD_LAB,SSMP, 2 G,T, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 599 chr1 1902934 1902935 rs76807117 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 599 chr1 1903213 1903214 rs75613628 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 599 chr1 1903302 1903303 rs4648603 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2535.000000,2473.000000, 0.506190,0.493810, maf-5-some-pop,maf-5-all-pops 599 chr1 1903356 1903357 rs13303329 0 - G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1903365 1903366 rs117657686 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 599 chr1 1903372 1903373 rs117921686 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,NHLBI-ESP,SSMP, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 599 chr1 1903399 1903400 rs200794297 0 + T T G/T genomic single by-frequency 0.02078 0.09979 intron exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 G,T, 2.037000,191.962997, 0.010500,0.989500, 599 chr1 1903407 1903408 rs116259649 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 599 chr1 1903658 1903659 rs41307850 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SI_EXO, 2 A,T, 4955.000000,53.000000, 0.989417,0.010583, 599 chr1 1903659 1903660 rs112793403 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP, 2 C,G, 4893.000000,115.000000, 0.977037,0.022963, 599 chr1 1904155 1904156 rs141899364 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, 599 chr1 1904208 1904209 rs60548845 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 599 chr1 1904790 1904791 rs117580501 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 599 chr1 1904829 1904830 rs114557479 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, 599 chr1 1905130 1905131 rs28401378 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 528.000000,4480.000000, 0.105431,0.894569, maf-5-some-pop,maf-5-all-pops 599 chr1 1905305 1905306 rs56313717 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,ILLUMINA, 2 A,C, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop 599 chr1 1905371 1905372 rs114281645 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 599 chr1 1905394 1905395 rs145571224 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 4896.000000,112.000000, 0.977636,0.022364, 599 chr1 1905405 1905406 rs111242673 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,SSMP, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, 599 chr1 1905564 1905565 rs77196972 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, 599 chr1 1906077 1906078 rs113558817 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP, 2 G,T, 4888.000000,120.000000, 0.976038,0.023962, 599 chr1 1906139 1906140 rs139295361 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 64.000000,4944.000000, 0.012780,0.987220, 599 chr1 1906587 1906588 rs72894789 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 G,T, 76.000000,4932.000000, 0.015176,0.984824, 599 chr1 1907223 1907224 rs59531074 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4358.000000,650.000000, 0.870208,0.129792, 599 chr1 1907262 1907263 rs58697689 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 599 chr1 1907382 1907383 rs59549535 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 599 chr1 1907596 1907597 rs74687935 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 599 chr1 1907738 1907739 rs115193218 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 599 chr1 1907904 1907905 rs76267977 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 599 chr1 1907911 1907912 rs7528894 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3632.000000,1376.000000, 0.725240,0.274760, maf-5-some-pop,maf-5-all-pops 599 chr1 1908011 1908012 rs28588807 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1375.000000,3633.000000, 0.274561,0.725439, maf-5-some-pop,maf-5-all-pops 599 chr1 1908038 1908039 rs4388640 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3630.000000,1378.000000, 0.724840,0.275160, maf-5-some-pop,maf-5-all-pops 599 chr1 1908082 1908083 rs7551350 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 950.000000,4058.000000, 0.189696,0.810304, 599 chr1 1908084 1908085 rs28410799 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,EVA-GONL,GMI,HGSV,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3633.000000,1375.000000, 0.725439,0.274561, 599 chr1 1908099 1908100 rs28789409 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3633.000000,1375.000000, 0.725439,0.274561, 599 chr1 1908137 1908138 rs140403866 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, 599 chr1 1908147 1908148 rs144157233 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 610.000000,4398.000000, 0.121805,0.878195, 599 chr1 1908216 1908217 rs147775385 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 599 chr1 1908241 1908242 rs188449750 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 599 chr1 1908272 1908273 rs76578527 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 926.000000,4082.000000, 0.184904,0.815096, 599 chr1 1908294 1908294 rs147484570 0 + - - -/T/TT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,BL,LUNTER, 3 -,T,TT, 3546.000000,692.000000,770.000000, 0.708067,0.138179,0.153754, 599 chr1 1908309 1908309 rs200761729 0 + - - -/AG genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,LUNTER,TISHKOFF, 2 -,AG, 3633.000000,1375.000000, 0.725439,0.274561, 599 chr1 1908428 1908429 rs28545809 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1440.000000,3568.000000, 0.287540,0.712460, 599 chr1 1908702 1908703 rs4233027 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3633.000000,1375.000000, 0.725439,0.274561, maf-5-some-pop 599 chr1 1909140 1909141 rs72894797 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,C, 74.000000,4934.000000, 0.014776,0.985224, 599 chr1 1909317 1909318 rs61776976 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1387.000000,3621.000000, 0.276957,0.723043, 599 chr1 1909444 1909445 rs55863117 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3616.000000,1392.000000, 0.722045,0.277955, maf-5-some-pop,maf-5-all-pops 599 chr1 1909493 1909494 rs28716654 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3618.000000,1390.000000, 0.722444,0.277556, maf-5-some-pop,maf-5-all-pops 599 chr1 1909552 1909553 rs28680595 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1380.000000,3628.000000, 0.275559,0.724441, 599 chr1 1909679 1909680 rs6681305 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 599 chr1 1909700 1909701 rs28613404 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3650.000000,1358.000000, 0.728834,0.271166, maf-5-some-pop,maf-5-all-pops 599 chr1 1909732 1909733 rs28491083 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3651.000000,1357.000000, 0.729034,0.270966, maf-5-some-pop,maf-5-all-pops 599 chr1 1909842 1909843 rs28433557 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3647.000000,1361.000000, 0.728235,0.271765, maf-5-some-pop,maf-5-all-pops 599 chr1 1909853 1909854 rs28448395 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1361.000000,3647.000000, 0.271765,0.728235, maf-5-some-pop,maf-5-all-pops 599 chr1 1909867 1909868 rs28539219 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 887.000000,4121.000000, 0.177117,0.822883, maf-5-some-pop,maf-5-all-pops 599 chr1 1909968 1909969 rs76931781 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,C, 73.000000,4935.000000, 0.014577,0.985423, 599 chr1 1910000 1910001 rs28468541 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3627.000000,1381.000000, 0.724241,0.275759, maf-5-some-pop,maf-5-all-pops 599 chr1 1910011 1910012 rs28588737 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1380.000000,3628.000000, 0.275559,0.724441, maf-5-some-pop,maf-5-all-pops 599 chr1 1910085 1910086 rs28645949 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3637.000000,1371.000000, 0.726238,0.273762, maf-5-some-pop,maf-5-all-pops 599 chr1 1910235 1910236 rs28651716 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1377.000000,3631.000000, 0.274960,0.725040, maf-5-some-pop,maf-5-all-pops 599 chr1 1910269 1910270 rs117121495 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 599 chr1 1910370 1910371 rs28642304 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 1337.000000,3671.000000, 0.266973,0.733027, maf-5-some-pop,maf-5-all-pops 599 chr1 1910605 1910606 rs7550407 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, 599 chr1 1910697 1910698 rs374588328 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, 599 chr1 1910702 1910703 rs28413536 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 G,T, 72.000000,4936.000000, 0.014377,0.985623, 599 chr1 1910745 1910746 rs138066336 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,SSMP, 2 A,G, 714.000000,4294.000000, 0.142572,0.857428, 599 chr1 1910795 1910796 rs143303262 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,SSMP, 2 C,T, 1179.000000,3829.000000, 0.235423,0.764577, 599 chr1 1910940 1910941 rs28629944 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 585.000000,4423.000000, 0.116813,0.883187, 599 chr1 1911000 1911001 rs147744679 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,SSMP, 2 C,T, 1254.000000,3754.000000, 0.250399,0.749601, 599 chr1 1911006 1911007 rs72468220 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,SSMP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 599 chr1 1911059 1911060 rs112532797 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,G, 3664.000000,1344.000000, 0.731629,0.268371, 599 chr1 1911119 1911120 rs74046266 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, 599 chr1 1911146 1911147 rs111227361 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,COMPLETE_GENOMICS,SSMP, 2 A,G, 3763.000000,1245.000000, 0.751398,0.248602, 599 chr1 1911216 1911217 rs7540978 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 2.000000,14.000000, 0.125000,0.875000, 599 chr1 1911238 1911239 rs7553329 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 3577.000000,1431.000000, 0.714257,0.285743, 599 chr1 1911242 1911243 rs71511318 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSMP, 2 C,T, 3577.000000,1431.000000, 0.714257,0.285743, 599 chr1 1911245 1911246 rs7553331 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 3577.000000,1431.000000, 0.714257,0.285743, 599 chr1 1911318 1911319 rs7553352 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 1732.000000,3276.000000, 0.345847,0.654153, maf-5-some-pop 599 chr1 1911325 1911326 rs76274023 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,ENSEMBL, 2 A,G, 794.000000,4214.000000, 0.158546,0.841454, 599 chr1 1911366 1911367 rs373753124 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 599 chr1 1911377 1911378 rs7541164 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4416.000000,592.000000, 0.881789,0.118211, maf-5-some-pop,maf-5-all-pops 599 chr1 1911498 1911499 rs114352675 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 599 chr1 1911557 1911558 rs28645431 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,SSAHASNP,SSMP, 2 C,T, 196.000000,78.000000, 0.715328,0.284672, maf-5-some-pop,maf-5-all-pops 599 chr1 1911937 1911938 rs4648740 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 3554.000000,1454.000000, 0.709665,0.290335, maf-5-some-pop,maf-5-all-pops 599 chr1 1911967 1911968 rs4648741 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,T, 1379.000000,3629.000000, 0.275359,0.724641, maf-5-some-pop,maf-5-all-pops 599 chr1 1912180 1912181 rs77942583 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, 599 chr1 1912484 1912485 rs117450978 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop,maf-5-all-pops 599 chr1 1912496 1912497 rs114761731 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 599 chr1 1912582 1912583 rs4648742 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,SSMP,WI_SSAHASNP, 2 G,T, 772.000000,4236.000000, 0.154153,0.845847, maf-5-some-pop,maf-5-all-pops 599 chr1 1912593 1912594 rs115965341 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 599 chr1 1912757 1912758 rs13302917 0 - G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1912842 1912843 rs141533907 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, 599 chr1 1912997 1912998 rs539635962 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 599 chr1 1913001 1913002 rs6656545 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI, 2 A,G, 3804.000000,1204.000000, 0.759585,0.240415, 599 chr1 1913010 1913011 rs113838672 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 66.000000,4942.000000, 0.013179,0.986821, 599 chr1 1913191 1913192 rs148151855 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,SSMP, 2 A,G, 1375.000000,3633.000000, 0.274561,0.725439, 599 chr1 1913395 1913396 rs56273126 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,HGSV,SSMP, 2 A,C, 3607.000000,1401.000000, 0.720248,0.279752, 599 chr1 1913422 1913423 rs116304368 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,MPI_MOLGEN,SSMP, 2 A,G, 16.000000,104.000000, 0.133333,0.866667, maf-5-some-pop,maf-5-all-pops 599 chr1 1913562 1913563 rs58434854 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,HGSV,SSMP, 2 A,G, 3883.000000,1125.000000, 0.775359,0.224641, 599 chr1 1914264 1914265 rs4648745 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1375.000000,3633.000000, 0.274561,0.725439, maf-5-some-pop,maf-5-all-pops 599 chr1 1914388 1914389 rs76255054 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,ILLUMINA, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 599 chr1 1914486 1914487 rs4648746 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2769.000000,2239.000000, 0.552915,0.447085, maf-5-some-pop,maf-5-all-pops 599 chr1 1914604 1914605 rs28737396 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3638.000000,1370.000000, 0.726438,0.273562, maf-5-some-pop,maf-5-all-pops 599 chr1 1914608 1914609 rs80135494 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 A,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 599 chr1 1914945 1914946 rs61776990 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4111.000000,897.000000, 0.820887,0.179113, maf-5-some-pop,maf-5-all-pops 599 chr1 1915330 1915330 rs72502759 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BGI,SSMP, 2 -,T, 4896.000000,112.000000, 0.977636,0.022364, 599 chr1 1915361 1915362 rs182559558 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 104.000000,4904.000000, 0.020767,0.979233, 599 chr1 1915395 1915397 rs147448452 0 + GG GG -/GG genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,GG, 1369.000000,3639.000000, 0.273363,0.726637, 599 chr1 1915428 1915428 rs71578355 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BILGI_BIOE,HUMANGENOME_JCVI, 2 -,T, 3690.000000,1318.000000, 0.736821,0.263179, 599 chr1 1915439 1915440 rs75319063 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 C,T, 112.000000,4896.000000, 0.022364,0.977636, 599 chr1 1915442 1915443 rs28696732 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 A,T, 4791.000000,217.000000, 0.956669,0.043331, 599 chr1 1915739 1915740 rs71578356 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,HUMANGENOME_JCVI, 2 -,T, 1129.000000,3879.000000, 0.225439,0.774561, 599 chr1 1916000 1916001 rs74046272 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 599 chr1 1916024 1916025 rs4648747 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1403.000000,3605.000000, 0.280152,0.719848, maf-5-some-pop,maf-5-all-pops 599 chr1 1916958 1916959 rs74594142 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,ILLUMINA,NHLBI-ESP,SSMP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 599 chr1 1917142 1917143 rs72896704 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 599 chr1 1917445 1917446 rs77451850 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 599 chr1 1917614 1917615 rs13302992 0 - A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 599 chr1 1917667 1917667 rs531588701 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 4902.000000,106.000000, 0.978834,0.021166, 599 chr1 1917738 1917739 rs143052007 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 599 chr1 1917828 1917829 rs4648748 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1367.000000,3641.000000, 0.272963,0.727037, maf-5-some-pop,maf-5-all-pops 599 chr1 1917907 1917908 rs4648750 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3640.000000,1368.000000, 0.726837,0.273163, maf-5-some-pop,maf-5-all-pops 599 chr1 1918002 1918003 rs75821626 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, 599 chr1 1918190 1918191 rs4233028 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 1792.000000,3216.000000, 0.357827,0.642173, maf-5-some-pop 599 chr1 1918295 1918296 rs74887383 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4466.000000,542.000000, 0.891773,0.108227, maf-5-some-pop,maf-5-all-pops 599 chr1 1918343 1918344 rs72896708 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,NHLBI-ESP,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 599 chr1 1918487 1918488 rs4350140 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1850.000000,3158.000000, 0.369409,0.630591, maf-5-some-pop 599 chr1 1918534 1918535 rs4535948 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 A,T, 3639.000000,1369.000000, 0.726637,0.273363, maf-5-some-pop,maf-5-all-pops 599 chr1 1918583 1918584 rs4603072 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3388.000000,1620.000000, 0.676518,0.323482, maf-5-some-pop,maf-5-all-pops 599 chr1 1918594 1918595 rs4466593 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1366.000000,3642.000000, 0.272764,0.727236, maf-5-some-pop,maf-5-all-pops 599 chr1 1918764 1918765 rs74046276 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 599 chr1 1918803 1918804 rs74046277 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop,maf-5-all-pops 599 chr1 1918986 1918986 rs70940708 0 + - - -/T genomic insertion unknown 0 0 intron between 1 9 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,T, 2103.000000,2905.000000, 0.419928,0.580072, 599 chr1 1919140 1919141 rs72896710 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4154.000000,854.000000, 0.829473,0.170527, 599 chr1 1919317 1919318 rs76016298 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,C, 54.000000,4954.000000, 0.010783,0.989217, 599 chr1 1919324 1919325 rs112965000 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 545.000000,4463.000000, 0.108826,0.891174, maf-5-some-pop,maf-5-all-pops 599 chr1 1919702 1919703 rs4606253 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,ILLUMINA-UK,SC_JCM,TISHKOFF, 2 A,C, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 599 chr1 1920268 1920269 rs566278280 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 3520.000000,1488.000000, 0.702875,0.297125, 599 chr1 1920751 1920752 rs74806630 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop 599 chr1 1920916 1920917 rs77839487 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,maf-5-all-pops 599 chr1 1920930 1920932 rs147588727 0 + TC TC -/TC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,SSMP, 2 -,TC, 68.000000,4940.000000, 0.013578,0.986422, 599 chr1 1920994 1920995 rs116692827 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop,maf-5-all-pops 599 chr1 1921317 1921318 rs72896713 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 599 chr1 1921466 1921466 rs58922004 0 + - - -/T genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 4155.000000,853.000000, 0.829673,0.170327, 599 chr1 1921625 1921626 rs77986465 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 599 chr1 1921773 1921774 rs113165761 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 103.000000,4905.000000, 0.020567,0.979433, 599 chr1 1921807 1921808 rs113005638 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 599 chr1 1922457 1922458 rs76892099 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 599 chr1 1922554 1922555 rs28542278 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4337.000000,671.000000, 0.866014,0.133986, maf-5-some-pop,maf-5-all-pops 599 chr1 1922833 1922834 rs6605075 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, 599 chr1 1922906 1922907 rs6666955 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 975.000000,4033.000000, 0.194688,0.805312, 599 chr1 1922965 1922966 rs143688958 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 599 chr1 1923027 1923028 rs117714447 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 599 chr1 1923216 1923217 rs7529662 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3825.000000,1183.000000, 0.763778,0.236222, 599 chr1 1923244 1923245 rs146074182 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4931.000000,77.000000, 0.984625,0.015375, 599 chr1 1923260 1923261 rs6605076 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4787.000000,221.000000, 0.955871,0.044129, 599 chr1 1923273 1923274 rs6662056 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 C,T, 2156.000000,2852.000000, 0.430511,0.569489, 599 chr1 1923279 1923280 rs6605077 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4069.000000,939.000000, 0.812500,0.187500, 599 chr1 1923288 1923289 rs529138263 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 599 chr1 1923293 1923294 rs565980140 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 599 chr1 1923294 1923295 rs74761695 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,EVA-GONL,TISHKOFF, 2 A,G, 4628.000000,380.000000, 0.924121,0.075879, 599 chr1 1923305 1923306 rs6605078 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 550.000000,4458.000000, 0.109824,0.890176, 599 chr1 1923339 1923340 rs113741871 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4592.000000,416.000000, 0.916933,0.083067, 599 chr1 1923350 1923351 rs147570691 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 599 chr1 1923351 1923352 rs6684080 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 391.000000,4617.000000, 0.078075,0.921925, 599 chr1 1923394 1923395 rs186389814 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 599 chr1 1923435 1923436 rs6684100 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 720.000000,4288.000000, 0.143770,0.856230, 599 chr1 1923478 1923478 rs537739387 0 + - - -/AAAA/AAAAAA genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 3 -,AAAA,AAAAAA, 4770.000000,19.000000,219.000000, 0.952476,0.003794,0.043730, 599 chr1 1923506 1923507 rs6662278 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4174.000000,834.000000, 0.833466,0.166534, maf-5-some-pop,maf-5-all-pops 599 chr1 1923557 1923558 rs115714041 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop,maf-5-all-pops 599 chr1 1923559 1923560 rs116166669 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 599 chr1 1923680 1923681 rs6675865 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 1365.000000,3643.000000, 0.272564,0.727436, maf-5-some-pop 599 chr1 1924061 1924062 rs138308614 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4620.000000,388.000000, 0.922524,0.077476, 599 chr1 1924202 1924203 rs142889079 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4393.000000,615.000000, 0.877196,0.122804, 599 chr1 1924204 1924205 rs184465450 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 599 chr1 1924625 1924626 rs183480163 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, 599 chr1 1924784 1924785 rs58504758 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 2796.000000,2212.000000, 0.558307,0.441693, 599 chr1 1924790 1924791 rs181047387 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 599 chr1 1924808 1924809 rs57460771 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 2177.000000,2831.000000, 0.434704,0.565296, 599 chr1 1924886 1924887 rs145105197 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4943.000000,65.000000, 0.987021,0.012979, 599 chr1 1924971 1924972 rs115097420 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 599 chr1 1925069 1925070 rs140256970 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 599 chr1 1925175 1925176 rs77427382 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ENSEMBL, 2 A,C, 2588.000000,2420.000000, 0.516773,0.483227, 599 chr1 1925176 1925177 rs78486921 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ENSEMBL, 2 C,T, 2588.000000,2420.000000, 0.516773,0.483227, 599 chr1 1925177 1925178 rs74995408 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ENSEMBL, 2 A,T, 2588.000000,2420.000000, 0.516773,0.483227, 599 chr1 1925292 1925293 rs181952917 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4799.000000,209.000000, 0.958267,0.041733, 599 chr1 1925336 1925337 rs111643081 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4161.000000,847.000000, 0.830871,0.169129, 599 chr1 1925337 1925338 rs112343488 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,G, 284.000000,4724.000000, 0.056709,0.943291, 599 chr1 1925407 1925408 rs28407647 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,COMPLETE_GENOMICS,GMI,SSAHASNP,SSMP, 2 A,G, 4459.000000,549.000000, 0.890375,0.109625, 599 chr1 1925613 1925613 rs76749811 0 + - - -/A genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BILGI_BIOE,HUMANGENOME_JCVI, 2 -,A, 3698.000000,1310.000000, 0.738419,0.261581, 599 chr1 1925720 1925721 rs6691182 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1769.000000,3239.000000, 0.353235,0.646765, maf-5-some-pop,maf-5-all-pops 599 chr1 1925995 1925996 rs72899758 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop,maf-5-all-pops 599 chr1 1926086 1926087 rs6661597 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3230.000000,1778.000000, 0.644968,0.355032, maf-5-some-pop 599 chr1 1926101 1926102 rs6675751 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 3250.000000,1758.000000, 0.648962,0.351038, maf-5-some-pop 599 chr1 1926114 1926115 rs35927058 0 - A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,ENSEMBL,HUMANGENOME_JCVI,PJP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 599 chr1 1926277 1926278 rs6667687 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 3435.000000,1573.000000, 0.685903,0.314097, maf-5-some-pop,maf-5-all-pops 599 chr1 1926517 1926518 rs60363762 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop,maf-5-all-pops 599 chr1 1926645 1926646 rs114357969 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, 599 chr1 1926800 1926801 rs150054289 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 599 chr1 1927219 1927220 rs143646187 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, 599 chr1 1927294 1927295 rs77365440 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4589.000000,419.000000, 0.916334,0.083666, 599 chr1 1927461 1927462 rs111275536 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 599 chr1 1928149 1928150 rs138436574 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, 599 chr1 1928598 1928599 rs28770275 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 3347.000000,1661.000000, 0.668331,0.331669, 599 chr1 1928728 1928729 rs60910107 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4581.000000,427.000000, 0.914736,0.085264, 599 chr1 1929406 1929407 rs6672175 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop,maf-5-all-pops 599 chr1 1929487 1929488 rs146857578 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 599 chr1 1929665 1929666 rs7532409 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3262.000000,1746.000000, 0.651358,0.348642, 599 chr1 1929833 1929834 rs7532529 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,C, 3279.000000,1729.000000, 0.654752,0.345248, maf-5-some-pop,maf-5-all-pops 599 chr1 1929858 1929859 rs7527169 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 1730.000000,3278.000000, 0.345447,0.654553, maf-5-some-pop,maf-5-all-pops 599 chr1 1929876 1929877 rs7520124 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,C, 1729.000000,3279.000000, 0.345248,0.654752, maf-5-some-pop,maf-5-all-pops 599 chr1 1930002 1930003 rs80136560 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop,maf-5-all-pops 599 chr1 1930039 1930040 rs146461858 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, 599 chr1 1930093 1930094 rs7542825 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 3281.000000,1727.000000, 0.655152,0.344848, 599 chr1 1930157 1930157 rs559914958 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,A, 3288.000000,1720.000000, 0.656550,0.343450, 599 chr1 1930377 1930378 rs77327785 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 599 chr1 1930390 1930391 rs6605079 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3261.000000,1747.000000, 0.651158,0.348842, maf-5-some-pop,maf-5-all-pops 599 chr1 1930511 1930512 rs6605080 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3379.000000,1629.000000, 0.674720,0.325280, maf-5-some-pop,maf-5-all-pops 599 chr1 1930552 1930553 rs55780084 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 899.000000,4109.000000, 0.179513,0.820487, maf-5-some-pop,maf-5-all-pops 599 chr1 1930753 1930754 rs6605081 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3333.000000,1675.000000, 0.665535,0.334465, maf-5-some-pop,maf-5-all-pops 599 chr1 1930804 1930805 rs6605082 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1688.000000,3320.000000, 0.337061,0.662939, maf-5-some-pop,maf-5-all-pops 599 chr1 1930971 1930972 rs114700920 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 599 chr1 1931298 1931299 rs56316921 0 + A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4071.000000,937.000000, 0.812899,0.187101, maf-5-some-pop,maf-5-all-pops 599 chr1 1931400 1931401 rs4358986 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,GMI,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4532.000000,476.000000, 0.904952,0.095048, 599 chr1 1931495 1931496 rs6685055 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2358.000000,2650.000000, 0.470847,0.529153, maf-5-some-pop,maf-5-all-pops 599 chr1 1931528 1931529 rs6679335 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2615.000000,2393.000000, 0.522165,0.477835, maf-5-some-pop,maf-5-all-pops 599 chr1 1931837 1931838 rs114470748 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, 599 chr1 1932180 1932181 rs28575389 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 886.000000,4122.000000, 0.176917,0.823083, maf-5-some-pop,maf-5-all-pops 599 chr1 1932466 1932467 rs28588769 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1617.000000,3391.000000, 0.322883,0.677117, maf-5-some-pop,maf-5-all-pops 599 chr1 1933081 1933082 rs114867805 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 599 chr1 1933266 1933267 rs28706276 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop 599 chr1 1933793 1933794 rs140795249 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 61.000000,4947.000000, 0.012180,0.987819, 599 chr1 1933866 1933867 rs4434797 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4206.000000,802.000000, 0.839856,0.160144, maf-5-some-pop,maf-5-all-pops 599 chr1 1934370 1934376 rs569616808 0 + ATATAA ATATAA -/ATATAA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,ATATAA, 54.000000,4954.000000, 0.010783,0.989217, 599 chr1 1934646 1934647 rs6682175 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,G, 1733.000000,3275.000000, 0.346046,0.653954, maf-5-some-pop 599 chr1 1934858 1934858 rs148007552 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,A, 4923.000000,85.000000, 0.983027,0.016973, 599 chr1 1935074 1935075 rs56233006 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 933.000000,4075.000000, 0.186302,0.813698, maf-5-some-pop,maf-5-all-pops 599 chr1 1935365 1935366 rs56330868 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 C,G, 1090.000000,3918.000000, 0.217652,0.782348, 599 chr1 1935367 1935367 rs138452702 0 + - - -/GGGCCG/TGGCCG genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,LUNTER, 3 -,GGGCCG,TGGCCG, 2007.000000,2994.000000,7.000000, 0.400759,0.597843,0.001398, 599 chr1 1935487 1935488 rs56300813 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1079.000000,3929.000000, 0.215455,0.784545, maf-5-some-pop,maf-5-all-pops 599 chr1 1935508 1935509 rs56351829 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1036.000000,3972.000000, 0.206869,0.793131, maf-5-some-pop,maf-5-all-pops 599 chr1 1935579 1935580 rs72636339 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4329.000000,679.000000, 0.864417,0.135583, maf-5-some-pop,maf-5-all-pops 599 chr1 1935801 1935802 rs112626083 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4769.000000,239.000000, 0.952276,0.047724, 599 chr1 1936169 1936170 rs144185953 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,BL,EVA-GONL, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 599 chr1 1936347 1936348 rs147470893 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,C, 99.000000,4909.000000, 0.019768,0.980232, 599 chr1 1936369 1936370 rs140027021 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, 599 chr1 1936542 1936543 rs114018433 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop,maf-5-all-pops 599 chr1 1936755 1936756 rs148475387 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 99.000000,4909.000000, 0.019768,0.980232, 599 chr1 1937206 1937207 rs112892345 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1041.000000,3967.000000, 0.207867,0.792133, 599 chr1 1937342 1937342 rs539694306 0 + - - -/CTCT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,CTCT, 3173.000000,1835.000000, 0.633586,0.366414, 599 chr1 1937382 1937383 rs557201072 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 145.000000,4863.000000, 0.028954,0.971046, 599 chr1 1937386 1937387 rs78668760 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,C, 3992.000000,1016.000000, 0.797125,0.202875, maf-5-some-pop,maf-5-all-pops 599 chr1 1937388 1937389 rs528946100 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4767.000000,241.000000, 0.951877,0.048123, 599 chr1 1937493 1937494 rs78971654 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop,maf-5-all-pops 599 chr1 1937913 1937914 rs6691322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1040.000000,3968.000000, 0.207668,0.792332, maf-5-some-pop,maf-5-all-pops 599 chr1 1938035 1938035 rs368519869 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 -,A, 2994.000000,2014.000000, 0.597843,0.402157, 599 chr1 1938472 1938473 rs6663186 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 933.000000,4075.000000, 0.186302,0.813698, 599 chr1 1938694 1938695 rs112460713 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop,maf-5-all-pops 599 chr1 1939276 1939277 rs139673298 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 599 chr1 1939333 1939334 rs149352443 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, 599 chr1 1939825 1939826 rs28550169 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3844.000000,1164.000000, 0.767572,0.232428, maf-5-some-pop,maf-5-all-pops 599 chr1 1940070 1940071 rs28634676 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3883.000000,1125.000000, 0.775359,0.224641, 599 chr1 1940073 1940074 rs150960449 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 599 chr1 1940386 1940387 rs28421659 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1125.000000,3883.000000, 0.224641,0.775359, maf-5-some-pop,maf-5-all-pops 599 chr1 1940852 1940853 rs79227468 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop 599 chr1 1940870 1940871 rs77740232 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 599 chr1 1941272 1941273 rs4648751 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop,maf-5-all-pops 599 chr1 1941629 1941630 rs28584852 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1063.000000,3945.000000, 0.212260,0.787740, 599 chr1 1941657 1941658 rs6605072 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2039.000000,2969.000000, 0.407149,0.592851, 599 chr1 1941710 1941711 rs146313633 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 599 chr1 1941742 1941743 rs58381080 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,PJP,TISHKOFF, 2 C,G, 76.000000,4932.000000, 0.015176,0.984824, 599 chr1 1941833 1941834 rs13303060 0 - T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,SSAHASNP,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 599 chr1 1941928 1941929 rs6656398 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2775.000000,2233.000000, 0.554113,0.445887, maf-5-some-pop,maf-5-all-pops 599 chr1 1942446 1942447 rs74223887 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 599 chr1 1942710 1942710 rs111618224 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BILGI_BIOE,BUSHMAN, 2 -,T, 1162.000000,3846.000000, 0.232029,0.767971, 599 chr1 1943290 1943291 rs6672254 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2273.000000,2735.000000, 0.453874,0.546126, maf-5-some-pop,maf-5-all-pops 599 chr1 1943718 1943718 rs151248761 0 + - - -/AAAATAAAAT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BILGI_BIOE,LUNTER, 2 -,AAAATAAAAT, 1382.000000,3626.000000, 0.275958,0.724042, 599 chr1 1944100 1944101 rs6605073 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1099.000000,3909.000000, 0.219449,0.780551, maf-5-some-pop,maf-5-all-pops 599 chr1 1944122 1944123 rs147778758 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,MPI_MOLGEN, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 599 chr1 1944287 1944288 rs145622663 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, 599 chr1 1944406 1944407 rs191013246 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,TISHKOFF, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 599 chr1 1944647 1944648 rs183003982 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4925.000000,83.000000, 0.983427,0.016573, 599 chr1 1944851 1944852 rs79806101 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 599 chr1 1945751 1945752 rs140627453 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, 599 chr1 1945800 1945801 rs114991512 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 599 chr1 1945959 1945960 rs75981889 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 599 chr1 1946077 1946078 rs78322400 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 599 chr1 1946306 1946307 rs16824616 0 - T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 599 chr1 1946808 1946809 rs4648752 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1089.000000,3919.000000, 0.217452,0.782548, maf-5-some-pop 599 chr1 1948290 1948294 rs139900932 0 + AAAG AAAG -/AAAG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,AAAG, 134.000000,4874.000000, 0.026757,0.973243, 599 chr1 1948500 1948501 rs113637675 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 599 chr1 1948640 1948641 rs72636349 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3980.000000,1028.000000, 0.794728,0.205272, maf-5-some-pop 599 chr1 1948804 1948805 rs4481796 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3924.000000,1084.000000, 0.783546,0.216454, maf-5-some-pop,maf-5-all-pops 599 chr1 1949141 1949142 rs149228195 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,C, 4945.000000,63.000000, 0.987420,0.012580, 599 chr1 1949526 1949527 rs372807546 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,JMKIDD_LAB,SSIP,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 599 chr1 1949543 1949544 rs3121818 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1150.000000,3858.000000, 0.229633,0.770367, 599 chr1 1949634 1949635 rs369854680 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,JMKIDD_LAB,SSIP,TISHKOFF, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 599 chr1 1949845 1949846 rs149543586 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4944.000000,64.000000, 0.987220,0.012780, 599 chr1 1950543 1950544 rs139605883 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4860.000000,148.000000, 0.970447,0.029553, 599 chr1 1950550 1950551 rs72911372 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 1004.000000,4004.000000, 0.200479,0.799521, maf-5-some-pop,maf-5-all-pops 599 chr1 1950555 1950556 rs145012951 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 599 chr1 1950620 1950621 rs28603108 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP, 2 A,G, 3849.000000,1159.000000, 0.768570,0.231430, maf-5-some-pop,maf-5-all-pops 599 chr1 1950718 1950720 rs530542863 0 + CT CT -/CT genomic deletion unknown 0 0 near-gene-5 range 1 1 1000GENOMES, 2 -,CT, 278.000000,4730.000000, 0.055511,0.944489, 599 chr1 1951826 1951827 rs3121819 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop 599 chr1 1952604 1952605 rs28502222 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3938.000000,1070.000000, 0.786342,0.213658, maf-5-some-pop,maf-5-all-pops 599 chr1 1952609 1952610 rs28407473 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4114.000000,894.000000, 0.821486,0.178514, maf-5-some-pop,maf-5-all-pops 599 chr1 1952781 1952782 rs3128318 0 + C C A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4034.000000,974.000000, 0.805511,0.194489, maf-5-some-pop,maf-5-all-pops 599 chr1 1953017 1953018 rs3128320 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP, 2 A,G, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop 599 chr1 1953251 1953252 rs3128321 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4034.000000,974.000000, 0.805511,0.194489, maf-5-some-pop,maf-5-all-pops 599 chr1 1953575 1953576 rs28595482 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1382.000000,3626.000000, 0.275958,0.724042, maf-5-some-pop,maf-5-all-pops 599 chr1 1953604 1953605 rs6688606 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4666.000000,342.000000, 0.931709,0.068291, maf-5-some-pop,maf-5-all-pops 599 chr1 1953811 1953812 rs4648614 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2271.000000,2737.000000, 0.453474,0.546526, maf-5-some-pop,maf-5-all-pops 599 chr1 1953841 1953842 rs141315001 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,MPI_MOLGEN, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, 599 chr1 1953953 1953954 rs114841389 0 + T T G/T genomic single by-frequency,by-1000genomes 0.001834 0.030229 intron exact 1 1 1000GENOMES, 2 G,T, 2.000000,116.000000, 0.016949,0.983051, 599 chr1 1954370 1954371 rs374844139 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSIP,TISHKOFF, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, 599 chr1 1954435 1954436 rs3128322 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3775.000000,1233.000000, 0.753794,0.246206, maf-5-some-pop,maf-5-all-pops 599 chr1 1955079 1955080 rs3128323 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4041.000000,967.000000, 0.806909,0.193091, maf-5-some-pop,maf-5-all-pops 599 chr1 1955372 1955373 rs4648791 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3685.000000,1323.000000, 0.735823,0.264177, maf-5-some-pop,maf-5-all-pops 599 chr1 1957036 1957037 rs2229110 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 26 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TSC-CSHL,WICVAR,YUSUKE, 2 C,T, 2811.000000,2197.000000, 0.561302,0.438698, maf-5-some-pop,maf-5-all-pops 599 chr1 1957952 1957953 rs57099857 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 599 chr1 1958229 1958230 rs143680539 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, 599 chr1 1958476 1958477 rs374890489 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSIP,TISHKOFF, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 599 chr1 1958488 1958489 rs147016415 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 599 chr1 1959185 1959186 rs6688232 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop,maf-5-all-pops 599 chr1 1959260 1959261 rs28574670 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 718.000000,4290.000000, 0.143371,0.856629, maf-5-some-pop 599 chr1 1959312 1959313 rs75557444 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4684.000000,324.000000, 0.935304,0.064696, maf-5-some-pop,maf-5-all-pops 599 chr1 1959977 1959978 rs28409373 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2562.000000,2446.000000, 0.511581,0.488419, maf-5-some-pop,maf-5-all-pops 599 chr1 1960155 1960155 rs150818595 0 + - - -/T genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB, 2 -,T, 4915.000000,93.000000, 0.981430,0.018570, 599 chr1 1960357 1960358 rs78491888 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 599 chr1 1960387 1960388 rs74802917 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, 599 chr1 1960462 1960463 rs74346221 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,maf-5-all-pops 599 chr1 1960673 1960674 rs28408173 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CORNELL,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4015.000000,993.000000, 0.801717,0.198283, maf-5-some-pop,maf-5-all-pops 599 chr1 1960925 1960926 rs28581504 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4123.000000,885.000000, 0.823283,0.176717, maf-5-some-pop,maf-5-all-pops 599 chr1 1960963 1960964 rs116197762 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop,maf-5-all-pops 599 chr1 1961407 1961408 rs28431879 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,CLINSEQ_SNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop,maf-5-all-pops 599 chr1 1961465 1961466 rs28398772 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,BGI,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop 599 chr1 1961964 1961965 rs114770000 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 G,T, 93.000000,4915.000000, 0.018570,0.981430, 599 chr1 1962818 1962819 rs16824628 0 - T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1963069 1963070 rs142351547 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 955.000000,4053.000000, 0.190695,0.809305, 599 chr1 1963073 1963074 rs538615260 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 773.000000,4235.000000, 0.154353,0.845647, 599 chr1 1963081 1963082 rs115150958 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4006.000000,1002.000000, 0.799920,0.200080, 599 chr1 1963084 1963085 rs377117594 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4926.000000,82.000000, 0.983626,0.016374, 599 chr1 1963107 1963108 rs75228171 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop,maf-5-all-pops 599 chr1 1963108 1963109 rs76776094 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 939.000000,4069.000000, 0.187500,0.812500, maf-5-some-pop,maf-5-all-pops 599 chr1 1963123 1963124 rs184312140 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 56.000000,4952.000000, 0.011182,0.988818, 599 chr1 1963142 1963143 rs530503929 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 599 chr1 1963148 1963149 rs567387849 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 599 chr1 1963290 1963291 rs34849122 0 - C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 599 chr1 1963433 1963434 rs145369368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, 599 chr1 1963906 1963907 rs79635555 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 599 chr1 1964623 1964624 rs7551020 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 238.000000,4770.000000, 0.047524,0.952476, maf-5-some-pop,maf-5-all-pops 599 chr1 1964774 1964775 rs72636359 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1029.000000,3979.000000, 0.205471,0.794529, maf-5-some-pop,maf-5-all-pops 599 chr1 1964811 1964812 rs72636360 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 1030.000000,3978.000000, 0.205671,0.794329, maf-5-some-pop,maf-5-all-pops 599 chr1 1965275 1965276 rs75767570 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop,maf-5-all-pops 599 chr1 1965426 1965427 rs55833012 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 998.000000,4010.000000, 0.199281,0.800719, maf-5-some-pop,maf-5-all-pops 600 chr1 1966243 1966244 rs4648792 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,WI_SSAHASNP, 2 G,T, 4883.000000,125.000000, 0.975040,0.024960, 600 chr1 1966244 1966245 rs148089579 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 600 chr1 1966452 1966453 rs3128310 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4730.000000,278.000000, 0.944489,0.055511, 600 chr1 1966522 1966523 rs113049736 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, 600 chr1 1966615 1966616 rs3128311 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 879.000000,4129.000000, 0.175519,0.824481, maf-5-some-pop,maf-5-all-pops 600 chr1 1966827 1966828 rs72911392 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF, 2 A,G, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop,maf-5-all-pops 600 chr1 1966948 1966949 rs116384726 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 600 chr1 1967403 1967404 rs115492961 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop 600 chr1 1968830 1968831 rs9442614 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop 600 chr1 1969600 1969601 rs55977422 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 600 chr1 1969662 1969663 rs57577487 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 600 chr1 1969751 1969752 rs74372554 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 600 chr1 1970128 1970129 rs75228711 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 113.000000,4895.000000, 0.022564,0.977436, 600 chr1 1970594 1970595 rs114426302 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops 600 chr1 1970601 1970602 rs78041054 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, 600 chr1 1970727 1970728 rs78969856 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,T, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 600 chr1 1971352 1971353 rs76593651 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 600 chr1 1971388 1971389 rs3121820 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2226.000000,2782.000000, 0.444489,0.555511, maf-5-some-pop,maf-5-all-pops 600 chr1 1971434 1971435 rs114428631 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop,maf-5-all-pops 600 chr1 1971761 1971762 rs3128313 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop,maf-5-all-pops 600 chr1 1971870 1971871 rs3121821 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF, 2 A,T, 423.000000,4585.000000, 0.084465,0.915535, 600 chr1 1972346 1972347 rs75258103 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop,maf-5-all-pops 600 chr1 1972461 1972462 rs3121822 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop 600 chr1 1972887 1972888 rs6669226 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop,maf-5-all-pops 600 chr1 1972917 1972918 rs61677383 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,C, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 600 chr1 1973102 1973103 rs78405299 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,C, 58.000000,4950.000000, 0.011582,0.988419, 600 chr1 1973503 1973504 rs3128314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop,maf-5-all-pops 600 chr1 1973619 1973620 rs74046293 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,maf-5-all-pops 600 chr1 1973762 1973763 rs76598362 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 600 chr1 1974158 1974159 rs61565674 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, 600 chr1 1974253 1974254 rs188382475 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 600 chr1 1974844 1974845 rs60281103 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,G, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop,maf-5-all-pops 600 chr1 1974894 1974895 rs3121823 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,SC_JCM,TISHKOFF, 2 C,T, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop,maf-5-all-pops 600 chr1 1974966 1974967 rs3121824 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 761.000000,4247.000000, 0.151957,0.848043, maf-5-some-pop 600 chr1 1975433 1975434 rs570234429 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 305.000000,4703.000000, 0.060903,0.939097, 600 chr1 1975559 1975560 rs200755094 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 79.000000,4929.000000, 0.015775,0.984225, 600 chr1 1975697 1975701 rs575203510 0 + ACAC ACAC -/ACAC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,ACAC, 128.000000,4880.000000, 0.025559,0.974441, 600 chr1 1975699 1975701 rs545830894 0 + AC AC -/AC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AC, 4128.000000,880.000000, 0.824281,0.175719, 600 chr1 1975843 1975844 rs115171797 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop,maf-5-all-pops 600 chr1 1976380 1976381 rs142659861 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, 600 chr1 1976542 1976542 rs139668596 0 + - - -/CCGC genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BL,EVA-GONL,LUNTER, 2 -,CCGC, 807.000000,4201.000000, 0.161142,0.838858, 600 chr1 1976557 1976558 rs4648794 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 579.000000,4429.000000, 0.115615,0.884385, maf-5-some-pop,maf-5-all-pops 600 chr1 1976850 1976851 rs28394674 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 704.000000,4304.000000, 0.140575,0.859425, maf-5-some-pop,maf-5-all-pops 600 chr1 1976971 1976972 rs115420493 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, 600 chr1 1976979 1976980 rs562343556 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 256.000000,4752.000000, 0.051118,0.948882, 600 chr1 1977204 1977205 rs79754610 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,maf-5-all-pops 600 chr1 1977397 1977398 rs117843944 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, 600 chr1 1977648 1977649 rs75034719 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop,maf-5-all-pops 600 chr1 1978430 1978431 rs111990411 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 600 chr1 1978654 1978655 rs6661694 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 428.000000,4580.000000, 0.085463,0.914537, maf-5-some-pop 600 chr1 1978856 1978857 rs3121825 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2255.000000,2753.000000, 0.450280,0.549720, maf-5-some-pop,maf-5-all-pops 600 chr1 1979063 1979064 rs3128315 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4188.000000,820.000000, 0.836262,0.163738, maf-5-some-pop,maf-5-all-pops 600 chr1 1979190 1979190 rs569377748 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,C, 4926.000000,82.000000, 0.983626,0.016374, 600 chr1 1979252 1979253 rs76775611 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 680.000000,4328.000000, 0.135783,0.864217, maf-5-some-pop,maf-5-all-pops 600 chr1 1979325 1979326 rs3128316 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2156.000000,2852.000000, 0.430511,0.569489, maf-5-some-pop,maf-5-all-pops 600 chr1 1979344 1979345 rs1806315 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,TSC-CSHL, 2 C,T, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop 600 chr1 1979411 1979412 rs79727450 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4414.000000,594.000000, 0.881390,0.118610, maf-5-some-pop,maf-5-all-pops 600 chr1 1979565 1979566 rs113169197 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,G, 4920.000000,88.000000, 0.982428,0.017572, 600 chr1 1979723 1979724 rs3128317 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 935.000000,4073.000000, 0.186701,0.813299, maf-5-some-pop,maf-5-all-pops 600 chr1 1979841 1979842 rs61709121 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4555.000000,453.000000, 0.909545,0.090455, maf-5-some-pop 600 chr1 1980169 1980170 rs75148117 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 600 chr1 1980184 1980185 rs115074769 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 600 chr1 1980213 1980214 rs77844314 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 600 chr1 1980401 1980402 rs28449507 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4573.000000,435.000000, 0.913139,0.086861, 600 chr1 1980638 1980639 rs6683042 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,ABI,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 882.000000,4126.000000, 0.176118,0.823882, maf-5-some-pop,maf-5-all-pops 600 chr1 1980768 1980769 rs78101035 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 4942.000000,66.000000, 0.986821,0.013179, 600 chr1 1981125 1981126 rs113736389 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 600 chr1 1981835 1981836 rs56380654 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV, 2 C,T, 1416.000000,3592.000000, 0.282748,0.717252, maf-5-some-pop,maf-5-all-pops 600 chr1 1981885 1981886 rs192386882 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4744.000000,264.000000, 0.947284,0.052716, 600 chr1 1982012 1982013 rs57743955 0 + C C C/T genomic single unknown 0 0 untranslated-5 exact 1 5 1000GENOMES,EVA-GONL,HGSV,PJP,SSMP, 2 C,T, 4593.000000,415.000000, 0.917133,0.082867, 600 chr1 1982396 1982397 rs6692648 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 495.000000,4513.000000, 0.098842,0.901158, maf-5-some-pop 600 chr1 1982545 1982546 rs28709994 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 574.000000,4434.000000, 0.114617,0.885383, maf-5-some-pop,maf-5-all-pops 600 chr1 1982718 1982719 rs117092287 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 600 chr1 1982783 1982784 rs187804190 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 600 chr1 1982980 1982981 rs117390912 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 600 chr1 1983127 1983128 rs13303254 0 - A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 600 chr1 1983141 1983142 rs6693374 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3600.000000,1408.000000, 0.718850,0.281150, maf-5-some-pop 600 chr1 1983159 1983160 rs28703783 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1437.000000,3571.000000, 0.286941,0.713059, maf-5-some-pop,maf-5-all-pops 600 chr1 1983420 1983421 rs4648795 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3248.000000,1760.000000, 0.648562,0.351438, maf-5-some-pop,maf-5-all-pops 600 chr1 1983612 1983613 rs4648796 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,WI_SSAHASNP, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 600 chr1 1983700 1983701 rs28671574 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 529.000000,4479.000000, 0.105631,0.894369, maf-5-some-pop,maf-5-all-pops 600 chr1 1983791 1983792 rs113936340 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 600 chr1 1984226 1984227 rs3128319 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4229.000000,779.000000, 0.844449,0.155551, maf-5-some-pop,maf-5-all-pops 600 chr1 1984554 1984554 rs533903994 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 3382.000000,1626.000000, 0.675319,0.324681, 600 chr1 1984620 1984621 rs72913411 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,C, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 600 chr1 1984661 1984662 rs151082204 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 106.000000,4902.000000, 0.021166,0.978834, 600 chr1 1984687 1984688 rs116911074 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4583.000000,425.000000, 0.915136,0.084864, maf-5-some-pop,maf-5-all-pops 600 chr1 1984691 1984692 rs3121826 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1945.000000,3063.000000, 0.388379,0.611621, maf-5-some-pop,maf-5-all-pops 600 chr1 1984810 1984811 rs3121827 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1375.000000,3633.000000, 0.274561,0.725439, maf-5-some-pop,maf-5-all-pops 600 chr1 1984850 1984851 rs57714990 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 644.000000,4364.000000, 0.128594,0.871406, 600 chr1 1985416 1985417 rs78171541 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop,maf-5-all-pops 600 chr1 1985453 1985454 rs78313596 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 600 chr1 1985479 1985480 rs28602699 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 C,G, 4936.000000,72.000000, 0.985623,0.014377, 600 chr1 1985512 1985513 rs13303289 0 - C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 600 chr1 1985702 1985703 rs74910915 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 600 chr1 1985704 1985705 rs28668690 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop,maf-5-all-pops 600 chr1 1985808 1985809 rs72913414 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 53.000000,4955.000000, 0.010583,0.989417, 600 chr1 1985830 1985831 rs77448507 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 600 chr1 1986097 1986098 rs28377232 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4360.000000,648.000000, 0.870607,0.129393, maf-5-some-pop 600 chr1 1986189 1986190 rs60331980 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,SSMP,TISHKOFF, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop,maf-5-all-pops 600 chr1 1986208 1986209 rs57406510 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 600 chr1 1986380 1986381 rs552863793 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 1038.000000,3970.000000, 0.207268,0.792732, 600 chr1 1986398 1986399 rs2803308 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,SC_JCM, 2 A,T, 804.000000,4204.000000, 0.160543,0.839457, 600 chr1 1986454 1986455 rs2678950 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4392.000000,616.000000, 0.876997,0.123003, 600 chr1 1986529 1986530 rs563839088 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 600 chr1 1986535 1986536 rs147165091 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4071.000000,937.000000, 0.812899,0.187101, 600 chr1 1986570 1986571 rs2678951 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4222.000000,786.000000, 0.843051,0.156949, 600 chr1 1986753 1986754 rs3121828 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,SC_JCM,SC_SNP, 2 G,T, 4953.000000,55.000000, 0.989018,0.010982, 600 chr1 1986821 1986822 rs70937049 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SHGC,SSMP, 2 A,T, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 600 chr1 1987207 1987208 rs2271797 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop,maf-5-all-pops 600 chr1 1987389 1987390 rs78824488 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 600 chr1 1987761 1987762 rs3737631 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SHGC,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4496.000000,512.000000, 0.897764,0.102236, maf-5-some-pop 600 chr1 1987802 1987803 rs2803309 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SHGC,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 2788.000000,2220.000000, 0.556709,0.443291, maf-5-some-pop,maf-5-all-pops 600 chr1 1987992 1987993 rs12184 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 31 1000GENOMES,ABI,APPLERA_GI,BCM-HGSC-SUB,BGI,BUSHMAN,CANCER-GENOME,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,LEE,NHLBI-ESP,PJP,SC_JCM,SEATTLESEQ,SEQUENOM,SHGC,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIAF-CSNP,WI_SSAHASNP, 2 C,T, 3355.000000,1653.000000, 0.669928,0.330072, maf-5-some-pop 600 chr1 1988043 1988044 rs3820005 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SHGC,SSMP,YUSUKE, 2 C,G, 507.000000,4501.000000, 0.101238,0.898762, maf-5-some-pop,maf-5-all-pops 600 chr1 1988216 1988217 rs2803314 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BUSHMAN,EVA-GONL,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4321.000000,687.000000, 0.862819,0.137181, 600 chr1 1988259 1988260 rs2678952 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2379.000000,2629.000000, 0.475040,0.524960, 600 chr1 1988292 1988293 rs2678953 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,SC_JCM,SSMP,TISHKOFF, 2 C,G, 690.000000,4318.000000, 0.137780,0.862220, 600 chr1 1988312 1988313 rs2803315 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,SC_JCM,SSMP,TISHKOFF, 2 C,G, 692.000000,4316.000000, 0.138179,0.861821, 600 chr1 1988367 1988368 rs2803317 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4313.000000,695.000000, 0.861222,0.138778, 600 chr1 1988368 1988369 rs150364419 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 600 chr1 1988623 1988624 rs76681469 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop,maf-5-all-pops 600 chr1 1989031 1989032 rs140023738 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, 600 chr1 1989129 1989129 rs146536426 0 + - - -/C genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,C, 4344.000000,664.000000, 0.867412,0.132588, 600 chr1 1989475 1989475 rs200171430 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,T, 4957.000000,51.000000, 0.989816,0.010184, 600 chr1 1989495 1989496 rs75494970 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4101.000000,907.000000, 0.818890,0.181110, 600 chr1 1989605 1989606 rs182159227 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,T, 81.000000,4927.000000, 0.016174,0.983826, 600 chr1 1990097 1990098 rs113954706 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, 600 chr1 1990660 1990661 rs60299298 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 600 chr1 1990814 1990815 rs1878744 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4341.000000,667.000000, 0.866813,0.133187, maf-5-some-pop,maf-5-all-pops 600 chr1 1991013 1991014 rs1878745 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 23 1000GENOMES,ABI,APPLERA_GI,BCM-HGSC-SUB,BCM_SSAHASNP,CANCER-GENOME,CLINSEQ_SNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SEQUENOM,SHGC,SSMP,TISHKOFF,TSC-CSHL,WIAF-CSNP,YUSUKE, 2 A,G, 3818.000000,1190.000000, 0.762380,0.237620, maf-5-some-pop,maf-5-all-pops 600 chr1 1991122 1991123 rs1878746 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SHGC,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 909.000000,4099.000000, 0.181510,0.818490, maf-5-some-pop,maf-5-all-pops 600 chr1 1991136 1991137 rs2292859 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SHGC,SSMP,TISHKOFF,YUSUKE, 2 A,G, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1991161 1991162 rs1878747 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SHGC,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 A,G, 2132.000000,2876.000000, 0.425719,0.574281, maf-5-some-pop,maf-5-all-pops 600 chr1 1991172 1991173 rs2247923 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SHGC,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1831.000000,3177.000000, 0.365615,0.634385, maf-5-some-pop,maf-5-all-pops 600 chr1 1991301 1991302 rs1105099 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1180.000000,3828.000000, 0.235623,0.764377, maf-5-some-pop,maf-5-all-pops 600 chr1 1991328 1991329 rs76366054 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 600 chr1 1991651 1991652 rs908737 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4553.000000,455.000000, 0.909145,0.090855, maf-5-some-pop,maf-5-all-pops 600 chr1 1991926 1991927 rs186847794 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4258.000000,750.000000, 0.850240,0.149760, 600 chr1 1991953 1991954 rs6698042 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,HGSV,SSMP, 2 C,T, 4103.000000,905.000000, 0.819289,0.180711, 600 chr1 1992389 1992390 rs6691398 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 919.000000,4089.000000, 0.183506,0.816494, maf-5-some-pop,maf-5-all-pops 600 chr1 1992669 1992670 rs117150818 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 600 chr1 1992747 1992748 rs6605074 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4096.000000,912.000000, 0.817891,0.182109, maf-5-some-pop 600 chr1 1992757 1992758 rs80109925 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop,maf-5-all-pops 600 chr1 1993560 1993561 rs78819492 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 600 chr1 1993658 1993659 rs80027812 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 600 chr1 1993687 1993688 rs79659140 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1993704 1993705 rs76778490 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1993827 1993828 rs60948256 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1993859 1993860 rs60959039 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop,maf-5-all-pops 600 chr1 1993921 1993922 rs540202774 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 1037.000000,3971.000000, 0.207069,0.792931, 600 chr1 1993946 1993947 rs76520107 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4910.000000,98.000000, 0.980431,0.019569, 600 chr1 1994109 1994110 rs28828480 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4853.000000,155.000000, 0.969050,0.030950, 600 chr1 1994221 1994222 rs58064695 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,HGSV,SSMP, 2 C,T, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop,maf-5-all-pops 600 chr1 1994223 1994224 rs56963115 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,HGSV,SSMP, 2 G,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1994240 1994243 rs61282504 0 + AAA AAA -/AAA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HGSV,SSMP, 2 -,AAA, 250.000000,4758.000000, 0.049920,0.950080, 600 chr1 1994243 1994244 rs57112956 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,T, 4758.000000,250.000000, 0.950080,0.049920, 600 chr1 1994269 1994270 rs116634602 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 600 chr1 1994298 1994299 rs59095280 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop,maf-5-all-pops 600 chr1 1994391 1994392 rs57893502 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,SSMP, 2 A,T, 250.000000,4758.000000, 0.049920,0.950080, 600 chr1 1994507 1994508 rs28820884 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,HGSV,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 617.000000,4391.000000, 0.123203,0.876797, 600 chr1 1994709 1994710 rs117486254 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop,maf-5-all-pops 600 chr1 1994752 1994753 rs74612275 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 250.000000,4758.000000, 0.049920,0.950080, 600 chr1 1994820 1994821 rs28888081 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 912.000000,4096.000000, 0.182109,0.817891, 600 chr1 1995172 1995173 rs79468860 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 922.000000,4086.000000, 0.184105,0.815895, maf-5-some-pop,maf-5-all-pops 600 chr1 1995210 1995211 rs117541835 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop,maf-5-all-pops 600 chr1 1995284 1995285 rs551194608 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 1490.000000,3518.000000, 0.297524,0.702476, 600 chr1 1995432 1995433 rs28879779 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 600 chr1 1995460 1995461 rs2803289 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1326.000000,3682.000000, 0.264776,0.735224, 600 chr1 1995576 1995577 rs76113647 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1996001 1996002 rs115607539 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 600 chr1 1996219 1996220 rs78369369 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 600 chr1 1996226 1996227 rs28789425 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1996275 1996276 rs2678937 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4341.000000,667.000000, 0.866813,0.133187, maf-5-some-pop,maf-5-all-pops 600 chr1 1996298 1996299 rs28878194 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1996381 1996382 rs28756503 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,G, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1996434 1996435 rs28872609 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1996579 1996580 rs2678938 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1681.000000,3327.000000, 0.335663,0.664337, maf-5-some-pop 600 chr1 1996838 1996839 rs76400492 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 600 chr1 1996854 1996855 rs28786981 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,C, 156.000000,4852.000000, 0.031150,0.968850, 600 chr1 1996918 1996919 rs146393551 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 600 chr1 1996926 1996927 rs78781018 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 250.000000,4758.000000, 0.049920,0.950080, 600 chr1 1996933 1996934 rs2803293 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1625.000000,3383.000000, 0.324481,0.675519, maf-5-some-pop,maf-5-all-pops 600 chr1 1996989 1996990 rs78698540 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, 600 chr1 1996994 1996995 rs59090407 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 641.000000,4367.000000, 0.127995,0.872005, 600 chr1 1997031 1997032 rs142308523 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4758.000000,250.000000, 0.950080,0.049920, 600 chr1 1997149 1997150 rs2803294 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PERLEGEN,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 A,G, 2465.000000,2543.000000, 0.492212,0.507788, maf-5-some-pop,maf-5-all-pops 600 chr1 1997160 1997161 rs28622246 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,SSAHASNP,SSMP, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop,maf-5-all-pops 600 chr1 1997186 1997187 rs75227206 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4061.000000,947.000000, 0.810903,0.189097, maf-5-some-pop,maf-5-all-pops 600 chr1 1997349 1997350 rs78414760 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop,maf-5-all-pops 600 chr1 1997576 1997577 rs77447626 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, 600 chr1 1997577 1997578 rs75204959 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 G,T, 250.000000,4758.000000, 0.049920,0.950080, 600 chr1 1997608 1997609 rs77039101 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1997797 1997797 rs148986496 0 + - - -/TCTC genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,TCTC, 4375.000000,633.000000, 0.873602,0.126398, 600 chr1 1997800 1997801 rs78702392 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,JMKIDD_LAB, 2 C,G, 4924.000000,84.000000, 0.983227,0.016773, 600 chr1 1998219 1998220 rs76363202 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop,maf-5-all-pops 600 chr1 1998314 1998315 rs2803300 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1670.000000,3338.000000, 0.333466,0.666534, maf-5-some-pop,maf-5-all-pops 600 chr1 1998376 1998377 rs59768895 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1998379 1998380 rs57869547 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop,maf-5-all-pops 600 chr1 1998507 1998508 rs57048277 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop,maf-5-all-pops 600 chr1 1998592 1998593 rs61601646 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,GMI,HGSV,SSMP, 2 G,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 600 chr1 1998649 1998650 rs58448120 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,LUNTER,SSMP, 2 -,C, 170.000000,4838.000000, 0.033946,0.966054, 600 chr1 1998692 1998693 rs77062007 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop,maf-5-all-pops 600 chr1 1998715 1998716 rs28626100 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4328.000000,680.000000, 0.864217,0.135783, maf-5-some-pop,maf-5-all-pops 600 chr1 1998861 1998862 rs75174864 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop,maf-5-all-pops 600 chr1 1998963 1998964 rs77496767 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 917.000000,4091.000000, 0.183107,0.816893, maf-5-some-pop,maf-5-all-pops 600 chr1 1999000 1999001 rs78755954 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,SSMP, 2 A,G, 633.000000,4375.000000, 0.126398,0.873602, maf-5-some-pop,maf-5-all-pops 600 chr1 1999005 1999006 rs28403969 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 815.000000,4193.000000, 0.162740,0.837260, maf-5-some-pop,maf-5-all-pops 600 chr1 1999287 1999288 rs2459985 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3337.000000,1671.000000, 0.666334,0.333666, maf-5-some-pop 600 chr1 1999344 1999345 rs28523801 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 789.000000,4219.000000, 0.157548,0.842452, maf-5-some-pop 600 chr1 1999599 1999600 rs2803301 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,T, 4374.000000,634.000000, 0.873403,0.126597, maf-5-some-pop,maf-5-all-pops 600 chr1 1999662 1999663 rs114862970 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 600 chr1 1999679 1999680 rs28479788 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 474.000000,4534.000000, 0.094649,0.905351, maf-5-some-pop,maf-5-all-pops 600 chr1 1999707 1999707 rs140974664 0 + - - -/C genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,C, 4701.000000,307.000000, 0.938698,0.061302, 600 chr1 2000094 2000095 rs114889562 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop,maf-5-all-pops 600 chr1 2000336 2000337 rs4454477 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP, 2 A,G, 304.000000,4704.000000, 0.060703,0.939297, maf-5-some-pop 600 chr1 2000403 2000404 rs4511053 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 309.000000,4699.000000, 0.061701,0.938299, maf-5-some-pop 600 chr1 2000591 2000592 rs2678939 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2423.000000,2585.000000, 0.483826,0.516174, maf-5-some-pop,maf-5-all-pops 600 chr1 2001096 2001097 rs114129279 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 600 chr1 2001200 2001201 rs2678940 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop,maf-5-all-pops 600 chr1 2001272 2001273 rs2678941 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1653.000000,3355.000000, 0.330072,0.669928, maf-5-some-pop,maf-5-all-pops 600 chr1 2001294 2001295 rs2803302 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1890.000000,3118.000000, 0.377396,0.622604, maf-5-some-pop,maf-5-all-pops 600 chr1 2001855 2001856 rs2803303 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1648.000000,3360.000000, 0.329073,0.670927, maf-5-some-pop,maf-5-all-pops 600 chr1 2002217 2002218 rs3107127 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BUSHMAN,ENSEMBL,HGSV,ILLUMINA-UK,SC_JCM,SSMP, 2 A,G, 714.000000,4294.000000, 0.142572,0.857428, maf-5-some-pop,maf-5-all-pops 600 chr1 2002224 2002225 rs28436888 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 600 chr1 2002320 2002321 rs79594036 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, 600 chr1 2002378 2002379 rs74696899 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 600 chr1 2002388 2002389 rs77895939 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 600 chr1 2002516 2002517 rs114538145 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 600 chr1 2002566 2002567 rs80122338 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 600 chr1 2002708 2002709 rs75358283 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 600 chr1 2002787 2002788 rs78968431 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 600 chr1 2002806 2002807 rs113197144 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 600 chr1 2002813 2002814 rs117631420 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 600 chr1 2002818 2002819 rs117005246 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 600 chr1 2002925 2002926 rs76394063 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop,maf-5-all-pops 600 chr1 2002943 2002944 rs75127108 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 600 chr1 2003020 2003021 rs76645434 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 600 chr1 2003455 2003456 rs77527318 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 600 chr1 2003590 2003591 rs74322154 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 600 chr1 2003822 2003823 rs116385370 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 600 chr1 2004097 2004098 rs6663158 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 1920.000000,3088.000000, 0.383387,0.616613, maf-5-some-pop,maf-5-all-pops 600 chr1 2004877 2004878 rs16824683 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,KYUGEN,SSMP, 2 A,C, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop 600 chr1 2004907 2004908 rs1878748 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,ABI,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 668.000000,4340.000000, 0.133387,0.866613, 600 chr1 2004935 2004936 rs1878749 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF,TSC-CSHL, 2 C,G, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 600 chr1 2004946 2004947 rs2678942 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KYUGEN,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3361.000000,1647.000000, 0.671126,0.328874, maf-5-some-pop,maf-5-all-pops 600 chr1 2004953 2004954 rs16824694 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,GMI,ILLUMINA,KRIBB_YJKIM,KYUGEN,SSMP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop 600 chr1 2005669 2005670 rs78053931 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 600 chr1 2005739 2005740 rs2459986 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop 600 chr1 2005804 2005805 rs28694018 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop,maf-5-all-pops 600 chr1 2005909 2005910 rs79509884 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 600 chr1 2006062 2006063 rs114281089 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 600 chr1 2006293 2006293 rs150386103 0 + - - -/T genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,T, 3410.000000,1598.000000, 0.680911,0.319089, 600 chr1 2006902 2006903 rs2803305 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 514.000000,4494.000000, 0.102636,0.897364, maf-5-some-pop,maf-5-all-pops 600 chr1 2006940 2006941 rs2678944 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4494.000000,514.000000, 0.897364,0.102636, maf-5-some-pop,maf-5-all-pops 600 chr1 2006951 2006952 rs79429003 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 600 chr1 2007163 2007164 rs116699701 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 600 chr1 2007182 2007183 rs147118205 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, 600 chr1 2007197 2007198 rs78631313 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 600 chr1 2007290 2007291 rs2803306 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4331.000000,677.000000, 0.864816,0.135184, maf-5-some-pop,maf-5-all-pops 600 chr1 2007582 2007583 rs78044409 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 600 chr1 2007673 2007674 rs2803307 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 348.000000,4660.000000, 0.069489,0.930511, maf-5-some-pop 600 chr1 2008053 2008054 rs146551864 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 150.000000,4858.000000, 0.029952,0.970048, 600 chr1 2008139 2008140 rs112575142 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 600 chr1 2008142 2008143 rs141408013 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 600 chr1 2008383 2008384 rs2490549 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3325.000000,1683.000000, 0.663938,0.336062, maf-5-some-pop 600 chr1 2008557 2008558 rs2490551 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4334.000000,674.000000, 0.865415,0.134585, maf-5-some-pop,maf-5-all-pops 600 chr1 2008687 2008688 rs28652946 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1576.000000,3432.000000, 0.314696,0.685304, maf-5-some-pop,maf-5-all-pops 600 chr1 2008735 2008736 rs2490552 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1685.000000,3323.000000, 0.336462,0.663538, maf-5-some-pop 600 chr1 2008881 2008882 rs80151664 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 600 chr1 2009516 2009517 rs2459987 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 674.000000,4334.000000, 0.134585,0.865415, maf-5-some-pop,maf-5-all-pops 600 chr1 2009548 2009549 rs59023632 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,C, 665.000000,4343.000000, 0.132788,0.867212, 600 chr1 2009550 2009551 rs72636371 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 600 chr1 2009585 2009586 rs68185203 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4495.000000,513.000000, 0.897564,0.102436, maf-5-some-pop,maf-5-all-pops 600 chr1 2009829 2009830 rs111415953 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 600 chr1 2010547 2010548 rs28470807 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3431.000000,1577.000000, 0.685104,0.314896, 600 chr1 2010569 2010570 rs28414284 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1575.000000,3433.000000, 0.314497,0.685503, maf-5-some-pop,maf-5-all-pops 600 chr1 2010575 2010576 rs28523336 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2964.000000,2044.000000, 0.591853,0.408147, maf-5-some-pop,maf-5-all-pops 600 chr1 2010610 2010611 rs114994885 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 600 chr1 2010660 2010661 rs116400296 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 600 chr1 2010668 2010669 rs2803342 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4135.000000,873.000000, 0.825679,0.174321, maf-5-some-pop,maf-5-all-pops 600 chr1 2010732 2010733 rs2803343 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2147.000000,2861.000000, 0.428714,0.571286, maf-5-some-pop,maf-5-all-pops 600 chr1 2010795 2010796 rs2803344 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4334.000000,674.000000, 0.865415,0.134585, maf-5-some-pop,maf-5-all-pops 600 chr1 2010985 2010986 rs371409282 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 600 chr1 2011081 2011082 rs72921240 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 600 chr1 2011115 2011116 rs28475011 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3228.000000,1780.000000, 0.644569,0.355431, maf-5-some-pop,maf-5-all-pops 600 chr1 2011143 2011144 rs76162525 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 600 chr1 2011335 2011336 rs117068610 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 600 chr1 2011340 2011341 rs2803345 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP, 2 A,G, 1660.000000,3348.000000, 0.331470,0.668530, maf-5-some-pop,maf-5-all-pops 600 chr1 2011377 2011378 rs114665555 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4904.000000,104.000000, 0.979233,0.020767, 600 chr1 2011593 2011594 rs77283819 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop,maf-5-all-pops 600 chr1 2011760 2011760 rs527770824 0 + - - -/GGCAGTGCGCGTGGACGT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GGCAGTGCGCGTGGACGT, 4813.000000,195.000000, 0.961062,0.038938, 600 chr1 2011764 2011764 rs370495465 0 + - - -/GTGCGCGTGGACGTGGCG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,GTGCGCGTGGACGTGGCG, 4540.000000,468.000000, 0.906550,0.093451, 600 chr1 2011957 2011958 rs2803346 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1713.000000,3295.000000, 0.342053,0.657947, maf-5-some-pop,maf-5-all-pops 600 chr1 2012271 2012272 rs77078357 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 600 chr1 2012417 2012418 rs2678945 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1715.000000,3293.000000, 0.342452,0.657548, maf-5-some-pop 600 chr1 2012813 2012814 rs74692133 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 600 chr1 2012822 2012823 rs77907287 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 600 chr1 2012910 2012911 rs114921669 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 600 chr1 2013152 2013153 rs2490553 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP, 2 C,T, 2396.000000,2612.000000, 0.478435,0.521565, maf-5-some-pop 600 chr1 2013258 2013259 rs142467886 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4858.000000,150.000000, 0.970048,0.029952, 600 chr1 2013567 2013568 rs77437905 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 600 chr1 2013603 2013604 rs79447860 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 600 chr1 2013721 2013722 rs28510725 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 600 chr1 2013753 2013754 rs577214941 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 141.000000,4867.000000, 0.028155,0.971845, 600 chr1 2014195 2014196 rs28436686 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop 600 chr1 2014566 2014567 rs78642620 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 600 chr1 2014744 2014745 rs2678946 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4363.000000,645.000000, 0.871206,0.128794, maf-5-some-pop,maf-5-all-pops 600 chr1 2014768 2014768 rs111548580 0 + - - -/C genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP,TISHKOFF, 2 -,C, 4655.000000,353.000000, 0.929513,0.070487, 600 chr1 2015158 2015159 rs113254510 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 600 chr1 2015359 2015360 rs140310598 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 600 chr1 2015440 2015441 rs3121829 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2431.000000,2577.000000, 0.485423,0.514577, 600 chr1 2015456 2015457 rs74705360 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 84.000000,4924.000000, 0.016773,0.983227, 600 chr1 2015568 2015569 rs79496784 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 600 chr1 2015805 2015820 rs145692428 0 + GGTGCTGTCCGCTTC GGTGCTGTCCGCTTC -/GGTGCTGTCCGCTTC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GGTGCTGTCCGCTTC, 84.000000,4924.000000, 0.016773,0.983227, 600 chr1 2015968 2015969 rs2678947 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1784.000000,3224.000000, 0.356230,0.643770, maf-5-some-pop 600 chr1 2016157 2016158 rs113748579 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop,maf-5-all-pops 600 chr1 2016214 2016215 rs2678948 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1863.000000,3145.000000, 0.372005,0.627995, maf-5-some-pop,maf-5-all-pops 600 chr1 2016342 2016343 rs2678949 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2881.000000,2127.000000, 0.575280,0.424720, maf-5-some-pop,maf-5-all-pops 600 chr1 2016634 2016635 rs2459988 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1831.000000,3177.000000, 0.365615,0.634385, maf-5-some-pop 600 chr1 2016676 2016677 rs74697444 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 600 chr1 2016816 2016817 rs79749538 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 600 chr1 2017027 2017028 rs57169446 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 149.000000,4859.000000, 0.029752,0.970248, 600 chr1 2017082 2017083 rs538211643 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, 600 chr1 2017522 2017523 rs111936607 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, 600 chr1 2017640 2017641 rs7537615 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3445.000000,1563.000000, 0.687899,0.312101, 600 chr1 2018107 2018108 rs72921255 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 600 chr1 2018252 2018253 rs72921260 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 600 chr1 2018271 2018272 rs76676490 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop,maf-5-all-pops 600 chr1 2018651 2018652 rs2459989 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3046.000000,1962.000000, 0.608227,0.391773, 600 chr1 2018709 2018710 rs2490555 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4488.000000,520.000000, 0.896166,0.103834, 600 chr1 2018752 2018753 rs28654259 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4701.000000,307.000000, 0.938698,0.061302, 600 chr1 2018817 2018818 rs114068246 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 600 chr1 2018874 2018875 rs6678163 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1569.000000,3439.000000, 0.313299,0.686701, maf-5-some-pop,maf-5-all-pops 600 chr1 2019295 2019296 rs77507826 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 334.000000,4674.000000, 0.066693,0.933307, maf-5-some-pop,maf-5-all-pops 600 chr1 2019380 2019381 rs2459990 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop,maf-5-all-pops 600 chr1 2019705 2019706 rs1108262 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 600 chr1 2019942 2019943 rs908738 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop,maf-5-all-pops 600 chr1 2020003 2020004 rs79953122 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 600 chr1 2020005 2020006 rs72903312 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop,maf-5-all-pops 600 chr1 2020299 2020300 rs6693908 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2046.000000,2962.000000, 0.408546,0.591454, maf-5-some-pop,maf-5-all-pops 600 chr1 2020307 2020308 rs114841807 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 600 chr1 2020342 2020343 rs6701689 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2926.000000,2082.000000, 0.584265,0.415735, maf-5-some-pop,maf-5-all-pops 600 chr1 2020488 2020489 rs6694101 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2440.000000,2568.000000, 0.487220,0.512780, maf-5-some-pop,maf-5-all-pops 600 chr1 2020506 2020507 rs6684574 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2964.000000,2044.000000, 0.591853,0.408147, maf-5-some-pop,maf-5-all-pops 600 chr1 2020521 2020522 rs6684579 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2966.000000,2042.000000, 0.592252,0.407748, maf-5-some-pop,maf-5-all-pops 600 chr1 2020530 2020531 rs78487298 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 600 chr1 2020639 2020640 rs113829003 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 600 chr1 2021150 2021151 rs78564824 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, maf-5-some-pop,maf-5-all-pops 600 chr1 2021196 2021197 rs6699586 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2838.000000,2170.000000, 0.566693,0.433307, maf-5-some-pop,maf-5-all-pops 600 chr1 2021283 2021284 rs2490556 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3041.000000,1967.000000, 0.607228,0.392772, maf-5-some-pop,maf-5-all-pops 600 chr1 2021335 2021335 rs79100542 0 + - - -/A genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP,TISHKOFF, 2 -,A, 4383.000000,625.000000, 0.875200,0.124800, 600 chr1 2021384 2021385 rs2490557 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3270.000000,1738.000000, 0.652955,0.347045, maf-5-some-pop,maf-5-all-pops 600 chr1 2021517 2021518 rs79477783 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4722.000000,286.000000, 0.942891,0.057109, maf-5-some-pop,maf-5-all-pops 600 chr1 2021653 2021654 rs28642238 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops 600 chr1 2021770 2021771 rs2459991 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2198.000000,2810.000000, 0.438898,0.561102, maf-5-some-pop,maf-5-all-pops 600 chr1 2021841 2021842 rs28575376 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 600 chr1 2021924 2021924 rs61220591 0 + - - -/C genomic insertion unknown 0 0 intron between 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 4202.000000,806.000000, 0.839058,0.160942, 600 chr1 2022064 2022065 rs7541860 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 600 chr1 2022094 2022095 rs2490558 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4685.000000,323.000000, 0.935503,0.064497, maf-5-some-pop,maf-5-all-pops 600 chr1 2022097 2022098 rs2459992 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1808.000000,3200.000000, 0.361022,0.638978, maf-5-some-pop,maf-5-all-pops 600 chr1 2022381 2022382 rs17481997 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1570.000000,3438.000000, 0.313498,0.686502, maf-5-some-pop,maf-5-all-pops 600 chr1 2022503 2022504 rs117165990 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 600 chr1 2022556 2022557 rs2490559 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1808.000000,3200.000000, 0.361022,0.638978, maf-5-some-pop,maf-5-all-pops 600 chr1 2022676 2022677 rs2490560 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3199.000000,1809.000000, 0.638778,0.361222, maf-5-some-pop,maf-5-all-pops 600 chr1 2022722 2022723 rs138551338 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 670.000000,4338.000000, 0.133786,0.866214, 600 chr1 2023218 2023219 rs17232167 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP, 2 A,G, 404.000000,4604.000000, 0.080671,0.919329, maf-5-some-pop,maf-5-all-pops 600 chr1 2023395 2023396 rs111854428 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, 600 chr1 2023503 2023504 rs2490561 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 3295.000000,1713.000000, 0.657947,0.342053, maf-5-some-pop 600 chr1 2023504 2023505 rs114545558 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 600 chr1 2023511 2023512 rs116303242 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, 600 chr1 2023791 2023792 rs2249670 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,YUSUKE, 2 C,T, 3345.000000,1663.000000, 0.667931,0.332069, maf-5-some-pop,maf-5-all-pops 600 chr1 2023795 2023796 rs2459993 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP, 2 A,G, 1663.000000,3345.000000, 0.332069,0.667931, maf-5-some-pop,maf-5-all-pops 600 chr1 2023853 2023854 rs2292861 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 540.000000,4468.000000, 0.107827,0.892173, maf-5-some-pop 600 chr1 2024041 2024042 rs56896449 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4545.000000,463.000000, 0.907548,0.092452, maf-5-some-pop,maf-5-all-pops 600 chr1 2024063 2024064 rs2459994 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3214.000000,1794.000000, 0.641773,0.358227, maf-5-some-pop 600 chr1 2024438 2024439 rs9725379 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop,maf-5-all-pops 600 chr1 2024504 2024505 rs112019100 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,A, 216.000000,4792.000000, 0.043131,0.956869, 600 chr1 2024624 2024625 rs59417020 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 600 chr1 2024776 2024777 rs114899068 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 600 chr1 2024866 2024867 rs3107128 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SC_JCM,TISHKOFF, 2 C,T, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop,maf-5-all-pops 600 chr1 2025042 2025043 rs3107129 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2118.000000,2890.000000, 0.422923,0.577077, maf-5-some-pop,maf-5-all-pops 600 chr1 2025332 2025333 rs12732952 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4480.000000,528.000000, 0.894569,0.105431, maf-5-some-pop 600 chr1 2025416 2025417 rs3128325 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop,maf-5-all-pops 600 chr1 2025440 2025441 rs74382879 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop,maf-5-all-pops 600 chr1 2025538 2025539 rs12026498 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 599.000000,4409.000000, 0.119609,0.880391, maf-5-some-pop,maf-5-all-pops 600 chr1 2025606 2025607 rs61775405 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop,maf-5-all-pops 600 chr1 2025708 2025709 rs3107130 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop,maf-5-all-pops 600 chr1 2025885 2025886 rs35994109 0 - G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 4 A,C,G,T, 405.000000,4603.000000,4603.000000,405.000000, 0.040435,0.459565,0.459565,0.040435, 600 chr1 2025899 2025900 rs3107131 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_JCM,WI_SSAHASNP, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 600 chr1 2026360 2026361 rs12755035 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 586.000000,4422.000000, 0.117013,0.882987, maf-5-some-pop 600 chr1 2026402 2026403 rs3128326 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 3679.000000,1329.000000, 0.734625,0.265375, maf-5-some-pop,maf-5-all-pops 600 chr1 2026679 2026680 rs80126817 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop,maf-5-all-pops 600 chr1 2027103 2027104 rs140637915 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 600 chr1 2027167 2027168 rs12743672 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 C,T, 4477.000000,531.000000, 0.893970,0.106030, maf-5-some-pop,maf-5-all-pops 600 chr1 2027169 2027170 rs6603814 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,T, 1414.000000,3594.000000, 0.282348,0.717652, maf-5-some-pop,maf-5-all-pops 600 chr1 2027258 2027259 rs183835347 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 600 chr1 2027358 2027359 rs117760611 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 600 chr1 2027548 2027549 rs190368324 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,TISHKOFF,WARNICH_LAB, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 600 chr1 2027777 2027778 rs189801142 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 600 chr1 2027972 2027973 rs113902281 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop,maf-5-all-pops 600 chr1 2028049 2028050 rs3107133 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 A,G, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop,maf-5-all-pops 600 chr1 2028059 2028060 rs61775407 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 600 chr1 2028120 2028121 rs79653337 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, 600 chr1 2028126 2028127 rs12028718 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4456.000000,552.000000, 0.889776,0.110224, maf-5-some-pop 600 chr1 2028272 2028273 rs3107134 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SC_JCM,TISHKOFF, 2 A,G, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop,maf-5-all-pops 600 chr1 2028556 2028557 rs76891611 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 600 chr1 2028578 2028579 rs115928411 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, 600 chr1 2028579 2028580 rs114209819 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 52.000000,4956.000000, 0.010383,0.989617, 600 chr1 2028636 2028637 rs3107135 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 600 chr1 2028682 2028683 rs79429680 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, 600 chr1 2028718 2028719 rs3107136 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops 600 chr1 2028736 2028737 rs12563290 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop 600 chr1 2029032 2029033 rs78674591 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 600 chr1 2029041 2029042 rs72914889 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 600 chr1 2029140 2029141 rs144923573 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 113.000000,4895.000000, 0.022564,0.977436, 600 chr1 2029206 2029207 rs3128328 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3706.000000,1302.000000, 0.740016,0.259984, maf-5-some-pop,maf-5-all-pops 600 chr1 2029315 2029316 rs114314512 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 600 chr1 2029391 2029392 rs3128329 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4800.000000,208.000000, 0.958466,0.041534, 600 chr1 2029419 2029419 rs78774885 0 + - - -/T genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,T, 4941.000000,67.000000, 0.986621,0.013379, 600 chr1 2029533 2029533 rs368828322 0 + - - -/G genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,G, 2662.000000,2346.000000, 0.531550,0.468450, 600 chr1 2029539 2029549 rs372567620 0 + AGGTCAGAGC AGGTCAGAGC -/AGGTCAGAGC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,BILGI_BIOE, 2 -,AGGTCAGAGC, 1778.000000,3230.000000, 0.355032,0.644968, 600 chr1 2029549 2029549 rs148361309 0 + - - -/AGGTGACCAGGAGTGACTA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,AGGTGACCAGGAGTGACTA, 2673.000000,2335.000000, 0.533746,0.466254, 600 chr1 2029843 2029844 rs115937080 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 600 chr1 2029878 2029879 rs151234276 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, 600 chr1 2030007 2030009 rs58602729 0 + CT CT -/CT genomic deletion unknown 0 0 intron range 1 9 1000GENOMES,BL,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,CT, 2990.000000,2018.000000, 0.597045,0.402955, 600 chr1 2030101 2030101 rs537452937 0 + - - -/GTTTT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GTTTT, 4826.000000,182.000000, 0.963658,0.036342, 600 chr1 2030865 2030866 rs908739 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 4792.000000,216.000000, 0.956869,0.043131, maf-5-some-pop 600 chr1 2030976 2030977 rs867308 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1928.000000,3080.000000, 0.384984,0.615016, maf-5-some-pop,maf-5-all-pops 600 chr1 2031101 2031103 rs147420676 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,AG, 55.000000,4953.000000, 0.010982,0.989018, 600 chr1 2031102 2031103 rs189971902 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 365.000000,4643.000000, 0.072883,0.927117, 600 chr1 2031356 2031357 rs58470845 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4553.000000,455.000000, 0.909145,0.090855, maf-5-some-pop,maf-5-all-pops 600 chr1 2031574 2031575 rs74979534 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 600 chr1 2031989 2031990 rs78230565 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 600 chr1 2032052 2032053 rs908740 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_JCM,TSC-CSHL, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 600 chr1 2032190 2032191 rs12073657 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop,maf-5-all-pops 600 chr1 2033108 2033109 rs3128330 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2865.000000,2143.000000, 0.572085,0.427915, maf-5-some-pop,maf-5-all-pops 600 chr1 2033206 2033207 rs140080285 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 600 chr1 2033255 2033256 rs908742 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1877.000000,3131.000000, 0.374800,0.625200, maf-5-some-pop,maf-5-all-pops 600 chr1 2033373 2033374 rs3107137 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3635.000000,1373.000000, 0.725839,0.274161, maf-5-some-pop,maf-5-all-pops 600 chr1 2033383 2033384 rs3107138 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2989.000000,2019.000000, 0.596845,0.403155, maf-5-some-pop,maf-5-all-pops 600 chr1 2033500 2033501 rs1878751 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop 600 chr1 2033760 2033761 rs201135834 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 G,T, 86.000000,4922.000000, 0.017173,0.982827, 600 chr1 2033933 2033934 rs141754032 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 403.000000,4605.000000, 0.080471,0.919529, 600 chr1 2033960 2033961 rs376694188 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSIP,TISHKOFF, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, 600 chr1 2033971 2033972 rs7556569 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3276.000000,1732.000000, 0.654153,0.345847, 600 chr1 2033981 2033982 rs11583884 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 600 chr1 2033991 2033992 rs141829549 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 63.000000,4945.000000, 0.012580,0.987420, 600 chr1 2034038 2034039 rs7521371 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4913.000000,95.000000, 0.981030,0.018970, 600 chr1 2034049 2034050 rs60837153 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 279.000000,4729.000000, 0.055711,0.944289, 600 chr1 2034060 2034061 rs60548987 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 600 chr1 2034061 2034062 rs113733116 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, 600 chr1 2034319 2034320 rs112535133 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 600 chr1 2034801 2034802 rs3128331 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 A,G, 621.000000,4387.000000, 0.124002,0.875998, maf-5-some-pop,maf-5-all-pops 600 chr1 2034926 2034927 rs2139062 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 4251.000000,757.000000, 0.848842,0.151158, maf-5-some-pop,maf-5-all-pops 600 chr1 2034961 2034962 rs2139063 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,T, 4324.000000,684.000000, 0.863419,0.136581, maf-5-some-pop,maf-5-all-pops 600 chr1 2035378 2035379 rs10910029 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2346.000000,2662.000000, 0.468450,0.531550, maf-5-some-pop,maf-5-all-pops 600 chr1 2035683 2035684 rs10910030 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2176.000000,2832.000000, 0.434505,0.565495, maf-5-some-pop,maf-5-all-pops 600 chr1 2035798 2035799 rs10752741 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2809.000000,2199.000000, 0.560903,0.439097, maf-5-some-pop,maf-5-all-pops 600 chr1 2035976 2035977 rs10752742 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2351.000000,2657.000000, 0.469449,0.530551, maf-5-some-pop,maf-5-all-pops 600 chr1 2035978 2035979 rs76832540 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 600 chr1 2036262 2036263 rs10797413 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2830.000000,2178.000000, 0.565096,0.434904, maf-5-some-pop,maf-5-all-pops 600 chr1 2036576 2036577 rs77291722 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 600 chr1 2036596 2036597 rs3128332 0 + G G G/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop 600 chr1 2036649 2036650 rs117049609 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop,maf-5-all-pops 600 chr1 2037239 2037240 rs2102856 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,TSC-CSHL, 2 C,T, 614.000000,4394.000000, 0.122604,0.877396, maf-5-some-pop,maf-5-all-pops 600 chr1 2037370 2037371 rs114910796 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4948.000000,60.000000, 0.988019,0.011981, 600 chr1 2037382 2037383 rs4648619 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 826.000000,4182.000000, 0.164936,0.835064, maf-5-some-pop,maf-5-all-pops 600 chr1 2037422 2037423 rs12077634 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 226.000000,4782.000000, 0.045128,0.954872, maf-5-some-pop,maf-5-all-pops 600 chr1 2037748 2037749 rs113494220 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 600 chr1 2037907 2037908 rs3128333 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 2179.000000,2829.000000, 0.435104,0.564896, 600 chr1 2037925 2037926 rs148611022 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 3693.000000,1315.000000, 0.737420,0.262580, 600 chr1 2037926 2037927 rs144236779 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 3693.000000,1315.000000, 0.737420,0.262580, 600 chr1 2037945 2037946 rs112359187 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 3416.000000,1592.000000, 0.682109,0.317891, 600 chr1 2037950 2037950 rs537943741 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 3654.000000,1354.000000, 0.729633,0.270367, 600 chr1 2037964 2037965 rs7364595 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SSMP,WI_SSAHASNP, 2 C,T, 2485.000000,2523.000000, 0.496206,0.503794, 600 chr1 2037991 2037992 rs111637555 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,G, 4364.000000,644.000000, 0.871406,0.128594, 600 chr1 2038023 2038024 rs80289785 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL, 2 A,G, 2322.000000,2686.000000, 0.463658,0.536342, 600 chr1 2038041 2038042 rs78515586 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,EVA-GONL,SSMP, 2 C,T, 3478.000000,1530.000000, 0.694489,0.305511, 600 chr1 2038042 2038043 rs79733586 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 3478.000000,1530.000000, 0.694489,0.305511, 600 chr1 2038061 2038062 rs61775410 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 3647.000000,1361.000000, 0.728235,0.271765, 600 chr1 2038066 2038066 rs574107925 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,SSIP, 2 -,T, 3244.000000,1764.000000, 0.647764,0.352236, 600 chr1 2038196 2038197 rs7514664 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,SSAHASNP,WI_SSAHASNP, 2 C,T, 2526.000000,2482.000000, 0.504393,0.495607, 600 chr1 2038255 2038256 rs61775411 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,GMI,SSMP, 2 C,T, 1950.000000,3058.000000, 0.389377,0.610623, 600 chr1 2038289 2038290 rs3753240 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,YUSUKE, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 600 chr1 2038293 2038294 rs3753241 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,SSAHASNP,SSMP,WI_SSAHASNP,YUSUKE, 2 C,T, 2729.000000,2279.000000, 0.544928,0.455072, maf-5-some-pop,maf-5-all-pops 600 chr1 2038311 2038312 rs145431852 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 600 chr1 2038661 2038662 rs3128334 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2565.000000,2443.000000, 0.512181,0.487819, maf-5-some-pop,maf-5-all-pops 600 chr1 2038731 2038732 rs12410859 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3876.000000,1132.000000, 0.773962,0.226038, maf-5-some-pop,maf-5-all-pops 600 chr1 2038892 2038893 rs908744 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2470.000000,2538.000000, 0.493211,0.506789, maf-5-some-pop,maf-5-all-pops 600 chr1 2038929 2038930 rs72907434 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 600 chr1 2039235 2039236 rs1040231 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1304.000000,3704.000000, 0.260383,0.739617, maf-5-some-pop,maf-5-all-pops 600 chr1 2039326 2039327 rs546081752 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, 600 chr1 2039374 2039375 rs78532463 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 600 chr1 2039511 2039512 rs12086600 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 C,G, 112.000000,4896.000000, 0.022364,0.977636, 600 chr1 2039520 2039521 rs16824792 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 2487.000000,2521.000000, 0.496605,0.503395, maf-5-some-pop,maf-5-all-pops 600 chr1 2039718 2039719 rs1878752 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4157.000000,851.000000, 0.830072,0.169928, maf-5-some-pop,maf-5-all-pops 600 chr1 2039978 2039979 rs116072379 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop,maf-5-all-pops 600 chr1 2040095 2040096 rs6666117 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3774.000000,1234.000000, 0.753594,0.246406, maf-5-some-pop,maf-5-all-pops 600 chr1 2040387 2040388 rs6683011 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3699.000000,1309.000000, 0.738618,0.261382, maf-5-some-pop,maf-5-all-pops 600 chr1 2040452 2040453 rs59362943 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 774.000000,4234.000000, 0.154553,0.845447, maf-5-some-pop 600 chr1 2040458 2040459 rs117619321 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 600 chr1 2040762 2040763 rs4648805 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3710.000000,1298.000000, 0.740815,0.259185, maf-5-some-pop,maf-5-all-pops 600 chr1 2040784 2040785 rs6674878 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1038.000000,3970.000000, 0.207268,0.792732, maf-5-some-pop,maf-5-all-pops 600 chr1 2040839 2040840 rs150688014 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 600 chr1 2040897 2040898 rs4648807 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2532.000000,2476.000000, 0.505591,0.494409, maf-5-some-pop 600 chr1 2040935 2040936 rs4648808 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3966.000000,1042.000000, 0.791933,0.208067, maf-5-some-pop 600 chr1 2041021 2041022 rs149858276 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 600 chr1 2041041 2041042 rs144769072 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 600 chr1 2041052 2041053 rs72907441 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 600 chr1 2041154 2041155 rs10910046 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2492.000000,2516.000000, 0.497604,0.502396, maf-5-some-pop,maf-5-all-pops 600 chr1 2041235 2041236 rs3128335 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,SC_JCM,TISHKOFF, 2 A,G, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop,maf-5-all-pops 600 chr1 2041332 2041333 rs77198737 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 600 chr1 2041460 2041461 rs12059660 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2496.000000,2512.000000, 0.498403,0.501597, maf-5-some-pop,maf-5-all-pops 600 chr1 2041790 2041791 rs116130899 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 600 chr1 2041913 2041913 rs138692430 0 + - - -/GGT genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,GGT, 3908.000000,1100.000000, 0.780351,0.219649, 600 chr1 2042306 2042307 rs151253846 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, 600 chr1 2042335 2042336 rs12567763 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop 600 chr1 2042349 2042350 rs17372341 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1053.000000,3955.000000, 0.210264,0.789736, maf-5-some-pop,maf-5-all-pops 600 chr1 2042367 2042368 rs75187922 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 600 chr1 2042542 2042543 rs11584491 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2397.000000,2611.000000, 0.478634,0.521366, maf-5-some-pop,maf-5-all-pops 600 chr1 2042906 2042907 rs6690329 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 600 chr1 2042993 2042994 rs3128336 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 320.000000,4688.000000, 0.063898,0.936102, maf-5-some-pop 600 chr1 2043079 2043080 rs6603813 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1325.000000,3683.000000, 0.264577,0.735423, maf-5-some-pop,maf-5-all-pops 600 chr1 2043095 2043096 rs3107139 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 A,G, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,maf-5-all-pops 600 chr1 2043278 2043279 rs117018967 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop,maf-5-all-pops 600 chr1 2043625 2043626 rs77478543 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 600 chr1 2043781 2043782 rs3107140 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,TISHKOFF, 2 C,T, 4517.000000,491.000000, 0.901957,0.098043, maf-5-some-pop,maf-5-all-pops 600 chr1 2043791 2043792 rs7546523 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1095.000000,3913.000000, 0.218650,0.781350, maf-5-some-pop,maf-5-all-pops 600 chr1 2043960 2043961 rs559788271 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 65.000000,4943.000000, 0.012979,0.987021, 600 chr1 2043983 2043984 rs3107141 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 424.000000,4584.000000, 0.084665,0.915335, maf-5-some-pop 600 chr1 2044036 2044037 rs925905 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3275.000000,1733.000000, 0.653954,0.346046, maf-5-some-pop,maf-5-all-pops 600 chr1 2044129 2044130 rs528498089 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4905.000000,103.000000, 0.979433,0.020567, 600 chr1 2044130 2044132 rs555132032 0 + TT TT -/TT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TT, 4086.000000,922.000000, 0.815895,0.184105, 600 chr1 2044134 2044135 rs373698257 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 G,T, 4086.000000,922.000000, 0.815895,0.184105, 600 chr1 2044541 2044542 rs3107142 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3358.000000,1650.000000, 0.670527,0.329473, maf-5-some-pop,maf-5-all-pops 600 chr1 2044989 2044990 rs72907453 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 600 chr1 2045021 2045022 rs117503085 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 600 chr1 2045164 2045165 rs1467217 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2509.000000,2499.000000, 0.500998,0.499002, maf-5-some-pop,maf-5-all-pops 600 chr1 2045199 2045200 rs115242991 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4922.000000,86.000000, 0.982827,0.017173, 600 chr1 2045371 2045372 rs3107143 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,TISHKOFF, 2 C,G, 3229.000000,1779.000000, 0.644768,0.355232, maf-5-some-pop,maf-5-all-pops 600 chr1 2045375 2045376 rs61775448 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1779.000000,3229.000000, 0.355232,0.644768, 600 chr1 2045379 2045380 rs3107144 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3229.000000,1779.000000, 0.644768,0.355232, 600 chr1 2045418 2045419 rs117892656 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 600 chr1 2045453 2045454 rs57522446 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, 600 chr1 2045875 2045876 rs78395918 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1087.000000,3921.000000, 0.217053,0.782947, maf-5-some-pop,maf-5-all-pops 600 chr1 2045881 2045882 rs3128337 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1645.000000,3363.000000, 0.328474,0.671526, maf-5-some-pop,maf-5-all-pops 600 chr1 2045885 2045886 rs78609670 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3921.000000,1087.000000, 0.782947,0.217053, maf-5-some-pop,maf-5-all-pops 600 chr1 2046228 2046229 rs192491441 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 600 chr1 2046470 2046471 rs1467218 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop,maf-5-all-pops 600 chr1 2046536 2046537 rs79727931 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 600 chr1 2046715 2046716 rs140760989 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 4922.000000,86.000000, 0.982827,0.017173, 600 chr1 2046785 2046786 rs3128338 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3352.000000,1656.000000, 0.669329,0.330671, maf-5-some-pop,maf-5-all-pops 600 chr1 2046937 2046938 rs3128339 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1659.000000,3349.000000, 0.331270,0.668730, maf-5-some-pop,maf-5-all-pops 600 chr1 2047142 2047143 rs78497137 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 600 chr1 2047149 2047150 rs72907462 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4885.000000,123.000000, 0.975439,0.024561, 600 chr1 2047495 2047496 rs3128340 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1404.000000,3604.000000, 0.280351,0.719649, 600 chr1 2047546 2047547 rs3107145 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3553.000000,1455.000000, 0.709465,0.290535, maf-5-some-pop,maf-5-all-pops 600 chr1 2047822 2047823 rs114082890 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 600 chr1 2048212 2048213 rs114722764 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 600 chr1 2048390 2048391 rs150863463 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, 600 chr1 2048593 2048594 rs139247990 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WARNICH_LAB, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, 600 chr1 2048666 2048667 rs116203618 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4957.000000,51.000000, 0.989816,0.010184, 600 chr1 2048728 2048729 rs3107147 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3338.000000,1670.000000, 0.666534,0.333466, maf-5-some-pop,maf-5-all-pops 600 chr1 2048776 2048777 rs76082106 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 600 chr1 2048809 2048810 rs549863013 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 1519.000000,3489.000000, 0.303315,0.696685, 600 chr1 2048998 2048999 rs74315944 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 600 chr1 2049507 2049508 rs3128290 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP, 2 G,T, 1536.000000,3472.000000, 0.306709,0.693291, 600 chr1 2049520 2049521 rs151180314 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 600 chr1 2049598 2049599 rs3107148 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3426.000000,1582.000000, 0.684105,0.315895, 600 chr1 2049781 2049781 rs538249012 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 1859.000000,3149.000000, 0.371206,0.628794, 600 chr1 2050027 2050028 rs11589482 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, 600 chr1 2050194 2050195 rs3107149 0 + A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,SC_JCM, 2 A,T, 1578.000000,3430.000000, 0.315096,0.684904, 600 chr1 2050220 2050221 rs116286116 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 600 chr1 2050502 2050502 rs71578359 0 + - - -/T genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,SSMP, 2 -,T, 1456.000000,3552.000000, 0.290735,0.709265, 600 chr1 2050556 2050557 rs115594388 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 4930.000000,78.000000, 0.984425,0.015575, 600 chr1 2050743 2050744 rs147237062 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 600 chr1 2050924 2050925 rs3107150 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4947.000000,61.000000, 0.987819,0.012181, 600 chr1 2050967 2050968 rs75954386 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 600 chr1 2051228 2051228 rs536946000 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 2562.000000,2446.000000, 0.511581,0.488419, 600 chr1 2051327 2051328 rs150601824 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 600 chr1 2051492 2051493 rs56317795 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB, 2 C,T, 365.000000,4643.000000, 0.072883,0.927117, maf-5-some-pop,maf-5-all-pops 600 chr1 2051512 2051513 rs3107151 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3342.000000,1666.000000, 0.667332,0.332668, maf-5-some-pop,maf-5-all-pops 600 chr1 2051570 2051571 rs376886915 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4937.000000,71.000000, 0.985823,0.014177, 600 chr1 2052134 2052135 rs117150196 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 600 chr1 2052259 2052260 rs72907473 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 115.000000,4893.000000, 0.022963,0.977037, 600 chr1 2052440 2052441 rs140847922 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 600 chr1 2052496 2052497 rs3107152 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop 600 chr1 2052512 2052513 rs78665901 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3906.000000,1102.000000, 0.779952,0.220048, 600 chr1 2052544 2052545 rs116370174 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 600 chr1 2052663 2052664 rs79748977 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 600 chr1 2052727 2052728 rs61775450 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 576.000000,4432.000000, 0.115016,0.884984, maf-5-some-pop 600 chr1 2052756 2052757 rs114023262 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4930.000000,78.000000, 0.984425,0.015575, 600 chr1 2052764 2052765 rs72907476 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, 600 chr1 2052790 2052791 rs115114997 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4943.000000,65.000000, 0.987021,0.012979, 600 chr1 2052815 2052816 rs72907480 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 115.000000,4893.000000, 0.022963,0.977037, 600 chr1 2052911 2052915 rs559099298 0 + TAGT TAGT -/TAGT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TAGT, 119.000000,4889.000000, 0.023762,0.976238, 600 chr1 2052953 2052954 rs115933137 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,GMI,SSMP, 2 C,G, 3141.000000,1867.000000, 0.627196,0.372804, 600 chr1 2052957 2052958 rs74046934 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,BL,GMI,ILLUMINA-UK,SSMP, 2 A,G, 3141.000000,1867.000000, 0.627196,0.372804, 600 chr1 2052970 2052971 rs151226958 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BL, 2 A,G, 4447.000000,561.000000, 0.887979,0.112021, 600 chr1 2053017 2053018 rs75208339 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI, 2 C,T, 4145.000000,863.000000, 0.827676,0.172324, maf-5-some-pop,maf-5-all-pops 600 chr1 2053072 2053073 rs61775451 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,BL,GMI, 2 A,G, 443.000000,4565.000000, 0.088458,0.911542, 600 chr1 2053078 2053079 rs61775452 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,BL,GMI,HUMANGENOME_JCVI, 2 A,G, 500.000000,4508.000000, 0.099840,0.900160, 600 chr1 2053132 2053133 rs71511330 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,HUMANGENOME_JCVI, 2 A,G, 1520.000000,3488.000000, 0.303514,0.696486, 600 chr1 2053324 2053325 rs62641632 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI, 2 A,G, 1056.000000,3952.000000, 0.210863,0.789137, 600 chr1 2053414 2053415 rs556218333 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 823.000000,4185.000000, 0.164337,0.835663, 600 chr1 2053509 2053510 rs113487685 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,EVA-GONL,GMI, 2 C,T, 1982.000000,3026.000000, 0.395767,0.604233, 600 chr1 2054485 2054486 rs543792916 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 600 chr1 2054862 2054863 rs183816139 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 1734.000000,3274.000000, 0.346246,0.653754, 600 chr1 2054882 2054883 rs543130792 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 3005.000000,2003.000000, 0.600040,0.399960, 600 chr1 2055657 2055658 rs72468221 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,GMI,SSMP, 2 C,G, 1165.000000,3843.000000, 0.232628,0.767372, 600 chr1 2055662 2055663 rs61775456 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,BL,GMI,HUMANGENOME_JCVI, 2 C,T, 1307.000000,3701.000000, 0.260982,0.739018, 600 chr1 2055734 2055735 rs61776563 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,GMI,SSMP, 2 C,T, 1329.000000,3679.000000, 0.265375,0.734625, 600 chr1 2055841 2055842 rs369371664 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, 600 chr1 2055843 2055844 rs58955614 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 600 chr1 2055845 2055846 rs372854518 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 91.000000,4917.000000, 0.018171,0.981829, 600 chr1 2055849 2055850 rs74747369 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 1183.000000,3825.000000, 0.236222,0.763778, 600 chr1 2055855 2055856 rs11589827 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,SSMP, 2 A,G, 4366.000000,642.000000, 0.871805,0.128195, maf-5-some-pop,maf-5-all-pops 600 chr1 2056114 2056115 rs56260599 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4535.000000,473.000000, 0.905551,0.094449, maf-5-some-pop 600 chr1 2056309 2056310 rs78556921 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 600 chr1 2056609 2056610 rs117967167 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 600 chr1 2056665 2056666 rs74534542 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 600 chr1 2056724 2056725 rs78155038 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 600 chr1 2056734 2056735 rs3107153 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 709.000000,4299.000000, 0.141573,0.858427, maf-5-some-pop 600 chr1 2056873 2056874 rs74927551 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 600 chr1 2057502 2057503 rs75604597 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 600 chr1 2057538 2057539 rs79062022 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4895.000000,113.000000, 0.977436,0.022564, 600 chr1 2057749 2057750 rs3107154 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 A,C, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 600 chr1 2057929 2057930 rs79329035 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,maf-5-all-pops 600 chr1 2057958 2057959 rs114955559 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 600 chr1 2058022 2058023 rs3128291 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 600 chr1 2058090 2058091 rs118137464 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 600 chr1 2058122 2058123 rs149779224 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4886.000000,122.000000, 0.975639,0.024361, 600 chr1 2058579 2058580 rs12401379 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 1099.000000,3909.000000, 0.219449,0.780551, maf-5-some-pop,maf-5-all-pops 600 chr1 2058612 2058613 rs76224365 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop,maf-5-all-pops 600 chr1 2058620 2058621 rs117616682 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 600 chr1 2058833 2058834 rs560988755 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,C, 132.000000,4876.000000, 0.026358,0.973642, 600 chr1 2059011 2059012 rs117004101 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, 600 chr1 2059142 2059143 rs55826501 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1096.000000,3912.000000, 0.218850,0.781150, maf-5-some-pop,maf-5-all-pops 600 chr1 2059901 2059902 rs75615773 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 600 chr1 2059958 2059959 rs58172958 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 600 chr1 2060057 2060058 rs28719902 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4228.000000,780.000000, 0.844249,0.155751, maf-5-some-pop,maf-5-all-pops 600 chr1 2060355 2060356 rs78631384 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 600 chr1 2060418 2060419 rs114991106 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 600 chr1 2060523 2060524 rs3107155 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops 600 chr1 2060629 2060630 rs3107156 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3546.000000,1462.000000, 0.708067,0.291933, maf-5-some-pop,maf-5-all-pops 600 chr1 2060731 2060732 rs10797427 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2466.000000,2542.000000, 0.492412,0.507588, maf-5-some-pop,maf-5-all-pops 600 chr1 2061375 2061376 rs6603815 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4642.000000,366.000000, 0.926917,0.073083, maf-5-some-pop,maf-5-all-pops 600 chr1 2061772 2061773 rs72925847 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, 600 chr1 2062081 2062082 rs114127215 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 600 chr1 2062117 2062118 rs117587152 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 600 chr1 2062590 2062591 rs75427391 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 78.000000,4930.000000, 0.015575,0.984425, 600 chr1 2063093 2063094 rs1401137 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop,maf-5-all-pops 600 chr1 2063148 2063149 rs1401138 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3912.000000,1096.000000, 0.781150,0.218850, maf-5-some-pop,maf-5-all-pops 600 chr1 2063163 2063164 rs2222217 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3528.000000,1480.000000, 0.704473,0.295527, maf-5-some-pop,maf-5-all-pops 600 chr1 2063470 2063471 rs3128292 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,HGSV,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4411.000000,597.000000, 0.880791,0.119209, 600 chr1 2063471 2063472 rs61776567 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 803.000000,4205.000000, 0.160343,0.839657, 600 chr1 2063491 2063492 rs188284077 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 600 chr1 2063500 2063501 rs376551341 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 600 chr1 2063840 2063841 rs72925854 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 600 chr1 2064241 2064242 rs75797402 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 600 chr1 2064957 2064958 rs181416112 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 600 chr1 2065122 2065123 rs114782800 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 600 chr1 2065342 2065343 rs3128294 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,WUGSC_SSAHASNP, 2 C,G, 3538.000000,1470.000000, 0.706470,0.293530, maf-5-some-pop,maf-5-all-pops 600 chr1 2065578 2065579 rs61776568 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 G,T, 4890.000000,118.000000, 0.976438,0.023562, 600 chr1 2065948 2065949 rs74877653 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3880.000000,1128.000000, 0.774760,0.225240, maf-5-some-pop,maf-5-all-pops 600 chr1 2065957 2065958 rs77665022 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3881.000000,1127.000000, 0.774960,0.225040, maf-5-some-pop,maf-5-all-pops 600 chr1 2066035 2066035 rs77334925 0 + - - -/AT genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,LUNTER,TISHKOFF, 2 -,AT, 4061.000000,947.000000, 0.810903,0.189097, 600 chr1 2066421 2066422 rs577898999 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSIP, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 600 chr1 2067707 2067708 rs12744596 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 600 chr1 2068185 2068186 rs78152935 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop,maf-5-all-pops 600 chr1 2068479 2068480 rs3128295 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1500.000000,3508.000000, 0.299521,0.700479, maf-5-some-pop,maf-5-all-pops 600 chr1 2068713 2068714 rs56383911 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 984.000000,4024.000000, 0.196486,0.803514, maf-5-some-pop,maf-5-all-pops 600 chr1 2068905 2068906 rs3128296 0 + G G G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 334.000000,4674.000000, 0.066693,0.933307, maf-5-some-pop 600 chr1 2068921 2068922 rs2459996 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 A,G, 374.000000,4634.000000, 0.074680,0.925319, maf-5-some-pop,maf-5-all-pops 600 chr1 2069024 2069027 rs150160498 0 + CCT CCT -/CCT genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CCT, 803.000000,4205.000000, 0.160343,0.839657, 600 chr1 2069680 2069681 rs3753242 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,microattr-tpa 600 chr1 2069816 2069817 rs16824860 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 G,T, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop 600 chr1 2070077 2070077 rs140039460 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,A, 4666.000000,342.000000, 0.931709,0.068291, 600 chr1 2070099 2070100 rs3128297 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4637.000000,371.000000, 0.925919,0.074082, maf-5-some-pop 600 chr1 2070320 2070321 rs411021 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3881.000000,1127.000000, 0.774960,0.225040, 600 chr1 2070600 2070601 rs16824862 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,T, 4690.000000,318.000000, 0.936502,0.063498, maf-5-some-pop,maf-5-all-pops 600 chr1 2070878 2070879 rs111340248 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4695.000000,313.000000, 0.937500,0.062500, 600 chr1 2071339 2071340 rs424079 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 3156.000000,1852.000000, 0.630192,0.369808, maf-5-some-pop,maf-5-all-pops 600 chr1 2071555 2071556 rs436045 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1151.000000,3857.000000, 0.229832,0.770168, maf-5-some-pop,maf-5-all-pops 600 chr1 2071596 2071597 rs79605661 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 600 chr1 2071737 2071738 rs3128298 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4641.000000,367.000000, 0.926717,0.073283, maf-5-some-pop 600 chr1 2071764 2071765 rs364677 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1852.000000,3156.000000, 0.369808,0.630192, maf-5-some-pop,maf-5-all-pops 600 chr1 2072644 2072645 rs74879094 0 + T T G/T genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 600 chr1 2072999 2073000 rs2945573 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1129.000000,3879.000000, 0.225439,0.774561, 600 chr1 2073490 2073491 rs3128299 0 + A A A/C genomic single unknown 0 0 intron,ncRNA exact 1 7 CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP, 2 A,C, 4.000000,6.000000, 0.400000,0.600000, 600 chr1 2073558 2073559 rs193233275 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 A,G, 278.000000,4730.000000, 0.055511,0.944489, 600 chr1 2073830 2073831 rs28569008 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,SSAHASNP, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 600 chr1 2073845 2073846 rs56038539 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,SSAHASNP,SSMP, 2 C,T, 7.000000,3.000000, 0.700000,0.300000, 600 chr1 2074103 2074104 rs12026349 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop 600 chr1 2074536 2074537 rs142597385 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, 600 chr1 2074616 2074617 rs183817351 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 1 1000GENOMES, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 600 chr1 2074718 2074719 rs111251898 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4712.000000,296.000000, 0.940895,0.059105, 600 chr1 2075026 2075027 rs72925860 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF, 2 A,C, 4923.000000,85.000000, 0.983027,0.016973, 600 chr1 2075067 2075068 rs451061 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 1907.000000,3101.000000, 0.380791,0.619209, maf-5-some-pop,maf-5-all-pops 600 chr1 2075260 2075261 rs113961850 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 600 chr1 2075559 2075560 rs427811 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 14 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SEQUENOM,SHGC,SSMP,TISHKOFF, 2 G,T, 1130.000000,3878.000000, 0.225639,0.774361, maf-5-some-pop,maf-5-all-pops 600 chr1 2075813 2075814 rs3128303 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5,ncRNA exact 1 14 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SHGC,SSMP,TISHKOFF, 2 C,T, 4582.000000,426.000000, 0.914936,0.085064, maf-5-some-pop,maf-5-all-pops 600 chr1 2076054 2076055 rs384726 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SC_JCM, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, 600 chr1 2076327 2076328 rs75406924 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 600 chr1 2076362 2076363 rs76505143 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 600 chr1 2077265 2077266 rs9442616 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 455.000000,4553.000000, 0.090855,0.909145, maf-5-some-pop,maf-5-all-pops 600 chr1 2077408 2077409 rs385039 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SC_SNP,SHGC,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3879.000000,1129.000000, 0.774561,0.225439, maf-5-some-pop,maf-5-all-pops 600 chr1 2077871 2077872 rs2257684 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 3392.000000,1616.000000, 0.677316,0.322684, maf-5-some-pop,maf-5-all-pops 600 chr1 2078316 2078317 rs79531525 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 600 chr1 2078481 2078482 rs262676 0 - T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 600 chr1 2078556 2078557 rs196127 0 - T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 600 chr1 2078565 2078566 rs149435595 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4924.000000,84.000000, 0.983227,0.016773, 600 chr1 2078807 2078808 rs77713902 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 98.000000,4910.000000, 0.019569,0.980431, 600 chr1 2078921 2078922 rs12082939 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2618.000000,2390.000000, 0.522764,0.477236, maf-5-some-pop,maf-5-all-pops 600 chr1 2079190 2079191 rs375918922 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 114.000000,4894.000000, 0.022764,0.977236, 600 chr1 2079403 2079404 rs145090654 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,BL,GMI,LUNTER,SSMP,WARNICH_LAB, 2 -,C, 1632.000000,3376.000000, 0.325879,0.674121, 600 chr1 2079617 2079618 rs150168065 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 600 chr1 2079727 2079728 rs557262916 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, 600 chr1 2080455 2080456 rs70937053 0 + A A A/C genomic single unknown 0.0392 0.1344 intron exact 1 NonIntegerChromCount 1 SHGC, 2 A,C, 47.040001,0.960000, 0.980000,0.020000, 600 chr1 2081472 2081473 rs7542479 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF,WI_SSAHASNP, 2 C,T, 4764.000000,244.000000, 0.951278,0.048722, 600 chr1 2081548 2081549 rs7542500 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4715.000000,293.000000, 0.941494,0.058506, 600 chr1 2081593 2081594 rs7544743 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF,WI_SSAHASNP, 2 C,T, 4716.000000,292.000000, 0.941693,0.058307, 600 chr1 2081802 2081803 rs72925864 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop,maf-5-all-pops 600 chr1 2082504 2082505 rs9442619 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BROAD_DGAP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SHGC,SSMP,TISHKOFF, 2 C,T, 4584.000000,424.000000, 0.915335,0.084665, maf-5-some-pop 600 chr1 2082813 2082814 rs262666 0 - C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 600 chr1 2083515 2083516 rs79960719 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 600 chr1 2083536 2083537 rs262664 0 - G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 600 chr1 2083656 2083657 rs12082372 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_SNP, 2 C,G, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 600 chr1 2084985 2084986 rs59577840 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 4716.000000,292.000000, 0.941693,0.058307, maf-5-some-pop,maf-5-all-pops 600 chr1 2085665 2085666 rs3765920 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop 600 chr1 2085812 2085813 rs115498966 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 600 chr1 2086496 2086497 rs61776606 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 600 chr1 2086625 2086626 rs538680874 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 600 chr1 2086716 2086719 rs148522377 0 + TGA TGA -/TGA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TGA, 437.000000,4571.000000, 0.087260,0.912740, 600 chr1 2086718 2086719 rs202045511 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,TISHKOFF, 2 A,G, 4858.000000,150.000000, 0.970048,0.029952, 600 chr1 2086727 2086730 rs199729802 0 + GTA GTA -/GTA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GTA, 292.000000,4716.000000, 0.058307,0.941693, 600 chr1 2086881 2086884 rs147384181 0 + TGA TGA -/TGA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BL,LUNTER, 2 -,TGA, 1146.000000,3862.000000, 0.228834,0.771166, 600 chr1 2087035 2087038 rs145625268 0 + TGA TGA -/TGA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BL,GMI,SSMP,TISHKOFF, 2 -,TGA, 1128.000000,3880.000000, 0.225240,0.774760, 600 chr1 2087050 2087051 rs76654231 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop,maf-5-all-pops 600 chr1 2087094 2087094 rs144917548 0 + - - -/ATGATGATG genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BILGI_BIOE,LUNTER, 2 -,ATGATGATG, 2970.000000,2038.000000, 0.593051,0.406949, 600 chr1 2087556 2087557 rs3123592 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BROAD_DGAP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SHGC,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 424.000000,4584.000000, 0.084665,0.915335, maf-5-some-pop 600 chr1 2087988 2087989 rs114125274 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 81.000000,4927.000000, 0.016174,0.983826, 600 chr1 2088829 2088830 rs72925866 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop,maf-5-all-pops 600 chr1 2089204 2089205 rs78741022 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 112.000000,4896.000000, 0.022364,0.977636, 600 chr1 2089517 2089517 rs3835418 0 + - - -/T genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,T, 3880.000000,1128.000000, 0.774760,0.225240, 600 chr1 2089779 2089780 rs3765922 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,YUSUKE, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 600 chr1 2091288 2091289 rs71630966 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 600 chr1 2092282 2092283 rs12094159 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4581.000000,427.000000, 0.914736,0.085264, maf-5-some-pop 600 chr1 2092388 2092403 rs137867555 0 + GGCGCCGCCGTCGGG GGCGCCGCCGTCGGG -/GGCGCCGCCGTCGGG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GGCGCCGCCGTCGGG, 245.000000,4763.000000, 0.048922,0.951078, 600 chr1 2092901 2092902 rs3765925 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 600 chr1 2092914 2092915 rs151089576 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 600 chr1 2093575 2093576 rs72925867 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,T, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop,maf-5-all-pops 600 chr1 2095044 2095044 rs149613917 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,T, 4953.000000,55.000000, 0.989018,0.010982, 600 chr1 2095056 2095057 rs57855283 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4716.000000,292.000000, 0.941693,0.058307, 600 chr1 2095173 2095174 rs375062799 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,HUMANGENOME_JCVI,SSMP, 2 -,A, 1888.000000,3120.000000, 0.376997,0.623003, 600 chr1 2095504 2095505 rs72925869 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop,maf-5-all-pops 600 chr1 2095740 2095740 rs111855020 0 + - - -/ACCCCTGGGCCA genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,LUNTER, 2 -,ACCCCTGGGCCA, 2962.000000,2046.000000, 0.591454,0.408546, 600 chr1 2096239 2096240 rs3128304 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 411.000000,4597.000000, 0.082069,0.917931, maf-5-some-pop,maf-5-all-pops 600 chr1 2096255 2096256 rs72925871 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4760.000000,248.000000, 0.950479,0.049521, maf-5-some-pop,maf-5-all-pops 600 chr1 2096388 2096389 rs3128305 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop 600 chr1 2096420 2096421 rs3128306 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 411.000000,4597.000000, 0.082069,0.917931, maf-5-some-pop,maf-5-all-pops 600 chr1 2096637 2096638 rs3052 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WIAF, 2 C,T, 4597.000000,411.000000, 0.917931,0.082069, maf-5-some-pop 601 chr1 2098114 2098115 rs138176355 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,PJP, 2 -,C, 104.000000,4904.000000, 0.020767,0.979233, 601 chr1 2098285 2098286 rs3123594 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4565.000000,443.000000, 0.911542,0.088459, maf-5-some-pop,maf-5-all-pops 601 chr1 2098376 2098377 rs3128307 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 411.000000,4597.000000, 0.082069,0.917931, maf-5-some-pop,maf-5-all-pops 601 chr1 2098511 2098512 rs61776610 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 601 chr1 2098665 2098666 rs78441142 0 + C C C/T genomic single by-frequency,by-1000genomes 0.000918 0.0214 intron exact 1 1 1000GENOMES, 2 C,T, 118.000000,2.000000, 0.983333,0.016667, 601 chr1 2098830 2098831 rs3128308 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 411.000000,4597.000000, 0.082069,0.917931, maf-5-some-pop,maf-5-all-pops 601 chr1 2099322 2099325 rs143573707 0 + CCT CCT -/CCT genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,CCT, 1867.000000,3141.000000, 0.372804,0.627196, 601 chr1 2099378 2099379 rs78765534 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4762.000000,246.000000, 0.950879,0.049121, maf-5-some-pop,maf-5-all-pops 601 chr1 2099648 2099649 rs61385548 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop,maf-5-all-pops 601 chr1 2099700 2099701 rs75749854 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop,maf-5-all-pops 601 chr1 2101058 2101059 rs3737633 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SHGC,SSMP,YUSUKE, 2 C,G, 4509.000000,499.000000, 0.900359,0.099641, maf-5-some-pop 601 chr1 2101090 2101091 rs113136694 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,NHLBI-ESP, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, 601 chr1 2101720 2101721 rs75427288 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 601 chr1 2101933 2101933 rs112580214 0 + - - -/AGAT genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,LUNTER, 2 -,AGAT, 51.000000,4957.000000, 0.010184,0.989816, 601 chr1 2102084 2102085 rs118019790 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop,maf-5-all-pops 601 chr1 2102427 2102428 rs143846968 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 601 chr1 2102809 2102810 rs564778926 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 555.000000,4453.000000, 0.110823,0.889177, 601 chr1 2103505 2103506 rs2280272 0 + C C C/G genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,CANCER-GENOME,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SHGC,SSMP,YUSUKE, 2 C,G, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop 601 chr1 2104434 2104435 rs262642 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3589.000000,1419.000000, 0.716653,0.283347, 601 chr1 2104534 2104538 rs74865871 0 + CCAC CCAC -/CCAC genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,CCAC, 756.000000,4252.000000, 0.150958,0.849042, 601 chr1 2104980 2104981 rs262641 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3565.000000,1443.000000, 0.711861,0.288139, maf-5-some-pop,maf-5-all-pops 601 chr1 2105168 2105169 rs6688610 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop,maf-5-all-pops 601 chr1 2105877 2105878 rs3128309 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop 601 chr1 2105929 2105930 rs112692642 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 601 chr1 2106595 2106596 rs2292858 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop 601 chr1 2106761 2106762 rs262640 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ILLUMINA,ILLUMINA-UK,KWOK,NHLBI-ESP,SC_JCM,TISHKOFF, 2 A,C, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop,maf-5-all-pops 601 chr1 2106762 2106763 rs112493944 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 601 chr1 2106839 2106840 rs12135175 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, maf-5-some-pop,maf-5-all-pops 601 chr1 2106895 2106896 rs12135178 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSMP, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 601 chr1 2106990 2107014 rs201910396 0 + CTCCAACCCCTACACCCCCAACCC CTCCAACCCCTACACCCCCAACCC -/CTCCAACCCCTACACCCCCAACCC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,LUNTER, 2 -,CTCCAACCCCTACACCCCCAACCC, 326.000000,4682.000000, 0.065096,0.934904, 601 chr1 2107012 2107013 rs576972014 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 601 chr1 2107054 2107055 rs9442615 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 404.000000,4604.000000, 0.080671,0.919329, maf-5-some-pop,maf-5-all-pops 601 chr1 2107060 2107061 rs262639 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,KWOK,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3908.000000,1100.000000, 0.780351,0.219649, maf-5-some-pop,maf-5-all-pops 601 chr1 2107089 2107090 rs140368518 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 601 chr1 2107294 2107295 rs144995235 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 601 chr1 2109366 2109367 rs262693 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,KWOK,SC_JCM,TSC-CSHL, 2 A,G, 311.000000,4697.000000, 0.062101,0.937899, maf-5-some-pop,maf-5-all-pops 601 chr1 2109694 2109695 rs72925875 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 601 chr1 2109711 2109712 rs151017416 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 601 chr1 2110830 2110831 rs113382365 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 601 chr1 2110847 2110848 rs11587831 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 755.000000,4253.000000, 0.150759,0.849241, maf-5-some-pop,maf-5-all-pops 601 chr1 2111029 2111030 rs2460001 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 2395.000000,2613.000000, 0.478235,0.521765, maf-5-some-pop,maf-5-all-pops 601 chr1 2111171 2111172 rs77571433 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4946.000000,62.000000, 0.987620,0.012380, 601 chr1 2111253 2111254 rs72925878 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 601 chr1 2111316 2111317 rs72925880 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 601 chr1 2111824 2111825 rs116321131 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 601 chr1 2111851 2111852 rs72925881 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 601 chr1 2111999 2112000 rs116863568 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 601 chr1 2112098 2112099 rs77958421 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 142.000000,4866.000000, 0.028355,0.971645, 601 chr1 2113000 2113001 rs114183409 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 601 chr1 2113179 2113180 rs262690 0 + C C C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 8 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF, 2 C,G, 4698.000000,310.000000, 0.938099,0.061901, maf-5-some-pop 601 chr1 2113267 2113268 rs78769807 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop,maf-5-all-pops 601 chr1 2113658 2113659 rs199983202 0 + T T G/T genomic single unknown 0 0 intron,missense exact 1 2 1000GENOMES,CLINSEQ_SNP, 2 G,T, 294.000000,4714.000000, 0.058706,0.941294, 601 chr1 2113881 2113882 rs61730921 0 + G G A/G genomic single unknown 0 0 intron,missense exact 1 3 1000GENOMES,CORNELL,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 601 chr1 2114232 2114233 rs112277867 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 601 chr1 2114270 2114271 rs74912021 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop,maf-5-all-pops 601 chr1 2115821 2115822 rs61343432 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 601 chr1 2117229 2117230 rs114116988 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 601 chr1 2117557 2117558 rs3123595 0 + C C C/T genomic single unknown 0 0 coding-synon,intron,near-gene-5 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4284.000000,724.000000, 0.855431,0.144569, maf-5-some-pop 601 chr1 2117824 2117825 rs534159429 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSIP, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 601 chr1 2118465 2118466 rs116710939 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 601 chr1 2118721 2118722 rs60221056 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 G,T, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 601 chr1 2118865 2118866 rs138196577 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 601 chr1 2119636 2119637 rs115234914 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, 601 chr1 2119832 2119833 rs2460002 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 721.000000,4287.000000, 0.143970,0.856030, maf-5-some-pop 601 chr1 2120460 2120461 rs12145923 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SC_SNP, 2 A,C, 4864.000000,144.000000, 0.971246,0.028754, 601 chr1 2120624 2120625 rs2503700 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4251.000000,757.000000, 0.848842,0.151158, maf-5-some-pop 601 chr1 2121037 2121065 rs544754432 0 + GCGGGGGAGCCGAGAGGCGGGGCTGCTG GCGGGGGAGCCGAGAGGCGGGGCTGCTG -/GCGGGGGAGCCGAGAGGCGGGGCTGCTG genomic deletion unknown 0 0 intron,ncRNA,untranslated-3 range 1 1 1000GENOMES, 2 -,GCGGGGGAGCCGAGAGGCGGGGCTGCTG, 176.000000,4832.000000, 0.035144,0.964856, 601 chr1 2121750 2121751 rs111474129 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 601 chr1 2122506 2122507 rs142426586 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, 601 chr1 2122722 2122723 rs115906375 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,G, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop,maf-5-all-pops 601 chr1 2122882 2122883 rs114903263 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 601 chr1 2122961 2122962 rs12734675 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 601 chr1 2123534 2123535 rs16824907 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 7 1000GENOMES,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop 601 chr1 2124345 2124345 rs142041547 0 + - - -/TTG genomic insertion unknown 0 0 intron,ncRNA,cds-indel,untranslated-5 between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,TTG, 4956.000000,52.000000, 0.989617,0.010383, 601 chr1 2124580 2124581 rs72925890 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 300.000000,4708.000000, 0.059904,0.940096, maf-5-some-pop,maf-5-all-pops 601 chr1 2125171 2125172 rs1058411 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA,missense,untranslated-5 exact 1 16 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA-UK,JMKIDD_LAB,LEE,NHLBI-ESP,SC_JCM,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 A,G, 1041.000000,3967.000000, 0.207867,0.792133, maf-5-some-pop,maf-5-all-pops 601 chr1 2125941 2125942 rs71511332 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,HUMANGENOME_JCVI, 2 C,G, 2860.000000,2148.000000, 0.571086,0.428914, 601 chr1 2127433 2127434 rs2503711 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2357.000000,2651.000000, 0.470647,0.529353, maf-5-some-pop,maf-5-all-pops 601 chr1 2127673 2127674 rs115785083 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 601 chr1 2128068 2128069 rs262659 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4001.000000,1007.000000, 0.798922,0.201078, 601 chr1 2128277 2128278 rs117290036 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop,maf-5-all-pops 601 chr1 2128457 2128458 rs150073072 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, 601 chr1 2128583 2128584 rs117753008 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 601 chr1 2128647 2128648 rs12036736 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop 601 chr1 2128659 2128660 rs142571156 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 601 chr1 2128800 2128801 rs12036767 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,G, 340.000000,4668.000000, 0.067891,0.932109, maf-5-some-pop 601 chr1 2128803 2128804 rs74817143 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, 601 chr1 2128829 2128830 rs12036774 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 342.000000,4666.000000, 0.068291,0.931709, maf-5-some-pop 601 chr1 2129421 2129422 rs113883266 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,NHLBI-ESP,TISHKOFF, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, 601 chr1 2129732 2129733 rs72925893 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,T, 52.000000,4956.000000, 0.010383,0.989617, 601 chr1 2129951 2129952 rs58885719 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,T, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop,maf-5-all-pops 601 chr1 2130088 2130089 rs115372449 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 601 chr1 2130261 2130262 rs144802031 0 + C C C/G genomic single unknown 0 0 intron,missense exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4924.000000,84.000000, 0.983227,0.016773, 601 chr1 2131937 2131938 rs75285928 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 601 chr1 2133046 2133047 rs262658 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF, 2 A,G, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop,maf-5-all-pops 601 chr1 2133467 2133468 rs190599264 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 4924.000000,84.000000, 0.983227,0.016773, 601 chr1 2133470 2133471 rs180990542 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, 601 chr1 2133751 2133752 rs71511333 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,SSMP, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 601 chr1 2134308 2134309 rs75025948 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop,maf-5-all-pops 601 chr1 2134660 2134661 rs75420569 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 601 chr1 2136036 2136037 rs115436812 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 601 chr1 2136090 2136091 rs530680 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3947.000000,1061.000000, 0.788139,0.211861, maf-5-some-pop 601 chr1 2136326 2136340 rs201685233 0 + CCCTCAAGCCCCGC CCCTCAAGCCCCGC -/CCCTCAAGCCCCGC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CCCTCAAGCCCCGC, 1060.000000,3948.000000, 0.211661,0.788339, 601 chr1 2136550 2136551 rs557820126 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,C, 1263.000000,3745.000000, 0.252196,0.747804, 601 chr1 2137136 2137137 rs429136 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP, 2 A,G, 1017.000000,3991.000000, 0.203075,0.796925, maf-5-some-pop,maf-5-all-pops 601 chr1 2137367 2137368 rs2503712 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2438.000000,2570.000000, 0.486821,0.513179, maf-5-some-pop,maf-5-all-pops 601 chr1 2137376 2137377 rs114899272 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 601 chr1 2138549 2138550 rs12041259 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,G, 266.000000,4742.000000, 0.053115,0.946885, maf-5-some-pop,maf-5-all-pops 601 chr1 2139071 2139072 rs436543 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,SC_JCM, 2 A,G, 312.000000,4696.000000, 0.062300,0.937700, maf-5-some-pop 601 chr1 2139306 2139307 rs2503713 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 764.000000,4244.000000, 0.152556,0.847444, maf-5-some-pop 601 chr1 2139482 2139483 rs452229 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,SC_JCM,TISHKOFF, 2 C,T, 4707.000000,301.000000, 0.939896,0.060104, maf-5-some-pop,maf-5-all-pops 601 chr1 2139504 2139505 rs72925902 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 601 chr1 2139873 2139874 rs75276800 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,maf-5-all-pops 601 chr1 2140486 2140487 rs76238118 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 601 chr1 2141392 2141393 rs78767577 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 601 chr1 2141400 2141401 rs76650818 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 G,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 601 chr1 2141865 2141866 rs400132 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3882.000000,1126.000000, 0.775160,0.224840, maf-5-some-pop,maf-5-all-pops 601 chr1 2142342 2142343 rs115972872 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 601 chr1 2142517 2142518 rs380190 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3901.000000,1107.000000, 0.778954,0.221046, maf-5-some-pop,maf-5-all-pops 601 chr1 2142726 2142727 rs2480708 0 - C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 601 chr1 2143302 2143303 rs140779600 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, 601 chr1 2143490 2143491 rs143314458 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 789.000000,4219.000000, 0.157548,0.842452, 601 chr1 2143634 2143635 rs72927803 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 247.000000,4761.000000, 0.049321,0.950679, 601 chr1 2144106 2144107 rs2503715 0 + A A A/G genomic single unknown 0 0 untranslated-5 exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 601 chr1 2144283 2144284 rs149605413 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 84.000000,4924.000000, 0.016773,0.983227, 601 chr1 2145090 2145091 rs445779 0 - G G C/T genomic single by-frequency 0.4838 0.08853 near-gene-5 exact 1 NonIntegerChromCount 1 SC_JCM, 2 C,T, 108.559998,75.440002, 0.590000,0.410000, maf-5-some-pop,maf-5-all-pops 601 chr1 2145523 2145524 rs78281307 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 834.000000,4174.000000, 0.166534,0.833466, maf-5-some-pop,maf-5-all-pops 601 chr1 2146164 2146165 rs78265569 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 300.000000,4708.000000, 0.059904,0.940096, maf-5-some-pop 601 chr1 2146244 2146246 rs71578370 0 + TG TG -/TG genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,TG, 1655.000000,3353.000000, 0.330471,0.669529, 601 chr1 2146698 2146699 rs77699439 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 854.000000,4154.000000, 0.170527,0.829473, maf-5-some-pop,maf-5-all-pops 601 chr1 2146965 2146966 rs7512482 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1020.000000,3988.000000, 0.203674,0.796326, maf-5-some-pop,maf-5-all-pops 601 chr1 2146985 2146986 rs111481943 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 601 chr1 2147161 2147162 rs6605083 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1656.000000,3352.000000, 0.330671,0.669329, maf-5-some-pop,maf-5-all-pops 601 chr1 2147442 2147443 rs12047666 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4137.000000,871.000000, 0.826078,0.173922, maf-5-some-pop,maf-5-all-pops 601 chr1 2147873 2147874 rs10910028 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4414.000000,594.000000, 0.881390,0.118610, maf-5-some-pop,maf-5-all-pops 601 chr1 2148076 2148077 rs262697 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,KWOK,SC_JCM, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, 601 chr1 2148657 2148658 rs59790393 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 601 chr1 2149103 2149104 rs6656302 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCM_SSAHASNP,EVA-GONL, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 601 chr1 2149137 2149138 rs6656309 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3446.000000,1562.000000, 0.688099,0.311901, 601 chr1 2149291 2149292 rs2503716 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3769.000000,1239.000000, 0.752596,0.247404, 601 chr1 2149681 2149682 rs67385126 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,T, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop 601 chr1 2149695 2149696 rs144896961 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 601 chr1 2149808 2149809 rs191408952 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, 601 chr1 2150003 2150004 rs112826639 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 601 chr1 2150106 2150107 rs115961759 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4955.000000,53.000000, 0.989417,0.010583, 601 chr1 2151290 2151295 rs148830117 0 + AAAAC AAAAC -/AAAAC genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AAAAC, 1556.000000,3452.000000, 0.310703,0.689297, 601 chr1 2151578 2151579 rs12060249 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1556.000000,3452.000000, 0.310703,0.689297, 601 chr1 2151806 2151807 rs12049002 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1401.000000,3607.000000, 0.279752,0.720248, 601 chr1 2151913 2151914 rs569054456 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 799.000000,4209.000000, 0.159545,0.840455, 601 chr1 2153047 2153048 rs55845109 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4343.000000,665.000000, 0.867212,0.132788, maf-5-some-pop,maf-5-all-pops 601 chr1 2153083 2153084 rs9661611 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1000.000000,4008.000000, 0.199681,0.800319, maf-5-some-pop,maf-5-all-pops 601 chr1 2153573 2153574 rs36097958 0 - C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 601 chr1 2153630 2153631 rs186123924 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4948.000000,60.000000, 0.988019,0.011981, 601 chr1 2153694 2153695 rs74813688 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,EVA-GONL, 2 C,T, 995.000000,4013.000000, 0.198682,0.801318, 601 chr1 2153696 2153697 rs74474329 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,EVA-GONL, 2 C,T, 995.000000,4013.000000, 0.198682,0.801318, 601 chr1 2153769 2153770 rs563457699 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4948.000000,60.000000, 0.988019,0.011981, 601 chr1 2153771 2153772 rs573871888 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 601 chr1 2153929 2153930 rs183072420 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 344.000000,4664.000000, 0.068690,0.931310, 601 chr1 2153934 2153935 rs188060308 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 347.000000,4661.000000, 0.069289,0.930711, 601 chr1 2155233 2155234 rs114459642 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 601 chr1 2155861 2155862 rs57497799 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 457.000000,4551.000000, 0.091254,0.908746, maf-5-some-pop,maf-5-all-pops 601 chr1 2156691 2156700 rs143481097 0 + ACCAGAGGA ACCAGAGGA -/ACCAGAGGA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,ACCAGAGGA, 73.000000,4935.000000, 0.014577,0.985423, 601 chr1 2156998 2156999 rs2480712 0 - G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 601 chr1 2157938 2157939 rs111600357 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 996.000000,4012.000000, 0.198882,0.801118, 601 chr1 2157947 2157948 rs1692580 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2496.000000,2512.000000, 0.498403,0.501597, maf-5-some-pop,maf-5-all-pops 601 chr1 2158924 2158925 rs559204055 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4943.000000,65.000000, 0.987021,0.012979, 601 chr1 2159027 2159028 rs147401941 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 77.000000,4931.000000, 0.015375,0.984625, 601 chr1 2159634 2159634 rs574283028 0 + - - -/G genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 2 -,G, 3609.000000,1399.000000, 0.720647,0.279353, 601 chr1 2160027 2160028 rs558780686 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 996.000000,4012.000000, 0.198882,0.801118, 601 chr1 2160031 2160032 rs577809894 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 996.000000,4012.000000, 0.198882,0.801118, 601 chr1 2160389 2160390 rs28384811 0 + C C C/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EVA-GONL,EXOME_CHIP,RFINNELL, 2 C,G, 4779.000000,229.000000, 0.954273,0.045727, 601 chr1 2160498 2160499 rs115746142 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 601 chr1 2161489 2161490 rs3765930 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3991.000000,1017.000000, 0.796925,0.203075, maf-5-some-pop,maf-5-all-pops 601 chr1 2161883 2161884 rs75614142 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4942.000000,66.000000, 0.986821,0.013179, 601 chr1 2162472 2162473 rs7536233 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4279.000000,729.000000, 0.854433,0.145567, maf-5-some-pop 601 chr1 2162656 2162656 rs77234996 0 + - - -/CA genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,GMI,LUNTER,TISHKOFF, 2 -,CA, 4505.000000,503.000000, 0.899561,0.100439, 601 chr1 2162943 2162944 rs590367 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3768.000000,1240.000000, 0.752396,0.247604, maf-5-some-pop,maf-5-all-pops 601 chr1 2163006 2163007 rs10910031 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4165.000000,843.000000, 0.831669,0.168331, maf-5-some-pop,maf-5-all-pops 601 chr1 2163102 2163103 rs138776564 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 601 chr1 2164619 2164620 rs150564009 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 601 chr1 2164698 2164699 rs377599 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3631.000000,1377.000000, 0.725040,0.274960, maf-5-some-pop,maf-5-all-pops 601 chr1 2164699 2164700 rs61417340 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 308.000000,4700.000000, 0.061502,0.938498, maf-5-some-pop,maf-5-all-pops 601 chr1 2164822 2164823 rs11577042 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4335.000000,673.000000, 0.865615,0.134385, maf-5-some-pop,maf-5-all-pops 601 chr1 2165522 2165523 rs12402203 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 530.000000,4478.000000, 0.105831,0.894169, maf-5-some-pop,maf-5-all-pops 601 chr1 2165620 2165621 rs12403265 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4505.000000,503.000000, 0.899561,0.100439, maf-5-some-pop 601 chr1 2165917 2165918 rs12061341 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop,maf-5-all-pops 601 chr1 2166405 2166406 rs61776614 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 601 chr1 2166484 2166484 rs560221037 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 3078.000000,1930.000000, 0.614617,0.385383, 601 chr1 2166566 2166567 rs190412964 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 601 chr1 2166808 2166809 rs76875252 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4167.000000,841.000000, 0.832069,0.167931, maf-5-some-pop,maf-5-all-pops 601 chr1 2167529 2167530 rs75203968 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop,maf-5-all-pops 601 chr1 2167991 2167992 rs12029145 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 601 chr1 2168358 2168359 rs72637886 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 601 chr1 2168712 2168713 rs58949163 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4395.000000,613.000000, 0.877596,0.122404, maf-5-some-pop,maf-5-all-pops 601 chr1 2169078 2169079 rs10910032 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3323.000000,1685.000000, 0.663538,0.336462, maf-5-some-pop,maf-5-all-pops 601 chr1 2169214 2169215 rs696094 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop,maf-5-all-pops 601 chr1 2169694 2169695 rs76859665 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4944.000000,64.000000, 0.987220,0.012780, 601 chr1 2169791 2169792 rs262679 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3765.000000,1243.000000, 0.751797,0.248203, maf-5-some-pop,maf-5-all-pops 601 chr1 2170059 2170060 rs12067359 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1687.000000,3321.000000, 0.336861,0.663139, maf-5-some-pop,maf-5-all-pops 601 chr1 2170471 2170472 rs56765029 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 1338.000000,3670.000000, 0.267173,0.732827, maf-5-some-pop,maf-5-all-pops 601 chr1 2171636 2171637 rs10797414 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1736.000000,3272.000000, 0.346645,0.653355, maf-5-some-pop,maf-5-all-pops 601 chr1 2171982 2171983 rs10797415 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3320.000000,1688.000000, 0.662939,0.337061, maf-5-some-pop,maf-5-all-pops 601 chr1 2172240 2172241 rs74658298 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 601 chr1 2172796 2172797 rs262677 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,KWOK,SC_JCM,TSC-CSHL, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 601 chr1 2172918 2172919 rs1692585 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,T, 1537.000000,3471.000000, 0.306909,0.693091, 601 chr1 2172987 2172988 rs263527 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3260.000000,1748.000000, 0.650958,0.349042, 601 chr1 2173056 2173059 rs561310619 0 + CTC CTC -/CTC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CTC, 57.000000,4951.000000, 0.011382,0.988618, 601 chr1 2173067 2173068 rs145522175 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 601 chr1 2173178 2173179 rs10910033 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3662.000000,1346.000000, 0.731230,0.268770, maf-5-some-pop 601 chr1 2173810 2173811 rs55781948 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,ILLUMINA, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 601 chr1 2173960 2173961 rs11803099 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,CSHL-HAPMAP,ENSEMBL, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 601 chr1 2174148 2174149 rs75482618 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 601 chr1 2174490 2174491 rs75875721 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 601 chr1 2175395 2175395 rs372786242 0 + - - -/TTTC/TTTCTTTC genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,EVA-GONL,LUNTER,SSIP, 3 -,TTTC,TTTCTTTC, 4666.000000,41.000000,301.000000, 0.931709,0.008187,0.060104, 601 chr1 2175474 2175475 rs138067987 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 68.000000,4940.000000, 0.013578,0.986422, 601 chr1 2175552 2175553 rs142451335 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4770.000000,238.000000, 0.952476,0.047524, 601 chr1 2175577 2175578 rs150121003 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1155.000000,3853.000000, 0.230631,0.769369, 601 chr1 2176037 2176038 rs10910034 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3139.000000,1869.000000, 0.626797,0.373203, maf-5-some-pop,maf-5-all-pops 601 chr1 2176125 2176126 rs11582968 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop 601 chr1 2176160 2176161 rs1713712 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SEQUENOM,SSMP,TISHKOFF, 2 C,T, 3121.000000,1887.000000, 0.623203,0.376797, maf-5-some-pop,maf-5-all-pops 601 chr1 2176201 2176202 rs72927819 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 601 chr1 2176560 2176561 rs116374150 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop,maf-5-all-pops 601 chr1 2176964 2176965 rs147298727 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 601 chr1 2177016 2177017 rs4648817 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,WI_SSAHASNP, 2 C,T, 4799.000000,209.000000, 0.958267,0.041733, 601 chr1 2177069 2177070 rs150842446 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4810.000000,198.000000, 0.960463,0.039537, 601 chr1 2177103 2177103 rs142110763 0 + - - -/G genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 4663.000000,345.000000, 0.931110,0.068890, 601 chr1 2177161 2177162 rs11580750 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop,maf-5-all-pops 601 chr1 2177378 2177379 rs263534 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,KWOK,SC_JCM,SEQUENOM, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 601 chr1 2177726 2177727 rs263535 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1749.000000,3259.000000, 0.349241,0.650759, maf-5-some-pop,maf-5-all-pops 601 chr1 2178294 2178294 rs548738790 0 + - - -/G genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,G, 3266.000000,1742.000000, 0.652157,0.347843, 601 chr1 2178754 2178761 rs141413051 0 + GCCCTCA GCCCTCA -/GCCCTCA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GCCCTCA, 676.000000,4332.000000, 0.134984,0.865016, 601 chr1 2178796 2178797 rs2132594 0 - G G C/G genomic single by-frequency,by-hapmap 0.02924 0.117324 intron exact 1 1 TSC-CSHL, 2 C,G, 863.000000,13.000000, 0.985160,0.014840, maf-5-some-pop 601 chr1 2178998 2178999 rs4648818 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3320.000000,1688.000000, 0.662939,0.337061, maf-5-some-pop,maf-5-all-pops 601 chr1 2179994 2179995 rs116620201 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 601 chr1 2180296 2180297 rs149396760 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4940.000000,68.000000, 0.986422,0.013578, 601 chr1 2180626 2180627 rs75086328 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 936.000000,4072.000000, 0.186901,0.813099, maf-5-some-pop 601 chr1 2181747 2181748 rs11584896 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4728.000000,280.000000, 0.944089,0.055911, maf-5-some-pop 601 chr1 2181962 2181963 rs56054221 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4330.000000,678.000000, 0.864617,0.135383, maf-5-some-pop,maf-5-all-pops 601 chr1 2182177 2182178 rs145587603 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 601 chr1 2182341 2182342 rs10797416 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1245.000000,3763.000000, 0.248602,0.751398, maf-5-some-pop,maf-5-all-pops 601 chr1 2182469 2182470 rs260512 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3251.000000,1757.000000, 0.649161,0.350839, maf-5-some-pop,maf-5-all-pops 601 chr1 2183055 2183056 rs11581132 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 314.000000,4694.000000, 0.062700,0.937300, maf-5-some-pop 601 chr1 2184045 2184046 rs59705675 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 3249.000000,1759.000000, 0.648762,0.351238, 601 chr1 2184279 2184280 rs10910037 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1246.000000,3762.000000, 0.248802,0.751198, maf-5-some-pop,maf-5-all-pops 601 chr1 2184400 2184401 rs260511 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3263.000000,1745.000000, 0.651558,0.348442, 601 chr1 2184637 2184638 rs76154380 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 344.000000,4664.000000, 0.068690,0.931310, maf-5-some-pop,maf-5-all-pops 601 chr1 2184691 2184692 rs10910038 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1158.000000,3850.000000, 0.231230,0.768770, maf-5-some-pop 601 chr1 2184754 2184755 rs114462818 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4838.000000,170.000000, 0.966054,0.033946, 601 chr1 2184854 2184855 rs12385717 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 307.000000,4701.000000, 0.061302,0.938698, maf-5-some-pop 601 chr1 2184987 2184988 rs55642209 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4306.000000,702.000000, 0.859824,0.140176, maf-5-some-pop 601 chr1 2185309 2185310 rs77780976 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 304.000000,4704.000000, 0.060703,0.939297, maf-5-some-pop,maf-5-all-pops 601 chr1 2185399 2185400 rs12038607 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 931.000000,4077.000000, 0.185903,0.814097, maf-5-some-pop 601 chr1 2185885 2185886 rs16824947 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop 601 chr1 2186114 2186115 rs77797313 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 601 chr1 2186171 2186172 rs61329978 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, 601 chr1 2186172 2186172 rs139901487 0 + - - -/GTGT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,GTGT, 4787.000000,221.000000, 0.955871,0.044129, 601 chr1 2186219 2186220 rs16824948 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4768.000000,240.000000, 0.952077,0.047923, maf-5-some-pop 601 chr1 2186687 2186688 rs115128295 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop,maf-5-all-pops 601 chr1 2186984 2186985 rs260509 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3250.000000,1758.000000, 0.648962,0.351038, maf-5-some-pop,maf-5-all-pops 601 chr1 2187084 2187085 rs260508 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1742.000000,3266.000000, 0.347843,0.652157, maf-5-some-pop,maf-5-all-pops 601 chr1 2187910 2187911 rs7414828 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop,maf-5-all-pops 601 chr1 2187942 2187943 rs145119108 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 601 chr1 2188031 2188032 rs7546430 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop 601 chr1 2188997 2188997 rs140561111 0 + - - -/CTT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,CTT, 4945.000000,63.000000, 0.987420,0.012580, 601 chr1 2189195 2189196 rs12136830 0 + A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3317.000000,1691.000000, 0.662340,0.337660, maf-5-some-pop,maf-5-all-pops 601 chr1 2189476 2189477 rs12138597 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1692.000000,3316.000000, 0.337859,0.662141, maf-5-some-pop,maf-5-all-pops 601 chr1 2189579 2189580 rs12084736 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3869.000000,1139.000000, 0.772564,0.227436, maf-5-some-pop 601 chr1 2189895 2189899 rs148494785 0 + GTCA GTCA -/GTCA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GTCA, 58.000000,4950.000000, 0.011582,0.988419, 601 chr1 2191499 2191500 rs117890076 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 601 chr1 2191862 2191863 rs117283023 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 601 chr1 2191979 2191980 rs539528899 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSIP, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, 601 chr1 2192432 2192433 rs10797417 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3821.000000,1187.000000, 0.762979,0.237021, maf-5-some-pop 601 chr1 2192638 2192639 rs260507 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3250.000000,1758.000000, 0.648962,0.351038, maf-5-some-pop 601 chr1 2192699 2192700 rs76545052 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,MPI_MOLGEN, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, 601 chr1 2192947 2192948 rs12040414 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1636.000000,3372.000000, 0.326677,0.673323, maf-5-some-pop,maf-5-all-pops 601 chr1 2193416 2193417 rs260506 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CSHL-HAPMAP,ENSEMBL,KWOK,SC_JCM, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 601 chr1 2193645 2193646 rs80341586 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 217.000000,4791.000000, 0.043331,0.956669, 601 chr1 2193803 2193804 rs112780030 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 65.000000,4943.000000, 0.012979,0.987021, 601 chr1 2193922 2193923 rs12565796 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1686.000000,3322.000000, 0.336661,0.663339, 601 chr1 2194014 2194015 rs260505 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3253.000000,1755.000000, 0.649561,0.350439, maf-5-some-pop,maf-5-all-pops 601 chr1 2194673 2194675 rs367758982 0 + TT TT -/TT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HUMANGENOME_JCVI,PJP, 2 -,TT, 3257.000000,1751.000000, 0.650359,0.349641, 601 chr1 2194693 2194694 rs534998655 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4938.000000,70.000000, 0.986022,0.013978, 601 chr1 2195116 2195117 rs7547453 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3401.000000,1607.000000, 0.679113,0.320887, maf-5-some-pop,maf-5-all-pops 601 chr1 2195227 2195228 rs72927836 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,C, 80.000000,4928.000000, 0.015974,0.984026, 601 chr1 2195305 2195306 rs567205189 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 923.000000,4085.000000, 0.184305,0.815695, 601 chr1 2195887 2195890 rs200938384 0 + TAG TAG -/TAG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,TAG, 51.000000,4957.000000, 0.010184,0.989816, 601 chr1 2196132 2196133 rs75817708 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop,maf-5-all-pops 601 chr1 2197232 2197233 rs140988776 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4694.000000,314.000000, 0.937300,0.062700, 601 chr1 2197332 2197333 rs12407634 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,GMI,JMKIDD_LAB,SSMP, 2 C,G, 218.000000,4790.000000, 0.043530,0.956470, 601 chr1 2199056 2199057 rs11588312 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4661.000000,347.000000, 0.930711,0.069289, maf-5-some-pop 601 chr1 2199228 2199229 rs116738503 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 601 chr1 2200302 2200303 rs72927838 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, maf-5-some-pop,maf-5-all-pops 601 chr1 2200340 2200341 rs4648625 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop 601 chr1 2200389 2200390 rs4648626 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2097.000000,2911.000000, 0.418730,0.581270, maf-5-some-pop,maf-5-all-pops 601 chr1 2200403 2200404 rs4648627 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3308.000000,1700.000000, 0.660543,0.339457, maf-5-some-pop,maf-5-all-pops 601 chr1 2201743 2201744 rs77409011 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop,maf-5-all-pops 601 chr1 2202397 2202398 rs60303316 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 601 chr1 2202571 2202572 rs60635488 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop,maf-5-all-pops 601 chr1 2202773 2202774 rs6673129 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4400.000000,608.000000, 0.878594,0.121406, maf-5-some-pop 601 chr1 2203489 2203490 rs4648628 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop,maf-5-all-pops 601 chr1 2204234 2204235 rs141682904 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, 601 chr1 2205310 2205311 rs116737062 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 601 chr1 2205358 2205359 rs75002530 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,MPI_MOLGEN, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 601 chr1 2205526 2205527 rs10910045 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1313.000000,3695.000000, 0.262181,0.737819, maf-5-some-pop 601 chr1 2205547 2205548 rs12047069 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1273.000000,3735.000000, 0.254193,0.745807, maf-5-some-pop,maf-5-all-pops 601 chr1 2205580 2205581 rs12045693 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2297.000000,2711.000000, 0.458666,0.541334, maf-5-some-pop,maf-5-all-pops,microattr-tpa 601 chr1 2205763 2205764 rs57755752 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 601 chr1 2206384 2206385 rs72642130 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4761.000000,247.000000, 0.950679,0.049321, maf-5-some-pop,maf-5-all-pops 601 chr1 2206443 2206444 rs10797418 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3254.000000,1754.000000, 0.649760,0.350240, maf-5-some-pop,maf-5-all-pops 601 chr1 2206719 2206720 rs78598687 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 601 chr1 2207512 2207513 rs12021799 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SC_SNP,SSMP, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 601 chr1 2208122 2208123 rs11590235 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, 601 chr1 2208750 2208751 rs12725264 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,C, 4388.000000,620.000000, 0.876198,0.123802, 601 chr1 2208907 2208908 rs115236209 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 282.000000,4726.000000, 0.056310,0.943690, maf-5-some-pop,maf-5-all-pops 601 chr1 2210216 2210217 rs116423318 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, 601 chr1 2210767 2210768 rs79942186 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 305.000000,4703.000000, 0.060903,0.939097, maf-5-some-pop,maf-5-all-pops 601 chr1 2211643 2211644 rs12562901 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,T, 1326.000000,3682.000000, 0.264776,0.735224, 601 chr1 2211729 2211730 rs113458259 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 601 chr1 2211814 2211814 rs374895709 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,A, 3961.000000,1047.000000, 0.790935,0.209065, 601 chr1 2211848 2211849 rs10910047 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1842.000000,3166.000000, 0.367812,0.632188, maf-5-some-pop,maf-5-all-pops 601 chr1 2211943 2211944 rs10910048 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1831.000000,3177.000000, 0.365615,0.634385, maf-5-some-pop,maf-5-all-pops 601 chr1 2212288 2212289 rs60627793 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,HGSV,SSMP, 2 A,C, 2835.000000,2173.000000, 0.566094,0.433906, 601 chr1 2212346 2212347 rs546307974 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4196.000000,812.000000, 0.837859,0.162141, 601 chr1 2212350 2212351 rs556368758 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4196.000000,812.000000, 0.837859,0.162141, 601 chr1 2212352 2212353 rs575438533 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 812.000000,4196.000000, 0.162141,0.837859, 601 chr1 2212353 2212354 rs544419080 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 812.000000,4196.000000, 0.162141,0.837859, 601 chr1 2212530 2212531 rs74832092 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,SSMP, 2 A,G, 3.000000,117.000000, 0.025000,0.975000, 601 chr1 2212864 2212884 rs577332839 0 + GGATGCCCGAGAAGACAGGC GGATGCCCGAGAAGACAGGC -/GGATGCCCGAGAAGACAGGC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GGATGCCCGAGAAGACAGGC, 4895.000000,113.000000, 0.977436,0.022564, 601 chr1 2213466 2213467 rs540246122 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 3013.000000,1995.000000, 0.601637,0.398363, 601 chr1 2213470 2213471 rs560160874 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 3013.000000,1995.000000, 0.601637,0.398363, 601 chr1 2213472 2213473 rs531988357 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 1995.000000,3013.000000, 0.398363,0.601637, 601 chr1 2213473 2213474 rs552282657 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 1995.000000,3013.000000, 0.398363,0.601637, 601 chr1 2213769 2213769 rs534664010 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 4805.000000,203.000000, 0.959465,0.040535, 601 chr1 2213960 2213961 rs12057498 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,SC_SNP,SSMP, 2 A,G, 2455.000000,2553.000000, 0.490216,0.509784, maf-5-some-pop,maf-5-all-pops 601 chr1 2214050 2214051 rs138516510 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 601 chr1 2214201 2214202 rs117498656 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 601 chr1 2214430 2214431 rs6677807 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 C,T, 2952.000000,2056.000000, 0.589457,0.410543, maf-5-some-pop,maf-5-all-pops 601 chr1 2214452 2214453 rs77026071 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,BUSHMAN,EVA-GONL,MPI_MOLGEN,SSMP,TISHKOFF, 2 A,G, 4332.000000,676.000000, 0.865016,0.134984, maf-5-some-pop,maf-5-all-pops 601 chr1 2214574 2214575 rs76401111 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 601 chr1 2214586 2214587 rs6668309 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop 601 chr1 2214742 2214743 rs6678142 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2574.000000,2434.000000, 0.513978,0.486022, maf-5-some-pop,maf-5-all-pops 601 chr1 2214812 2214813 rs6682916 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1205.000000,3803.000000, 0.240615,0.759385, maf-5-some-pop,maf-5-all-pops 601 chr1 2214921 2214922 rs72927848 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop,maf-5-all-pops 601 chr1 2215085 2215086 rs542852608 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,C, 107.000000,4901.000000, 0.021366,0.978634, 601 chr1 2215120 2215121 rs6678490 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4223.000000,785.000000, 0.843251,0.156749, maf-5-some-pop,maf-5-all-pops 601 chr1 2215210 2215211 rs6686375 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3441.000000,1567.000000, 0.687101,0.312899, maf-5-some-pop,maf-5-all-pops 601 chr1 2215308 2215309 rs56905289 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4660.000000,348.000000, 0.930511,0.069489, maf-5-some-pop,maf-5-all-pops 601 chr1 2215341 2215342 rs115110066 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 601 chr1 2215508 2215509 rs114990167 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 601 chr1 2215590 2215591 rs58599509 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB, 2 C,T, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop,maf-5-all-pops 601 chr1 2215650 2215651 rs2645078 0 - C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 601 chr1 2215912 2215913 rs75187898 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop 601 chr1 2215977 2215978 rs72927851 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF, 2 C,G, 411.000000,4597.000000, 0.082069,0.917931, maf-5-some-pop,maf-5-all-pops 601 chr1 2216022 2216023 rs60491613 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 601 chr1 2216355 2216356 rs12061705 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,SC_SNP,TISHKOFF, 2 A,G, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 601 chr1 2216367 2216368 rs4648821 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2375.000000,2633.000000, 0.474241,0.525759, maf-5-some-pop,maf-5-all-pops 601 chr1 2216390 2216391 rs6689315 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3679.000000,1329.000000, 0.734625,0.265375, maf-5-some-pop,maf-5-all-pops 601 chr1 2216705 2216706 rs2971436 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,SC_JCM,SC_SNP, 2 C,G, 4865.000000,143.000000, 0.971446,0.028554, 601 chr1 2216885 2216886 rs181552643 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 601 chr1 2216925 2216926 rs141239634 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4840.000000,168.000000, 0.966454,0.033546, 601 chr1 2216954 2216954 rs200993485 0 + - - -/A genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,A, 4683.000000,325.000000, 0.935104,0.064896, 601 chr1 2217011 2217011 rs564608334 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 3979.000000,1029.000000, 0.794529,0.205471, 601 chr1 2217064 2217065 rs61759158 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 732.000000,4276.000000, 0.146166,0.853834, 601 chr1 2217195 2217196 rs115279459 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop,maf-5-all-pops 601 chr1 2217385 2217386 rs12353976 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,TISHKOFF, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 601 chr1 2217414 2217415 rs189788340 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, 601 chr1 2218099 2218100 rs12119470 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4404.000000,604.000000, 0.879393,0.120607, maf-5-some-pop,maf-5-all-pops 601 chr1 2218128 2218129 rs59476564 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 688.000000,4320.000000, 0.137380,0.862620, maf-5-some-pop,maf-5-all-pops 601 chr1 2218264 2218265 rs57176637 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop,maf-5-all-pops 601 chr1 2218645 2218646 rs55661542 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 601 chr1 2218777 2218777 rs112900405 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BUSHMAN, 2 -,T, 2337.000000,2671.000000, 0.466653,0.533347, 601 chr1 2218827 2218828 rs10910049 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 6.000000,4.000000, 0.600000,0.400000, 601 chr1 2218936 2218937 rs58212916 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 A,G, 4473.000000,535.000000, 0.893171,0.106829, 601 chr1 2218964 2218965 rs6691983 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3591.000000,1417.000000, 0.717053,0.282947, 601 chr1 2218967 2218968 rs6682474 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1383.000000,3625.000000, 0.276158,0.723842, 601 chr1 2219314 2219315 rs61759159 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop,maf-5-all-pops 601 chr1 2219321 2219322 rs60794267 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 C,G, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 601 chr1 2219612 2219613 rs1971304 0 + A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4220.000000,788.000000, 0.842652,0.157348, 601 chr1 2219645 2219646 rs149008990 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 601 chr1 2219879 2219880 rs17372827 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN, 2 A,C, 4885.000000,123.000000, 0.975439,0.024561, 601 chr1 2220069 2220070 rs4648823 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,T, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop 601 chr1 2220390 2220391 rs13374344 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4685.000000,323.000000, 0.935503,0.064497, maf-5-some-pop,maf-5-all-pops 601 chr1 2220424 2220425 rs2643884 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3770.000000,1238.000000, 0.752796,0.247204, maf-5-some-pop,maf-5-all-pops 601 chr1 2220516 2220517 rs1039065 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2346.000000,2662.000000, 0.468450,0.531550, maf-5-some-pop,maf-5-all-pops 601 chr1 2221107 2221108 rs115294334 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 601 chr1 2221131 2221132 rs114333584 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 601 chr1 2221221 2221222 rs2643885 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3606.000000,1402.000000, 0.720048,0.279952, maf-5-some-pop 601 chr1 2221635 2221636 rs903922 0 - A A A/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SC_JCM,SC_SNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 601 chr1 2221837 2221838 rs878093 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 561.000000,4447.000000, 0.112021,0.887979, maf-5-some-pop,maf-5-all-pops 601 chr1 2222012 2222012 rs113561641 0 + - - -/G genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,G, 4905.000000,103.000000, 0.979433,0.020567, 601 chr1 2222176 2222177 rs72643474 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 939.000000,4069.000000, 0.187500,0.812500, maf-5-some-pop,maf-5-all-pops 601 chr1 2222367 2222368 rs12731820 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1643.000000,3365.000000, 0.328075,0.671925, maf-5-some-pop,maf-5-all-pops 601 chr1 2223052 2223054 rs34433967 0 + CT CT -/CT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,LUNTER,PJP,SSMP, 2 -,CT, 2292.000000,2716.000000, 0.457668,0.542332, 601 chr1 2223144 2223145 rs5772064 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 9 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,G, 4356.000000,652.000000, 0.869808,0.130192, 601 chr1 2223801 2223802 rs147422954 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 601 chr1 2224226 2224227 rs76195128 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 601 chr1 2224281 2224282 rs903617 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 648.000000,4360.000000, 0.129393,0.870607, maf-5-some-pop 601 chr1 2224366 2224367 rs72643475 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 G,T, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop,maf-5-all-pops 601 chr1 2224608 2224609 rs2643886 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4367.000000,641.000000, 0.872005,0.127995, maf-5-some-pop 601 chr1 2224724 2224725 rs12049182 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SC_SNP,SSMP, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop 601 chr1 2224835 2224836 rs12743493 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1988.000000,3020.000000, 0.396965,0.603035, maf-5-some-pop,maf-5-all-pops 601 chr1 2224866 2224866 rs145326512 0 + - - -/C genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BILGI_BIOE,LUNTER,SSMP,WARNICH_LAB, 2 -,C, 3071.000000,1937.000000, 0.613219,0.386781, 601 chr1 2224875 2224876 rs10910050 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 651.000000,4357.000000, 0.129992,0.870008, maf-5-some-pop 601 chr1 2225141 2225142 rs117822206 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 601 chr1 2225157 2225158 rs6702400 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 953.000000,4055.000000, 0.190296,0.809704, maf-5-some-pop,maf-5-all-pops 601 chr1 2225411 2225412 rs12024136 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 544.000000,4464.000000, 0.108626,0.891374, maf-5-some-pop 601 chr1 2225496 2225497 rs80018648 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop,maf-5-all-pops 601 chr1 2225649 2225650 rs74971327 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 601 chr1 2225944 2225945 rs77815099 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 64.000000,4944.000000, 0.012780,0.987220, maf-5-some-pop,maf-5-all-pops 601 chr1 2226158 2226159 rs140182288 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 601 chr1 2226332 2226333 rs903918 0 - T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 601 chr1 2227143 2227166 rs200597783 0 + GGCCACGTGTGGCTATGTGTCCA GGCCACGTGTGGCTATGTGTCCA -/GGCCACGTGTGGCTATGTGTCCA genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI, 2 -,GGCCACGTGTGGCTATGTGTCCA, 1858.000000,3150.000000, 0.371006,0.628994, 601 chr1 2227157 2227158 rs2643887 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,ILLUMINA-UK,SC_JCM,SC_SNP,WI_SSAHASNP, 2 A,G, 3108.000000,1900.000000, 0.620607,0.379393, 601 chr1 2227165 2227166 rs2971438 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSMP, 2 A,G, 612.000000,4396.000000, 0.122204,0.877796, 601 chr1 2227674 2227675 rs56117572 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 A,C, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop,maf-5-all-pops 601 chr1 2227891 2227892 rs116285475 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 601 chr1 2228181 2228184 rs201564304 0 + TTG TTG -/TTG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,TTG, 54.000000,4954.000000, 0.010783,0.989217, 602 chr1 2228276 2228277 rs79198340 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop,maf-5-all-pops 602 chr1 2229139 2229140 rs12562729 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4476.000000,532.000000, 0.893770,0.106230, maf-5-some-pop,maf-5-all-pops 602 chr1 2229155 2229156 rs17364349 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 4414.000000,594.000000, 0.881390,0.118610, maf-5-some-pop,maf-5-all-pops 602 chr1 2229300 2229301 rs7515207 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4188.000000,820.000000, 0.836262,0.163738, maf-5-some-pop 602 chr1 2229386 2229387 rs116162952 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop,maf-5-all-pops 602 chr1 2229446 2229447 rs2643888 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 625.000000,4383.000000, 0.124800,0.875200, maf-5-some-pop 602 chr1 2229477 2229478 rs12562937 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4086.000000,922.000000, 0.815895,0.184105, maf-5-some-pop 602 chr1 2229834 2229835 rs114586752 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 602 chr1 2229916 2229917 rs72642137 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops 602 chr1 2230482 2230483 rs374908358 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 56.000000,4952.000000, 0.011182,0.988818, 602 chr1 2230510 2230511 rs7520901 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,TISHKOFF,WI_SSAHASNP, 2 A,C, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 602 chr1 2230798 2230799 rs10797419 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1699.000000,3309.000000, 0.339257,0.660743, maf-5-some-pop,maf-5-all-pops 602 chr1 2231152 2231153 rs2001206 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,TISHKOFF,TSC-CSHL, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop 602 chr1 2231409 2231410 rs75613834 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 G,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 602 chr1 2231565 2231566 rs142505883 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 602 chr1 2231965 2231966 rs55710545 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop,maf-5-all-pops 602 chr1 2232303 2232304 rs77248184 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 602 chr1 2232525 2232526 rs113713853 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4612.000000,396.000000, 0.920927,0.079074, maf-5-some-pop 602 chr1 2232531 2232532 rs72643476 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 877.000000,4131.000000, 0.175120,0.824880, maf-5-some-pop 602 chr1 2232843 2232844 rs548744757 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSIP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 602 chr1 2233020 2233021 rs114196827 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 602 chr1 2233311 2233312 rs903618 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop 602 chr1 2233960 2233961 rs11576356 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 632.000000,4376.000000, 0.126198,0.873802, maf-5-some-pop,maf-5-all-pops 602 chr1 2234040 2234043 rs141190925 0 + AGG AGG -/AGG genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AGG, 533.000000,4475.000000, 0.106430,0.893570, 602 chr1 2234250 2234251 rs1496555 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 667.000000,4341.000000, 0.133187,0.866813, maf-5-some-pop,maf-5-all-pops 602 chr1 2234631 2234632 rs2279702 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,YUSUKE, 2 A,G, 565.000000,4443.000000, 0.112819,0.887181, maf-5-some-pop 602 chr1 2234849 2234850 rs115186522 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 602 chr1 2234902 2234903 rs2256178 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3660.000000,1348.000000, 0.730831,0.269169, maf-5-some-pop,maf-5-all-pops 602 chr1 2235018 2235019 rs4648631 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 802.000000,4206.000000, 0.160144,0.839856, maf-5-some-pop,maf-5-all-pops 602 chr1 2235226 2235227 rs531138453 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 99.000000,4909.000000, 0.019768,0.980232, 602 chr1 2235655 2235656 rs11577387 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,PJP,SSMP, 2 A,G, 493.000000,4515.000000, 0.098443,0.901558, maf-5-some-pop,maf-5-all-pops 602 chr1 2235661 2235662 rs2645073 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1455.000000,3553.000000, 0.290535,0.709465, maf-5-some-pop,maf-5-all-pops 602 chr1 2236338 2236339 rs4648825 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 713.000000,4295.000000, 0.142372,0.857628, maf-5-some-pop,maf-5-all-pops 602 chr1 2236358 2236359 rs60363208 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 986.000000,4022.000000, 0.196885,0.803115, maf-5-some-pop,maf-5-all-pops 602 chr1 2236696 2236697 rs2643904 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 552.000000,4456.000000, 0.110224,0.889776, maf-5-some-pop 602 chr1 2236701 2236702 rs115346280 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 602 chr1 2236757 2236758 rs2843158 0 - G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 602 chr1 2236894 2236894 rs144625595 0 + - - -/C genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,C, 4909.000000,99.000000, 0.980232,0.019768, 602 chr1 2236919 2236920 rs77597281 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 C,G, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 602 chr1 2237019 2237020 rs58351713 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK, 2 G,T, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 602 chr1 2237151 2237152 rs75635289 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop 602 chr1 2237247 2237248 rs11580302 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 4102.000000,906.000000, 0.819089,0.180911, maf-5-some-pop,maf-5-all-pops 602 chr1 2237862 2237863 rs57825631 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,HGSV, 2 C,G, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 602 chr1 2238236 2238237 rs2230008 0 + A A A/T genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,WICVAR, 2 A,T, 4615.000000,393.000000, 0.921526,0.078474, maf-5-some-pop,maf-5-all-pops 602 chr1 2238895 2238896 rs74600869 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 602 chr1 2240005 2240006 rs2173049 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 26 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4057.000000,951.000000, 0.810104,0.189896, maf-5-some-pop,maf-5-all-pops 602 chr1 2240453 2240454 rs78207415 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 602 chr1 2240505 2240506 rs117433242 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 602 chr1 2240600 2240601 rs112501347 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 602 chr1 2241343 2241344 rs112043297 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 602 chr1 2241373 2241375 rs536885069 0 + GA GA -/GA genomic deletion unknown 0 0 untranslated-3 range 1 1 1000GENOMES, 2 -,GA, 103.000000,4905.000000, 0.020567,0.979433, 602 chr1 2241375 2241376 rs576736598 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 1 1000GENOMES, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, 602 chr1 2242034 2242035 rs76314859 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,BL,EVA-GONL,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 602 chr1 2242249 2242251 rs74911766 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,AG, 537.000000,4471.000000, 0.107228,0.892772, 602 chr1 2242297 2242298 rs146894003 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,MPI_MOLGEN, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 602 chr1 2242476 2242477 rs111693303 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop,maf-5-all-pops 602 chr1 2242917 2242918 rs75398133 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 602 chr1 2243120 2243121 rs61762077 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop 602 chr1 2244282 2244283 rs143369305 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 602 chr1 2244767 2244768 rs148845384 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4943.000000,65.000000, 0.987021,0.012979, 602 chr1 2245569 2245570 rs2843152 0 - C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 602 chr1 2245700 2245701 rs112472001 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 602 chr1 2246060 2246061 rs61762078 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA, 2 G,T, 4780.000000,228.000000, 0.954473,0.045527, 602 chr1 2246076 2246077 rs564504952 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,G, 53.000000,4955.000000, 0.010583,0.989417, 602 chr1 2246286 2246287 rs959528 0 - G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,EVA-GONL,HGSV,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 602 chr1 2246512 2246513 rs61762079 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,SSMP, 2 A,G, 2002.000000,3006.000000, 0.399760,0.600240, 602 chr1 2247072 2247073 rs114999064 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, 602 chr1 2247486 2247487 rs2645076 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1758.000000,3250.000000, 0.351038,0.648962, maf-5-some-pop,maf-5-all-pops 602 chr1 2247644 2247645 rs114853620 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop,maf-5-all-pops 602 chr1 2247984 2247985 rs2643905 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3211.000000,1797.000000, 0.641174,0.358826, maf-5-some-pop,maf-5-all-pops 602 chr1 2248057 2248058 rs61762080 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop,maf-5-all-pops 602 chr1 2248573 2248574 rs536934620 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 189.000000,4819.000000, 0.037740,0.962260, 602 chr1 2248578 2248579 rs80040149 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4944.000000,64.000000, 0.987220,0.012780, 602 chr1 2248623 2248624 rs12035836 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4330.000000,678.000000, 0.864617,0.135383, maf-5-some-pop 602 chr1 2249235 2249236 rs2645077 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3211.000000,1797.000000, 0.641174,0.358826, maf-5-some-pop,maf-5-all-pops 602 chr1 2249810 2249811 rs114281084 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 602 chr1 2250361 2250362 rs16825030 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,PERLEGEN, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop 602 chr1 2250616 2250617 rs61746618 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,CORNELL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop 602 chr1 2250694 2250695 rs138254640 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 602 chr1 2250908 2250909 rs112460417 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 602 chr1 2251118 2251119 rs12081179 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3228.000000,1780.000000, 0.644569,0.355431, maf-5-some-pop,maf-5-all-pops 602 chr1 2251145 2251146 rs115215843 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 602 chr1 2251159 2251160 rs12082516 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1800.000000,3208.000000, 0.359425,0.640575, maf-5-some-pop,maf-5-all-pops 602 chr1 2251347 2251348 rs74046969 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1786.000000,3222.000000, 0.356629,0.643371, maf-5-some-pop,maf-5-all-pops 602 chr1 2251356 2251357 rs12080256 0 + C C A/C genomic single unknown 0 0 near-gene-3 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1998.000000,3010.000000, 0.398962,0.601038, maf-5-some-pop,maf-5-all-pops 602 chr1 2251821 2251822 rs74554258 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, 602 chr1 2251946 2251947 rs2643907 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 781.000000,4227.000000, 0.155950,0.844050, maf-5-some-pop,maf-5-all-pops 602 chr1 2251981 2251982 rs11806567 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3353.000000,1655.000000, 0.669529,0.330471, maf-5-some-pop,maf-5-all-pops 602 chr1 2252190 2252191 rs72920928 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3356.000000,1652.000000, 0.670128,0.329872, maf-5-some-pop,maf-5-all-pops 602 chr1 2252279 2252280 rs12406976 0 + C C C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 6 1000GENOMES,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4547.000000,461.000000, 0.907947,0.092053, maf-5-some-pop 602 chr1 2252625 2252626 rs140397680 0 + A A A/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 4938.000000,70.000000, 0.986022,0.013978, 602 chr1 2253326 2253327 rs2279677 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 602 chr1 2254508 2254509 rs61762082 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4271.000000,737.000000, 0.852835,0.147165, maf-5-some-pop 602 chr1 2254557 2254558 rs115750325 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 602 chr1 2254633 2254634 rs114072613 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 602 chr1 2254701 2254702 rs113025570 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop,maf-5-all-pops 602 chr1 2254710 2254711 rs75453348 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 602 chr1 2254967 2254968 rs113168075 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 602 chr1 2255103 2255104 rs61762083 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 602 chr1 2255306 2255307 rs76962161 0 + C C A/C genomic single unknown 0 0 intron,ncRNA exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,C, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 602 chr1 2255358 2255359 rs79333251 0 + C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4950.000000,58.000000, 0.988419,0.011582, 602 chr1 2255489 2255493 rs143047313 0 + CAGA CAGA -/CAGA genomic deletion unknown 0 0 intron,ncRNA range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,CAGA, 146.000000,4862.000000, 0.029153,0.970847, 602 chr1 2255568 2255569 rs61729821 0 + C C C/T genomic single unknown 0 0 ncRNA,missense exact 1 7 1000GENOMES,CORNELL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 602 chr1 2255632 2255633 rs3737639 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1105.000000,3903.000000, 0.220647,0.779353, maf-5-some-pop 602 chr1 2256244 2256245 rs2843148 0 - A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 602 chr1 2256287 2256288 rs76805690 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 817.000000,4191.000000, 0.163139,0.836861, maf-5-some-pop 602 chr1 2256289 2256290 rs115526621 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 602 chr1 2256307 2256308 rs150944166 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 59.000000,4949.000000, 0.011781,0.988219, 602 chr1 2256416 2256416 rs140783051 0 + - - -/GCT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BL,GMI,LUNTER, 2 -,GCT, 1001.000000,4007.000000, 0.199880,0.800120, 602 chr1 2256459 2256460 rs61762084 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 602 chr1 2256470 2256471 rs72642143 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop 602 chr1 2256539 2256540 rs116485075 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 602 chr1 2256634 2256637 rs201113917 0 + CTT CTT -/CTT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CTT, 141.000000,4867.000000, 0.028155,0.971845, 602 chr1 2256726 2256726 rs59175712 0 + - - -/CT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,GMI,LUNTER, 2 -,CT, 2292.000000,2716.000000, 0.457668,0.542332, 602 chr1 2256824 2256825 rs115683642 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 602 chr1 2256932 2256933 rs72642144 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1532.000000,3476.000000, 0.305911,0.694089, maf-5-some-pop,maf-5-all-pops 602 chr1 2257017 2257018 rs72642145 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 794.000000,4214.000000, 0.158546,0.841454, maf-5-some-pop 602 chr1 2257081 2257084 rs529341445 0 + TTT TTT -/TTT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TTT, 3775.000000,1233.000000, 0.753794,0.246206, 602 chr1 2257352 2257353 rs12566205 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4694.000000,314.000000, 0.937300,0.062700, maf-5-some-pop 602 chr1 2257490 2257491 rs2643892 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3665.000000,1343.000000, 0.731829,0.268171, maf-5-some-pop,maf-5-all-pops 602 chr1 2257694 2257695 rs10910051 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1536.000000,3472.000000, 0.306709,0.693291, maf-5-some-pop,maf-5-all-pops 602 chr1 2257726 2257727 rs2643893 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop,maf-5-all-pops 602 chr1 2257862 2257863 rs2645092 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1092.000000,3916.000000, 0.218051,0.781949, maf-5-some-pop,maf-5-all-pops 602 chr1 2257885 2257886 rs72642149 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 780.000000,4228.000000, 0.155751,0.844249, maf-5-some-pop,maf-5-all-pops 602 chr1 2257930 2257931 rs2645093 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1253.000000,3755.000000, 0.250200,0.749800, maf-5-some-pop 602 chr1 2258322 2258323 rs2643894 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1140.000000,3868.000000, 0.227636,0.772364, maf-5-some-pop,maf-5-all-pops 602 chr1 2258472 2258473 rs2643895 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSAHASNP,SSMP, 2 A,G, 3982.000000,1026.000000, 0.795128,0.204872, maf-5-some-pop 602 chr1 2258499 2258500 rs113792968 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 602 chr1 2258526 2258536 rs534557344 0 + ACACAGAAAC ACACAGAAAC -/ACACAGAAAC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,ACACAGAAAC, 82.000000,4926.000000, 0.016374,0.983626, 602 chr1 2258590 2258590 rs149761185 0 + - - -/AC/ACAC genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BILGI_BIOE,LUNTER, 3 -,AC,ACAC, 1040.000000,1.000000,3967.000000, 0.207667,0.000200,0.792133, 602 chr1 2258602 2258603 rs186960192 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4827.000000,181.000000, 0.963858,0.036142, 602 chr1 2258626 2258628 rs144331124 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BILGI_BIOE,LUNTER,SSMP, 2 -,AG, 798.000000,4210.000000, 0.159345,0.840655, 602 chr1 2258889 2258890 rs6686269 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,SSMP, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 602 chr1 2258940 2258940 rs562284940 0 + - - -/AAACACA genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AAACACA, 3597.000000,1411.000000, 0.718251,0.281749, 602 chr1 2259318 2259319 rs78617234 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 602 chr1 2259859 2259860 rs57600853 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK, 2 A,C, 76.000000,4932.000000, 0.015176,0.984824, 602 chr1 2260025 2260026 rs72642152 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4231.000000,777.000000, 0.844848,0.155152, maf-5-some-pop 602 chr1 2260049 2260050 rs2645063 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1291.000000,3717.000000, 0.257788,0.742212, maf-5-some-pop,maf-5-all-pops 602 chr1 2260544 2260545 rs2645064 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2269.000000,2739.000000, 0.453075,0.546925, maf-5-some-pop,maf-5-all-pops 602 chr1 2260562 2260563 rs11808208 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop 602 chr1 2261002 2261003 rs7525332 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,T, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,maf-5-all-pops 602 chr1 2261221 2261222 rs2645065 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,C, 470.000000,4538.000000, 0.093850,0.906150, maf-5-some-pop 602 chr1 2261461 2261462 rs61762085 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,maf-5-all-pops 602 chr1 2261606 2261607 rs61762086 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,maf-5-all-pops 602 chr1 2261982 2261983 rs75379543 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop 602 chr1 2262164 2262165 rs113341642 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 602 chr1 2262663 2262664 rs116579103 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop,maf-5-all-pops 602 chr1 2262982 2262983 rs374317897 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 602 chr1 2263248 2263249 rs116077324 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 602 chr1 2263280 2263281 rs567100294 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 602 chr1 2263282 2263283 rs12758880 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,G, 1594.000000,3414.000000, 0.318291,0.681709, 602 chr1 2263421 2263422 rs189940475 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 3927.000000,1081.000000, 0.784145,0.215855, 602 chr1 2263437 2263438 rs2643896 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4545.000000,463.000000, 0.907548,0.092452, maf-5-some-pop,maf-5-all-pops 602 chr1 2263665 2263666 rs75273719 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 809.000000,4199.000000, 0.161542,0.838458, maf-5-some-pop,maf-5-all-pops 602 chr1 2263763 2263764 rs77681606 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 602 chr1 2264247 2264248 rs113340687 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 602 chr1 2264696 2264697 rs1809821 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4226.000000,782.000000, 0.843850,0.156150, maf-5-some-pop,maf-5-all-pops 602 chr1 2265069 2265070 rs80107522 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 908.000000,4100.000000, 0.181310,0.818690, maf-5-some-pop,maf-5-all-pops 602 chr1 2265098 2265099 rs2643897 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4634.000000,374.000000, 0.925319,0.074680, maf-5-some-pop 602 chr1 2265175 2265176 rs2645067 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4062.000000,946.000000, 0.811102,0.188898, maf-5-some-pop 602 chr1 2265218 2265219 rs2643898 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3706.000000,1302.000000, 0.740016,0.259984, maf-5-some-pop,maf-5-all-pops 602 chr1 2265338 2265351 rs139357410 0 + GCTGGAAAGAACA GCTGGAAAGAACA -/GCTGGAAAGAACA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BL,LUNTER, 2 -,GCTGGAAAGAACA, 747.000000,4261.000000, 0.149161,0.850839, 602 chr1 2265376 2265377 rs10218501 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, maf-5-some-pop,maf-5-all-pops 602 chr1 2265529 2265530 rs115800097 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 602 chr1 2265793 2265794 rs7546567 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1494.000000,3514.000000, 0.298323,0.701677, maf-5-some-pop,maf-5-all-pops 602 chr1 2266077 2266078 rs2643899 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3318.000000,1690.000000, 0.662540,0.337460, maf-5-some-pop,maf-5-all-pops 602 chr1 2266120 2266121 rs61762088 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 602 chr1 2266230 2266231 rs74351101 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 602 chr1 2266311 2266312 rs72920948 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 602 chr1 2266349 2266350 rs113792782 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,maf-5-all-pops 602 chr1 2266455 2266456 rs112133352 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 4865.000000,143.000000, 0.971446,0.028554, maf-5-some-pop,maf-5-all-pops 602 chr1 2266713 2266714 rs2643900 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 857.000000,4151.000000, 0.171126,0.828874, maf-5-some-pop,maf-5-all-pops 602 chr1 2266724 2266725 rs2645068 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 798.000000,4210.000000, 0.159345,0.840655, maf-5-some-pop,maf-5-all-pops 602 chr1 2266765 2266766 rs114580369 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 602 chr1 2266806 2266807 rs10910052 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3955.000000,1053.000000, 0.789736,0.210264, maf-5-some-pop,maf-5-all-pops 602 chr1 2266932 2266933 rs903905 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3515.000000,1493.000000, 0.701877,0.298123, maf-5-some-pop,maf-5-all-pops 602 chr1 2267122 2267123 rs112858428 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 602 chr1 2267267 2267272 rs550695611 0 + AGCCC AGCCC -/AGCCC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AGCCC, 106.000000,4902.000000, 0.021166,0.978834, 602 chr1 2267556 2267557 rs12044954 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,GMI,SC_SNP,SSMP,TISHKOFF, 2 C,T, 371.000000,4637.000000, 0.074082,0.925919, maf-5-some-pop,maf-5-all-pops 602 chr1 2267662 2267663 rs7552771 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,TISHKOFF,WI_SSAHASNP, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 602 chr1 2268039 2268040 rs78290236 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP,TISHKOFF, 2 A,T, 81.000000,4927.000000, 0.016174,0.983826, 602 chr1 2268569 2268570 rs12091632 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2473.000000,2535.000000, 0.493810,0.506190, maf-5-some-pop,maf-5-all-pops 602 chr1 2268579 2268580 rs12085675 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2411.000000,2597.000000, 0.481430,0.518570, maf-5-some-pop,maf-5-all-pops 602 chr1 2268649 2268650 rs28394874 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2665.000000,2343.000000, 0.532149,0.467851, maf-5-some-pop,maf-5-all-pops 602 chr1 2268677 2268678 rs2645069 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,SC_JCM,SSMP, 2 C,T, 4225.000000,783.000000, 0.843650,0.156350, maf-5-some-pop 602 chr1 2268737 2268738 rs2645070 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1717.000000,3291.000000, 0.342851,0.657149, maf-5-some-pop,maf-5-all-pops 602 chr1 2269670 2269671 rs60634415 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,C, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop,maf-5-all-pops 602 chr1 2269880 2269881 rs2036084 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4422.000000,586.000000, 0.882987,0.117013, maf-5-some-pop,maf-5-all-pops 602 chr1 2269898 2269899 rs2036085 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2346.000000,2662.000000, 0.468450,0.531550, maf-5-some-pop,maf-5-all-pops 602 chr1 2270008 2270009 rs12734736 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2758.000000,2250.000000, 0.550719,0.449281, maf-5-some-pop,maf-5-all-pops 602 chr1 2270158 2270159 rs61762091 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 602 chr1 2270169 2270170 rs56298931 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,ILLUMINA, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 602 chr1 2270734 2270735 rs77340980 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4564.000000,444.000000, 0.911342,0.088658, maf-5-some-pop 602 chr1 2271673 2271674 rs12757417 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 989.000000,4019.000000, 0.197484,0.802516, maf-5-some-pop,maf-5-all-pops 602 chr1 2271705 2271706 rs2645071 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 548.000000,4460.000000, 0.109425,0.890575, maf-5-some-pop 602 chr1 2272002 2272003 rs12730276 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop,maf-5-all-pops 602 chr1 2272063 2272064 rs12730391 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop,maf-5-all-pops 602 chr1 2272225 2272226 rs1472318 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3652.000000,1356.000000, 0.729233,0.270767, maf-5-some-pop,maf-5-all-pops 602 chr1 2272245 2272246 rs12730719 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 840.000000,4168.000000, 0.167732,0.832268, maf-5-some-pop,maf-5-all-pops 602 chr1 2272793 2272794 rs372532545 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,LUNTER, 2 -,C, 104.000000,4904.000000, 0.020767,0.979233, 602 chr1 2272797 2272798 rs535134147 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 104.000000,4904.000000, 0.020767,0.979233, 602 chr1 2273143 2273144 rs12730050 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,BL,EVA-GONL,GMI,HGSV,ILLUMINA,SSAHASNP, 2 A,G, 2251.000000,2757.000000, 0.449481,0.550519, 602 chr1 2273566 2273567 rs76961719 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop,maf-5-all-pops 602 chr1 2273571 2273572 rs77880816 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop,maf-5-all-pops 602 chr1 2273575 2273576 rs75504095 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop,maf-5-all-pops 602 chr1 2273668 2273669 rs75468915 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop,maf-5-all-pops 602 chr1 2273904 2273905 rs1472319 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2837.000000,2171.000000, 0.566494,0.433506, maf-5-some-pop,maf-5-all-pops 602 chr1 2274091 2274092 rs115687241 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 602 chr1 2274095 2274096 rs116190040 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4919.000000,89.000000, 0.982228,0.017772, 602 chr1 2274172 2274173 rs7542519 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,WI_SSAHASNP, 2 C,T, 884.000000,4124.000000, 0.176518,0.823482, maf-5-some-pop,maf-5-all-pops 602 chr1 2274304 2274305 rs377145629 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 A,T, 269.000000,4739.000000, 0.053714,0.946286, 602 chr1 2274305 2274306 rs369567545 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 A,T, 4739.000000,269.000000, 0.946286,0.053714, 602 chr1 2274320 2274321 rs545102621 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 125.000000,4883.000000, 0.024960,0.975040, 602 chr1 2274325 2274326 rs560524245 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 514.000000,4494.000000, 0.102636,0.897364, 602 chr1 2274437 2274438 rs61288374 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 3225.000000,1783.000000, 0.643970,0.356030, maf-5-some-pop,maf-5-all-pops 602 chr1 2274728 2274729 rs79069312 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,maf-5-all-pops 602 chr1 2274883 2274884 rs1496554 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4074.000000,934.000000, 0.813498,0.186502, maf-5-some-pop,maf-5-all-pops 602 chr1 2274955 2274956 rs4648828 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1446.000000,3562.000000, 0.288738,0.711262, maf-5-some-pop,maf-5-all-pops 602 chr1 2275137 2275138 rs4648829 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3658.000000,1350.000000, 0.730431,0.269569, maf-5-some-pop,maf-5-all-pops 602 chr1 2275244 2275245 rs78126651 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,maf-5-all-pops 602 chr1 2275375 2275376 rs4648830 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 2320.000000,2688.000000, 0.463259,0.536741, maf-5-some-pop,maf-5-all-pops 602 chr1 2275429 2275430 rs116274382 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 602 chr1 2275694 2275695 rs34901910 0 - A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 602 chr1 2275948 2275949 rs2643909 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 539.000000,4469.000000, 0.107628,0.892372, maf-5-some-pop 602 chr1 2276021 2276022 rs77981827 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 961.000000,4047.000000, 0.191893,0.808107, maf-5-some-pop,maf-5-all-pops 602 chr1 2276072 2276073 rs113406729 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 818.000000,4190.000000, 0.163339,0.836661, maf-5-some-pop,maf-5-all-pops 602 chr1 2276195 2276196 rs11589063 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,SSMP,TISHKOFF, 2 A,C, 825.000000,4183.000000, 0.164736,0.835264, maf-5-some-pop,maf-5-all-pops 602 chr1 2276287 2276288 rs115147245 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop,maf-5-all-pops 602 chr1 2276418 2276419 rs11590175 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3982.000000,1026.000000, 0.795128,0.204872, maf-5-some-pop,maf-5-all-pops 602 chr1 2276428 2276429 rs111790280 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,maf-5-all-pops 602 chr1 2276586 2276587 rs61762092 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 621.000000,4387.000000, 0.124002,0.875998, maf-5-some-pop,maf-5-all-pops 602 chr1 2276760 2276761 rs140809875 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 602 chr1 2276802 2276803 rs79827799 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop,maf-5-all-pops 602 chr1 2276880 2276881 rs72920966 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 786.000000,4222.000000, 0.156949,0.843051, maf-5-some-pop 602 chr1 2277165 2277166 rs72642160 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 813.000000,4195.000000, 0.162340,0.837660, maf-5-some-pop,maf-5-all-pops 602 chr1 2277212 2277213 rs72642161 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1020.000000,3988.000000, 0.203674,0.796326, maf-5-some-pop,maf-5-all-pops 602 chr1 2277267 2277267 rs546893536 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 4921.000000,87.000000, 0.982628,0.017372, 602 chr1 2277294 2277295 rs557681001 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 87.000000,4921.000000, 0.017372,0.982628, 602 chr1 2277391 2277392 rs72920968 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 797.000000,4211.000000, 0.159145,0.840855, maf-5-some-pop 602 chr1 2277549 2277550 rs61762093 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 3232.000000,1776.000000, 0.645367,0.354633, 602 chr1 2277670 2277671 rs114580225 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,maf-5-all-pops 602 chr1 2277705 2277706 rs56216133 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops 602 chr1 2278114 2278115 rs12409523 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 959.000000,4049.000000, 0.191494,0.808506, maf-5-some-pop,maf-5-all-pops 602 chr1 2278228 2278229 rs112254725 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,maf-5-all-pops 602 chr1 2278239 2278240 rs2132595 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2594.000000,2414.000000, 0.517971,0.482029, maf-5-some-pop,maf-5-all-pops 602 chr1 2278293 2278294 rs114893259 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,maf-5-all-pops 602 chr1 2278650 2278651 rs2173048 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4353.000000,655.000000, 0.869209,0.130791, maf-5-some-pop 602 chr1 2278980 2278981 rs2643910 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1812.000000,3196.000000, 0.361821,0.638179, maf-5-some-pop,maf-5-all-pops 602 chr1 2279119 2279120 rs116357906 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, 602 chr1 2279433 2279434 rs2643911 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4167.000000,841.000000, 0.832069,0.167931, maf-5-some-pop 602 chr1 2279562 2279563 rs114004538 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 602 chr1 2279751 2279752 rs114976947 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4928.000000,80.000000, 0.984026,0.015974, 602 chr1 2279764 2279765 rs115849474 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4926.000000,82.000000, 0.983626,0.016374, 602 chr1 2279778 2279779 rs114180985 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 602 chr1 2279816 2279817 rs56030548 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3421.000000,1587.000000, 0.683107,0.316893, maf-5-some-pop,maf-5-all-pops 602 chr1 2279831 2279832 rs61762094 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 537.000000,4471.000000, 0.107228,0.892772, maf-5-some-pop 602 chr1 2279878 2279879 rs114476429 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4927.000000,81.000000, 0.983826,0.016174, 602 chr1 2279992 2279993 rs192672688 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 602 chr1 2280028 2280029 rs55746811 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4164.000000,844.000000, 0.831470,0.168530, maf-5-some-pop 602 chr1 2280121 2280122 rs568337717 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 602 chr1 2280216 2280220 rs112331454 0 + CACA CACA -/CACA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,CACA, 126.000000,4882.000000, 0.025160,0.974840, 602 chr1 2280217 2280218 rs61330564 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 4812.000000,196.000000, 0.960863,0.039137, 602 chr1 2280247 2280248 rs541338003 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 602 chr1 2280254 2280258 rs144987376 0 + CACA CACA -/CACA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CACA, 84.000000,4924.000000, 0.016773,0.983227, 602 chr1 2280283 2280284 rs139388168 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 602 chr1 2280388 2280390 rs138445597 0 + CT CT -/CT genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,CT, 928.000000,4080.000000, 0.185304,0.814696, 602 chr1 2280422 2280423 rs2645072 0 + A A A/C genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop 602 chr1 2280621 2280622 rs7512120 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 602 chr1 2281346 2281347 rs58965274 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop,maf-5-all-pops 602 chr1 2281725 2281726 rs7527871 0 + A A A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3996.000000,1012.000000, 0.797923,0.202077, maf-5-some-pop 602 chr1 2281978 2281979 rs1039064 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,BCM_SSAHASNP,BGI,BL,EVA-GONL,GMI,ILLUMINA,SC_JCM,SC_SNP,SSMP,TSC-CSHL, 2 C,T, 946.000000,4062.000000, 0.188898,0.811102, maf-5-some-pop 602 chr1 2282134 2282135 rs10910053 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1626.000000,3382.000000, 0.324681,0.675319, maf-5-some-pop,maf-5-all-pops 602 chr1 2282189 2282200 rs147557060 0 + GGGGTGGCACG GGGGTGGCACG -/GGGGTGGCACG genomic deletion unknown 0 0 intron,ncRNA range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GGGGTGGCACG, 800.000000,4208.000000, 0.159744,0.840256, 602 chr1 2282203 2282204 rs72642165 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,BGI,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 311.000000,4697.000000, 0.062101,0.937899, 602 chr1 2282243 2282244 rs115742317 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 602 chr1 2282372 2282373 rs72642166 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4213.000000,795.000000, 0.841254,0.158746, maf-5-some-pop,maf-5-all-pops 602 chr1 2282381 2282382 rs2254895 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 13 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4088.000000,920.000000, 0.816294,0.183706, maf-5-some-pop 602 chr1 2282400 2282401 rs76142101 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4816.000000,192.000000, 0.961661,0.038339, maf-5-some-pop,maf-5-all-pops 602 chr1 2282653 2282654 rs61762095 0 + T T G/T genomic single unknown 0 0 intron,ncRNA exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 468.000000,4540.000000, 0.093451,0.906550, maf-5-some-pop,maf-5-all-pops 602 chr1 2282679 2282680 rs2279704 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3539.000000,1469.000000, 0.706669,0.293331, maf-5-some-pop,maf-5-all-pops 602 chr1 2282689 2282690 rs146894344 0 + G G C/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 C,G, 71.000000,4937.000000, 0.014177,0.985823, 602 chr1 2282775 2282776 rs2254874 0 + G G C/G genomic single unknown 0 0 intron,ncRNA exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 602 chr1 2282989 2282990 rs2036082 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4239.000000,769.000000, 0.846446,0.153554, maf-5-some-pop,maf-5-all-pops 602 chr1 2283160 2283161 rs2840525 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3355.000000,1653.000000, 0.669928,0.330072, maf-5-some-pop,maf-5-all-pops 602 chr1 2283208 2283209 rs140231198 0 + G G -/G genomic deletion unknown 0 0 intron,ncRNA exact 1 2 1000GENOMES,LUNTER, 2 -,G, 61.000000,4947.000000, 0.012180,0.987819, 602 chr1 2283265 2283266 rs2840526 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 19 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,MGC_GENOME_DIFF,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1954.000000,3054.000000, 0.390176,0.609824, maf-5-some-pop,maf-5-all-pops 602 chr1 2283312 2283313 rs2843130 0 - C C C/G genomic single unknown 0 0 intron,ncRNA exact 1 17 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 602 chr1 2283843 2283844 rs74047119 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,SSMP, 2 A,G, 513.000000,4495.000000, 0.102436,0.897564, maf-5-some-pop 602 chr1 2284002 2284003 rs2645082 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4392.000000,616.000000, 0.876997,0.123003, maf-5-some-pop 602 chr1 2284028 2284029 rs115742147 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 602 chr1 2284166 2284167 rs78851444 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 602 chr1 2284485 2284486 rs12049067 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4004.000000,1004.000000, 0.799521,0.200479, maf-5-some-pop,maf-5-all-pops 602 chr1 2284897 2284898 rs2840529 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2834.000000,2174.000000, 0.565895,0.434105, maf-5-some-pop,maf-5-all-pops 602 chr1 2285729 2285730 rs2840530 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4098.000000,910.000000, 0.818291,0.181709, maf-5-some-pop 602 chr1 2285835 2285836 rs144204762 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 57.000000,4951.000000, 0.011382,0.988618, 602 chr1 2286080 2286080 rs572405646 0 + - - -/CCA genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,CCA, 4937.000000,71.000000, 0.985823,0.014177, 602 chr1 2286083 2286084 rs11576390 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4544.000000,464.000000, 0.907348,0.092652, maf-5-some-pop 602 chr1 2286407 2286408 rs2840531 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4109.000000,899.000000, 0.820487,0.179513, maf-5-some-pop 602 chr1 2286919 2286920 rs55721639 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4221.000000,787.000000, 0.842851,0.157149, maf-5-some-pop 602 chr1 2286946 2286947 rs1039100 0 + A A A/G genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 586.000000,4422.000000, 0.117013,0.882987, maf-5-some-pop 602 chr1 2287109 2287110 rs1039101 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4104.000000,904.000000, 0.819489,0.180511, maf-5-some-pop,maf-5-all-pops 602 chr1 2287126 2287127 rs116560297 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 602 chr1 2287146 2287147 rs10159277 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop,maf-5-all-pops 602 chr1 2287416 2287417 rs55722018 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 602 chr1 2287516 2287517 rs2645083 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 602 chr1 2287533 2287534 rs11577374 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4291.000000,717.000000, 0.856829,0.143171, maf-5-some-pop 602 chr1 2287596 2287597 rs2645084 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4104.000000,904.000000, 0.819489,0.180511, maf-5-some-pop 602 chr1 2287615 2287616 rs2645085 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2829.000000,2179.000000, 0.564896,0.435104, maf-5-some-pop,maf-5-all-pops 602 chr1 2287700 2287701 rs116787018 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 602 chr1 2287847 2287848 rs16825067 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 1698.000000,3310.000000, 0.339058,0.660942, maf-5-some-pop,maf-5-all-pops 602 chr1 2287899 2287900 rs75627712 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 602 chr1 2288230 2288231 rs113994560 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 602 chr1 2288492 2288493 rs79496861 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 602 chr1 2288534 2288535 rs2643890 0 + C C C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP, 2 C,G, 4215.000000,793.000000, 0.841653,0.158347, maf-5-some-pop,maf-5-all-pops 602 chr1 2288746 2288747 rs2645086 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,WUGSC_SSAHASNP,YUSUKE, 2 C,T, 2915.000000,2093.000000, 0.582069,0.417931, maf-5-some-pop,maf-5-all-pops 602 chr1 2288851 2288852 rs2645087 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 14 1000GENOMES,BGI,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SC_SNP,SSMP,YUSUKE, 2 A,G, 907.000000,4101.000000, 0.181110,0.818890, maf-5-some-pop 602 chr1 2289250 2289251 rs903913 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,ENSEMBL,GMI,ILLUMINA,TSC-CSHL, 2 C,T, 984.000000,4024.000000, 0.196486,0.803514, 602 chr1 2289320 2289321 rs903914 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL, 2 A,G, 721.000000,4287.000000, 0.143970,0.856030, maf-5-some-pop 602 chr1 2289479 2289480 rs903915 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4105.000000,903.000000, 0.819688,0.180312, maf-5-some-pop 602 chr1 2289811 2289812 rs870207 0 - A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 602 chr1 2289823 2289824 rs140412337 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 602 chr1 2290454 2290455 rs77635686 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 602 chr1 2290455 2290456 rs7526947 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop,maf-5-all-pops 602 chr1 2290620 2290621 rs74592053 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 224.000000,4784.000000, 0.044728,0.955272, maf-5-some-pop,maf-5-all-pops 602 chr1 2290659 2290660 rs2645088 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4380.000000,628.000000, 0.874601,0.125399, maf-5-some-pop 602 chr1 2290910 2290911 rs2645089 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1743.000000,3265.000000, 0.348043,0.651957, maf-5-some-pop,maf-5-all-pops 602 chr1 2291154 2291155 rs113865376 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 334.000000,4674.000000, 0.066693,0.933307, 602 chr1 2291252 2291253 rs145112946 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 602 chr1 2291266 2291267 rs6424093 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4032.000000,976.000000, 0.805112,0.194888, maf-5-some-pop,maf-5-all-pops 602 chr1 2291513 2291514 rs58684419 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,maf-5-all-pops 602 chr1 2291794 2291795 rs78208465 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 602 chr1 2292351 2292352 rs2643891 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP, 2 A,G, 1873.000000,3135.000000, 0.374002,0.625998, maf-5-some-pop,maf-5-all-pops 602 chr1 2292409 2292410 rs114980840 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 602 chr1 2292553 2292554 rs115851426 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 602 chr1 2292652 2292653 rs6674705 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN, 2 A,C, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 602 chr1 2292687 2292688 rs2840540 0 - C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 602 chr1 2292771 2292771 rs59328016 0 + - - -/G genomic insertion unknown 0 0 intron between 1 9 1000GENOMES,BGI,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,G, 2145.000000,2863.000000, 0.428315,0.571685, 602 chr1 2293068 2293069 rs78147580 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4653.000000,355.000000, 0.929113,0.070887, maf-5-some-pop,maf-5-all-pops 602 chr1 2293667 2293668 rs56380007 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4544.000000,464.000000, 0.907348,0.092652, maf-5-some-pop 602 chr1 2293723 2293724 rs77979998 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4655.000000,353.000000, 0.929513,0.070487, maf-5-some-pop,maf-5-all-pops 602 chr1 2293790 2293791 rs79859931 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,maf-5-all-pops 602 chr1 2294156 2294157 rs10797420 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1612.000000,3396.000000, 0.321885,0.678115, 602 chr1 2294258 2294259 rs12062129 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SC_SNP, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 602 chr1 2294302 2294302 rs139162854 0 + - - -/A genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER, 2 -,A, 4544.000000,464.000000, 0.907348,0.092652, 602 chr1 2294843 2294844 rs55873848 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3153.000000,1855.000000, 0.629593,0.370407, maf-5-some-pop,maf-5-all-pops 602 chr1 2295029 2295030 rs7530501 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 980.000000,4028.000000, 0.195687,0.804313, maf-5-some-pop,maf-5-all-pops 602 chr1 2295061 2295062 rs75267109 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, 602 chr1 2295207 2295208 rs57840322 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK, 2 A,G, 3464.000000,1544.000000, 0.691693,0.308307, 602 chr1 2295265 2295266 rs6682345 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,GMI, 2 A,T, 1836.000000,3172.000000, 0.366613,0.633387, 602 chr1 2295557 2295558 rs75331337 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 602 chr1 2295777 2295778 rs10910055 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,C, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop,maf-5-all-pops 602 chr1 2295851 2295851 rs367566087 0 + - - -/TTGT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BILGI_BIOE,SSIP, 2 -,TTGT, 715.000000,4293.000000, 0.142772,0.857228, 602 chr1 2295878 2295879 rs201596522 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4876.000000,132.000000, 0.973642,0.026358, 602 chr1 2295922 2295923 rs12026746 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,PJP,SC_SNP,SSMP, 2 C,T, 4105.000000,903.000000, 0.819688,0.180312, 602 chr1 2295937 2295938 rs6685453 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,HGSV,SSMP, 2 A,G, 3412.000000,1596.000000, 0.681310,0.318690, 602 chr1 2296046 2296047 rs58583111 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 A,C, 780.000000,4228.000000, 0.155751,0.844249, 602 chr1 2296095 2296096 rs7539098 0 + A A A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 A,T, 2318.000000,2690.000000, 0.462859,0.537141, 602 chr1 2296096 2296097 rs7539099 0 + A A A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 A,T, 2315.000000,2693.000000, 0.462260,0.537740, 602 chr1 2296658 2296659 rs201284055 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4164.000000,844.000000, 0.831470,0.168530, 602 chr1 2296674 2296675 rs202034166 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,BILGI_BIOE,GMI,SSMP, 2 C,T, 3574.000000,1434.000000, 0.713658,0.286342, 602 chr1 2296771 2296772 rs199965341 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 1485.000000,3523.000000, 0.296526,0.703474, 602 chr1 2296821 2296822 rs10910057 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4367.000000,641.000000, 0.872005,0.127995, 602 chr1 2297459 2297460 rs7366927 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,EVA-GONL,GMI,HUMANGENOME_JCVI,SC_SNP,SSMP,WI_SSAHASNP, 2 C,T, 2757.000000,2251.000000, 0.550519,0.449481, 602 chr1 2297681 2297682 rs4571912 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,GMI,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP, 2 C,T, 3513.000000,1495.000000, 0.701478,0.298522, 602 chr1 2297750 2297751 rs12028733 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SC_SNP,SSMP, 2 C,T, 4100.000000,908.000000, 0.818690,0.181310, 602 chr1 2297927 2297928 rs148529455 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,LUNTER, 2 -,A, 233.000000,4775.000000, 0.046526,0.953474, 602 chr1 2297934 2297935 rs10910058 0 + A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP, 2 A,T, 3512.000000,1496.000000, 0.701278,0.298722, maf-5-some-pop,maf-5-all-pops 602 chr1 2297993 2297994 rs10910059 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1536.000000,3472.000000, 0.306709,0.693291, 602 chr1 2298254 2298255 rs4648834 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3412.000000,1596.000000, 0.681310,0.318690, maf-5-some-pop,maf-5-all-pops 602 chr1 2298395 2298407 rs148848309 0 + AAAATACATAGA AAAATACATAGA -/AAAATACATAGA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,LUNTER, 2 -,AAAATACATAGA, 1896.000000,3112.000000, 0.378594,0.621406, 602 chr1 2298493 2298494 rs55960350 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 880.000000,4128.000000, 0.175719,0.824281, maf-5-some-pop,maf-5-all-pops 602 chr1 2298635 2298636 rs10453826 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1523.000000,3485.000000, 0.304113,0.695887, maf-5-some-pop,maf-5-all-pops 602 chr1 2299082 2299083 rs6704200 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3511.000000,1497.000000, 0.701078,0.298922, maf-5-some-pop 602 chr1 2299237 2299238 rs12069579 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3508.000000,1500.000000, 0.700479,0.299521, maf-5-some-pop,maf-5-all-pops 602 chr1 2299310 2299311 rs12071572 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3156.000000,1852.000000, 0.630192,0.369808, 602 chr1 2299346 2299347 rs59094876 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4333.000000,675.000000, 0.865216,0.134784, 602 chr1 2299626 2299627 rs7545940 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1835.000000,3173.000000, 0.366414,0.633586, maf-5-some-pop,maf-5-all-pops 602 chr1 2299911 2299912 rs7546224 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1931.000000,3077.000000, 0.385583,0.614417, maf-5-some-pop,maf-5-all-pops 602 chr1 2300156 2300157 rs12070927 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1480.000000,3528.000000, 0.295527,0.704473, maf-5-some-pop,maf-5-all-pops 602 chr1 2300377 2300378 rs7514750 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1521.000000,3487.000000, 0.303714,0.696286, 602 chr1 2300556 2300557 rs56117848 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 478.000000,4530.000000, 0.095447,0.904553, 602 chr1 2300626 2300626 rs113988166 0 + - - -/A genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,PJP,SSMP, 2 -,A, 4192.000000,816.000000, 0.837061,0.162939, 602 chr1 2300648 2300649 rs7542190 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3498.000000,1510.000000, 0.698482,0.301518, 602 chr1 2300774 2300775 rs7554609 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 4003.000000,1005.000000, 0.799321,0.200679, maf-5-some-pop,maf-5-all-pops 602 chr1 2301152 2301156 rs71578385 0 + TAAT TAAT -/TAAT genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,TAAT, 1087.000000,3921.000000, 0.217053,0.782947, 602 chr1 2301346 2301347 rs76578170 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 602 chr1 2302480 2302480 rs549173377 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,A, 4627.000000,381.000000, 0.923922,0.076078, 602 chr1 2302665 2302665 rs57413417 0 + - - -/ACA/ACAACCACA genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,GMI,LUNTER, 3 -,ACA,ACAACCACA, 2239.000000,836.000000,1933.000000, 0.447085,0.166933,0.385982, 602 chr1 2302910 2302911 rs10910060 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop 602 chr1 2303347 2303348 rs527378330 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 626.000000,4382.000000, 0.125000,0.875000, 602 chr1 2303511 2303512 rs10910061 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop 602 chr1 2305469 2305470 rs79512970 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 602 chr1 2306674 2306675 rs61760818 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 602 chr1 2306694 2306695 rs2279703 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3113.000000,1895.000000, 0.621605,0.378395, maf-5-some-pop,maf-5-all-pops 602 chr1 2306830 2306831 rs12743492 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,C, 101.000000,4907.000000, 0.020168,0.979832, 602 chr1 2306909 2306910 rs75230941 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4582.000000,426.000000, 0.914936,0.085064, maf-5-some-pop,maf-5-all-pops 602 chr1 2306971 2306972 rs7519807 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1305.000000,3703.000000, 0.260583,0.739417, maf-5-some-pop 602 chr1 2307082 2307083 rs115738499 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 602 chr1 2307104 2307105 rs80233729 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, 602 chr1 2307259 2307260 rs113996198 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,T, 69.000000,4939.000000, 0.013778,0.986222, 602 chr1 2307480 2307481 rs12033324 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 394.000000,4614.000000, 0.078674,0.921326, maf-5-some-pop 602 chr1 2307568 2307569 rs12030560 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 394.000000,4614.000000, 0.078674,0.921326, maf-5-some-pop 602 chr1 2307677 2307678 rs16825081 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop 602 chr1 2307687 2307688 rs76214556 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 602 chr1 2307759 2307760 rs72920997 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 602 chr1 2308028 2308029 rs12070746 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop,maf-5-all-pops 602 chr1 2308223 2308224 rs12404555 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop 602 chr1 2308516 2308517 rs2843162 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 602 chr1 2308611 2308612 rs10910062 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 602 chr1 2309007 2309008 rs116527876 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 602 chr1 2309025 2309026 rs72921000 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 602 chr1 2310077 2310078 rs12032766 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 581.000000,4427.000000, 0.116014,0.883986, maf-5-some-pop,maf-5-all-pops 602 chr1 2310192 2310193 rs903901 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 582.000000,4426.000000, 0.116214,0.883786, maf-5-some-pop 602 chr1 2310469 2310470 rs903902 0 + A A A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,CLINSEQ_SNP,GMI,HGSV,JMKIDD_LAB,TSC-CSHL,YUSUKE, 2 A,T, 4423.000000,585.000000, 0.883187,0.116813, maf-5-some-pop,maf-5-all-pops 602 chr1 2311392 2311393 rs61760819 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4095.000000,913.000000, 0.817692,0.182308, maf-5-some-pop,maf-5-all-pops 602 chr1 2311879 2311880 rs12566416 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4408.000000,600.000000, 0.880192,0.119808, maf-5-some-pop,maf-5-all-pops 602 chr1 2312168 2312169 rs114821924 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop,maf-5-all-pops 602 chr1 2312394 2312395 rs2643908 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 708.000000,4300.000000, 0.141374,0.858626, maf-5-some-pop 602 chr1 2312459 2312460 rs58350471 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 602 chr1 2312782 2312783 rs77454251 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4424.000000,584.000000, 0.883387,0.116613, maf-5-some-pop,maf-5-all-pops 602 chr1 2312942 2312943 rs12033172 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4408.000000,600.000000, 0.880192,0.119808, maf-5-some-pop,maf-5-all-pops 602 chr1 2313611 2313612 rs77250843 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop,maf-5-all-pops 602 chr1 2314215 2314216 rs72923105 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 602 chr1 2314421 2314422 rs76460096 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 602 chr1 2314462 2314463 rs12742461 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3697.000000,1311.000000, 0.738219,0.261781, maf-5-some-pop 602 chr1 2314500 2314501 rs76432159 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4423.000000,585.000000, 0.883187,0.116813, maf-5-some-pop,maf-5-all-pops 602 chr1 2315031 2315032 rs115217673 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 602 chr1 2315046 2315047 rs138447795 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4955.000000,53.000000, 0.989417,0.010583, 602 chr1 2315185 2315186 rs12032507 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 284.000000,4724.000000, 0.056709,0.943291, 602 chr1 2315262 2315263 rs12035227 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2888.000000,2120.000000, 0.576677,0.423323, maf-5-some-pop,maf-5-all-pops 602 chr1 2315413 2315414 rs12724614 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,maf-5-all-pops 602 chr1 2315437 2315438 rs2645060 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 613.000000,4395.000000, 0.122404,0.877596, maf-5-some-pop 602 chr1 2315965 2315966 rs72923110 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 602 chr1 2316516 2316517 rs58981764 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 602 chr1 2316582 2316583 rs12565955 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 C,T, 4362.000000,646.000000, 0.871006,0.128994, maf-5-some-pop,maf-5-all-pops 602 chr1 2316988 2316990 rs556462194 0 + GG GG -/GG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GG, 1237.000000,3771.000000, 0.247005,0.752995, 602 chr1 2317068 2317069 rs16825089 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 3721.000000,1287.000000, 0.743011,0.256989, maf-5-some-pop 602 chr1 2317493 2317494 rs16825090 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,G, 4671.000000,337.000000, 0.932708,0.067292, maf-5-some-pop 602 chr1 2317863 2317863 rs545219530 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 4930.000000,78.000000, 0.984425,0.015575, 602 chr1 2317919 2317920 rs61294614 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, 602 chr1 2318059 2318060 rs12077491 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 492.000000,4516.000000, 0.098243,0.901757, maf-5-some-pop,maf-5-all-pops 602 chr1 2318652 2318653 rs3736331 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 703.000000,4305.000000, 0.140375,0.859625, maf-5-some-pop 602 chr1 2319328 2319329 rs72923113 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 602 chr1 2319642 2319644 rs148756962 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,AA, 60.000000,4948.000000, 0.011981,0.988019, 602 chr1 2320088 2320089 rs111294384 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 602 chr1 2320195 2320196 rs142614548 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 602 chr1 2320694 2320695 rs111298664 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 602 chr1 2320701 2320702 rs4648633 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 525.000000,4483.000000, 0.104832,0.895168, maf-5-some-pop 602 chr1 2321098 2321099 rs74366400 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 604.000000,4404.000000, 0.120607,0.879393, maf-5-some-pop,maf-5-all-pops 602 chr1 2322191 2322192 rs531213654 0 + T T -/T genomic deletion unknown 0 0 intron,near-gene-5,untranslated-5 exact 1 1 1000GENOMES, 2 -,T, 375.000000,4633.000000, 0.074880,0.925120, 602 chr1 2322620 2322621 rs151309380 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 602 chr1 2322725 2322726 rs71630976 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI, 2 A,G, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop,maf-5-all-pops 602 chr1 2323040 2323041 rs77804600 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,MPI_MOLGEN,SSMP, 2 C,T, 878.000000,4130.000000, 0.175319,0.824681, maf-5-some-pop,maf-5-all-pops 602 chr1 2323566 2323567 rs2935277 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP, 2 C,T, 2022.000000,2986.000000, 0.403754,0.596246, 602 chr1 2324320 2324321 rs68103143 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop,maf-5-all-pops 602 chr1 2324335 2324336 rs3820010 0 - T T A/C/G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 SingleClassQuadAllelic 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 4 A,C,G,T, 3450.000000,1558.000000,1558.000000,3450.000000, 0.344449,0.155551,0.155551,0.344449, maf-5-some-pop,maf-5-all-pops,rs-cluster-nonoverlapping-alleles 602 chr1 2324880 2324881 rs11804135 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 1154.000000,3854.000000, 0.230431,0.769569, maf-5-some-pop,maf-5-all-pops 602 chr1 2325159 2325160 rs75069099 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 602 chr1 2325370 2325371 rs16825102 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 339.000000,4669.000000, 0.067692,0.932308, maf-5-some-pop 602 chr1 2325759 2325760 rs76927534 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop 602 chr1 2326799 2326800 rs72924933 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop 602 chr1 2326811 2326812 rs903911 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 3175.000000,1833.000000, 0.633986,0.366014, maf-5-some-pop,maf-5-all-pops 602 chr1 2326859 2326860 rs72924934 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 602 chr1 2326917 2326918 rs10910063 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 1199.000000,3809.000000, 0.239417,0.760583, maf-5-some-pop,maf-5-all-pops 602 chr1 2326959 2326960 rs76681987 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 602 chr1 2327074 2327075 rs3736330 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,YUSUKE, 2 C,T, 3825.000000,1183.000000, 0.763778,0.236222, maf-5-some-pop 602 chr1 2328500 2328501 rs558994274 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 1279.000000,3729.000000, 0.255391,0.744609, 602 chr1 2328713 2328714 rs2645081 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop,maf-5-all-pops 602 chr1 2329157 2329158 rs2172901 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop 602 chr1 2329211 2329212 rs4648838 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,PJP,WI_SSAHASNP, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 602 chr1 2329413 2329414 rs57204595 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,C, 428.000000,4580.000000, 0.085463,0.914537, 602 chr1 2329660 2329661 rs6698680 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 3263.000000,1745.000000, 0.651558,0.348442, maf-5-some-pop,maf-5-all-pops 602 chr1 2329881 2329882 rs148917966 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 602 chr1 2330015 2330016 rs6685829 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 C,T, 2949.000000,2059.000000, 0.588858,0.411142, 602 chr1 2330189 2330190 rs6693447 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 1746.000000,3262.000000, 0.348642,0.651358, maf-5-some-pop,maf-5-all-pops 602 chr1 2331138 2331139 rs75262920 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop 602 chr1 2332037 2332038 rs55912310 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4585.000000,423.000000, 0.915535,0.084465, maf-5-some-pop,maf-5-all-pops 602 chr1 2332390 2332391 rs12037485 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3304.000000,1704.000000, 0.659744,0.340256, maf-5-some-pop,maf-5-all-pops 602 chr1 2332658 2332658 rs372896454 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,SSMP,WARNICH_LAB, 2 -,T, 3613.000000,1395.000000, 0.721446,0.278554, 602 chr1 2332664 2332665 rs79293445 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,ENSEMBL, 2 C,T, 1265.000000,3743.000000, 0.252596,0.747404, 602 chr1 2332665 2332666 rs77784287 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ENSEMBL, 2 C,T, 3743.000000,1265.000000, 0.747404,0.252596, 602 chr1 2333944 2333944 rs78924098 0 + - - -/C genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BGI,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,C, 1108.000000,3900.000000, 0.221246,0.778754, 602 chr1 2334260 2334261 rs72642191 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4594.000000,414.000000, 0.917332,0.082668, maf-5-some-pop 602 chr1 2334855 2334856 rs41315648 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,SI_EXO, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 602 chr1 2335325 2335326 rs113686958 0 + C C C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 602 chr1 2335872 2335873 rs58886116 0 + T T C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop 602 chr1 2335968 2335969 rs12085089 0 + C C C/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 16 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop,maf-5-all-pops 602 chr1 2337276 2337277 rs11586985 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 14 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4603.000000,405.000000, 0.919129,0.080871, maf-5-some-pop,maf-5-all-pops 602 chr1 2337402 2337403 rs75437503 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 602 chr1 2337536 2337537 rs2494426 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1152.000000,3856.000000, 0.230032,0.769968, maf-5-some-pop,maf-5-all-pops 602 chr1 2338568 2338569 rs2494427 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3860.000000,1148.000000, 0.770767,0.229233, maf-5-some-pop,maf-5-all-pops 602 chr1 2338657 2338658 rs58827215 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop 602 chr1 2338878 2338879 rs6671420 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3304.000000,1704.000000, 0.659744,0.340256, maf-5-some-pop,maf-5-all-pops 602 chr1 2339073 2339074 rs2494428 0 + C C C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1243.000000,3765.000000, 0.248203,0.751797, maf-5-some-pop,maf-5-all-pops 602 chr1 2339138 2339139 rs6671730 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1710.000000,3298.000000, 0.341454,0.658546, maf-5-some-pop,maf-5-all-pops 602 chr1 2339214 2339215 rs61373429 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK, 2 G,T, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 602 chr1 2339394 2339395 rs2494429 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1228.000000,3780.000000, 0.245208,0.754792, maf-5-some-pop,maf-5-all-pops 602 chr1 2339397 2339398 rs116081827 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop,maf-5-all-pops 602 chr1 2339426 2339427 rs4648634 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop,maf-5-all-pops 602 chr1 2339572 2339573 rs79338697 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4667.000000,341.000000, 0.931909,0.068091, maf-5-some-pop 602 chr1 2339608 2339609 rs76232811 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop,maf-5-all-pops 602 chr1 2340503 2340504 rs12092052 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3540.000000,1468.000000, 0.706869,0.293131, maf-5-some-pop,maf-5-all-pops 602 chr1 2340539 2340540 rs142572177 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,T, 215.000000,4793.000000, 0.042931,0.957069, 602 chr1 2341059 2341060 rs61760854 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4120.000000,888.000000, 0.822684,0.177316, maf-5-some-pop,maf-5-all-pops 602 chr1 2342566 2342567 rs72642198 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop,maf-5-all-pops 602 chr1 2342658 2342658 rs143303491 0 + - - -/A genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,A, 4578.000000,430.000000, 0.914137,0.085863, 602 chr1 2344924 2344925 rs9424320 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop,maf-5-all-pops 602 chr1 2345502 2345503 rs2494430 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 602 chr1 2345965 2345966 rs11811122 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,ABI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop 602 chr1 2346098 2346099 rs7556447 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4238.000000,770.000000, 0.846246,0.153754, maf-5-some-pop,maf-5-all-pops 602 chr1 2346452 2346453 rs576870974 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 602 chr1 2346457 2346458 rs186645234 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4945.000000,63.000000, 0.987420,0.012580, 602 chr1 2346480 2346481 rs147472677 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 52.000000,4956.000000, 0.010383,0.989617, 602 chr1 2346481 2346482 rs4648839 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4501.000000,507.000000, 0.898762,0.101238, 602 chr1 2346523 2346524 rs10910066 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 1216.000000,3792.000000, 0.242812,0.757188, maf-5-some-pop,maf-5-all-pops 602 chr1 2346573 2346574 rs11811535 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 C,T, 116.000000,4892.000000, 0.023163,0.976837, 602 chr1 2346614 2346615 rs55868349 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 C,G, 4752.000000,256.000000, 0.948882,0.051118, 602 chr1 2346702 2346703 rs144132608 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 602 chr1 2347464 2347465 rs77529941 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 512.000000,4496.000000, 0.102236,0.897764, maf-5-some-pop 602 chr1 2347465 2347466 rs12746918 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3970.000000,1038.000000, 0.792732,0.207268, maf-5-some-pop,maf-5-all-pops 602 chr1 2347565 2347566 rs10910067 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4211.000000,797.000000, 0.840855,0.159145, maf-5-some-pop,maf-5-all-pops 602 chr1 2347655 2347656 rs2494431 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF, 2 A,C, 4945.000000,63.000000, 0.987420,0.012580, 602 chr1 2347731 2347732 rs12184328 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1643.000000,3365.000000, 0.328075,0.671925, maf-5-some-pop,maf-5-all-pops 602 chr1 2347930 2347931 rs115326979 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 602 chr1 2348039 2348040 rs10910068 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2171.000000,2837.000000, 0.433506,0.566494, maf-5-some-pop,maf-5-all-pops 602 chr1 2348852 2348852 rs143654429 0 + - - -/CCCAGCTT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CCCAGCTT, 4020.000000,988.000000, 0.802716,0.197284, 602 chr1 2348859 2348859 rs370335666 0 + - - -/TCCCAGCC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,HUMANGENOME_JCVI, 2 -,TCCCAGCC, 4045.000000,963.000000, 0.807708,0.192292, 602 chr1 2348982 2348983 rs80045357 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 602 chr1 2349111 2349112 rs148292210 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 602 chr1 2349768 2349769 rs2494432 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3227.000000,1781.000000, 0.644369,0.355631, maf-5-some-pop,maf-5-all-pops 602 chr1 2350443 2350444 rs61760855 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4070.000000,938.000000, 0.812700,0.187300, maf-5-some-pop,maf-5-all-pops 602 chr1 2350911 2350912 rs10910070 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1798.000000,3210.000000, 0.359026,0.640974, maf-5-some-pop,maf-5-all-pops 602 chr1 2351095 2351096 rs11577147 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3359.000000,1649.000000, 0.670727,0.329273, maf-5-some-pop,maf-5-all-pops 602 chr1 2351394 2351395 rs112972257 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA, 2 A,G, 1035.000000,3973.000000, 0.206669,0.793331, maf-5-some-pop,maf-5-all-pops 602 chr1 2351401 2351402 rs146495871 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,C, 1070.000000,3938.000000, 0.213658,0.786342, 602 chr1 2351574 2351575 rs11590507 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 1807.000000,3201.000000, 0.360823,0.639177, maf-5-some-pop,maf-5-all-pops 602 chr1 2351698 2351699 rs3935659 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1849.000000,3159.000000, 0.369209,0.630791, maf-5-some-pop,maf-5-all-pops 602 chr1 2351878 2351879 rs3935660 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3996.000000,1012.000000, 0.797923,0.202077, maf-5-some-pop,maf-5-all-pops 602 chr1 2352008 2352009 rs147083720 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4944.000000,64.000000, 0.987220,0.012780, 602 chr1 2352145 2352146 rs12731309 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3981.000000,1027.000000, 0.794928,0.205072, maf-5-some-pop,maf-5-all-pops 602 chr1 2352393 2352394 rs576765165 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 778.000000,4230.000000, 0.155351,0.844649, 602 chr1 2352539 2352540 rs111685018 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, 602 chr1 2352951 2352952 rs79670281 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 602 chr1 2353084 2353085 rs10910071 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3092.000000,1916.000000, 0.617412,0.382588, maf-5-some-pop,maf-5-all-pops 602 chr1 2353294 2353295 rs12143389 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3169.000000,1839.000000, 0.632788,0.367212, 602 chr1 2353368 2353369 rs111732473 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4809.000000,199.000000, 0.960264,0.039736, 602 chr1 2353420 2353420 rs111459282 0 + - - -/AAGAA genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,LUNTER, 2 -,AAGAA, 3148.000000,1860.000000, 0.628594,0.371406, 602 chr1 2353655 2353656 rs61760856 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4071.000000,937.000000, 0.812899,0.187101, 602 chr1 2353663 2353664 rs61760857 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4071.000000,937.000000, 0.812899,0.187101, 602 chr1 2353703 2353704 rs9424314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,SC_SNP,TISHKOFF, 2 C,T, 4026.000000,982.000000, 0.803914,0.196086, maf-5-some-pop,maf-5-all-pops 602 chr1 2353710 2353710 rs112933998 0 + - - -/AAAC genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,BUSHMAN,LUNTER, 2 -,AAAC, 3154.000000,1854.000000, 0.629792,0.370208, 602 chr1 2353829 2353830 rs116468943 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 602 chr1 2354369 2354370 rs12022832 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1700.000000,3308.000000, 0.339457,0.660543, maf-5-some-pop,maf-5-all-pops 602 chr1 2354399 2354400 rs12096965 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4216.000000,792.000000, 0.841853,0.158147, maf-5-some-pop,maf-5-all-pops 602 chr1 2354562 2354563 rs12097032 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4218.000000,790.000000, 0.842252,0.157748, maf-5-some-pop,maf-5-all-pops 602 chr1 2354885 2354886 rs10797421 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2956.000000,2052.000000, 0.590256,0.409744, maf-5-some-pop,maf-5-all-pops 602 chr1 2355222 2355223 rs12118145 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 1058.000000,3950.000000, 0.211262,0.788738, maf-5-some-pop,maf-5-all-pops 602 chr1 2355399 2355400 rs67532508 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4020.000000,988.000000, 0.802716,0.197284, maf-5-some-pop,maf-5-all-pops 602 chr1 2355562 2355563 rs10797422 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3976.000000,1032.000000, 0.793930,0.206070, maf-5-some-pop,maf-5-all-pops 602 chr1 2355838 2355839 rs57941503 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4356.000000,652.000000, 0.869808,0.130192, maf-5-some-pop,maf-5-all-pops 602 chr1 2356109 2356110 rs12561849 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 667.000000,4341.000000, 0.133187,0.866813, 602 chr1 2356146 2356147 rs150533628 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 602 chr1 2356148 2356149 rs140445640 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 602 chr1 2356151 2356152 rs12116807 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 879.000000,4129.000000, 0.175519,0.824481, 602 chr1 2356163 2356164 rs147779952 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 124.000000,4884.000000, 0.024760,0.975240, 602 chr1 2356192 2356193 rs187136350 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 602 chr1 2356548 2356549 rs76434064 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 602 chr1 2356576 2356577 rs4648840 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1474.000000,3534.000000, 0.294329,0.705671, maf-5-some-pop,maf-5-all-pops 602 chr1 2356678 2356680 rs200839223 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,AT, 68.000000,4940.000000, 0.013578,0.986422, 602 chr1 2356702 2356703 rs566112097 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 602 chr1 2356911 2356912 rs2494433 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3514.000000,1494.000000, 0.701677,0.298323, maf-5-some-pop,maf-5-all-pops 602 chr1 2357129 2357129 rs536123585 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 4011.000000,997.000000, 0.800919,0.199081, 602 chr1 2357417 2357418 rs57272015 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop,maf-5-all-pops 602 chr1 2358091 2358092 rs60433957 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 820.000000,4188.000000, 0.163738,0.836262, maf-5-some-pop,maf-5-all-pops 602 chr1 2358401 2358402 rs80070249 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 602 chr1 2358580 2358581 rs116072351 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 602 chr1 2358672 2358673 rs554408734 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,G, 120.000000,4888.000000, 0.023962,0.976038, 602 chr1 2358754 2358755 rs58195653 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,GMI,HGSV,SSMP,TISHKOFF, 2 C,G, 1667.000000,3341.000000, 0.332867,0.667133, maf-5-some-pop,maf-5-all-pops 602 chr1 2358847 2358848 rs12116913 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP, 2 C,G, 938.000000,4070.000000, 0.187300,0.812700, maf-5-some-pop,maf-5-all-pops 602 chr1 2358943 2358944 rs10797423 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3204.000000,1804.000000, 0.639776,0.360224, maf-5-some-pop,maf-5-all-pops 602 chr1 2359250 2359251 rs10910072 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BGI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 G,T, 4234.000000,774.000000, 0.845447,0.154553, maf-5-some-pop,maf-5-all-pops 602 chr1 2359279 2359280 rs2494435 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop,maf-5-all-pops 603 chr1 2359657 2359658 rs113841966 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 603 chr1 2359861 2359862 rs10910073 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1511.000000,3497.000000, 0.301717,0.698283, maf-5-some-pop,maf-5-all-pops 603 chr1 2359905 2359906 rs115084794 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 603 chr1 2359916 2359917 rs2494436 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3703.000000,1305.000000, 0.739417,0.260583, maf-5-some-pop,maf-5-all-pops 603 chr1 2359939 2359940 rs7515934 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 C,T, 4063.000000,945.000000, 0.811302,0.188698, maf-5-some-pop 603 chr1 2359980 2359981 rs12022929 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4346.000000,662.000000, 0.867812,0.132188, maf-5-some-pop 603 chr1 2360158 2360159 rs10910074 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,SSMP, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 603 chr1 2360341 2360342 rs78513244 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, 603 chr1 2360441 2360442 rs115158477 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 603 chr1 2360652 2360653 rs11578875 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4276.000000,732.000000, 0.853834,0.146166, maf-5-some-pop,maf-5-all-pops 603 chr1 2360819 2360820 rs11578895 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3391.000000,1617.000000, 0.677117,0.322883, maf-5-some-pop,maf-5-all-pops 603 chr1 2360880 2360881 rs79984876 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 603 chr1 2361131 2361132 rs10910075 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4022.000000,986.000000, 0.803115,0.196885, maf-5-some-pop,maf-5-all-pops 603 chr1 2361639 2361640 rs2494437 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1573.000000,3435.000000, 0.314097,0.685903, maf-5-some-pop,maf-5-all-pops 603 chr1 2361665 2361666 rs60149985 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4008.000000,1000.000000, 0.800319,0.199681, maf-5-some-pop,maf-5-all-pops 603 chr1 2362000 2362001 rs79979005 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 603 chr1 2362019 2362020 rs4531246 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3356.000000,1652.000000, 0.670128,0.329872, maf-5-some-pop,maf-5-all-pops 603 chr1 2362763 2362764 rs10797424 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,TISHKOFF, 2 A,T, 3353.000000,1655.000000, 0.669529,0.330471, maf-5-some-pop,maf-5-all-pops 603 chr1 2363326 2363327 rs2494640 0 - G G C/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 603 chr1 2363420 2363421 rs11577570 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop 603 chr1 2364507 2364508 rs55663320 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 4006.000000,1002.000000, 0.799920,0.200080, maf-5-some-pop,maf-5-all-pops 603 chr1 2364842 2364843 rs74744468 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 603 chr1 2365003 2365004 rs146400304 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, 603 chr1 2365538 2365539 rs57608977 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 603 chr1 2365884 2365885 rs4648841 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3072.000000,1936.000000, 0.613419,0.386581, maf-5-some-pop 603 chr1 2366127 2366128 rs115055472 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop,maf-5-all-pops 603 chr1 2366415 2366416 rs34090130 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP, 2 -,G, 647.000000,4361.000000, 0.129193,0.870807, 603 chr1 2366485 2366486 rs79243749 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 603 chr1 2366516 2366517 rs61763906 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 568.000000,4440.000000, 0.113419,0.886581, maf-5-some-pop 603 chr1 2366564 2366565 rs56239813 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 603 chr1 2366578 2366579 rs77488960 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,G, 4458.000000,550.000000, 0.890176,0.109824, maf-5-some-pop 603 chr1 2366610 2366611 rs75631842 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 692.000000,4316.000000, 0.138179,0.861821, maf-5-some-pop 603 chr1 2366700 2366701 rs367835188 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 603 chr1 2366741 2366742 rs114429235 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 603 chr1 2366900 2366907 rs546621202 0 + GGCTGGA GGCTGGA -/GGCTGGA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GGCTGGA, 2425.000000,2583.000000, 0.484225,0.515775, 603 chr1 2367011 2367012 rs74346965 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop 603 chr1 2367380 2367381 rs72924961 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 603 chr1 2367659 2367660 rs114064975 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4.000000,114.000000, 0.033898,0.966102, 603 chr1 2367679 2367680 rs530615686 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 603 chr1 2367718 2367719 rs147853100 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4457.000000,551.000000, 0.889976,0.110024, 603 chr1 2367939 2367940 rs529988019 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 940.000000,4068.000000, 0.187700,0.812300, 603 chr1 2368705 2368706 rs2494439 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2806.000000,2202.000000, 0.560304,0.439696, maf-5-some-pop,maf-5-all-pops 603 chr1 2368898 2368899 rs78212635 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BL,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,A, 1403.000000,3605.000000, 0.280152,0.719848, 603 chr1 2369020 2369021 rs61763907 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 249.000000,4759.000000, 0.049720,0.950280, 603 chr1 2369285 2369286 rs75963738 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, 603 chr1 2369374 2369375 rs80047719 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 603 chr1 2369390 2369391 rs59220895 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4538.000000,470.000000, 0.906150,0.093850, maf-5-some-pop 603 chr1 2369497 2369498 rs4592207 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2644.000000,2364.000000, 0.527955,0.472045, maf-5-some-pop,maf-5-all-pops 603 chr1 2369637 2369638 rs147849609 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 603 chr1 2369678 2369679 rs72644609 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 603 chr1 2370449 2370450 rs114935698 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 603 chr1 2371304 2371305 rs76894073 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 603 chr1 2371421 2371422 rs72924964 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop,maf-5-all-pops 603 chr1 2371561 2371562 rs111768234 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 267.000000,4741.000000, 0.053315,0.946685, maf-5-some-pop,maf-5-all-pops 603 chr1 2371685 2371686 rs116663674 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 603 chr1 2371997 2371998 rs12756220 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,SSAHASNP,SSMP, 2 C,T, 14.000000,2.000000, 0.875000,0.125000, 603 chr1 2372019 2372020 rs60585709 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,BL,GMI,HGSV,LUNTER,SSMP, 2 -,T, 2173.000000,2835.000000, 0.433906,0.566094, 603 chr1 2372032 2372033 rs112988888 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,GMI,HGSV, 2 G,T, 2686.000000,2322.000000, 0.536342,0.463658, 603 chr1 2372075 2372076 rs3001354 0 - A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,SC_JCM,SSAHASNP, 4 A,C,G,T, 768.000000,4240.000000,4240.000000,768.000000, 0.076677,0.423323,0.423323,0.076677, rs-cluster-nonoverlapping-alleles 603 chr1 2372100 2372101 rs36046808 0 - G G A/C genomic single by-cluster,by-frequency 0.444444 0.157135 unknown exact 1 8 ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,SSMP, 2 A,C, 4.000000,8.000000, 0.333333,0.666667, 603 chr1 2372132 2372133 rs2494638 0 - G G C/G genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.32 0.24 unknown exact 1 16 ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,G, 3.000000,12.000000, 0.200000,0.800000, 603 chr1 2372140 2372141 rs12728898 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSAHASNP, 2 A,G, 435.000000,4573.000000, 0.086861,0.913139, 603 chr1 2372319 2372320 rs12033966 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4495.000000,513.000000, 0.897564,0.102436, maf-5-some-pop,maf-5-all-pops 603 chr1 2372320 2372321 rs58946679 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3082.000000,1926.000000, 0.615415,0.384585, maf-5-some-pop,maf-5-all-pops 603 chr1 2372396 2372397 rs6688934 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1407.000000,3601.000000, 0.280950,0.719050, maf-5-some-pop,maf-5-all-pops 603 chr1 2372433 2372434 rs180693843 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 603 chr1 2372625 2372626 rs115568605 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop,maf-5-all-pops 603 chr1 2372762 2372763 rs113703612 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,maf-5-all-pops 603 chr1 2372857 2372858 rs2494425 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3997.000000,1011.000000, 0.798123,0.201877, maf-5-some-pop 603 chr1 2372939 2372940 rs74049259 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4650.000000,358.000000, 0.928514,0.071486, maf-5-some-pop,maf-5-all-pops 603 chr1 2372953 2372954 rs6673661 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 1406.000000,3602.000000, 0.280751,0.719249, maf-5-some-pop,maf-5-all-pops 603 chr1 2373088 2373089 rs6659405 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 3326.000000,1682.000000, 0.664137,0.335863, maf-5-some-pop,maf-5-all-pops 603 chr1 2373167 2373168 rs6673880 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1406.000000,3602.000000, 0.280751,0.719249, maf-5-some-pop,maf-5-all-pops 603 chr1 2373235 2373236 rs72644619 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,C, 4954.000000,54.000000, 0.989217,0.010783, 603 chr1 2373386 2373387 rs6669420 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2661.000000,2347.000000, 0.531350,0.468650, maf-5-some-pop,maf-5-all-pops 603 chr1 2373609 2373610 rs58169055 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,T, 513.000000,4495.000000, 0.102436,0.897564, 603 chr1 2373986 2373987 rs7517795 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4407.000000,601.000000, 0.879992,0.120008, maf-5-some-pop,maf-5-all-pops 603 chr1 2374119 2374120 rs12563838 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3543.000000,1465.000000, 0.707468,0.292532, maf-5-some-pop 603 chr1 2374360 2374361 rs61763909 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 603 chr1 2374373 2374374 rs60869548 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 238.000000,4770.000000, 0.047524,0.952476, maf-5-some-pop,maf-5-all-pops 603 chr1 2374430 2374431 rs71511345 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop,maf-5-all-pops 603 chr1 2374757 2374758 rs4648844 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,G, 1406.000000,3602.000000, 0.280751,0.719249, maf-5-some-pop,maf-5-all-pops 603 chr1 2374791 2374792 rs12032473 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 888.000000,4120.000000, 0.177316,0.822684, maf-5-some-pop,maf-5-all-pops 603 chr1 2374895 2374896 rs12754473 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 963.000000,4045.000000, 0.192292,0.807708, maf-5-some-pop,maf-5-all-pops 603 chr1 2375034 2375034 rs144476621 0 + - - -/GCCCCGCCGTGC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,GCCCCGCCGTGC, 184.000000,4824.000000, 0.036741,0.963259, 603 chr1 2375071 2375072 rs570753566 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 603 chr1 2375135 2375136 rs187744641 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,C, 872.000000,4136.000000, 0.174121,0.825879, 603 chr1 2375139 2375140 rs555781028 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4811.000000,197.000000, 0.960663,0.039337, 603 chr1 2375505 2375506 rs6678847 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 2108.000000,2900.000000, 0.420927,0.579073, maf-5-some-pop,maf-5-all-pops 603 chr1 2375586 2375587 rs12736125 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BGI,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4403.000000,605.000000, 0.879193,0.120807, maf-5-some-pop,maf-5-all-pops 603 chr1 2375843 2375844 rs6687012 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3459.000000,1549.000000, 0.690695,0.309305, maf-5-some-pop,maf-5-all-pops 603 chr1 2375975 2375975 rs78539657 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,T, 3539.000000,1469.000000, 0.706669,0.293331, 603 chr1 2376016 2376017 rs72924975 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 240.000000,4768.000000, 0.047923,0.952077, maf-5-some-pop,maf-5-all-pops 603 chr1 2376045 2376046 rs74943598 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 362.000000,4646.000000, 0.072284,0.927716, maf-5-some-pop,maf-5-all-pops 603 chr1 2376100 2376101 rs578219336 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 603 chr1 2376269 2376270 rs77985074 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 603 chr1 2376732 2376733 rs10449222 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 872.000000,4136.000000, 0.174121,0.825879, maf-5-some-pop,maf-5-all-pops 603 chr1 2376894 2376895 rs114303731 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 603 chr1 2377065 2377066 rs12727176 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 620.000000,4388.000000, 0.123802,0.876198, maf-5-some-pop,maf-5-all-pops 603 chr1 2377399 2377400 rs4443836 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop,maf-5-all-pops 603 chr1 2377480 2377481 rs59377883 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,G, 442.000000,4566.000000, 0.088259,0.911741, 603 chr1 2377524 2377525 rs4582732 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4388.000000,620.000000, 0.876198,0.123802, maf-5-some-pop,maf-5-all-pops 603 chr1 2377943 2377944 rs114688267 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 603 chr1 2378237 2378238 rs78792823 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop 603 chr1 2379247 2379248 rs11581548 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 A,G, 1525.000000,3483.000000, 0.304513,0.695487, maf-5-some-pop,maf-5-all-pops 603 chr1 2379500 2379501 rs12406068 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3347.000000,1661.000000, 0.668331,0.331669, maf-5-some-pop,maf-5-all-pops 603 chr1 2379549 2379550 rs12406076 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3357.000000,1651.000000, 0.670327,0.329673, maf-5-some-pop,maf-5-all-pops 603 chr1 2379669 2379670 rs79017481 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 53.000000,4955.000000, 0.010583,0.989417, 603 chr1 2380272 2380273 rs12406134 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4556.000000,452.000000, 0.909744,0.090256, maf-5-some-pop 603 chr1 2380278 2380279 rs10910076 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,SC_SNP, 2 A,G, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop,maf-5-all-pops 603 chr1 2380291 2380292 rs71630977 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 616.000000,4392.000000, 0.123003,0.876997, maf-5-some-pop 603 chr1 2380383 2380384 rs12406368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4516.000000,492.000000, 0.901757,0.098243, maf-5-some-pop,maf-5-all-pops 603 chr1 2380401 2380402 rs72924980 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB, 2 A,G, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop,maf-5-all-pops 603 chr1 2380518 2380519 rs72915778 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop,maf-5-all-pops 603 chr1 2380699 2380700 rs113734936 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, 603 chr1 2380846 2380847 rs113383952 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4779.000000,229.000000, 0.954273,0.045727, 603 chr1 2381163 2381164 rs72644624 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, 603 chr1 2381530 2381531 rs11805063 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL, 2 C,G, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 603 chr1 2381567 2381568 rs867810 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1410.000000,3598.000000, 0.281550,0.718450, maf-5-some-pop,maf-5-all-pops 603 chr1 2381621 2381622 rs867809 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2659.000000,2349.000000, 0.530950,0.469050, maf-5-some-pop,maf-5-all-pops 603 chr1 2381980 2381981 rs4999500 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 3694.000000,1314.000000, 0.737620,0.262380, maf-5-some-pop,maf-5-all-pops 603 chr1 2382128 2382129 rs548938888 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 603 chr1 2382152 2382152 rs575890066 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,C, 4460.000000,548.000000, 0.890575,0.109425, 603 chr1 2382271 2382272 rs72915780 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB, 2 A,C, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 603 chr1 2383038 2383039 rs10752743 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1409.000000,3599.000000, 0.281350,0.718650, maf-5-some-pop,maf-5-all-pops 603 chr1 2383072 2383073 rs114535771 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4942.000000,66.000000, 0.986821,0.013179, 603 chr1 2383091 2383092 rs79970356 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3953.000000,1055.000000, 0.789337,0.210663, maf-5-some-pop,maf-5-all-pops 603 chr1 2383330 2383331 rs184403610 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 603 chr1 2383347 2383348 rs79439154 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 603 chr1 2383487 2383488 rs11804859 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 603 chr1 2383755 2383756 rs10797425 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2338.000000,2670.000000, 0.466853,0.533147, maf-5-some-pop,maf-5-all-pops 603 chr1 2383945 2383946 rs12075281 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 603 chr1 2383992 2383993 rs12075291 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 603 chr1 2384016 2384017 rs12078607 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop,maf-5-all-pops 603 chr1 2384047 2384048 rs72644626 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 603 chr1 2384107 2384108 rs10797426 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3571.000000,1437.000000, 0.713059,0.286941, maf-5-some-pop,maf-5-all-pops 603 chr1 2384172 2384173 rs78282920 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 982.000000,4026.000000, 0.196086,0.803914, maf-5-some-pop 603 chr1 2384261 2384262 rs115326034 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop,maf-5-all-pops 603 chr1 2384494 2384495 rs72915783 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 227.000000,4781.000000, 0.045327,0.954673, maf-5-some-pop,maf-5-all-pops 603 chr1 2384532 2384533 rs12725334 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ENSEMBL,JMKIDD_LAB,SSAHASNP, 2 A,T, 4937.000000,71.000000, 0.985823,0.014177, 603 chr1 2384623 2384624 rs12725489 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4269.000000,739.000000, 0.852436,0.147564, maf-5-some-pop,maf-5-all-pops 603 chr1 2384634 2384635 rs146827074 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 603 chr1 2385380 2385405 rs540349582 0 + GTGTGGGGGCCTCTGAGAGCCGAGT GTGTGGGGGCCTCTGAGAGCCGAGT -/GTGTGGGGGCCTCTGAGAGCCGAGT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GTGTGGGGGCCTCTGAGAGCCGAGT, 81.000000,4927.000000, 0.016174,0.983826, 603 chr1 2385426 2385427 rs555973411 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 603 chr1 2386396 2386397 rs12079344 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 603 chr1 2386424 2386425 rs78128505 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, 603 chr1 2386610 2386611 rs72644627 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 603 chr1 2387100 2387101 rs4648845 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1886.000000,3122.000000, 0.376597,0.623403, maf-5-some-pop,maf-5-all-pops 603 chr1 2387133 2387134 rs76122157 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 603 chr1 2387268 2387269 rs61763911 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1310.000000,3698.000000, 0.261581,0.738419, maf-5-some-pop,maf-5-all-pops 603 chr1 2387353 2387354 rs115097670 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 603 chr1 2387714 2387715 rs12037821 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4233.000000,775.000000, 0.845248,0.154752, maf-5-some-pop,maf-5-all-pops 603 chr1 2387827 2387828 rs12734526 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop 603 chr1 2387912 2387913 rs12742224 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4040.000000,968.000000, 0.806709,0.193291, maf-5-some-pop,maf-5-all-pops 603 chr1 2388108 2388109 rs115845026 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 603 chr1 2388313 2388314 rs115334054 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 603 chr1 2388384 2388385 rs71630978 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop 603 chr1 2388822 2388823 rs12078416 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1120.000000,3888.000000, 0.223642,0.776358, maf-5-some-pop,maf-5-all-pops 603 chr1 2389151 2389152 rs4648846 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 1737.000000,3271.000000, 0.346845,0.653155, maf-5-some-pop,maf-5-all-pops 603 chr1 2389233 2389234 rs72644628 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 603 chr1 2389318 2389319 rs5772068 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 4 1000GENOMES,BL,HUMANGENOME_JCVI,SSMP, 2 -,A, 1789.000000,3219.000000, 0.357228,0.642772, 603 chr1 2389375 2389376 rs77238314 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 603 chr1 2389585 2389586 rs114885982 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 603 chr1 2389710 2389711 rs76867397 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop,maf-5-all-pops 603 chr1 2389844 2389845 rs35037470 0 - G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 603 chr1 2390132 2390133 rs77381203 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop 603 chr1 2390148 2390149 rs72915786 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop,maf-5-all-pops 603 chr1 2390188 2390189 rs115515656 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 603 chr1 2390330 2390331 rs10910077 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1736.000000,3272.000000, 0.346645,0.653355, maf-5-some-pop,maf-5-all-pops 603 chr1 2390332 2390333 rs57308157 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 G,T, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop,maf-5-all-pops 603 chr1 2390352 2390353 rs11806740 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 603 chr1 2390413 2390415 rs150690037 0 + TC TC -/TC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,TC, 162.000000,4846.000000, 0.032348,0.967652, 603 chr1 2390469 2390470 rs201652991 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 -,C, 66.000000,4942.000000, 0.013179,0.986821, 603 chr1 2390587 2390588 rs10910078 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3406.000000,1602.000000, 0.680112,0.319888, maf-5-some-pop,maf-5-all-pops 603 chr1 2390607 2390608 rs142631342 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 603 chr1 2390614 2390615 rs57096636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,PJP,TISHKOFF, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, maf-5-some-pop,maf-5-all-pops 603 chr1 2390649 2390650 rs74049262 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 489.000000,4519.000000, 0.097644,0.902356, maf-5-some-pop,maf-5-all-pops 603 chr1 2390714 2390715 rs61277936 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 C,G, 1578.000000,3430.000000, 0.315096,0.684904, maf-5-some-pop,maf-5-all-pops 603 chr1 2390775 2390776 rs529581078 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 603 chr1 2390958 2390959 rs111615914 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,GMI,SSMP, 2 C,G, 3505.000000,1503.000000, 0.699880,0.300120, 603 chr1 2391054 2391055 rs184531020 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4892.000000,116.000000, 0.976837,0.023163, 603 chr1 2391073 2391074 rs61763917 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI, 2 G,T, 2402.000000,2606.000000, 0.479633,0.520367, maf-5-some-pop,maf-5-all-pops 603 chr1 2391366 2391367 rs16824399 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1475.000000,3533.000000, 0.294529,0.705471, maf-5-some-pop,maf-5-all-pops 603 chr1 2391381 2391382 rs75169856 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,G, 4944.000000,64.000000, 0.987220,0.012780, 603 chr1 2391464 2391465 rs113534725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 603 chr1 2391477 2391478 rs116811735 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 603 chr1 2391560 2391561 rs34732885 0 - C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 603 chr1 2391890 2391891 rs59168189 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 417.000000,4591.000000, 0.083267,0.916733, maf-5-some-pop,maf-5-all-pops 603 chr1 2392647 2392648 rs2477686 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop,microattr-tpa 603 chr1 2392770 2392771 rs79944845 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 603 chr1 2393309 2393310 rs536057180 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 300.000000,4708.000000, 0.059904,0.940096, 603 chr1 2393456 2393457 rs145063823 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 603 chr1 2393561 2393562 rs117585233 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4508.000000,500.000000, 0.900160,0.099840, maf-5-some-pop,maf-5-all-pops 603 chr1 2393681 2393682 rs115781740 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4947.000000,61.000000, 0.987819,0.012180, 603 chr1 2393809 2393810 rs114344245 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4210.000000,798.000000, 0.840655,0.159345, maf-5-some-pop,maf-5-all-pops 603 chr1 2393832 2393833 rs115072175 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4308.000000,700.000000, 0.860224,0.139776, maf-5-some-pop 603 chr1 2393862 2393863 rs554179910 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4955.000000,53.000000, 0.989417,0.010583, 603 chr1 2393885 2393886 rs72644632 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,C, 60.000000,4948.000000, 0.011981,0.988019, 603 chr1 2393915 2393916 rs77131659 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,C, 488.000000,4520.000000, 0.097444,0.902556, 603 chr1 2393925 2393926 rs72644633 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,G, 4954.000000,54.000000, 0.989217,0.010783, 603 chr1 2394073 2394074 rs4648635 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3384.000000,1624.000000, 0.675719,0.324281, maf-5-some-pop,maf-5-all-pops 603 chr1 2394225 2394226 rs4648636 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop,maf-5-all-pops 603 chr1 2394317 2394318 rs116491828 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 603 chr1 2394502 2394503 rs116014396 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop,maf-5-all-pops 603 chr1 2394633 2394634 rs568153951 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 62.000000,4946.000000, 0.012380,0.987620, 603 chr1 2394647 2394648 rs10910079 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop 603 chr1 2394823 2394824 rs12728528 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 870.000000,4138.000000, 0.173722,0.826278, maf-5-some-pop,maf-5-all-pops 603 chr1 2395451 2395452 rs12040359 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3875.000000,1133.000000, 0.773762,0.226238, maf-5-some-pop,maf-5-all-pops 603 chr1 2395537 2395538 rs2477689 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,G, 3705.000000,1303.000000, 0.739816,0.260184, maf-5-some-pop,maf-5-all-pops 603 chr1 2395554 2395555 rs77387089 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 64.000000,4944.000000, 0.012780,0.987220, 603 chr1 2395562 2395563 rs2477690 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop,maf-5-all-pops 603 chr1 2395880 2395881 rs72644636 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 603 chr1 2396001 2396002 rs61317976 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop,maf-5-all-pops 603 chr1 2396274 2396275 rs72845400 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3875.000000,1133.000000, 0.773762,0.226238, maf-5-some-pop,maf-5-all-pops 603 chr1 2396453 2396454 rs2477691 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,SC_JCM,SC_SNP,TISHKOFF, 2 G,T, 4652.000000,356.000000, 0.928914,0.071086, maf-5-some-pop,maf-5-all-pops 603 chr1 2396673 2396674 rs146820126 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 603 chr1 2397228 2397229 rs72644638 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 A,C, 4950.000000,58.000000, 0.988419,0.011582, 603 chr1 2397282 2397283 rs185964635 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 603 chr1 2397364 2397365 rs76627757 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 4583.000000,425.000000, 0.915136,0.084864, maf-5-some-pop 603 chr1 2397530 2397531 rs80153752 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop 603 chr1 2397748 2397749 rs72845402 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1124.000000,3884.000000, 0.224441,0.775559, maf-5-some-pop,maf-5-all-pops 603 chr1 2397995 2397996 rs2477692 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2277.000000,2731.000000, 0.454673,0.545327, maf-5-some-pop,maf-5-all-pops 603 chr1 2398049 2398050 rs59660650 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1122.000000,3886.000000, 0.224042,0.775958, maf-5-some-pop,maf-5-all-pops 603 chr1 2398106 2398107 rs12042427 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3633.000000,1375.000000, 0.725439,0.274561, maf-5-some-pop,maf-5-all-pops 603 chr1 2398210 2398211 rs75257453 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, 603 chr1 2398375 2398376 rs2477693 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2276.000000,2732.000000, 0.454473,0.545527, maf-5-some-pop,maf-5-all-pops 603 chr1 2398411 2398412 rs115216442 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 603 chr1 2398863 2398864 rs34349643 0 - C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BGI,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 603 chr1 2398881 2398890 rs111524361 0 + CCTTCCTCA CCTTCCTCA -/CCTTCCTCA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,CCTTCCTCA, 2750.000000,2258.000000, 0.549121,0.450879, 603 chr1 2399130 2399131 rs145861808 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 603 chr1 2399401 2399402 rs72848508 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3930.000000,1078.000000, 0.784744,0.215256, maf-5-some-pop,maf-5-all-pops 603 chr1 2399603 2399604 rs2494630 0 - G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 603 chr1 2399613 2399614 rs2477695 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2270.000000,2738.000000, 0.453275,0.546725, maf-5-some-pop,maf-5-all-pops 603 chr1 2399931 2399932 rs375506000 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 603 chr1 2399958 2399959 rs548141995 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 603 chr1 2399961 2399962 rs561547583 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4477.000000,531.000000, 0.893970,0.106030, 603 chr1 2400299 2400300 rs72848513 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4738.000000,270.000000, 0.946086,0.053914, maf-5-some-pop,maf-5-all-pops 603 chr1 2400533 2400534 rs55780582 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3882.000000,1126.000000, 0.775160,0.224840, maf-5-some-pop,maf-5-all-pops 603 chr1 2400534 2400535 rs114908466 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 603 chr1 2400742 2400743 rs74049271 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop,maf-5-all-pops 603 chr1 2400804 2400805 rs2477696 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop 603 chr1 2401020 2401021 rs116519929 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 603 chr1 2401123 2401124 rs12095549 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, 603 chr1 2401226 2401227 rs114540621 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 603 chr1 2401363 2401364 rs4648637 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2183.000000,2825.000000, 0.435903,0.564097, maf-5-some-pop,maf-5-all-pops 603 chr1 2401371 2401372 rs12089296 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,SC_SNP,TISHKOFF, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, 603 chr1 2401472 2401473 rs145165360 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 73.000000,4935.000000, 0.014577,0.985423, 603 chr1 2401565 2401566 rs76494127 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 131.000000,4877.000000, 0.026158,0.973842, 603 chr1 2401667 2401668 rs79868541 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 603 chr1 2402004 2402005 rs143581233 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 603 chr1 2402125 2402126 rs79678910 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 603 chr1 2402191 2402192 rs151020175 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 603 chr1 2402366 2402367 rs2477697 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 603 chr1 2402618 2402619 rs2477698 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 603 chr1 2402636 2402637 rs74726941 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 603 chr1 2403853 2403854 rs10910080 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 2137.000000,2871.000000, 0.426717,0.573283, maf-5-some-pop,maf-5-all-pops 603 chr1 2404110 2404111 rs79284614 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 603 chr1 2404306 2404307 rs75509160 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4493.000000,515.000000, 0.897165,0.102835, maf-5-some-pop,maf-5-all-pops 603 chr1 2404320 2404321 rs10910081 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,C, 1129.000000,3879.000000, 0.225439,0.774561, maf-5-some-pop,maf-5-all-pops 603 chr1 2404425 2404426 rs116124934 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 64.000000,4944.000000, 0.012780,0.987220, 603 chr1 2404510 2404511 rs192317600 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 4946.000000,62.000000, 0.987620,0.012380, 603 chr1 2404995 2404996 rs116066576 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 603 chr1 2405681 2405682 rs528337829 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 85.000000,4923.000000, 0.016973,0.983027, 603 chr1 2405828 2405829 rs368803848 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 603 chr1 2406103 2406104 rs114634746 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4957.000000,51.000000, 0.989816,0.010184, 603 chr1 2406365 2406366 rs13376340 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,ILLUMINA,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 603 chr1 2406645 2406646 rs60277530 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 603 chr1 2406656 2406657 rs13376347 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,WUGSC_SSAHASNP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 603 chr1 2406757 2406766 rs148882156 0 + GAGCCAGTA GAGCCAGTA -/GAGCCAGTA genomic deletion unknown 0 0 near-gene-5 range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GAGCCAGTA, 150.000000,4858.000000, 0.029952,0.970048, 603 chr1 2406886 2406887 rs13376356 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4333.000000,675.000000, 0.865216,0.134784, maf-5-some-pop,maf-5-all-pops 603 chr1 2407780 2407781 rs78504402 0 + C C C/T genomic single unknown 0 0 untranslated-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4852.000000,156.000000, 0.968850,0.031150, maf-5-some-pop,maf-5-all-pops 603 chr1 2408109 2408110 rs79733537 0 + G G C/G genomic single unknown 0 0 missense exact 1 4 1000GENOMES,BGI,ILLUMINA,SSMP, 2 C,G, 60.000000,4948.000000, 0.011981,0.988019, 603 chr1 2408378 2408379 rs191854920 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 58.000000,4950.000000, 0.011582,0.988419, 603 chr1 2408833 2408834 rs11588930 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 A,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop 603 chr1 2409234 2409235 rs12045425 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,GMI,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop 603 chr1 2409359 2409360 rs59417818 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2946.000000,2062.000000, 0.588259,0.411741, maf-5-some-pop,maf-5-all-pops 603 chr1 2409382 2409383 rs12742193 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 610.000000,4398.000000, 0.121805,0.878195, maf-5-some-pop 603 chr1 2409856 2409858 rs558435982 0 + TC TC -/TC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TC, 64.000000,4944.000000, 0.012780,0.987220, 603 chr1 2409891 2409892 rs12727342 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1467.000000,3541.000000, 0.292931,0.707069, maf-5-some-pop,maf-5-all-pops 603 chr1 2410710 2410711 rs41315660 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SI_EXO,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, 603 chr1 2410788 2410789 rs11799501 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SI_EXO,SSMP, 2 C,T, 1960.000000,3048.000000, 0.391374,0.608626, maf-5-some-pop,maf-5-all-pops 603 chr1 2411126 2411127 rs79472989 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 603 chr1 2411450 2411451 rs10797428 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 1720.000000,3288.000000, 0.343450,0.656550, maf-5-some-pop,maf-5-all-pops 603 chr1 2411522 2411523 rs41315668 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop 603 chr1 2411788 2411789 rs112904948 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 603 chr1 2412120 2412121 rs78010027 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 79.000000,4929.000000, 0.015775,0.984225, 603 chr1 2412278 2412279 rs4648638 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1813.000000,3195.000000, 0.362021,0.637979, maf-5-some-pop,maf-5-all-pops 603 chr1 2412292 2412293 rs12731186 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4436.000000,572.000000, 0.885783,0.114217, maf-5-some-pop 603 chr1 2412985 2412986 rs113261179 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 603 chr1 2413148 2413149 rs112790738 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 603 chr1 2414895 2414896 rs75732251 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 603 chr1 2414927 2414928 rs4995304 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 3024.000000,1984.000000, 0.603834,0.396166, maf-5-some-pop,maf-5-all-pops 603 chr1 2415107 2415108 rs114637672 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, 603 chr1 2415190 2415191 rs563485051 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 923.000000,4085.000000, 0.184305,0.815695, 603 chr1 2415217 2415218 rs114357604 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 281.000000,77.000000, 0.784916,0.215084, maf-5-some-pop,maf-5-all-pops 603 chr1 2415275 2415276 rs367622398 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,SSMP,WARNICH_LAB, 2 -,T, 2175.000000,2833.000000, 0.434305,0.565695, 603 chr1 2415315 2415315 rs368334294 0 + - - -/G genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,G, 4201.000000,807.000000, 0.838858,0.161142, 603 chr1 2415359 2415360 rs181041122 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 2901.000000,2107.000000, 0.579273,0.420727, 603 chr1 2415383 2415384 rs190119998 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 2797.000000,2211.000000, 0.558506,0.441494, 603 chr1 2415424 2415425 rs76224752 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,EVA-GONL,SSMP, 2 C,G, 2969.000000,2039.000000, 0.592851,0.407149, 603 chr1 2415446 2415447 rs112353831 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,G, 3214.000000,1794.000000, 0.641773,0.358227, 603 chr1 2415478 2415479 rs150975652 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 4934.000000,74.000000, 0.985224,0.014776, 603 chr1 2415496 2415497 rs61763948 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 3032.000000,1976.000000, 0.605431,0.394569, maf-5-some-pop,maf-5-all-pops 603 chr1 2415544 2415545 rs114856389 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 603 chr1 2415674 2415675 rs58328795 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,HGSV,SSMP, 2 C,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 603 chr1 2415882 2415883 rs116547422 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 603 chr1 2416356 2416357 rs4648639 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3021.000000,1987.000000, 0.603235,0.396765, maf-5-some-pop,maf-5-all-pops 603 chr1 2416387 2416388 rs116318677 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 603 chr1 2416662 2416662 rs143934264 0 + - - -/GCTCTCTGGAC genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BL,LUNTER, 2 -,GCTCTCTGGAC, 1041.000000,3967.000000, 0.207867,0.792133, 603 chr1 2417461 2417462 rs72848518 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 603 chr1 2417929 2417930 rs114871065 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 106.000000,4902.000000, 0.021166,0.978834, 603 chr1 2417957 2417958 rs4648640 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3035.000000,1973.000000, 0.606030,0.393970, maf-5-some-pop,maf-5-all-pops 603 chr1 2418624 2418625 rs7512269 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4408.000000,600.000000, 0.880192,0.119808, maf-5-some-pop 603 chr1 2418890 2418890 rs111260262 0 + - - -/G genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,G, 4957.000000,51.000000, 0.989816,0.010184, 603 chr1 2418934 2418935 rs10910082 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1873.000000,3135.000000, 0.374002,0.625998, maf-5-some-pop,maf-5-all-pops 603 chr1 2419414 2419415 rs78283022 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4941.000000,67.000000, 0.986621,0.013379, 603 chr1 2420306 2420307 rs141748073 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 603 chr1 2420589 2420590 rs10752744 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4351.000000,657.000000, 0.868810,0.131190, maf-5-some-pop 603 chr1 2420912 2420913 rs6668720 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1633.000000,3375.000000, 0.326078,0.673922, maf-5-some-pop,maf-5-all-pops 603 chr1 2421120 2421121 rs12064950 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, 603 chr1 2421474 2421475 rs557123359 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4942.000000,66.000000, 0.986821,0.013179, 603 chr1 2421840 2421841 rs113799870 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 603 chr1 2421857 2421858 rs112280535 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 603 chr1 2422613 2422614 rs2477699 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3766.000000,1242.000000, 0.751997,0.248003, maf-5-some-pop,maf-5-all-pops 603 chr1 2422775 2422776 rs61745551 0 + T T G/T genomic single by-frequency 0.104938 0.20361 splice-5 exact 1 1 CORNELL, 2 G,T, 3.000000,51.000000, 0.055556,0.944444, maf-5-some-pop,maf-5-all-pops 603 chr1 2422960 2422961 rs115996135 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 603 chr1 2423259 2423260 rs143957030 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 603 chr1 2423362 2423363 rs12091002 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 138.000000,4870.000000, 0.027556,0.972444, 603 chr1 2423417 2423418 rs2477700 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,SC_JCM,TISHKOFF, 2 A,G, 165.000000,4843.000000, 0.032947,0.967053, 603 chr1 2423565 2423566 rs3001349 0 - C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 603 chr1 2424025 2424026 rs116318450 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 603 chr1 2424318 2424319 rs75646104 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, 603 chr1 2424416 2424417 rs2477701 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4262.000000,746.000000, 0.851038,0.148962, maf-5-some-pop 603 chr1 2424710 2424711 rs115010414 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 603 chr1 2424764 2424765 rs12409875 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1781.000000,3227.000000, 0.355631,0.644369, maf-5-some-pop,maf-5-all-pops 603 chr1 2424893 2424894 rs2477702 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2189.000000,2819.000000, 0.437101,0.562899, maf-5-some-pop,maf-5-all-pops 603 chr1 2425117 2425118 rs188470846 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 603 chr1 2425991 2425992 rs2477703 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 827.000000,4181.000000, 0.165136,0.834864, maf-5-some-pop 603 chr1 2426247 2426248 rs41307848 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,NHLBI-ESP,SI_EXO,SSMP, 2 C,G, 67.000000,4941.000000, 0.013379,0.986621, 603 chr1 2426312 2426313 rs79885852 0 + G G A/G genomic single unknown 0 0 missense exact 1 7 1000GENOMES,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, 603 chr1 2426478 2426478 rs550652248 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 4950.000000,58.000000, 0.988419,0.011582, 603 chr1 2426597 2426598 rs16825139 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,G, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 603 chr1 2426688 2426689 rs12022393 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3107.000000,1901.000000, 0.620407,0.379593, maf-5-some-pop,maf-5-all-pops 603 chr1 2427339 2427340 rs3762442 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2236.000000,2772.000000, 0.446486,0.553514, maf-5-some-pop,maf-5-all-pops 603 chr1 2427367 2427368 rs3762443 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1913.000000,3095.000000, 0.381989,0.618011, maf-5-some-pop,maf-5-all-pops 603 chr1 2427792 2427793 rs2477704 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,SC_JCM,SC_SNP, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, maf-5-some-pop,maf-5-all-pops 603 chr1 2428483 2428484 rs144425210 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 603 chr1 2428718 2428719 rs2477705 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_JCM, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 603 chr1 2428873 2428874 rs2477706 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop 603 chr1 2429721 2429722 rs77150946 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop 603 chr1 2429799 2429800 rs9424315 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_SNP, 2 A,C, 59.000000,4949.000000, 0.011781,0.988219, 603 chr1 2430469 2430470 rs150434758 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4939.000000,69.000000, 0.986222,0.013778, 603 chr1 2430870 2430871 rs112080027 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 603 chr1 2431056 2431057 rs2477707 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3038.000000,1970.000000, 0.606629,0.393371, maf-5-some-pop,maf-5-all-pops 603 chr1 2431098 2431099 rs145549953 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 603 chr1 2431101 2431102 rs138167803 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 603 chr1 2431374 2431375 rs111550591 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 56.000000,4952.000000, 0.011182,0.988818, 603 chr1 2432195 2432196 rs117777962 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 603 chr1 2432330 2432331 rs4648641 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,C, 1738.000000,3270.000000, 0.347045,0.652955, maf-5-some-pop,maf-5-all-pops 603 chr1 2432463 2432464 rs2477708 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,C, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,maf-5-all-pops 603 chr1 2432534 2432535 rs76313530 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 603 chr1 2432748 2432749 rs12096577 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 1884.000000,3124.000000, 0.376198,0.623802, maf-5-some-pop,maf-5-all-pops 603 chr1 2432761 2432762 rs4648642 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1710.000000,3298.000000, 0.341454,0.658546, maf-5-some-pop 603 chr1 2433899 2433900 rs12736998 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 3106.000000,1902.000000, 0.620208,0.379792, maf-5-some-pop,maf-5-all-pops 603 chr1 2433973 2433974 rs141214636 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 603 chr1 2434660 2434661 rs2477709 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SC_JCM,SC_SNP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 603 chr1 2435737 2435738 rs114371513 0 + G G A/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 603 chr1 2436255 2436256 rs138038983 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,CLINSEQ_SNP,EVA-GONL,NHLBI-ESP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 603 chr1 2436302 2436303 rs79405490 0 + A A A/C genomic single unknown 0 0 missense exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,C, 4936.000000,72.000000, 0.985623,0.014377, 603 chr1 2436403 2436404 rs113392853 0 + G G C/G genomic single unknown 0 0 missense exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,G, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop 603 chr1 2436777 2436778 rs12219 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,ABI,BUSHMAN,CGAP-GAI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,LEE,PJP,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP,YUSUKE, 2 A,G, 2775.000000,2233.000000, 0.554113,0.445887, maf-5-some-pop,maf-5-all-pops 603 chr1 2437753 2437754 rs79767453 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, 603 chr1 2437894 2437895 rs12025298 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1883.000000,3125.000000, 0.375998,0.624002, maf-5-some-pop,maf-5-all-pops 603 chr1 2438166 2438167 rs12744097 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops 603 chr1 2438306 2438307 rs6686306 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP,TISHKOFF, 2 C,T, 3089.000000,1919.000000, 0.616813,0.383187, maf-5-some-pop,maf-5-all-pops 603 chr1 2438316 2438338 rs538016105 0 + GGGAAAGGGCTGGGGAAGGGCT GGGAAAGGGCTGGGGAAGGGCT -/GGGAAAGGGCTGGGGAAGGGCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GGGAAAGGGCTGGGGAAGGGCT, 57.000000,4951.000000, 0.011382,0.988618, 603 chr1 2438392 2438393 rs6686404 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3090.000000,1918.000000, 0.617013,0.382987, maf-5-some-pop,maf-5-all-pops 603 chr1 2438611 2438612 rs58974156 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3090.000000,1918.000000, 0.617013,0.382987, maf-5-some-pop,maf-5-all-pops 603 chr1 2438762 2438763 rs2477710 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_JCM, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 603 chr1 2438767 2438768 rs12725663 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1112.000000,3896.000000, 0.222045,0.777955, maf-5-some-pop 603 chr1 2438827 2438828 rs72848535 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2765.000000,2243.000000, 0.552117,0.447883, maf-5-some-pop,maf-5-all-pops 603 chr1 2438865 2438866 rs115836208 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, 603 chr1 2438981 2438982 rs1107686 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3011.000000,1997.000000, 0.601238,0.398762, maf-5-some-pop,maf-5-all-pops 603 chr1 2439190 2439191 rs1107685 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3074.000000,1934.000000, 0.613818,0.386182, maf-5-some-pop,maf-5-all-pops 603 chr1 2439416 2439417 rs116519409 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 603 chr1 2439680 2439681 rs4648559 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop 603 chr1 2439684 2439685 rs3791180 0 + G G C/G genomic single unknown 0 0 near-gene-3 exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 1907.000000,3101.000000, 0.380791,0.619209, maf-5-some-pop,maf-5-all-pops 603 chr1 2439928 2439929 rs115566946 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 603 chr1 2440051 2440051 rs57126490 0 + - - -/TA genomic insertion unknown 0 0 untranslated-3 between 1 3 1000GENOMES,GMI,LUNTER, 2 -,TA, 3426.000000,1582.000000, 0.684105,0.315895, 603 chr1 2440674 2440675 rs2477712 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 603 chr1 2441019 2441020 rs75875515 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop,maf-5-all-pops 603 chr1 2441835 2441835 rs60181825 0 + - - -/CCGATCGGC genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,LUNTER, 2 -,CCGATCGGC, 2698.000000,2310.000000, 0.538738,0.461262, 603 chr1 2442373 2442374 rs7543665 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1923.000000,3085.000000, 0.383986,0.616014, maf-5-some-pop,maf-5-all-pops 603 chr1 2442724 2442725 rs75446445 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 A,C, 73.000000,4935.000000, 0.014577,0.985423, 603 chr1 2443318 2443319 rs12062638 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 193.000000,4815.000000, 0.038538,0.961462, maf-5-some-pop 603 chr1 2443654 2443655 rs733307 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1311.000000,3697.000000, 0.261781,0.738219, maf-5-some-pop,maf-5-all-pops 603 chr1 2444413 2444414 rs7535528 0 + G G A/G genomic single unknown 0 0 ncRNA,missense exact 1 21 1000GENOMES,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1130.000000,3878.000000, 0.225639,0.774361, maf-5-some-pop 603 chr1 2444469 2444470 rs114254488 0 + C C C/T genomic single unknown 0 0 coding-synon,ncRNA exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, 603 chr1 2444642 2444643 rs2494613 0 - G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_JCM,SC_SNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 603 chr1 2444934 2444935 rs75407712 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 84.000000,4924.000000, 0.016773,0.983227, maf-5-some-pop 603 chr1 2444952 2444953 rs76591030 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 603 chr1 2444985 2444986 rs114439409 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 603 chr1 2446329 2446330 rs2477713 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2686.000000,2322.000000, 0.536342,0.463658, maf-5-some-pop,maf-5-all-pops 603 chr1 2446599 2446600 rs2477714 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_JCM, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 603 chr1 2446989 2446990 rs12068466 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop 603 chr1 2447290 2447291 rs115004956 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 70.000000,4938.000000, 0.013978,0.986022, 603 chr1 2447814 2447815 rs146159587 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, 603 chr1 2447909 2447910 rs3791181 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1930.000000,3078.000000, 0.385383,0.614617, maf-5-some-pop,maf-5-all-pops 603 chr1 2448187 2448188 rs3791182 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3076.000000,1932.000000, 0.614217,0.385783, maf-5-some-pop,maf-5-all-pops 603 chr1 2448560 2448561 rs72848539 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 2119.000000,2889.000000, 0.423123,0.576877, maf-5-some-pop,maf-5-all-pops 603 chr1 2448963 2448964 rs116127768 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, 603 chr1 2449191 2449192 rs7548829 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 193.000000,4815.000000, 0.038538,0.961462, maf-5-some-pop 603 chr1 2449352 2449353 rs7520135 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop 603 chr1 2449878 2449879 rs12076695 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop,maf-5-all-pops 603 chr1 2449923 2449924 rs116387284 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,NHLBI-ESP,SSMP, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 603 chr1 2450128 2450129 rs374874352 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 603 chr1 2450501 2450502 rs113492448 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 603 chr1 2451615 2451616 rs115031359 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 603 chr1 2452443 2452444 rs4648643 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2880.000000,2128.000000, 0.575080,0.424920, maf-5-some-pop,maf-5-all-pops 603 chr1 2452814 2452815 rs7537682 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop 603 chr1 2452978 2452979 rs12073504 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP,SSMP, 2 C,G, 4895.000000,113.000000, 0.977436,0.022564, microattr-tpa 603 chr1 2453162 2453163 rs78763061 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 7 1000GENOMES,BGI,CLINSEQ_SNP,GMI,ILLUMINA,NHLBI-ESP,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 603 chr1 2453757 2453758 rs77521125 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB, 2 C,G, 4932.000000,76.000000, 0.984824,0.015176, 603 chr1 2453811 2453812 rs4648644 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1932.000000,3076.000000, 0.385783,0.614217, maf-5-some-pop,maf-5-all-pops 603 chr1 2454071 2454074 rs149353037 0 + AAC AAC -/AAC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,AAC, 188.000000,4820.000000, 0.037540,0.962460, 603 chr1 2454203 2454204 rs11583446 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV,ILLUMINA-UK,SSAHASNP,SSMP, 2 A,G, 2449.000000,2559.000000, 0.489018,0.510982, 603 chr1 2454217 2454218 rs2494629 0 - G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,GMI,HGSV,ILLUMINA-UK,SC_JCM,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 603 chr1 2454253 2454254 rs74047704 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,GMI,ILLUMINA-UK, 2 C,T, 1801.000000,3207.000000, 0.359625,0.640375, 603 chr1 2454314 2454315 rs72848544 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP, 2 A,G, 2241.000000,2767.000000, 0.447484,0.552516, 603 chr1 2454318 2454319 rs113031743 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,GMI,MPI_MOLGEN,SSMP, 2 C,T, 3217.000000,1791.000000, 0.642372,0.357628, 603 chr1 2454447 2454448 rs115520188 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,C, 113.000000,4895.000000, 0.022564,0.977436, 603 chr1 2454682 2454683 rs113122996 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 603 chr1 2454929 2454930 rs2494624 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 603 chr1 2455632 2455633 rs10910086 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop 603 chr1 2456815 2456816 rs4648560 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 349.000000,4659.000000, 0.069688,0.930312, maf-5-some-pop,maf-5-all-pops 603 chr1 2456867 2456868 rs148450907 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 603 chr1 2456953 2456954 rs58033434 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 78.000000,4930.000000, 0.015575,0.984425, 603 chr1 2458009 2458010 rs143275045 0 + G G C/G genomic single unknown 0 0 ncRNA,missense exact 1 5 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,NHLBI-ESP, 2 C,G, 63.000000,4945.000000, 0.012580,0.987420, 603 chr1 2459312 2459313 rs35106972 0 - G G C/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 603 chr1 2459683 2459684 rs145423218 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 603 chr1 2459896 2459897 rs56287708 0 + G G A/G genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 603 chr1 2460563 2460564 rs115638831 0 + C C C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 603 chr1 2460607 2460608 rs72644658 0 + A A A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 603 chr1 2461206 2461207 rs148077566 0 + G G A/G genomic single unknown 0 0 intron,missense exact 1 1 1000GENOMES, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 603 chr1 2461570 2461571 rs150791867 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 603 chr1 2461687 2461688 rs546720624 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 603 chr1 2462178 2462179 rs138111810 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 603 chr1 2462182 2462183 rs114141745 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 603 chr1 2462235 2462236 rs116467216 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,ILLUMINA, 2 G,T, 4952.000000,56.000000, 0.988818,0.011182, 603 chr1 2462381 2462382 rs115078120 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 603 chr1 2462737 2462738 rs116237552 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 603 chr1 2462817 2462818 rs2494603 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4180.000000,828.000000, 0.834665,0.165335, maf-5-some-pop 603 chr1 2462834 2462835 rs10910087 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1131.000000,3877.000000, 0.225839,0.774161, maf-5-some-pop 603 chr1 2463413 2463414 rs11583602 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1696.000000,3312.000000, 0.338658,0.661342, maf-5-some-pop,maf-5-all-pops 603 chr1 2463748 2463749 rs4648645 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3290.000000,1718.000000, 0.656949,0.343051, maf-5-some-pop,maf-5-all-pops 603 chr1 2464044 2464045 rs6694195 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3862.000000,1146.000000, 0.771166,0.228834, maf-5-some-pop 603 chr1 2464566 2464567 rs12406506 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1154.000000,3854.000000, 0.230431,0.769569, maf-5-some-pop 603 chr1 2464751 2464752 rs3001338 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_JCM,SC_SNP, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 603 chr1 2465068 2465069 rs151114062 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 603 chr1 2465094 2465095 rs11585747 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3276.000000,1732.000000, 0.654153,0.345847, maf-5-some-pop,maf-5-all-pops 603 chr1 2465143 2465144 rs9803764 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop 603 chr1 2465328 2465329 rs11584295 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 603 chr1 2465335 2465336 rs143435438 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,LUNTER, 2 -,A, 111.000000,4897.000000, 0.022164,0.977835, 603 chr1 2465354 2465355 rs72848552 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3010.000000,1998.000000, 0.601038,0.398962, maf-5-some-pop,maf-5-all-pops 603 chr1 2465670 2465671 rs4648561 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4140.000000,868.000000, 0.826677,0.173323, maf-5-some-pop 603 chr1 2465791 2465792 rs3001339 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 809.000000,4199.000000, 0.161542,0.838458, maf-5-some-pop 603 chr1 2465911 2465912 rs6661956 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1094.000000,3914.000000, 0.218450,0.781550, maf-5-some-pop 603 chr1 2465973 2465974 rs143257148 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 603 chr1 2466293 2466294 rs111436370 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 4909.000000,99.000000, 0.980232,0.019768, 603 chr1 2466345 2466346 rs76629401 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 603 chr1 2466424 2466425 rs2985860 0 - T T A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1.000000,14.000000, 0.066667,0.933333, maf-5-some-pop,maf-5-all-pops 603 chr1 2466452 2466453 rs3001340 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,SC_JCM,SC_SNP,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 603 chr1 2466632 2466633 rs2494606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 788.000000,4220.000000, 0.157348,0.842652, maf-5-some-pop 603 chr1 2466651 2466652 rs74047707 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 603 chr1 2467126 2467127 rs76250408 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, 603 chr1 2467669 2467670 rs2477716 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4616.000000,392.000000, 0.921725,0.078275, maf-5-some-pop 603 chr1 2467722 2467723 rs77407313 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 4919.000000,89.000000, 0.982228,0.017772, 603 chr1 2468176 2468177 rs2477717 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 326.000000,4682.000000, 0.065096,0.934904, 603 chr1 2468786 2468787 rs139030263 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,T, 326.000000,4682.000000, 0.065096,0.934904, 603 chr1 2468856 2468857 rs11807884 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop,maf-5-all-pops 603 chr1 2469206 2469207 rs2495377 0 - C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 603 chr1 2469511 2469512 rs3001341 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop,maf-5-all-pops 603 chr1 2469593 2469594 rs151060179 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 603 chr1 2469691 2469692 rs74047710 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop,maf-5-all-pops 603 chr1 2469835 2469836 rs150219346 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4896.000000,112.000000, 0.977636,0.022364, 603 chr1 2470375 2470376 rs112997882 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 603 chr1 2470668 2470669 rs370499272 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, 603 chr1 2470671 2470671 rs112734447 0 + - - -/CC genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,CC, 2178.000000,2830.000000, 0.434904,0.565096, 603 chr1 2470674 2470675 rs555092675 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 2831.000000,2177.000000, 0.565296,0.434704, 603 chr1 2470679 2470680 rs572740622 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 2830.000000,2178.000000, 0.565096,0.434904, 603 chr1 2470681 2470681 rs200003877 0 + - - -/GCA genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,GCA, 2185.000000,2823.000000, 0.436302,0.563698, 603 chr1 2470844 2470845 rs2495373 0 - C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 603 chr1 2470847 2470848 rs12042279 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2831.000000,2177.000000, 0.565296,0.434704, maf-5-some-pop,maf-5-all-pops 603 chr1 2471744 2471745 rs2495371 0 - G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 603 chr1 2471954 2471955 rs2495370 0 - A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 603 chr1 2472089 2472090 rs2477718 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,SSMP,WI_SSAHASNP, 2 C,T, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop,maf-5-all-pops 603 chr1 2472143 2472144 rs4487972 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_JCM,SSMP, 2 C,G, 2843.000000,2165.000000, 0.567692,0.432308, maf-5-some-pop,maf-5-all-pops 603 chr1 2472369 2472370 rs140280658 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 603 chr1 2472433 2472434 rs545086572 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 603 chr1 2472434 2472435 rs558657239 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, 603 chr1 2474475 2474476 rs11809463 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 603 chr1 2474683 2474683 rs60257328 0 + - - -/GGTA genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,HGSV, 2 -,GGTA, 4689.000000,319.000000, 0.936302,0.063698, 603 chr1 2475112 2475113 rs78547790 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,EVA-GONL, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop,maf-5-all-pops 603 chr1 2475211 2475212 rs10797429 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2848.000000,2160.000000, 0.568690,0.431310, maf-5-some-pop,maf-5-all-pops 603 chr1 2475377 2475378 rs140370160 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 603 chr1 2475443 2475444 rs116175205 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop,maf-5-all-pops 603 chr1 2475473 2475474 rs55929178 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP, 2 C,T, 4533.000000,475.000000, 0.905152,0.094848, maf-5-some-pop,maf-5-all-pops 603 chr1 2475925 2475926 rs143066965 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 603 chr1 2476233 2476234 rs74047712 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop,maf-5-all-pops 603 chr1 2476498 2476499 rs138771391 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 603 chr1 2476783 2476784 rs76114118 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, 603 chr1 2477357 2477358 rs12097268 0 + T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,T, 2950.000000,2058.000000, 0.589058,0.410942, maf-5-some-pop,maf-5-all-pops 603 chr1 2477624 2477625 rs139454263 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 603 chr1 2477830 2477831 rs150702405 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, 603 chr1 2477928 2477929 rs551221016 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4896.000000,112.000000, 0.977636,0.022364, 603 chr1 2478022 2478023 rs7538698 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,G, 4824.000000,184.000000, 0.963259,0.036741, 603 chr1 2478510 2478511 rs2477678 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3165.000000,1843.000000, 0.631989,0.368011, maf-5-some-pop,maf-5-all-pops 603 chr1 2480245 2480246 rs568710798 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 595.000000,4413.000000, 0.118810,0.881190, 603 chr1 2480259 2480260 rs537692567 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 207.000000,4801.000000, 0.041334,0.958666, 603 chr1 2480336 2480337 rs10797430 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 169.000000,4839.000000, 0.033746,0.966254, maf-5-some-pop 603 chr1 2480366 2480367 rs542444186 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 603 chr1 2480422 2480423 rs151017091 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 603 chr1 2481109 2481110 rs185596616 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 603 chr1 2481701 2481702 rs115511887 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, 603 chr1 2482236 2482237 rs187957015 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 603 chr1 2482275 2482276 rs2477680 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_JCM,SSMP, 2 C,T, 73.000000,4935.000000, 0.014577,0.985423, 603 chr1 2482352 2482353 rs141581712 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4957.000000,51.000000, 0.989816,0.010184, 603 chr1 2482380 2482381 rs111273871 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 603 chr1 2482397 2482398 rs397839769 0 - T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_JCM, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 603 chr1 2482690 2482691 rs7537423 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, 603 chr1 2482994 2482995 rs377440806 0 + T T G/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 59.000000,4949.000000, 0.011781,0.988219, 603 chr1 2483030 2483031 rs146952073 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 603 chr1 2483078 2483079 rs138062451 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 603 chr1 2483140 2483141 rs140698623 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 603 chr1 2483269 2483270 rs3748825 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,YUSUKE, 2 C,T, 3071.000000,1937.000000, 0.613219,0.386781, maf-5-some-pop,maf-5-all-pops 603 chr1 2483297 2483298 rs2985858 0 - C C C/G genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 603 chr1 2483421 2483422 rs375931380 0 + A A A/C genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4949.000000,59.000000, 0.988219,0.011781, 603 chr1 2483560 2483561 rs377614941 0 + G G G/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SSMP, 2 G,T, 4935.000000,73.000000, 0.985423,0.014577, 603 chr1 2483749 2483750 rs138383888 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 603 chr1 2483839 2483840 rs7531865 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,HGSV,ILLUMINA,TISHKOFF,WI_SSAHASNP, 2 C,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop,maf-5-all-pops 603 chr1 2483878 2483879 rs114085685 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 603 chr1 2484111 2484112 rs146398520 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 603 chr1 2484440 2484441 rs546386685 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 603 chr1 2484448 2484449 rs138402263 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 2875.000000,2133.000000, 0.574081,0.425919, 603 chr1 2484664 2484665 rs142983783 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 603 chr1 2484747 2484748 rs146090614 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 3128.000000,1880.000000, 0.624601,0.375399, 603 chr1 2485018 2485019 rs576668235 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 603 chr1 2485734 2485735 rs142352960 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 603 chr1 2487662 2487663 rs2227312 0 + C C A/C genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 19 1000GENOMES,ABI,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GENAISSANCE,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 3001.000000,2007.000000, 0.599241,0.400759, maf-5-some-pop,maf-5-all-pops 603 chr1 2487882 2487883 rs2234153 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-5 exact 1 3 1000GENOMES,EGP_SNPS,GENAISSANCE, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 603 chr1 2488152 2488153 rs4870 0 + A A A/G genomic single unknown 0 0 intron,ncRNA,missense exact 1 24 1000GENOMES,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,DEBNICK,EGP_SNPS,EVA-GONL,EXOME_CHIP,GENAISSANCE,GMI,HGSV,ILLUMINA,JMKIDD_LAB,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SEQUENOM,SSMP, 2 A,G, 1929.000000,3079.000000, 0.385184,0.614816, maf-5-some-pop,maf-5-all-pops 603 chr1 2488397 2488398 rs142945923 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, 603 chr1 2488481 2488491 rs199552681 0 + GTCTCTGGGC GTCTCTGGGC -/GTCTCTGGGC genomic deletion unknown 0 0 intron,near-gene-5 range 1 2 1000GENOMES,EVA-GONL, 2 -,GTCTCTGGGC, 187.000000,4821.000000, 0.037340,0.962660, 603 chr1 2488607 2488608 rs1886730 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3234.000000,1774.000000, 0.645767,0.354233, maf-5-some-pop,maf-5-all-pops 603 chr1 2489596 2489597 rs17847977 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,IMCJ-GDT, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 604 chr1 2490897 2490898 rs2257763 0 + C C A/C genomic single unknown 0 0 intron,untranslated-3 exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 3209.000000,1799.000000, 0.640775,0.359225, maf-5-some-pop,maf-5-all-pops 604 chr1 2490941 2490942 rs2281852 0 + C C A/C genomic single unknown 0 0 intron,untranslated-3 exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 2994.000000,2014.000000, 0.597843,0.402157, maf-5-some-pop,maf-5-all-pops 604 chr1 2491059 2491060 rs11573979 0 + C C C/T genomic single unknown 0 0 intron,untranslated-3 exact 1 9 1000GENOMES,BUSHMAN,EGP_SNPS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop 604 chr1 2491131 2491132 rs11573980 0 + T T G/T genomic single unknown 0 0 intron,untranslated-3 exact 1 2 1000GENOMES,EGP_SNPS, 2 G,T, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop 604 chr1 2491163 2491164 rs2234160 0 + G G A/G genomic single unknown 0 0 intron,untranslated-3 exact 1 6 1000GENOMES,EGP_SNPS,EVA-GONL,GENAISSANCE,HGSV,ILLUMINA, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 604 chr1 2491204 2491205 rs2234161 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GENAISSANCE,GMI,HGSV,IMCJ-GDT,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1783.000000,3225.000000, 0.356030,0.643970, maf-5-some-pop,maf-5-all-pops 604 chr1 2491305 2491306 rs2234163 0 + G G A/G genomic single unknown 0 0 near-gene-3,ncRNA,missense exact 1 12 1000GENOMES,CLINSEQ_SNP,EGP_SNPS,EVA-GONL,EXOME_CHIP,GENAISSANCE,ILLUMINA,IMCJ-GDT,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, 604 chr1 2492275 2492276 rs2234165 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EGP_SNPS,EVA-GONL,GENAISSANCE,GMI,SSMP, 2 A,G, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop 604 chr1 2492664 2492665 rs11573988 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 4462.000000,546.000000, 0.890974,0.109026, maf-5-some-pop,maf-5-all-pops 604 chr1 2493529 2493530 rs7554260 0 - C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EGP_SNPS,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 604 chr1 2493610 2493611 rs11573991 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EGP_SNPS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 604 chr1 2493891 2493892 rs11573993 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EGP_SNPS,HGSV,ILLUMINA,TISHKOFF, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop 604 chr1 2494815 2494816 rs2234168 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 6 1000GENOMES,BUSHMAN,CGAP-GAI,GENAISSANCE,JMKIDD_LAB,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 604 chr1 2495087 2495088 rs11573996 0 + C C C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 6 1000GENOMES,BUSHMAN,EGP_SNPS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, 604 chr1 2496206 2496207 rs150435051 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 604 chr1 2496648 2496649 rs7544646 0 - C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 604 chr1 2496773 2496774 rs77663589 0 - C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 604 chr1 2496916 2496917 rs11574000 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EGP_SNPS,JMKIDD_LAB, 2 C,T, 4785.000000,223.000000, 0.955471,0.044529, 604 chr1 2498260 2498261 rs140932666 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 604 chr1 2498267 2498268 rs145021926 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 95.000000,4913.000000, 0.018970,0.981030, 604 chr1 2498376 2498377 rs146788683 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 604 chr1 2498861 2498862 rs1555791 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2956.000000,2052.000000, 0.590256,0.409744, 604 chr1 2499182 2499183 rs148018704 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 105.000000,4903.000000, 0.020967,0.979034, 604 chr1 2499242 2499243 rs3118345 0 - C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 3 1000GENOMES,GMI,SC_JCM, 4 A,C,G,T, 1.000000,5007.000000,5007.000000,1.000000, 0.000100,0.499900,0.499900,0.000100, 604 chr1 2499253 2499254 rs2182176 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2861.000000,2147.000000, 0.571286,0.428714, 604 chr1 2499272 2499273 rs576856877 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, 604 chr1 2499273 2499274 rs545968614 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4881.000000,127.000000, 0.974641,0.025359, 604 chr1 2499458 2499459 rs138680782 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 3059.000000,1949.000000, 0.610823,0.389177, 604 chr1 2499779 2499780 rs143280171 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 3280.000000,1728.000000, 0.654952,0.345048, 604 chr1 2499809 2499810 rs150913279 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 2099.000000,2909.000000, 0.419129,0.580871, 604 chr1 2500007 2500008 rs139345775 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 65.000000,4943.000000, 0.012979,0.987021, 604 chr1 2500215 2500216 rs566113216 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 604 chr1 2500398 2500399 rs150047372 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,TISHKOFF, 2 C,T, 107.000000,4901.000000, 0.021366,0.978634, 604 chr1 2500544 2500545 rs148731745 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 72.000000,4936.000000, 0.014377,0.985623, 604 chr1 2500638 2500639 rs2477684 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 604 chr1 2500892 2500893 rs4648647 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 A,G, 2897.000000,2111.000000, 0.578474,0.421526, 604 chr1 2500973 2500974 rs576371981 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 604 chr1 2501063 2501064 rs140287099 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,MPI_MOLGEN,TISHKOFF, 2 A,G, 361.000000,4647.000000, 0.072085,0.927915, 604 chr1 2501221 2501222 rs10797431 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2578.000000,2430.000000, 0.514776,0.485224, maf-5-some-pop,maf-5-all-pops 604 chr1 2501337 2501338 rs10797432 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2101.000000,2907.000000, 0.419529,0.580471, maf-5-some-pop,maf-5-all-pops,microattr-tpa 604 chr1 2501515 2501516 rs10910092 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2099.000000,2909.000000, 0.419129,0.580871, 604 chr1 2501721 2501722 rs72848578 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF, 2 C,T, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 604 chr1 2502009 2502010 rs10797433 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3064.000000,1944.000000, 0.611821,0.388179, maf-5-some-pop,maf-5-all-pops 604 chr1 2502025 2502026 rs59274108 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 604 chr1 2502397 2502398 rs58394094 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 604 chr1 2502606 2502607 rs55744533 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 604 chr1 2502779 2502780 rs6667605 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2053.000000,2955.000000, 0.409944,0.590056, maf-5-some-pop,maf-5-all-pops 604 chr1 2502833 2502834 rs6672381 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2053.000000,2955.000000, 0.409944,0.590056, maf-5-some-pop,maf-5-all-pops 604 chr1 2502919 2502920 rs111857410 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 604 chr1 2503475 2503476 rs142013095 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,MPI_MOLGEN, 2 A,C, 4942.000000,66.000000, 0.986821,0.013179, 604 chr1 2503575 2503575 rs201394395 0 + - - -/TT genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 -,TT, 2163.000000,2845.000000, 0.431909,0.568091, 604 chr1 2504233 2504234 rs6671426 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3242.000000,1766.000000, 0.647364,0.352636, maf-5-some-pop,maf-5-all-pops 604 chr1 2504280 2504281 rs148891190 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, 604 chr1 2504362 2504363 rs28734787 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 517.000000,4491.000000, 0.103235,0.896765, maf-5-some-pop 604 chr1 2505555 2505556 rs58031887 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 604 chr1 2505712 2505713 rs10910093 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4500.000000,508.000000, 0.898562,0.101438, maf-5-some-pop 604 chr1 2506058 2506059 rs80107568 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 604 chr1 2506228 2506229 rs55658746 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1115.000000,3893.000000, 0.222644,0.777356, 604 chr1 2506487 2506488 rs10910094 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1873.000000,3135.000000, 0.374002,0.625998, 604 chr1 2506493 2506494 rs149953264 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 604 chr1 2506539 2506540 rs2257535 0 - T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_JCM, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 604 chr1 2506675 2506676 rs57200053 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 4889.000000,119.000000, 0.976238,0.023762, 604 chr1 2507937 2507938 rs10752745 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 2115.000000,2893.000000, 0.422324,0.577676, maf-5-some-pop,maf-5-all-pops 604 chr1 2508342 2508343 rs200553981 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 1114.000000,3894.000000, 0.222444,0.777556, 604 chr1 2508481 2508482 rs59183280 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, 604 chr1 2509280 2509281 rs191100912 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 76.000000,4932.000000, 0.015176,0.984824, 604 chr1 2510604 2510605 rs75898568 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 604 chr1 2510754 2510755 rs10910095 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 514.000000,4494.000000, 0.102636,0.897364, 604 chr1 2510807 2510808 rs56056337 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 604 chr1 2510912 2510913 rs143126404 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 604 chr1 2510915 2510916 rs111348848 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 119.000000,4889.000000, 0.023762,0.976238, 604 chr1 2511225 2511226 rs111375644 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, 604 chr1 2511279 2511280 rs10797434 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1863.000000,3145.000000, 0.372005,0.627995, maf-5-some-pop,maf-5-all-pops 604 chr1 2511387 2511388 rs12129508 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 632.000000,4376.000000, 0.126198,0.873802, maf-5-some-pop,maf-5-all-pops 604 chr1 2511973 2511973 rs112668594 0 + - - -/AAT genomic insertion unknown 0 0 near-gene-5 between 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,AAT, 2120.000000,2888.000000, 0.423323,0.576677, 604 chr1 2512360 2512361 rs77966379 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,maf-5-all-pops 604 chr1 2512451 2512452 rs4648648 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3274.000000,1734.000000, 0.653754,0.346246, maf-5-some-pop,maf-5-all-pops 604 chr1 2512455 2512456 rs72644674 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, 604 chr1 2512649 2512650 rs4648649 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3228.000000,1780.000000, 0.644569,0.355431, 604 chr1 2512709 2512710 rs10910096 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3228.000000,1780.000000, 0.644569,0.355431, 604 chr1 2512871 2512871 rs538476113 0 + - - -/AAA genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,AAA, 3294.000000,1714.000000, 0.657748,0.342252, 604 chr1 2513013 2513014 rs79146250 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, maf-5-some-pop,maf-5-all-pops 604 chr1 2513054 2513055 rs4486391 0 + A A A/T genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 1734.000000,3274.000000, 0.346246,0.653754, maf-5-some-pop 604 chr1 2513104 2513105 rs735000 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL, 2 C,T, 4475.000000,533.000000, 0.893570,0.106430, maf-5-some-pop 604 chr1 2513160 2513161 rs56975203 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 604 chr1 2513215 2513216 rs734999 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1780.000000,3228.000000, 0.355431,0.644569, maf-5-some-pop,maf-5-all-pops,microattr-tpa 604 chr1 2513631 2513632 rs2016175 0 - C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 604 chr1 2513652 2513656 rs148686434 0 + AAAC AAAC -/AAAC genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,AAAC, 3228.000000,1780.000000, 0.644569,0.355431, 604 chr1 2513677 2513678 rs2016366 0 - A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 604 chr1 2515136 2515137 rs78535951 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,maf-5-all-pops 604 chr1 2515447 2515448 rs148351447 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 604 chr1 2515614 2515615 rs116105186 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 604 chr1 2516780 2516781 rs60733400 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 A,G, 2611.000000,2397.000000, 0.521366,0.478634, maf-5-some-pop,maf-5-all-pops 604 chr1 2516821 2516821 rs554599679 0 + - - -/G/GG genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 3 -,G,GG, 2532.000000,2076.000000,400.000000, 0.505591,0.414537,0.079872, 604 chr1 2517048 2517049 rs72848593 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 604 chr1 2517522 2517523 rs144011571 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 604 chr1 2518048 2518049 rs111285510 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,maf-5-all-pops 604 chr1 2518159 2518160 rs187930969 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, 604 chr1 2518185 2518186 rs10752746 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 604 chr1 2518410 2518411 rs192134357 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 604 chr1 2518853 2518854 rs75483530 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 604 chr1 2519043 2519044 rs150933729 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, 604 chr1 2519598 2519599 rs114054393 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 604 chr1 2519809 2519810 rs78426182 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 7 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 604 chr1 2520301 2520302 rs6667564 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,T, 2808.000000,2200.000000, 0.560703,0.439297, maf-5-some-pop,maf-5-all-pops 604 chr1 2520499 2520500 rs6701238 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF, 2 A,G, 2799.000000,2209.000000, 0.558906,0.441094, maf-5-some-pop,maf-5-all-pops 604 chr1 2520526 2520527 rs6670198 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF, 2 C,T, 2801.000000,2207.000000, 0.559305,0.440695, maf-5-some-pop,maf-5-all-pops 604 chr1 2520742 2520743 rs78851285 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, 604 chr1 2522203 2522204 rs881640 0 + G G G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 11 1000GENOMES,ABI,BL,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TSC-CSHL,YUSUKE, 2 G,T, 4251.000000,757.000000, 0.848842,0.151158, maf-5-some-pop,maf-5-all-pops 604 chr1 2522383 2522384 rs61729818 0 + C C C/T genomic single by-cluster 0.057093 0.159019 ncRNA,untranslated-3 exact 1 2 CORNELL,NHLBI-ESP, 2 C,T, 33.000000,1.000000, 0.970588,0.029412, 604 chr1 2522924 2522925 rs75727593 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop,maf-5-all-pops 604 chr1 2523211 2523212 rs876938 0 - G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 604 chr1 2523660 2523661 rs5772070 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,BL,BUSHMAN,LUNTER,SSMP, 2 -,G, 3582.000000,1426.000000, 0.715256,0.284744, 604 chr1 2523705 2523706 rs867435 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2505.000000,2503.000000, 0.500200,0.499800, maf-5-some-pop,maf-5-all-pops 604 chr1 2523722 2523723 rs867436 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2447.000000,2561.000000, 0.488618,0.511382, maf-5-some-pop,maf-5-all-pops 604 chr1 2523743 2523744 rs112218652 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 C,T, 152.000000,4856.000000, 0.030351,0.969649, 604 chr1 2523769 2523770 rs199913369 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,SSMP,WARNICH_LAB, 2 -,C, 2466.000000,2542.000000, 0.492412,0.507588, 604 chr1 2523806 2523807 rs192349427 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 2500.000000,2508.000000, 0.499201,0.500799, 604 chr1 2523809 2523810 rs182464181 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 2500.000000,2508.000000, 0.499201,0.500799, 604 chr1 2523810 2523811 rs187786174 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 2500.000000,2508.000000, 0.499201,0.500799, 604 chr1 2523968 2523969 rs184574713 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 2565.000000,2443.000000, 0.512181,0.487819, 604 chr1 2523978 2523978 rs374407417 0 + - - -/C genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,WARNICH_LAB, 2 -,C, 2443.000000,2565.000000, 0.487819,0.512181, 604 chr1 2523992 2523993 rs187759598 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 2667.000000,2341.000000, 0.532548,0.467452, 604 chr1 2523998 2523999 rs193231151 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 2666.000000,2342.000000, 0.532348,0.467652, 604 chr1 2524241 2524242 rs113973106 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 604 chr1 2524894 2524895 rs12564460 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1196.000000,3812.000000, 0.238818,0.761182, maf-5-some-pop 604 chr1 2524914 2524915 rs10752747 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP, 2 G,T, 2517.000000,2491.000000, 0.502596,0.497404, maf-5-some-pop,maf-5-all-pops 604 chr1 2525069 2525070 rs145511787 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 604 chr1 2525163 2525164 rs78505356 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 604 chr1 2525207 2525208 rs78027076 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 604 chr1 2526335 2526336 rs114330159 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 604 chr1 2526444 2526445 rs111259181 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 604 chr1 2526570 2526571 rs56305550 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SI_EXO,SSMP, 2 A,G, 387.000000,4621.000000, 0.077276,0.922724, maf-5-some-pop 604 chr1 2527677 2527678 rs2260976 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2493.000000,2515.000000, 0.497804,0.502196, maf-5-some-pop,maf-5-all-pops 604 chr1 2527901 2527902 rs149373691 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP, 2 -,G, 207.000000,4801.000000, 0.041334,0.958666, 604 chr1 2528132 2528133 rs2843401 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2512.000000,2496.000000, 0.501597,0.498403, maf-5-some-pop,maf-5-all-pops 604 chr1 2528681 2528682 rs2843402 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2484.000000,2524.000000, 0.496006,0.503994, maf-5-some-pop,maf-5-all-pops 604 chr1 2528774 2528775 rs72644684 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 338.000000,4670.000000, 0.067492,0.932508, maf-5-some-pop,maf-5-all-pops 604 chr1 2529096 2529097 rs2843403 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2304.000000,2704.000000, 0.460064,0.539936, maf-5-some-pop,maf-5-all-pops 604 chr1 2529551 2529552 rs112057155 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, 604 chr1 2530557 2530558 rs2843404 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2499.000000,2509.000000, 0.499002,0.500998, maf-5-some-pop,maf-5-all-pops 604 chr1 2531466 2531467 rs6689711 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 C,T, 2498.000000,2510.000000, 0.498802,0.501198, maf-5-some-pop,maf-5-all-pops 604 chr1 2531504 2531505 rs6681973 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2697.000000,2311.000000, 0.538538,0.461462, 604 chr1 2531513 2531514 rs6682043 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,C, 2499.000000,2509.000000, 0.499002,0.500998, 604 chr1 2531978 2531979 rs114934862 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,GMI, 2 A,G, 1762.000000,3246.000000, 0.351837,0.648163, 604 chr1 2531979 2531980 rs77157427 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,GMI, 2 A,G, 4079.000000,929.000000, 0.814497,0.185503, 604 chr1 2532045 2532046 rs115525071 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 604 chr1 2532123 2532135 rs141426426 0 + CAAACAAACAAA CAAACAAACAAA -/CAAACAAACAAA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BILGI_BIOE,GMI,LUNTER,SSMP, 2 -,CAAACAAACAAA, 2494.000000,2514.000000, 0.498003,0.501997, 604 chr1 2532159 2532159 rs139552946 0 + - - -/TGT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,LUNTER,WARNICH_LAB, 2 -,TGT, 2514.000000,2494.000000, 0.501997,0.498003, 604 chr1 2532526 2532527 rs78914298 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop,maf-5-all-pops 604 chr1 2532898 2532899 rs6424092 0 + C C A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2530.000000,2478.000000, 0.505192,0.494808, maf-5-some-pop,maf-5-all-pops 604 chr1 2533164 2533165 rs140916321 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 604 chr1 2533249 2533250 rs10910098 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2482.000000,2526.000000, 0.495607,0.504393, maf-5-some-pop,maf-5-all-pops 604 chr1 2533402 2533404 rs113131975 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,AG, 212.000000,4796.000000, 0.042332,0.957668, 604 chr1 2533604 2533605 rs72644697 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 2402.000000,2606.000000, 0.479633,0.520367, 604 chr1 2533705 2533706 rs60520190 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 2484.000000,2524.000000, 0.496006,0.503994, maf-5-some-pop,maf-5-all-pops 604 chr1 2533766 2533767 rs76202520 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 604 chr1 2534086 2534087 rs11585048 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2601.000000,2407.000000, 0.519369,0.480631, maf-5-some-pop,maf-5-all-pops 604 chr1 2534121 2534122 rs114996135 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 604 chr1 2534176 2534177 rs148521286 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 604 chr1 2534196 2534197 rs78792316 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, 604 chr1 2534246 2534247 rs75883940 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,maf-5-all-pops 604 chr1 2534310 2534333 rs541749884 0 + TCCTGCCCCCTTTCTGGCTTTCT TCCTGCCCCCTTTCTGGCTTTCT -/TCCTGCCCCCTTTCTGGCTTTCT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TCCTGCCCCCTTTCTGGCTTTCT, 89.000000,4919.000000, 0.017772,0.982228, 604 chr1 2534374 2534375 rs72644701 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 389.000000,4619.000000, 0.077676,0.922324, maf-5-some-pop,maf-5-all-pops 604 chr1 2534727 2534728 rs12082614 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 604 chr1 2534800 2534801 rs10797435 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2484.000000,2524.000000, 0.496006,0.503994, maf-5-some-pop,maf-5-all-pops 604 chr1 2534977 2534978 rs6664969 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2395.000000,2613.000000, 0.478235,0.521765, maf-5-some-pop,maf-5-all-pops 604 chr1 2535092 2535094 rs35090174 0 + CT CT -/CT genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,CT, 2395.000000,2613.000000, 0.478235,0.521765, 604 chr1 2535274 2535275 rs74047740 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 604 chr1 2535568 2535569 rs111970722 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP, 2 A,C, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 604 chr1 2535612 2535613 rs4648562 0 + C C A/C genomic single unknown 0 0 coding-synon exact 1 18 1000GENOMES,ABI,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2484.000000,2524.000000, 0.496006,0.503994, maf-5-some-pop,maf-5-all-pops 604 chr1 2535757 2535758 rs4648652 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP,WI_SSAHASNP, 2 A,G, 2307.000000,2701.000000, 0.460663,0.539337, maf-5-some-pop,maf-5-all-pops 604 chr1 2535883 2535884 rs74047741 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 604 chr1 2535894 2535895 rs4648653 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 604 chr1 2535920 2535921 rs12080046 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SC_SNP,TISHKOFF, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 604 chr1 2536001 2536002 rs4648563 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2520.000000,2488.000000, 0.503195,0.496805, maf-5-some-pop,maf-5-all-pops 604 chr1 2536812 2536813 rs72646003 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,GMI,SSMP, 2 A,C, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop,maf-5-all-pops 604 chr1 2536844 2536845 rs113840619 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 604 chr1 2537071 2537072 rs4074787 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop 604 chr1 2537094 2537095 rs78506337 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 2546.000000,2462.000000, 0.508387,0.491613, maf-5-some-pop,maf-5-all-pops 604 chr1 2537165 2537166 rs116286701 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4948.000000,60.000000, 0.988019,0.011981, 604 chr1 2537228 2537229 rs115315993 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 604 chr1 2537412 2537413 rs74047742 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 604 chr1 2537800 2537801 rs80219670 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop 604 chr1 2537837 2537838 rs41300092 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BL,BUSHMAN,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP, 2 C,T, 2624.000000,2384.000000, 0.523962,0.476038, maf-5-some-pop,maf-5-all-pops 604 chr1 2538208 2538209 rs10910105 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2382.000000,2626.000000, 0.475639,0.524361, maf-5-some-pop,maf-5-all-pops 604 chr1 2538343 2538344 rs111654423 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop,maf-5-all-pops 604 chr1 2538348 2538349 rs10797436 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 2384.000000,2624.000000, 0.476038,0.523962, maf-5-some-pop,maf-5-all-pops 604 chr1 2538443 2538444 rs111275822 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 604 chr1 2538885 2538886 rs10910106 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 G,T, 2626.000000,2382.000000, 0.524361,0.475639, maf-5-some-pop,maf-5-all-pops 604 chr1 2539005 2539006 rs10797437 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2661.000000,2347.000000, 0.531350,0.468650, maf-5-some-pop,maf-5-all-pops 604 chr1 2539180 2539181 rs10910107 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 2346.000000,2662.000000, 0.468450,0.531550, maf-5-some-pop,maf-5-all-pops 604 chr1 2539399 2539400 rs4445406 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2459.000000,2549.000000, 0.491014,0.508986, maf-5-some-pop,maf-5-all-pops 604 chr1 2539531 2539532 rs10910108 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2343.000000,2665.000000, 0.467851,0.532149, maf-5-some-pop,maf-5-all-pops 604 chr1 2539554 2539555 rs4278312 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2343.000000,2665.000000, 0.467851,0.532149, maf-5-some-pop,maf-5-all-pops 604 chr1 2539589 2539590 rs4422947 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2318.000000,2690.000000, 0.462859,0.537141, maf-5-some-pop,maf-5-all-pops 604 chr1 2539602 2539603 rs60687045 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2401.000000,2607.000000, 0.479433,0.520567, maf-5-some-pop,maf-5-all-pops 604 chr1 2539795 2539796 rs4073285 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2599.000000,2409.000000, 0.518970,0.481030, maf-5-some-pop,maf-5-all-pops 604 chr1 2539900 2539901 rs4073286 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2353.000000,2655.000000, 0.469848,0.530152, maf-5-some-pop,maf-5-all-pops 604 chr1 2539981 2539985 rs145629728 0 + ACAT ACAT -/ACAT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,SSMP, 2 -,ACAT, 2402.000000,2606.000000, 0.479633,0.520367, 604 chr1 2540261 2540262 rs10797438 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2323.000000,2685.000000, 0.463858,0.536142, maf-5-some-pop,maf-5-all-pops 604 chr1 2540342 2540343 rs12046118 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,GMI,SC_SNP,SSMP, 2 A,C, 2310.000000,2698.000000, 0.461262,0.538738, 604 chr1 2540345 2540345 rs111838972 0 + - - -/ACATAT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,BUSHMAN,LUNTER, 2 -,ACATAT, 1523.000000,3485.000000, 0.304113,0.695887, 604 chr1 2540363 2540364 rs10797439 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,G, 2698.000000,2310.000000, 0.538738,0.461262, maf-5-some-pop,maf-5-all-pops 604 chr1 2540593 2540594 rs114808791 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 65.000000,4943.000000, 0.012979,0.987021, 604 chr1 2541268 2541269 rs10797440 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 23 1000GENOMES,ABI,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 2346.000000,2662.000000, 0.468450,0.531550, maf-5-some-pop,maf-5-all-pops 604 chr1 2541726 2541727 rs11589185 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, 604 chr1 2542374 2542375 rs74765696 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 604 chr1 2542652 2542653 rs10910111 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2309.000000,2699.000000, 0.461062,0.538938, maf-5-some-pop,maf-5-all-pops 604 chr1 2544639 2544640 rs10752748 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2371.000000,2637.000000, 0.473442,0.526558, maf-5-some-pop,maf-5-all-pops 604 chr1 2545268 2545269 rs7415281 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF, 2 C,G, 238.000000,4770.000000, 0.047524,0.952476, 604 chr1 2545832 2545833 rs75156903 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop,maf-5-all-pops 604 chr1 2546290 2546291 rs114551988 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 604 chr1 2546477 2546478 rs139714369 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,C, 4945.000000,63.000000, 0.987420,0.012580, 604 chr1 2546592 2546593 rs75596555 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, maf-5-some-pop,maf-5-all-pops 604 chr1 2546807 2546808 rs115594597 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 604 chr1 2547466 2547467 rs76745749 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 604 chr1 2548819 2548820 rs112219735 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 604 chr1 2548851 2548852 rs10752749 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2327.000000,2681.000000, 0.464657,0.535343, 604 chr1 2548899 2548900 rs144217181 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, 604 chr1 2549088 2549089 rs115406155 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 238.000000,4770.000000, 0.047524,0.952476, maf-5-some-pop,maf-5-all-pops 604 chr1 2549148 2549149 rs115506660 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop,maf-5-all-pops 604 chr1 2550964 2550965 rs113162887 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4779.000000,229.000000, 0.954273,0.045727, 604 chr1 2551052 2551053 rs10910112 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2683.000000,2325.000000, 0.535743,0.464257, 604 chr1 2551659 2551660 rs10797441 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2376.000000,2632.000000, 0.474441,0.525559, maf-5-some-pop,maf-5-all-pops 604 chr1 2551784 2551785 rs12117343 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4313.000000,695.000000, 0.861222,0.138778, maf-5-some-pop 604 chr1 2552070 2552071 rs6673993 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2683.000000,2325.000000, 0.535743,0.464257, maf-5-some-pop,maf-5-all-pops 604 chr1 2553011 2553011 rs575166129 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 2779.000000,2229.000000, 0.554912,0.445088, 604 chr1 2553082 2553083 rs4648654 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2682.000000,2326.000000, 0.535543,0.464457, 604 chr1 2553381 2553382 rs79819878 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 604 chr1 2553493 2553494 rs112078941 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 604 chr1 2553542 2553545 rs74731535 0 + AGG AGG -/AGG genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AGG, 2615.000000,2393.000000, 0.522165,0.477835, 604 chr1 2553656 2553657 rs74466775 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, 604 chr1 2554119 2554120 rs61765771 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 228.000000,4780.000000, 0.045527,0.954473, 604 chr1 2554562 2554563 rs12146058 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 2588.000000,2420.000000, 0.516773,0.483227, 604 chr1 2555128 2555129 rs72646016 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop,maf-5-all-pops 604 chr1 2555639 2555640 rs28568531 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2510.000000,2498.000000, 0.501198,0.498802, maf-5-some-pop,maf-5-all-pops 604 chr1 2556124 2556125 rs7368072 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2622.000000,2386.000000, 0.523562,0.476438, maf-5-some-pop,maf-5-all-pops 604 chr1 2556285 2556286 rs141334865 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 604 chr1 2556345 2556346 rs115442117 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop,maf-5-all-pops 604 chr1 2556547 2556548 rs7368105 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2579.000000,2429.000000, 0.514976,0.485024, maf-5-some-pop,maf-5-all-pops 604 chr1 2556708 2556709 rs7364820 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2429.000000,2579.000000, 0.485024,0.514976, maf-5-some-pop,maf-5-all-pops 604 chr1 2557190 2557191 rs7523364 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2429.000000,2579.000000, 0.485024,0.514976, 604 chr1 2557376 2557376 rs112944993 0 + - - -/GAA genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER, 2 -,GAA, 2702.000000,2306.000000, 0.539537,0.460463, 604 chr1 2557530 2557531 rs6422657 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2429.000000,2579.000000, 0.485024,0.514976, maf-5-some-pop,maf-5-all-pops 604 chr1 2558307 2558308 rs6668149 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2430.000000,2578.000000, 0.485224,0.514776, maf-5-some-pop,maf-5-all-pops 604 chr1 2558616 2558617 rs56224921 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 604 chr1 2558739 2558740 rs12748729 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2414.000000,2594.000000, 0.482029,0.517971, maf-5-some-pop,maf-5-all-pops 604 chr1 2559588 2559589 rs12730932 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 G,T, 2606.000000,2402.000000, 0.520367,0.479633, maf-5-some-pop,maf-5-all-pops 604 chr1 2559733 2559734 rs79793581 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,EVA-GONL, 2 G,T, 4945.000000,63.000000, 0.987420,0.012580, 604 chr1 2559986 2559987 rs116257185 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 118.000000,4890.000000, 0.023562,0.976438, 604 chr1 2560353 2560354 rs141120871 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 122.000000,4886.000000, 0.024361,0.975639, 604 chr1 2560467 2560479 rs540228927 0 + GGCGGAGGCGGA GGCGGAGGCGGA -/GGCGGAGGCGGA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GGCGGAGGCGGA, 58.000000,4950.000000, 0.011582,0.988419, 604 chr1 2560734 2560735 rs4648657 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 2415.000000,2593.000000, 0.482228,0.517772, maf-5-some-pop,maf-5-all-pops 604 chr1 2560881 2560882 rs4648658 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SEATTLESEQ,SSMP,WI_SSAHASNP, 2 A,G, 2311.000000,2697.000000, 0.461462,0.538538, maf-5-some-pop,maf-5-all-pops 604 chr1 2560902 2560903 rs4648659 0 + T T G/T genomic single unknown 0 0 coding-synon exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,NHLBI-ESP,PJP,SSMP,WI_SSAHASNP, 2 G,T, 2583.000000,2425.000000, 0.515775,0.484225, maf-5-some-pop,maf-5-all-pops 604 chr1 2561259 2561262 rs70956313 0 + CCC CCC -/CCC genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,CCC, 2592.000000,2416.000000, 0.517572,0.482428, 604 chr1 2561285 2561286 rs28532547 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2583.000000,2425.000000, 0.515775,0.484225, maf-5-some-pop,maf-5-all-pops 604 chr1 2561752 2561754 rs201582485 0 + GA GA -/GA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GA, 54.000000,4954.000000, 0.010783,0.989217, 604 chr1 2561846 2561847 rs191484318 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4897.000000,111.000000, 0.977835,0.022164, 604 chr1 2561980 2561982 rs200835602 0 + TC TC -/TC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TC, 123.000000,4885.000000, 0.024561,0.975439, 604 chr1 2562009 2562013 rs199970963 0 + GTGA GTGA -/GTGA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GTGA, 94.000000,4914.000000, 0.018770,0.981230, 604 chr1 2562168 2562169 rs4648564 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2641.000000,2367.000000, 0.527356,0.472644, 604 chr1 2562185 2562187 rs200829075 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,AT, 51.000000,4957.000000, 0.010184,0.989816, 604 chr1 2562458 2562459 rs563284678 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 118.000000,4890.000000, 0.023562,0.976438, 604 chr1 2562995 2562996 rs79912256 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 604 chr1 2563249 2563250 rs12749591 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2701.000000,2307.000000, 0.539337,0.460663, maf-5-some-pop,maf-5-all-pops 604 chr1 2564011 2564012 rs11486042 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2242.000000,2766.000000, 0.447684,0.552316, maf-5-some-pop,maf-5-all-pops 604 chr1 2564182 2564183 rs6698817 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2591.000000,2417.000000, 0.517372,0.482628, maf-5-some-pop,maf-5-all-pops 604 chr1 2564464 2564465 rs12752515 0 + T T C/T genomic single unknown 0 0 missense,untranslated-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2592.000000,2416.000000, 0.517572,0.482428, maf-5-some-pop,maf-5-all-pops 604 chr1 2564486 2564487 rs75325639 0 + C C A/C genomic single unknown 0 0 near-gene-5,missense exact 1 1 1000GENOMES, 2 A,C, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 604 chr1 2564804 2564805 rs12723864 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3545.000000,1463.000000, 0.707867,0.292133, maf-5-some-pop,maf-5-all-pops 604 chr1 2565229 2565230 rs12741533 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP,TISHKOFF, 2 C,G, 151.000000,4857.000000, 0.030152,0.969848, 604 chr1 2566024 2566025 rs66705332 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3552.000000,1456.000000, 0.709265,0.290735, maf-5-some-pop,maf-5-all-pops 604 chr1 2566466 2566470 rs113402723 0 + CACC CACC -/CACC genomic deletion unknown 0 0 near-gene-5 range 1 2 1000GENOMES,BUSHMAN, 2 -,CACC, 318.000000,4690.000000, 0.063498,0.936502, 604 chr1 2566496 2566497 rs6671625 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,G, 1716.000000,3292.000000, 0.342652,0.657348, 604 chr1 2566581 2566582 rs539937061 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 210.000000,4798.000000, 0.041933,0.958067, 604 chr1 2566582 2566583 rs556728314 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 210.000000,4798.000000, 0.041933,0.958067, 604 chr1 2566936 2566937 rs61765774 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 906.000000,4102.000000, 0.180911,0.819089, maf-5-some-pop,maf-5-all-pops 604 chr1 2567420 2567421 rs12756665 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3349.000000,1659.000000, 0.668730,0.331270, maf-5-some-pop,maf-5-all-pops 604 chr1 2567490 2567491 rs12739597 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3553.000000,1455.000000, 0.709465,0.290535, maf-5-some-pop,maf-5-all-pops 604 chr1 2567499 2567500 rs6666788 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2527.000000,2481.000000, 0.504593,0.495407, maf-5-some-pop,maf-5-all-pops 604 chr1 2567561 2567562 rs28629470 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 4810.000000,198.000000, 0.960463,0.039537, maf-5-some-pop,maf-5-all-pops 604 chr1 2567866 2567867 rs192450708 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 604 chr1 2568424 2568425 rs4648661 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1463.000000,3545.000000, 0.292133,0.707867, maf-5-some-pop,maf-5-all-pops 604 chr1 2568901 2568902 rs116340615 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 604 chr1 2568923 2568924 rs531369017 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSIP, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 604 chr1 2569169 2569170 rs28696944 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,ENSEMBL,EVA-GONL,SSAHASNP, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, 604 chr1 2569172 2569174 rs57154273 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BUSHMAN,HGSV,LUNTER,TISHKOFF, 2 -,CA, 147.000000,4861.000000, 0.029353,0.970647, 604 chr1 2569879 2569880 rs114415399 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 604 chr1 2569926 2569927 rs58934544 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, 604 chr1 2570011 2570012 rs72849541 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 604 chr1 2570022 2570023 rs4648565 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2368.000000,2640.000000, 0.472843,0.527157, maf-5-some-pop,maf-5-all-pops 604 chr1 2570070 2570071 rs77891804 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 604 chr1 2570125 2570126 rs4076498 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,JMKIDD_LAB,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop,maf-5-all-pops 604 chr1 2570184 2570185 rs4076496 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,SC_JCM,TSC-CSHL, 2 A,G, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop,maf-5-all-pops 604 chr1 2570896 2570897 rs78510883 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 604 chr1 2571201 2571202 rs57402098 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop,maf-5-all-pops 604 chr1 2571674 2571675 rs115493280 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop,maf-5-all-pops 604 chr1 2571822 2571823 rs28690427 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2390.000000,2618.000000, 0.477236,0.522764, maf-5-some-pop,maf-5-all-pops 604 chr1 2572511 2572512 rs548579352 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 604 chr1 2572560 2572561 rs568745789 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 604 chr1 2572642 2572643 rs184047963 0 + G G G/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 G,T, 4887.000000,121.000000, 0.975839,0.024161, 604 chr1 2573198 2573199 rs4648662 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop 604 chr1 2573726 2573727 rs4648663 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 320.000000,4688.000000, 0.063898,0.936102, maf-5-some-pop 604 chr1 2573902 2573903 rs12726651 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops 604 chr1 2574077 2574078 rs9970196 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WUGSC_SSAHASNP, 2 C,T, 2583.000000,2425.000000, 0.515775,0.484225, maf-5-some-pop,maf-5-all-pops 604 chr1 2574313 2574314 rs115452290 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 604 chr1 2574462 2574463 rs59167090 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 604 chr1 2574573 2574574 rs76895842 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 604 chr1 2574586 2574587 rs146547786 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 604 chr1 2575091 2575091 rs200640386 0 + - - -/G genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,G, 4894.000000,114.000000, 0.977236,0.022764, 604 chr1 2575095 2575096 rs4075560 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop,maf-5-all-pops 604 chr1 2575166 2575167 rs540102703 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSIP, 2 G,T, 60.000000,4948.000000, 0.011981,0.988019, 604 chr1 2575568 2575569 rs140855582 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 604 chr1 2575732 2575733 rs72849544 0 + C C C/G genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF, 2 C,G, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 604 chr1 2575810 2575811 rs114117211 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 604 chr1 2576958 2576959 rs28547181 0 + C C C/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, 604 chr1 2577279 2577280 rs79272086 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 604 chr1 2577435 2577436 rs78478400 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 604 chr1 2577612 2577613 rs58546948 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop,maf-5-all-pops 604 chr1 2578219 2578220 rs12744876 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3583.000000,1425.000000, 0.715455,0.284545, maf-5-some-pop,maf-5-all-pops 604 chr1 2578728 2578729 rs78791115 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop,maf-5-all-pops 604 chr1 2578800 2578801 rs28896210 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSAHASNP, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 604 chr1 2578802 2578803 rs59992847 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 604 chr1 2578899 2578900 rs149956726 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 604 chr1 2579066 2579067 rs115447010 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 604 chr1 2579419 2579420 rs144187479 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 54.000000,4954.000000, 0.010783,0.989217, 604 chr1 2579444 2579445 rs57209476 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 7 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,HGSV,PJP,SSMP, 2 -,T, 1136.000000,3872.000000, 0.226837,0.773163, 604 chr1 2579598 2579601 rs139505964 0 + CTT CTT -/CTT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CTT, 141.000000,4867.000000, 0.028155,0.971845, 604 chr1 2580545 2580546 rs34897702 0 - C C A/G genomic single unknown 0 0 intron exact 1 3 ABI,ILLUMINA,KRIBB_YJKIM, 2 A,G, 63.000000,221.000000, 0.221831,0.778169, maf-5-some-pop,maf-5-all-pops 604 chr1 2581213 2581214 rs150268071 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 604 chr1 2581541 2581542 rs28611770 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2319.000000,2689.000000, 0.463059,0.536941, 604 chr1 2581543 2581544 rs149007480 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4873.000000,135.000000, 0.973043,0.026957, 604 chr1 2581612 2581613 rs563448509 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 604 chr1 2581644 2581645 rs529068471 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 604 chr1 2581666 2581667 rs55720755 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,HGSV, 2 A,T, 4943.000000,65.000000, 0.987021,0.012979, 604 chr1 2581687 2581688 rs28452867 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,SSAHASNP, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 604 chr1 2582339 2582340 rs12732266 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3575.000000,1433.000000, 0.713858,0.286142, 604 chr1 2582547 2582548 rs78040270 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,maf-5-all-pops 604 chr1 2582994 2582995 rs116047675 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 604 chr1 2583236 2583237 rs200467529 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 604 chr1 2583271 2583272 rs115187098 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 604 chr1 2583321 2583322 rs28433758 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop,maf-5-all-pops 604 chr1 2583454 2583455 rs12738064 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,BL,GMI,HGSV,SSAHASNP,SSMP, 2 C,T, 0.000000,5008.000000, 0.000000,1.000000, 604 chr1 2583463 2583464 rs137966872 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BL, 2 C,G, 5008.000000,0.000000, 1.000000,0.000000, 604 chr1 2583558 2583559 rs113219361 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,BILGI_BIOE,BUSHMAN,SSMP, 2 -,T, 4674.000000,334.000000, 0.933307,0.066693, 604 chr1 2583559 2583560 rs56396162 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 4674.000000,334.000000, 0.933307,0.066693, 604 chr1 2584009 2584010 rs576798858 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4851.000000,157.000000, 0.968650,0.031350, 604 chr1 2584094 2584095 rs4648664 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,WI_SSAHASNP, 2 A,C, 3223.000000,1785.000000, 0.643570,0.356430, 604 chr1 2584251 2584252 rs4648665 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,WI_SSAHASNP, 2 A,G, 2334.000000,2674.000000, 0.466054,0.533946, 604 chr1 2584509 2584510 rs56005609 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 604 chr1 2584608 2584609 rs527911468 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 3649.000000,1359.000000, 0.728634,0.271366, 604 chr1 2584686 2584687 rs564380953 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4901.000000,107.000000, 0.978634,0.021366, 604 chr1 2584786 2584787 rs56375117 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 462.000000,4546.000000, 0.092252,0.907748, 604 chr1 2584990 2584991 rs6691639 0 + A A A/T genomic single by-cluster,by-frequency 0.244898 0.249948 intron exact 1 11 BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP, 2 A,T, 2.000000,12.000000, 0.142857,0.857143, 604 chr1 2585043 2585044 rs6604990 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,ENSEMBL,GMI,HGSV,PJP,SC_JCM, 2 C,T, 3123.000000,1885.000000, 0.623602,0.376398, 604 chr1 2585208 2585209 rs11510858 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,HGSV,PJP,SC_SNP, 2 A,C, 2320.000000,2688.000000, 0.463259,0.536741, 604 chr1 2585587 2585588 rs527591350 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4803.000000,205.000000, 0.959065,0.040934, 604 chr1 2585689 2585690 rs61765823 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI, 2 A,C, 4652.000000,356.000000, 0.928914,0.071086, 604 chr1 2585771 2585772 rs6686754 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,GMI,HGSV,PJP, 2 C,T, 2391.000000,2617.000000, 0.477436,0.522564, 604 chr1 2585800 2585801 rs28498367 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,GMI,HGSV,SSAHASNP, 2 C,G, 650.000000,4358.000000, 0.129792,0.870208, 604 chr1 2585905 2585906 rs6694964 0 + A A A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP, 2 A,T, 2169.000000,2839.000000, 0.433107,0.566893, 604 chr1 2585964 2585965 rs6689281 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,PJP, 2 C,T, 3257.000000,1751.000000, 0.650359,0.349641, 604 chr1 2586276 2586277 rs533124592 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, 604 chr1 2586302 2586303 rs28688388 0 + G G A/G genomic single by-cluster,by-frequency,by-hapmap 0.181307 0.240377 intron exact 1 3 ILLUMINA,KRIBB_YJKIM,SSAHASNP, 2 A,G, 74.000000,660.000000, 0.100817,0.899183, maf-5-some-pop 604 chr1 2587201 2587202 rs28507281 0 + C C C/T genomic single by-frequency 0.32 0.24 intron exact 1 6 BCMHGSC_JDW,BL,ENSEMBL,GMI,HGSV,SSAHASNP, 2 C,T, 8.000000,2.000000, 0.800000,0.200000, 604 chr1 2588614 2588624 rs148693721 0 + CACACCCCCA CACACCCCCA -/CACACCCCCA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,GMI, 2 -,CACACCCCCA, 3489.000000,1519.000000, 0.696685,0.303315, 604 chr1 2588801 2588802 rs4648690 0 - T T A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 4 1000GENOMES,BCMHGSC_JDW,PJP,WI_SSAHASNP, 4 A,C,G,T, 5006.000000,2.000000,2.000000,5006.000000, 0.499800,0.000200,0.000200,0.499800, 604 chr1 2588946 2588947 rs147451570 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,SSMP, 2 A,C, 279.000000,4729.000000, 0.055711,0.944289, 604 chr1 2589220 2589221 rs569398595 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4942.000000,66.000000, 0.986821,0.013179, 604 chr1 2589821 2589822 rs372122468 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 3787.000000,1221.000000, 0.756190,0.243810, 604 chr1 2590758 2590759 rs554675653 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 1595.000000,3413.000000, 0.318490,0.681510, 604 chr1 2593784 2593785 rs536199031 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 604 chr1 2593788 2593789 rs553110423 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 54.000000,4954.000000, 0.010783,0.989217, 604 chr1 2603024 2603034 rs561622533 0 + CACACCCCCA CACACCCCCA -/CACACCCCCA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CACACCCCCA, 3381.000000,1627.000000, 0.675120,0.324880, 604 chr1 2603214 2603215 rs145564931 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,GMI,PJP, 2 A,G, 591.000000,4417.000000, 0.118011,0.881989, 604 chr1 2605602 2605603 rs552807612 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 604 chr1 2606552 2606553 rs560723276 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 604 chr1 2613076 2613077 rs138553018 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 604 chr1 2613464 2613465 rs548377365 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, 604 chr1 2614812 2614813 rs7415296 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,GMI,HGSV,SC_JCM,SSMP, 2 C,T, 4782.000000,226.000000, 0.954872,0.045128, 604 chr1 2614952 2614953 rs6687492 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,GMI, 2 A,C, 1642.000000,3366.000000, 0.327875,0.672125, 604 chr1 2614987 2614988 rs201997446 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4052.000000,956.000000, 0.809105,0.190895, 604 chr1 2615056 2615057 rs6604994 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,GMI,PJP,SC_JCM,SSMP, 2 C,G, 1833.000000,3175.000000, 0.366014,0.633986, 604 chr1 2615133 2615134 rs78125432 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,PJP,SSMP, 2 C,G, 3952.000000,1056.000000, 0.789137,0.210863, 604 chr1 2615318 2615319 rs7415101 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,HGSV,PJP,SC_JCM,SSMP, 2 A,G, 1194.000000,3814.000000, 0.238419,0.761581, 604 chr1 2615403 2615404 rs4648676 0 + C C C/T genomic single by-cluster,by-frequency 0.42 0.183303 intron exact 1 4 ENSEMBL,HGSV,HUMANGENOME_JCVI,WI_SSAHASNP, 2 C,T, 7.000000,3.000000, 0.700000,0.300000, 604 chr1 2615406 2615407 rs563357646 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 604 chr1 2615493 2615494 rs4648678 0 + A A A/T genomic single by-cluster,by-frequency 0.42 0.183303 intron exact 1 5 ENSEMBL,HGSV,HUMANGENOME_JCVI,PJP,WI_SSAHASNP, 2 A,T, 7.000000,3.000000, 0.700000,0.300000, 604 chr1 2615634 2615635 rs56293461 0 + C C A/C genomic single by-cluster,by-frequency 0.48 0.09798 intron exact 1 5 ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP, 2 A,C, 4.000000,6.000000, 0.400000,0.600000, 604 chr1 2616115 2616116 rs6683769 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,GMI,HGSV,PJP, 2 C,G, 4702.000000,306.000000, 0.938898,0.061102, 604 chr1 2616130 2616131 rs538996413 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 597.000000,4411.000000, 0.119209,0.880791, 604 chr1 2616131 2616132 rs559036277 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 597.000000,4411.000000, 0.119209,0.880791, 604 chr1 2616386 2616387 rs6662065 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP, 2 C,T, 3519.000000,1489.000000, 0.702676,0.297324, 604 chr1 2616439 2616440 rs6662172 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,ENSEMBL,GMI,HGSV,PJP, 2 A,C, 1393.000000,3615.000000, 0.278155,0.721845, 604 chr1 2616518 2616519 rs28410393 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 C,G, 4375.000000,633.000000, 0.873602,0.126398, 604 chr1 2616519 2616520 rs28520729 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSAHASNP,SSMP, 2 C,G, 4375.000000,633.000000, 0.873602,0.126398, 604 chr1 2616604 2616605 rs28436923 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,GMI,HGSV,SSAHASNP,SSMP, 2 A,T, 1454.000000,3554.000000, 0.290335,0.709665, 604 chr1 2616670 2616670 rs569570225 0 + - - -/C genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,C, 4493.000000,515.000000, 0.897165,0.102835, 604 chr1 2616782 2616783 rs111948628 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,GMI,MPI_MOLGEN,SSMP, 2 G,T, 3615.000000,1393.000000, 0.721845,0.278155, 604 chr1 2616987 2616988 rs200882859 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 1398.000000,3610.000000, 0.279153,0.720847, 604 chr1 2617266 2617267 rs28555663 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,ENSEMBL,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 G,T, 3520.000000,1488.000000, 0.702875,0.297125, 604 chr1 2617523 2617524 rs376294707 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 -,A, 691.000000,4317.000000, 0.137979,0.862021, 604 chr1 2617561 2617562 rs56133135 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,HGSV,PJP,SSMP, 2 C,G, 1376.000000,3632.000000, 0.274760,0.725240, 604 chr1 2617604 2617605 rs61763547 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,BL,SSMP, 2 G,T, 4295.000000,713.000000, 0.857628,0.142372, 604 chr1 2617653 2617654 rs555651041 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4931.000000,77.000000, 0.984625,0.015375, 604 chr1 2617701 2617702 rs139569969 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,MPI_MOLGEN,SSMP, 2 A,G, 775.000000,4233.000000, 0.154752,0.845248, 604 chr1 2618030 2618031 rs7416366 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,HGSV,PJP,SC_JCM,SSMP, 2 G,T, 3553.000000,1455.000000, 0.709465,0.290535, 604 chr1 2618174 2618175 rs149212243 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,SSMP, 2 C,T, 797.000000,4211.000000, 0.159145,0.840855, 604 chr1 2618180 2618181 rs565396242 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 3905.000000,1103.000000, 0.779752,0.220248, 604 chr1 2618217 2618217 rs201540371 0 + - - -/GAC genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,GAC, 4336.000000,672.000000, 0.865815,0.134185, 604 chr1 2618347 2618348 rs547081012 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, 604 chr1 2618353 2618354 rs560571787 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 126.000000,4882.000000, 0.025160,0.974840, 604 chr1 2618521 2618522 rs4648679 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,WI_SSAHASNP, 2 C,G, 3617.000000,1391.000000, 0.722244,0.277756, 604 chr1 2618556 2618557 rs199938865 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4698.000000,310.000000, 0.938099,0.061901, 604 chr1 2618623 2618624 rs28436796 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,ENSEMBL,GMI,PJP,SSAHASNP, 2 C,G, 4313.000000,695.000000, 0.861222,0.138778, 604 chr1 2618918 2618919 rs568028875 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 604 chr1 2619006 2619007 rs28636965 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ENSEMBL,GMI,PJP,SSAHASNP,SSMP, 2 C,G, 1095.000000,3913.000000, 0.218650,0.781350, 604 chr1 2619051 2619052 rs61765682 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 A,G, 235.000000,4773.000000, 0.046925,0.953075, 604 chr1 2619227 2619228 rs6604995 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SC_JCM,SSMP, 2 C,T, 3700.000000,1308.000000, 0.738818,0.261182, 604 chr1 2619412 2619413 rs4648680 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,GMI,HGSV,PJP,SSMP,WI_SSAHASNP, 2 A,T, 224.000000,4784.000000, 0.044728,0.955272, 604 chr1 2619730 2619731 rs80117635 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,PJP, 2 C,G, 3816.000000,1192.000000, 0.761981,0.238019, 604 chr1 2620018 2620019 rs60995822 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,HGSV,PJP, 2 A,C, 2120.000000,2888.000000, 0.423323,0.576677, 604 chr1 2620151 2620152 rs567002214 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, 604 chr1 2620370 2620371 rs79767008 0 + T T C/T genomic single by-frequency 0.48 0.09798 intron exact 1 2 ENSEMBL,GMI, 2 C,T, 6.000000,4.000000, 0.600000,0.400000, 604 chr1 2620371 2620372 rs78635824 0 + C C A/C genomic single by-frequency 0.48 0.09798 intron exact 1 1 ENSEMBL, 2 A,C, 6.000000,4.000000, 0.600000,0.400000, 604 chr1 2620481 2620482 rs58318302 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,ENSEMBL,GMI,HGSV,SSMP, 2 A,T, 2233.000000,2775.000000, 0.445887,0.554113, 604 chr1 2620612 2620613 rs78622275 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ENSEMBL,GMI,MPI_MOLGEN,SSMP, 2 A,C, 2035.000000,2973.000000, 0.406350,0.593650, 604 chr1 2620638 2620639 rs55815307 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 604 chr1 2620733 2620734 rs76034555 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ENSEMBL,GMI, 2 C,G, 159.000000,4849.000000, 0.031749,0.968251, 604 chr1 2620834 2620835 rs368868269 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 150.000000,4858.000000, 0.029952,0.970048, 604 chr1 2620836 2620837 rs61765695 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,SSMP, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, 604 chr1 2620853 2620854 rs376008341 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 1000.000000,4008.000000, 0.199681,0.800319, 604 chr1 2620913 2620914 rs570821725 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4857.000000,151.000000, 0.969848,0.030152, 604 chr1 2621077 2621078 rs79738433 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,ENSEMBL,GMI,MPI_MOLGEN, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 604 chr1 2621121 2621122 rs28661944 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,HGSV,PJP,SSAHASNP, 2 A,G, 827.000000,4181.000000, 0.165136,0.834864, 604 chr1 2621144 2621145 rs28657620 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 G,T, 4897.000000,111.000000, 0.977835,0.022164, 604 chr1 2621351 2621352 rs28774982 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 C,G, 2424.000000,2584.000000, 0.484026,0.515974, 604 chr1 2621357 2621358 rs28581654 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,GMI,SSAHASNP, 2 C,T, 253.000000,4755.000000, 0.050519,0.949481, 605 chr1 2621513 2621514 rs565845327 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 605 chr1 2621542 2621543 rs535877926 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 605 chr1 2621556 2621557 rs138894214 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,GMI, 2 G,T, 53.000000,4955.000000, 0.010583,0.989417, 605 chr1 2621621 2621622 rs28657015 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 C,T, 3592.000000,1416.000000, 0.717252,0.282748, 605 chr1 2621657 2621658 rs559199546 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4863.000000,145.000000, 0.971046,0.028954, 605 chr1 2621762 2621763 rs76337087 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,BL,GMI, 2 A,G, 4930.000000,78.000000, 0.984425,0.015575, 605 chr1 2621836 2621837 rs28420770 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,HGSV,PJP,SSAHASNP, 2 A,C, 1424.000000,3584.000000, 0.284345,0.715655, 605 chr1 2621865 2621866 rs566450538 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 605 chr1 2621916 2621917 rs111906946 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,BL, 2 A,C, 4930.000000,78.000000, 0.984425,0.015575, 605 chr1 2621977 2621978 rs560886937 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 605 chr1 2622153 2622154 rs28499205 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 C,G, 2633.000000,2375.000000, 0.525759,0.474241, 605 chr1 2622253 2622254 rs554044623 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 605 chr1 2622258 2622259 rs150501711 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 -,C, 1368.000000,3640.000000, 0.273163,0.726837, 605 chr1 2622367 2622368 rs549386793 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, 605 chr1 2622401 2622402 rs539684876 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 59.000000,4949.000000, 0.011781,0.988219, 605 chr1 2622440 2622441 rs571733146 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 605 chr1 2622460 2622461 rs58055515 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP, 2 A,C, 2500.000000,2508.000000, 0.499201,0.500799, 605 chr1 2622488 2622489 rs56814247 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,HGSV,PJP,SSMP, 2 A,G, 2516.000000,2492.000000, 0.502396,0.497604, 605 chr1 2622534 2622535 rs576171314 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, 605 chr1 2622685 2622686 rs56822453 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 C,G, 2490.000000,2518.000000, 0.497204,0.502796, 605 chr1 2622876 2622877 rs61765713 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,BL,GMI, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 605 chr1 2622983 2622984 rs55724072 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 A,C, 1433.000000,3575.000000, 0.286142,0.713858, 605 chr1 2623097 2623098 rs544581083 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 112.000000,4896.000000, 0.022364,0.977636, 605 chr1 2623117 2623118 rs551314626 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 605 chr1 2623121 2623122 rs530486210 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 605 chr1 2623122 2623123 rs550670380 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 605 chr1 2623127 2623128 rs28729890 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,G, 2430.000000,2578.000000, 0.485224,0.514776, 605 chr1 2623179 2623180 rs55713073 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 C,G, 3560.000000,1448.000000, 0.710863,0.289137, 605 chr1 2623221 2623222 rs552859393 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 146.000000,4862.000000, 0.029153,0.970847, 605 chr1 2623223 2623224 rs569308093 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4862.000000,146.000000, 0.970847,0.029153, 605 chr1 2623224 2623225 rs538443971 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 122.000000,4886.000000, 0.024361,0.975639, 605 chr1 2623325 2623326 rs28398452 0 + A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,T, 873.000000,4135.000000, 0.174321,0.825679, 605 chr1 2623373 2623374 rs56294415 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 C,G, 3350.000000,1658.000000, 0.668930,0.331070, 605 chr1 2623443 2623444 rs28704604 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,GMI,SSAHASNP,SSMP, 2 G,T, 3600.000000,1408.000000, 0.718850,0.281150, 605 chr1 2623577 2623578 rs575947571 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, 605 chr1 2623946 2623947 rs529304347 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, 605 chr1 2623977 2623978 rs547375894 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, 605 chr1 2624008 2624009 rs28391329 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,GMI,SSAHASNP,SSMP, 2 C,G, 1369.000000,3639.000000, 0.273363,0.726637, 605 chr1 2624024 2624025 rs541664353 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, 605 chr1 2624116 2624117 rs4648681 0 + T T A/T genomic single by-cluster,by-frequency 0.48 0.09798 intron exact 1 6 BCMHGSC_JDW,ENSEMBL,GMI,PJP,SSMP,WI_SSAHASNP, 2 A,T, 6.000000,4.000000, 0.600000,0.400000, 605 chr1 2624135 2624136 rs61765743 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCMHGSC_JDW,ENSEMBL, 2 C,T, 4329.000000,679.000000, 0.864417,0.135583, 605 chr1 2624335 2624336 rs367868949 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 605 chr1 2624503 2624504 rs28730517 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,SSAHASNP,SSMP, 2 A,C, 2355.000000,2653.000000, 0.470248,0.529752, 605 chr1 2624577 2624578 rs111838542 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,SSMP, 2 A,C, 58.000000,4950.000000, 0.011582,0.988419, 605 chr1 2624733 2624734 rs373675619 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, 605 chr1 2624921 2624922 rs545213678 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 605 chr1 2625144 2625145 rs538571087 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 605 chr1 2625153 2625154 rs11486069 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,PJP,SC_SNP,SSMP, 2 A,G, 2479.000000,2529.000000, 0.495008,0.504992, 605 chr1 2625239 2625240 rs372632288 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 61.000000,4947.000000, 0.012180,0.987819, 605 chr1 2625286 2625287 rs533922921 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4855.000000,153.000000, 0.969449,0.030551, 605 chr1 2625298 2625299 rs28561390 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,PJP,SSAHASNP,SSMP, 2 A,C, 978.000000,4030.000000, 0.195288,0.804712, 605 chr1 2625450 2625451 rs61765753 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,BL,GMI,SSMP, 2 C,G, 864.000000,4144.000000, 0.172524,0.827476, 605 chr1 2625511 2625512 rs4648682 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,WI_SSAHASNP, 2 A,G, 1434.000000,3574.000000, 0.286342,0.713658, 605 chr1 2625550 2625551 rs61765754 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCMHGSC_JDW,SSMP, 2 A,C, 866.000000,4142.000000, 0.172923,0.827077, 605 chr1 2625626 2625627 rs201528083 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,C, 111.000000,4897.000000, 0.022164,0.977835, 605 chr1 2625702 2625703 rs139907478 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,PJP,SSMP, 2 C,T, 3602.000000,1406.000000, 0.719249,0.280751, 605 chr1 2625779 2625780 rs547444543 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 154.000000,4854.000000, 0.030751,0.969249, 605 chr1 2625943 2625944 rs578009830 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4856.000000,152.000000, 0.969649,0.030351, 605 chr1 2626048 2626049 rs569299596 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4945.000000,63.000000, 0.987420,0.012580, 605 chr1 2626084 2626085 rs28619423 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,SSAHASNP,SSMP, 2 C,T, 1966.000000,3042.000000, 0.392572,0.607428, 605 chr1 2626088 2626089 rs28373809 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,HGSV,SSAHASNP, 2 A,G, 1941.000000,3067.000000, 0.387580,0.612420, 605 chr1 2626096 2626097 rs28648843 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,HGSV,SSAHASNP, 2 A,G, 3103.000000,1905.000000, 0.619609,0.380391, 605 chr1 2626119 2626120 rs58049217 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,GMI,HGSV,SSMP, 2 C,G, 226.000000,4782.000000, 0.045128,0.954872, 605 chr1 2626123 2626124 rs543076200 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 163.000000,4845.000000, 0.032548,0.967452, 605 chr1 2626124 2626125 rs559710370 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4845.000000,163.000000, 0.967452,0.032548, 605 chr1 2626127 2626128 rs527561399 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, 605 chr1 2626128 2626129 rs547671677 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4845.000000,163.000000, 0.967452,0.032548, 605 chr1 2626129 2626130 rs564084991 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4845.000000,163.000000, 0.967452,0.032548, 605 chr1 2626130 2626131 rs532999963 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, 605 chr1 2626260 2626261 rs28707614 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,HGSV,SSAHASNP,SSMP, 2 A,G, 2462.000000,2546.000000, 0.491613,0.508387, 605 chr1 2626339 2626340 rs28446773 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,ILLUMINA,SSAHASNP, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 605 chr1 2626340 2626341 rs28495110 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 G,T, 3574.000000,1434.000000, 0.713658,0.286342, 605 chr1 2626347 2626348 rs573151336 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, 605 chr1 2626357 2626358 rs28569449 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,SSAHASNP,SSMP, 2 C,G, 4149.000000,859.000000, 0.828474,0.171526, 605 chr1 2626428 2626429 rs372221943 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, 605 chr1 2626472 2626473 rs556878752 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 1428.000000,3580.000000, 0.285144,0.714856, 605 chr1 2626493 2626494 rs7544898 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,SSMP,WI_SSAHASNP, 2 A,C, 258.000000,4750.000000, 0.051518,0.948482, 605 chr1 2626552 2626553 rs573916001 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, 605 chr1 2626759 2626760 rs558738568 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 154.000000,4854.000000, 0.030751,0.969249, 605 chr1 2626769 2626770 rs537906427 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, 605 chr1 2626796 2626797 rs6678872 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 A,C, 108.000000,4900.000000, 0.021566,0.978435, 605 chr1 2627093 2627094 rs28486014 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 A,C, 2608.000000,2400.000000, 0.520767,0.479233, 605 chr1 2627101 2627102 rs201857168 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, 605 chr1 2627116 2627117 rs374764424 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 140.000000,4868.000000, 0.027955,0.972045, 605 chr1 2627131 2627132 rs570214147 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4930.000000,78.000000, 0.984425,0.015575, 605 chr1 2627196 2627197 rs563680365 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 605 chr1 2627197 2627198 rs28585375 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,T, 3666.000000,1342.000000, 0.732029,0.267971, 605 chr1 2627234 2627235 rs542125680 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 148.000000,4860.000000, 0.029553,0.970447, 605 chr1 2627249 2627250 rs527511643 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 152.000000,4856.000000, 0.030351,0.969649, 605 chr1 2627412 2627413 rs4648684 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,HGSV,PJP,WI_SSAHASNP, 2 C,T, 2614.000000,2394.000000, 0.521965,0.478035, 605 chr1 2627437 2627438 rs549481227 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, 605 chr1 2627660 2627661 rs56279030 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,GMI,HGSV,ILLUMINA-UK,SSMP, 2 C,G, 878.000000,4130.000000, 0.175319,0.824681, 605 chr1 2627665 2627666 rs28536771 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,BUSHMAN,ENSEMBL,SSAHASNP,SSMP, 2 A,G, 4813.000000,195.000000, 0.961062,0.038938, 605 chr1 2627766 2627767 rs543642651 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 605 chr1 2627769 2627770 rs141615758 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,PJP,SSMP, 2 A,C, 1364.000000,3644.000000, 0.272364,0.727636, 605 chr1 2627798 2627799 rs55801140 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,GMI,HGSV,SSMP, 2 C,G, 4162.000000,846.000000, 0.831070,0.168930, 605 chr1 2627807 2627808 rs28535687 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 C,G, 285.000000,4723.000000, 0.056909,0.943091, 605 chr1 2627832 2627833 rs75121843 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,GMI,SSMP, 2 C,T, 597.000000,4411.000000, 0.119209,0.880791, 605 chr1 2627857 2627858 rs557088582 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4872.000000,136.000000, 0.972844,0.027157, 605 chr1 2627906 2627907 rs201847726 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,T, 895.000000,4113.000000, 0.178714,0.821286, 605 chr1 2628087 2628088 rs76143307 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ENSEMBL, 2 A,T, 3537.000000,1471.000000, 0.706270,0.293730, 605 chr1 2628242 2628243 rs28703284 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSAHASNP,SSMP, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 605 chr1 2628249 2628250 rs546792721 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 605 chr1 2628310 2628311 rs28437465 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSAHASNP,SSMP, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 605 chr1 2628325 2628326 rs28655771 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,BL,ENSEMBL,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 A,G, 725.000000,4283.000000, 0.144768,0.855232, 605 chr1 2628327 2628328 rs28676717 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,SSAHASNP,SSMP, 2 G,T, 4612.000000,396.000000, 0.920927,0.079074, 605 chr1 2628459 2628460 rs28368996 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,GMI,SSAHASNP,SSMP, 2 C,T, 4306.000000,702.000000, 0.859824,0.140176, 605 chr1 2628598 2628599 rs61766471 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCMHGSC_JDW,SSMP, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, 605 chr1 2628696 2628697 rs28411025 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,G, 1752.000000,3256.000000, 0.349840,0.650160, 605 chr1 2628716 2628717 rs78567540 0 + A A A/C genomic single by-frequency 0.48 0.09798 intron exact 1 1 ENSEMBL, 2 A,C, 4.000000,6.000000, 0.400000,0.600000, 605 chr1 2628795 2628796 rs7539192 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 605 chr1 2628824 2628825 rs78689939 0 + G G C/G genomic single by-cluster,by-frequency 0.486111 0.082168 intron exact 1 4 ENSEMBL,GMI,PJP,SSMP, 2 C,G, 7.000000,5.000000, 0.583333,0.416667, 605 chr1 2628915 2628916 rs79263079 0 + T T A/T genomic single by-frequency 0.486111 0.082168 intron exact 1 3 BL,ENSEMBL,GMI, 2 A,T, 7.000000,5.000000, 0.583333,0.416667, 605 chr1 2628923 2628924 rs78609587 0 + C C C/T genomic single by-frequency 0.486111 0.082168 intron exact 1 1 ENSEMBL, 2 C,T, 5.000000,7.000000, 0.416667,0.583333, 605 chr1 2628962 2628963 rs61766474 0 + A A A/T genomic single by-cluster,by-frequency 0.5 0 intron exact 1 6 BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI, 2 A,T, 7.000000,7.000000, 0.500000,0.500000, 605 chr1 2629001 2629002 rs4648685 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,C, 128.000000,4880.000000, 0.025559,0.974441, 605 chr1 2629020 2629021 rs558148063 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, 605 chr1 2629227 2629228 rs28368434 0 + T T G/T genomic single by-frequency 0.486111 0.082168 intron exact 1 6 BCMHGSC_JDW,BUSHMAN,ENSEMBL,GMI,PJP,SSAHASNP, 2 G,T, 7.000000,5.000000, 0.583333,0.416667, 605 chr1 2629335 2629336 rs61766477 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCMHGSC_JDW,ENSEMBL, 2 C,T, 4167.000000,841.000000, 0.832069,0.167931, 605 chr1 2629462 2629463 rs550826171 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, 605 chr1 2629463 2629464 rs201910133 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 A,G, 809.000000,4199.000000, 0.161542,0.838458, 605 chr1 2629466 2629467 rs536289594 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 119.000000,4889.000000, 0.023762,0.976238, 605 chr1 2629561 2629562 rs28553439 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 A,C, 201.000000,4807.000000, 0.040136,0.959864, 605 chr1 2629606 2629607 rs61766480 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCMHGSC_JDW,GMI, 2 C,T, 2340.000000,2668.000000, 0.467252,0.532748, 605 chr1 2629647 2629648 rs201725264 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,G, 4862.000000,146.000000, 0.970847,0.029153, 605 chr1 2629715 2629716 rs11516512 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSMP, 2 A,C, 2432.000000,2576.000000, 0.485623,0.514377, 605 chr1 2629734 2629735 rs28523904 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,SSAHASNP, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 605 chr1 2629807 2629808 rs546725514 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 139.000000,4869.000000, 0.027756,0.972244, 605 chr1 2629810 2629811 rs28450578 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,SSAHASNP, 2 A,G, 221.000000,4787.000000, 0.044129,0.955871, 605 chr1 2629846 2629847 rs567484209 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 54.000000,4954.000000, 0.010783,0.989217, 605 chr1 2629897 2629898 rs558526701 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4871.000000,137.000000, 0.972644,0.027356, 605 chr1 2629950 2629951 rs11516513 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,GMI,HGSV,PJP,SC_SNP,SSMP, 2 A,G, 2373.000000,2635.000000, 0.473842,0.526158, 605 chr1 2630094 2630095 rs6604996 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,WI_SSAHASNP, 2 C,G, 223.000000,4785.000000, 0.044529,0.955471, 605 chr1 2630174 2630175 rs114848071 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,PJP,SSMP, 2 G,T, 118.000000,4890.000000, 0.023562,0.976438, 605 chr1 2630209 2630210 rs12740972 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,GMI,HGSV,PJP,SSAHASNP,SSMP, 2 C,G, 3590.000000,1418.000000, 0.716853,0.283147, 605 chr1 2630272 2630273 rs111589247 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,GMI, 2 C,G, 4739.000000,269.000000, 0.946286,0.053714, 605 chr1 2630329 2630330 rs542199338 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4872.000000,136.000000, 0.972844,0.027157, 605 chr1 2630407 2630408 rs12741311 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 A,C, 1433.000000,3575.000000, 0.286142,0.713858, 605 chr1 2630463 2630464 rs561325143 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4867.000000,141.000000, 0.971845,0.028155, 605 chr1 2630529 2630530 rs28376921 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,GMI,SSAHASNP, 2 A,C, 4677.000000,331.000000, 0.933906,0.066094, 605 chr1 2630590 2630591 rs28507126 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ENSEMBL,GMI,SSAHASNP,SSMP, 2 C,T, 283.000000,4725.000000, 0.056510,0.943490, 605 chr1 2630614 2630615 rs563941914 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 605 chr1 2630659 2630660 rs566130145 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, 605 chr1 2630692 2630693 rs77918888 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,BUSHMAN,GMI,MPI_MOLGEN,SSMP, 2 A,C, 4735.000000,273.000000, 0.945487,0.054513, 605 chr1 2630728 2630729 rs4648687 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 1429.000000,3579.000000, 0.285343,0.714657, 605 chr1 2630897 2630898 rs551842088 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 605 chr1 2630913 2630914 rs34608061 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ABI, 2 A,C, 64.000000,4944.000000, 0.012780,0.987220, 605 chr1 2630925 2630926 rs12742092 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,T, 3589.000000,1419.000000, 0.716653,0.283347, 605 chr1 2630974 2630975 rs187708054 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,MPI_MOLGEN,SSMP, 2 C,G, 4015.000000,993.000000, 0.801717,0.198283, 605 chr1 2631113 2631127 rs546121307 0 + CCTGGAGCAGCGCC CCTGGAGCAGCGCC -/CCTGGAGCAGCGCC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CCTGGAGCAGCGCC, 117.000000,4891.000000, 0.023363,0.976637, 605 chr1 2631123 2631124 rs534941477 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 137.000000,4871.000000, 0.027356,0.972644, 605 chr1 2631286 2631287 rs560548475 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4868.000000,140.000000, 0.972045,0.027955, 605 chr1 2631293 2631294 rs369075316 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 4916.000000,92.000000, 0.981629,0.018371, 605 chr1 2631362 2631363 rs12746501 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4676.000000,332.000000, 0.933706,0.066294, maf-5-some-pop,maf-5-all-pops 605 chr1 2631370 2631371 rs575543945 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 605 chr1 2631436 2631437 rs113547966 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,SSMP, 2 C,G, 219.000000,4789.000000, 0.043730,0.956270, 605 chr1 2631469 2631470 rs28521907 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 283.000000,4725.000000, 0.056510,0.943490, 605 chr1 2631485 2631486 rs12746691 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,T, 3576.000000,1432.000000, 0.714058,0.285942, 605 chr1 2631553 2631554 rs12746841 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,G, 3579.000000,1429.000000, 0.714657,0.285343, maf-5-some-pop,maf-5-all-pops 605 chr1 2631645 2631646 rs28620736 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSAHASNP,SSMP, 2 C,G, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop,maf-5-all-pops 605 chr1 2631714 2631715 rs61766505 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,SSMP, 2 A,T, 861.000000,4147.000000, 0.171925,0.828075, 605 chr1 2631731 2631732 rs11516514 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 862.000000,4146.000000, 0.172125,0.827875, 605 chr1 2631803 2631804 rs12743419 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 1464.000000,3544.000000, 0.292332,0.707668, 605 chr1 2631919 2631920 rs138005266 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 141.000000,4867.000000, 0.028155,0.971845, 605 chr1 2632015 2632016 rs28647750 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,G, 3287.000000,1721.000000, 0.656350,0.343650, 605 chr1 2632018 2632019 rs533691243 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4905.000000,103.000000, 0.979433,0.020567, 605 chr1 2632096 2632097 rs12751643 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,C, 1451.000000,3557.000000, 0.289736,0.710264, 605 chr1 2632239 2632240 rs549710443 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4945.000000,63.000000, 0.987420,0.012580, 605 chr1 2632321 2632322 rs184742270 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 147.000000,4861.000000, 0.029353,0.970647, 605 chr1 2632356 2632357 rs112030561 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,EVA-GONL, 2 C,G, 4945.000000,63.000000, 0.987420,0.012580, 605 chr1 2632372 2632373 rs374391648 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 4872.000000,136.000000, 0.972844,0.027157, 605 chr1 2632379 2632380 rs377756586 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, 605 chr1 2632601 2632602 rs571339795 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 605 chr1 2684630 2684631 rs538942044 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 605 chr1 2686182 2686183 rs199671872 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 G,T, 2628.000000,2380.000000, 0.524760,0.475240, 605 chr1 2686208 2686209 rs372201587 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, 605 chr1 2686219 2686220 rs562180857 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 605 chr1 2686237 2686238 rs532011832 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4952.000000,56.000000, 0.988818,0.011182, 605 chr1 2686561 2686562 rs576516979 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 90.000000,4918.000000, 0.017971,0.982029, 605 chr1 2686603 2686604 rs376019577 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 196.000000,4812.000000, 0.039137,0.960863, 605 chr1 2687691 2687692 rs541819026 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4558.000000,450.000000, 0.910144,0.089856, 605 chr1 2687794 2687795 rs533462330 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 120.000000,4888.000000, 0.023962,0.976038, 605 chr1 2688162 2688163 rs4601526 0 + G G G/T genomic single by-cluster,by-frequency,by-hapmap 0.032958 0.124067 intron exact 1 10 BCMHGSC_JDW,BGI,BL,BUSHMAN,GMI,ILLUMINA,KRIBB_YJKIM,PJP,SC_JCM,TISHKOFF, 2 G,T, 3.000000,176.000000, 0.016760,0.983240, 605 chr1 2688594 2688595 rs543997148 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4918.000000,90.000000, 0.982029,0.017971, 605 chr1 2688674 2688675 rs559480543 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4909.000000,99.000000, 0.980232,0.019768, 605 chr1 2688818 2688819 rs113033327 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 605 chr1 2689172 2689173 rs551371495 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, 605 chr1 2689575 2689576 rs575670205 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4946.000000,62.000000, 0.987620,0.012380, 605 chr1 2689933 2689934 rs569316757 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4923.000000,85.000000, 0.983027,0.016973, 605 chr1 2690357 2690358 rs374564329 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 4761.000000,247.000000, 0.950679,0.049321, 605 chr1 2691811 2691812 rs71630991 0 + C C C/T genomic single by-cluster,by-frequency 0.5 0 intron exact 1 5 COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP, 2 C,T, 5.000000,5.000000, 0.500000,0.500000, 605 chr1 2692476 2692477 rs71632380 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BILGI_BIOE,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 A,G, 1480.000000,3528.000000, 0.295527,0.704473, 605 chr1 2692486 2692487 rs71632381 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 G,T, 3599.000000,1409.000000, 0.718650,0.281350, 605 chr1 2692784 2692785 rs111997621 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,GMI,PJP,SSMP, 2 A,C, 1403.000000,3605.000000, 0.280152,0.719848, 605 chr1 2693120 2693121 rs142042178 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,PJP,SSMP, 2 A,T, 2610.000000,2398.000000, 0.521166,0.478834, 605 chr1 2693264 2693265 rs201062007 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 2477.000000,2531.000000, 0.494609,0.505391, 605 chr1 2693797 2693798 rs370190464 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 4906.000000,102.000000, 0.979633,0.020367, 605 chr1 2693830 2693831 rs569655125 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 605 chr1 2693925 2693926 rs115565117 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,maf-5-all-pops 605 chr1 2693955 2693956 rs10909957 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3583.000000,1425.000000, 0.715455,0.284545, maf-5-some-pop,maf-5-all-pops 605 chr1 2694009 2694010 rs116773054 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, maf-5-some-pop,maf-5-all-pops 605 chr1 2694411 2694412 rs116633804 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 605 chr1 2694495 2694496 rs6424062 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1430.000000,3578.000000, 0.285543,0.714457, maf-5-some-pop,maf-5-all-pops 605 chr1 2695051 2695052 rs116316585 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 605 chr1 2695686 2695687 rs4648448 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2640.000000,2368.000000, 0.527157,0.472843, maf-5-some-pop,maf-5-all-pops 605 chr1 2696014 2696015 rs112520035 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 364.000000,4644.000000, 0.072684,0.927316, 605 chr1 2696139 2696140 rs150878380 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 605 chr1 2696337 2696338 rs144310741 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 605 chr1 2696581 2696582 rs144142039 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 605 chr1 2697541 2697542 rs11590361 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CSHL-HAPMAP,EVA-GONL,ILLUMINA, 2 A,T, 4833.000000,175.000000, 0.965056,0.034944, 605 chr1 2697712 2697713 rs4648459 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 293.000000,135.000000, 0.684579,0.315421, maf-5-some-pop,maf-5-all-pops 605 chr1 2697965 2697966 rs141999953 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 54.000000,4954.000000, 0.010783,0.989217, 605 chr1 2698210 2698211 rs149433064 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 605 chr1 2698356 2698357 rs115091241 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4929.000000,79.000000, 0.984225,0.015775, 605 chr1 2698949 2698950 rs6666430 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2352.000000,2656.000000, 0.469649,0.530351, maf-5-some-pop,maf-5-all-pops 605 chr1 2699126 2699127 rs114921512 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 605 chr1 2699334 2699335 rs140020189 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 605 chr1 2699773 2699774 rs139602622 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 54.000000,4954.000000, 0.010783,0.989217, 605 chr1 2700116 2700117 rs4648502 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3579.000000,1429.000000, 0.714657,0.285343, maf-5-some-pop,maf-5-all-pops 605 chr1 2700336 2700337 rs57158430 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 91.000000,4917.000000, 0.018171,0.981829, 605 chr1 2700371 2700372 rs4648390 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3622.000000,1386.000000, 0.723243,0.276757, maf-5-some-pop,maf-5-all-pops 605 chr1 2700833 2700834 rs151147244 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,C, 4909.000000,99.000000, 0.980232,0.019768, 605 chr1 2700968 2700969 rs112793604 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4644.000000,364.000000, 0.927316,0.072684, maf-5-some-pop,maf-5-all-pops 605 chr1 2701089 2701090 rs140589285 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 605 chr1 2701111 2701112 rs10909970 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop,maf-5-all-pops 605 chr1 2701545 2701546 rs587702211 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 133.000000,4875.000000, 0.026557,0.973442, 605 chr1 2701554 2701555 rs116284760 0 + C C C/T genomic single by-cluster,by-frequency,by-1000genomes 0.227462 0.248982 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 220.000000,20.000000, 0.916667,0.083333, maf-5-some-pop,maf-5-all-pops 605 chr1 2701815 2701816 rs1456462 0 - C C C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 605 chr1 2702132 2702133 rs141330810 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4954.000000,54.000000, 0.989217,0.010783, 605 chr1 2702230 2702231 rs12067292 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop,maf-5-all-pops 605 chr1 2702371 2702372 rs10910011 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop,maf-5-all-pops 605 chr1 2703017 2703018 rs72849581 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 605 chr1 2703156 2703157 rs58996289 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 605 chr1 2703466 2703467 rs74047781 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 605 chr1 2703485 2703486 rs59309066 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop,maf-5-all-pops 605 chr1 2704111 2704112 rs56328393 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,BUSHMAN,CORNELL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop,maf-5-all-pops 605 chr1 2704124 2704125 rs61737584 0 + C C C/T genomic single unknown 0 0 missense exact 1 2 1000GENOMES,CORNELL, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 605 chr1 2704470 2704471 rs12748553 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3584.000000,1424.000000, 0.715655,0.284345, maf-5-some-pop,maf-5-all-pops 605 chr1 2704473 2704474 rs10909826 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 360.000000,4648.000000, 0.071885,0.928115, maf-5-some-pop 605 chr1 2704697 2704698 rs114858168 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, 605 chr1 2704917 2704918 rs55972083 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4292.000000,716.000000, 0.857029,0.142971, maf-5-some-pop,maf-5-all-pops 605 chr1 2705039 2705040 rs111933268 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,C, 359.000000,4649.000000, 0.071685,0.928315, 605 chr1 2705714 2705715 rs116662217 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 605 chr1 2705715 2705716 rs12750376 0 + G G G/T genomic single by-cluster,by-frequency,by-hapmap 0.022985 0.104711 intron exact 1 3 ILLUMINA,KRIBB_YJKIM,SSAHASNP, 2 G,T, 2.000000,170.000000, 0.011628,0.988372, 605 chr1 2706155 2706156 rs370237500 0 + T T A/T genomic single unknown 0 0 missense exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 54.000000,4954.000000, 0.010783,0.989217, 605 chr1 2706360 2706361 rs146841190 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 4688.000000,320.000000, 0.936102,0.063898, 605 chr1 2706644 2706645 rs12041619 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 605 chr1 2707437 2707438 rs7526311 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3584.000000,1424.000000, 0.715655,0.284345, maf-5-some-pop,maf-5-all-pops 605 chr1 2707709 2707710 rs114731419 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop,maf-5-all-pops 605 chr1 2707956 2707957 rs57572926 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BCMHGSC_JDW,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,T, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop,maf-5-all-pops 605 chr1 2708279 2708280 rs58782253 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop,maf-5-all-pops 605 chr1 2708429 2708430 rs10909839 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2365.000000,2643.000000, 0.472244,0.527756, maf-5-some-pop,maf-5-all-pops 605 chr1 2708471 2708472 rs116397823 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 150.000000,4858.000000, 0.029952,0.970048, maf-5-some-pop,maf-5-all-pops 605 chr1 2708502 2708503 rs77381828 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 605 chr1 2708517 2708518 rs72849587 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop 605 chr1 2708571 2708571 rs528967142 0 + - - -/TTT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TTT, 122.000000,4886.000000, 0.024361,0.975639, 605 chr1 2708746 2708747 rs56118932 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 306.000000,4702.000000, 0.061102,0.938898, maf-5-some-pop,maf-5-all-pops 605 chr1 2709163 2709164 rs4648356 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2344.000000,2664.000000, 0.468051,0.531949, maf-5-some-pop,maf-5-all-pops,microattr-tpa 605 chr1 2709204 2709205 rs57033097 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop,maf-5-all-pops 605 chr1 2709391 2709392 rs12044475 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1480.000000,3528.000000, 0.295527,0.704473, maf-5-some-pop,maf-5-all-pops 605 chr1 2709575 2709576 rs12024170 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3585.000000,1423.000000, 0.715855,0.284145, maf-5-some-pop,maf-5-all-pops 605 chr1 2710001 2710002 rs6687680 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1491.000000,3517.000000, 0.297724,0.702276, maf-5-some-pop,maf-5-all-pops 605 chr1 2710376 2710377 rs67373773 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1429.000000,3579.000000, 0.285343,0.714657, maf-5-some-pop,maf-5-all-pops 605 chr1 2710713 2710714 rs55657723 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 605 chr1 2710894 2710895 rs12062827 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop,maf-5-all-pops 605 chr1 2711501 2711502 rs72849590 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 605 chr1 2711534 2711535 rs550617380 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 91.000000,4917.000000, 0.018171,0.981829, 605 chr1 2711632 2711633 rs58130227 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,SSMP, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 605 chr1 2712056 2712057 rs60002840 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 605 chr1 2712169 2712170 rs12731995 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3518.000000,1490.000000, 0.702476,0.297524, maf-5-some-pop,maf-5-all-pops 605 chr1 2712403 2712404 rs116424731 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 605 chr1 2712781 2712782 rs57136100 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 605 chr1 2713394 2713394 rs137919479 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSIP,SSMP, 2 -,A, 4705.000000,303.000000, 0.939497,0.060503, 605 chr1 2714025 2714025 rs150783447 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP, 2 -,C, 4872.000000,136.000000, 0.972844,0.027157, 605 chr1 2714060 2714061 rs72849592 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop,maf-5-all-pops 605 chr1 2714156 2714157 rs10909851 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop 605 chr1 2714738 2714739 rs537872250 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4885.000000,123.000000, 0.975439,0.024561, 605 chr1 2714962 2714963 rs58991131 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 A,C, 89.000000,4919.000000, 0.017772,0.982228, 605 chr1 2715147 2715148 rs192339013 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 248.000000,4760.000000, 0.049521,0.950479, 605 chr1 2715679 2715680 rs116745169 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 605 chr1 2716241 2716242 rs114392564 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 605 chr1 2716293 2716294 rs116516557 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 605 chr1 2716906 2716907 rs751358 0 - G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 605 chr1 2717095 2717096 rs61750876 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,CORNELL, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop,maf-5-all-pops 605 chr1 2717469 2717470 rs60389769 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2189.000000,2819.000000, 0.437101,0.562899, maf-5-some-pop,maf-5-all-pops 605 chr1 2717959 2717960 rs145473207 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,C, 158.000000,4850.000000, 0.031549,0.968450, 605 chr1 2718024 2718025 rs76031446 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 605 chr1 2718489 2718490 rs897627 0 - T T A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 17 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 4 A,C,G,T, 839.000000,4169.000000,4169.000000,839.000000, 0.083766,0.416234,0.416234,0.083766, maf-5-some-pop,maf-5-all-pops 605 chr1 2718693 2718694 rs116827791 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 605 chr1 2718703 2718704 rs74047786 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop,maf-5-all-pops 605 chr1 2719015 2719016 rs145038982 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 4924.000000,84.000000, 0.983227,0.016773, 605 chr1 2719030 2719031 rs141106710 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 605 chr1 2719544 2719545 rs114731629 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 605 chr1 2719903 2719904 rs12725202 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1484.000000,3524.000000, 0.296326,0.703674, maf-5-some-pop,maf-5-all-pops 605 chr1 2721147 2721148 rs114924240 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 605 chr1 2721456 2721457 rs114424985 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 605 chr1 2721550 2721551 rs56687076 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 605 chr1 2722019 2722020 rs74050616 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 605 chr1 2722164 2722165 rs57699977 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, 605 chr1 2722420 2722421 rs114396274 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 605 chr1 2722821 2722822 rs56406535 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop 605 chr1 2722847 2722848 rs6692145 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3492.000000,1516.000000, 0.697284,0.302716, maf-5-some-pop,maf-5-all-pops 605 chr1 2722899 2722900 rs115193445 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop,maf-5-all-pops 605 chr1 2723171 2723172 rs112302259 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4793.000000,215.000000, 0.957069,0.042931, maf-5-some-pop,maf-5-all-pops 605 chr1 2723192 2723193 rs72646048 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 G,T, 4916.000000,92.000000, 0.981629,0.018371, 605 chr1 2723202 2723203 rs116205920 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 605 chr1 2723213 2723214 rs4648450 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1976.000000,3032.000000, 0.394569,0.605431, maf-5-some-pop,maf-5-all-pops 605 chr1 2723867 2723868 rs115937457 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,maf-5-all-pops 605 chr1 2724180 2724181 rs185574828 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 605 chr1 2724189 2724190 rs72851205 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4573.000000,435.000000, 0.913139,0.086861, maf-5-some-pop,maf-5-all-pops 605 chr1 2724698 2724699 rs72851206 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 703.000000,4305.000000, 0.140375,0.859625, maf-5-some-pop,maf-5-all-pops 605 chr1 2725228 2725229 rs57585474 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 G,T, 57.000000,4951.000000, 0.011382,0.988618, 605 chr1 2725249 2725250 rs55958200 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4541.000000,467.000000, 0.906749,0.093251, maf-5-some-pop,maf-5-all-pops 605 chr1 2725336 2725337 rs114936006 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 605 chr1 2725474 2725475 rs7537581 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2719.000000,2289.000000, 0.542931,0.457069, maf-5-some-pop,maf-5-all-pops 605 chr1 2725502 2725503 rs114414699 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 605 chr1 2725503 2725504 rs79412864 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 605 chr1 2725506 2725507 rs56038961 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,SSMP, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 605 chr1 2725572 2725573 rs556572303 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,G, 113.000000,4895.000000, 0.022564,0.977436, 605 chr1 2725577 2725578 rs566074600 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 112.000000,4896.000000, 0.022364,0.977636, 605 chr1 2725581 2725593 rs201513086 0 + GTGGGCCTGGCT GTGGGCCTGGCT -/GTGGGCCTGGCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GTGGGCCTGGCT, 117.000000,4891.000000, 0.023363,0.976637, 605 chr1 2725630 2725631 rs57323709 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 605 chr1 2725933 2725934 rs115773321 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 605 chr1 2725951 2725952 rs7538063 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3701.000000,1307.000000, 0.739018,0.260982, maf-5-some-pop,maf-5-all-pops 605 chr1 2726057 2726058 rs72851211 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 414.000000,4594.000000, 0.082668,0.917332, maf-5-some-pop,maf-5-all-pops 605 chr1 2726162 2726163 rs72851212 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 453.000000,4555.000000, 0.090455,0.909545, maf-5-some-pop,maf-5-all-pops 605 chr1 2726190 2726191 rs72851213 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 453.000000,4555.000000, 0.090455,0.909545, maf-5-some-pop,maf-5-all-pops 605 chr1 2726406 2726407 rs192653909 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 605 chr1 2726622 2726623 rs116451513 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 605 chr1 2726769 2726770 rs114976120 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop 605 chr1 2727033 2727034 rs72851214 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF, 2 G,T, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 605 chr1 2727377 2727378 rs189528644 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 70.000000,4938.000000, 0.013978,0.986022, 605 chr1 2727505 2727506 rs77067862 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 605 chr1 2727637 2727638 rs10909879 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1423.000000,3585.000000, 0.284145,0.715855, maf-5-some-pop 605 chr1 2727803 2727804 rs10909880 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3577.000000,1431.000000, 0.714257,0.285743, maf-5-some-pop 605 chr1 2728454 2728455 rs113026893 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 605 chr1 2728604 2728605 rs59188097 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,HGSV,LUNTER,PJP,SSMP, 2 -,A, 594.000000,4414.000000, 0.118610,0.881390, 605 chr1 2728615 2728616 rs146056920 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4888.000000,120.000000, 0.976038,0.023962, 605 chr1 2728627 2728628 rs115642373 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 605 chr1 2729037 2729038 rs57917493 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4447.000000,561.000000, 0.887979,0.112021, maf-5-some-pop,maf-5-all-pops 605 chr1 2729234 2729235 rs72851218 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4306.000000,702.000000, 0.859824,0.140176, maf-5-some-pop,maf-5-all-pops 605 chr1 2729250 2729251 rs60513129 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4560.000000,448.000000, 0.910543,0.089457, maf-5-some-pop,maf-5-all-pops 605 chr1 2729548 2729549 rs72851219 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 605 chr1 2729697 2729698 rs74050627 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4301.000000,707.000000, 0.858826,0.141174, maf-5-some-pop,maf-5-all-pops 605 chr1 2729909 2729910 rs79878707 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 454.000000,4554.000000, 0.090655,0.909345, maf-5-some-pop,maf-5-all-pops 605 chr1 2730009 2730010 rs116453049 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 605 chr1 2730034 2730035 rs7413570 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,SC_JCM,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 605 chr1 2730611 2730612 rs146940813 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 605 chr1 2730649 2730650 rs115380550 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 605 chr1 2730660 2730661 rs112129305 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 G,T, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 605 chr1 2730711 2730712 rs59930694 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop,maf-5-all-pops 605 chr1 2731000 2731001 rs114814300 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 605 chr1 2731402 2731403 rs72851222 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 493.000000,4515.000000, 0.098443,0.901558, maf-5-some-pop 605 chr1 2731420 2731421 rs74050631 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop 605 chr1 2732021 2732022 rs79590386 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 605 chr1 2732295 2732296 rs72851224 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 605 chr1 2732680 2732681 rs10909888 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop 605 chr1 2732801 2732802 rs10909889 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop 605 chr1 2733090 2733091 rs76080738 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop,maf-5-all-pops 605 chr1 2733209 2733210 rs112394492 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop,maf-5-all-pops 605 chr1 2733461 2733462 rs12096660 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,SC_SNP,TISHKOFF, 2 C,T, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop,maf-5-all-pops 605 chr1 2733586 2733587 rs10909890 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 676.000000,4332.000000, 0.134984,0.865016, maf-5-some-pop 605 chr1 2734795 2734796 rs111536100 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 84.000000,4924.000000, 0.016773,0.983227, 605 chr1 2734873 2734874 rs12023160 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop,maf-5-all-pops 605 chr1 2735168 2735169 rs10909894 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4807.000000,201.000000, 0.959864,0.040136, maf-5-some-pop 605 chr1 2735265 2735266 rs34936518 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BILGI_BIOE,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 1420.000000,3588.000000, 0.283546,0.716454, 605 chr1 2735417 2735418 rs56820613 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4450.000000,558.000000, 0.888578,0.111422, maf-5-some-pop 605 chr1 2735462 2735463 rs113646038 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 605 chr1 2735819 2735820 rs12565258 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4452.000000,556.000000, 0.888978,0.111022, maf-5-some-pop 605 chr1 2735972 2735973 rs61766528 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 605 chr1 2735993 2736003 rs146232266 0 + TGCACACATT TGCACACATT -/TGCACACATT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,GMI, 2 -,TGCACACATT, 561.000000,4447.000000, 0.112021,0.887979, 605 chr1 2736153 2736155 rs200411901 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,CA, 67.000000,4941.000000, 0.013379,0.986621, 605 chr1 2736251 2736252 rs115638194 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 605 chr1 2736318 2736321 rs200796418 0 + CTG CTG -/CTG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,CTG, 118.000000,4890.000000, 0.023562,0.976438, 605 chr1 2736382 2736383 rs531696629 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, 605 chr1 2736909 2736910 rs527724990 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, 605 chr1 2736962 2736963 rs72851230 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 611.000000,4397.000000, 0.122005,0.877995, maf-5-some-pop 605 chr1 2737242 2737250 rs200833503 0 + CCAGGGGG CCAGGGGG -/CCAGGGGG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CCAGGGGG, 153.000000,4855.000000, 0.030551,0.969449, 605 chr1 2737485 2737486 rs4515734 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop 605 chr1 2737701 2737702 rs138234418 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4909.000000,99.000000, 0.980232,0.019768, 605 chr1 2738074 2738075 rs72851231 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4393.000000,615.000000, 0.877196,0.122804, maf-5-some-pop,maf-5-all-pops 605 chr1 2738092 2738093 rs138571641 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 605 chr1 2738264 2738265 rs11584658 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3558.000000,1450.000000, 0.710463,0.289537, maf-5-some-pop,maf-5-all-pops 605 chr1 2738416 2738417 rs10909904 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 720.000000,4288.000000, 0.143770,0.856230, maf-5-some-pop 605 chr1 2738666 2738687 rs148827013 0 + GTGTGCACTGGGGCGGGGCGG GTGTGCACTGGGGCGGGGCGG -/GTGTGCACTGGGGCGGGGCGG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GTGTGCACTGGGGCGGGGCGG, 280.000000,4728.000000, 0.055911,0.944089, 605 chr1 2739122 2739123 rs12025517 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 864.000000,4144.000000, 0.172524,0.827476, maf-5-some-pop,maf-5-all-pops 605 chr1 2739378 2739379 rs77725047 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF, 2 C,G, 397.000000,4611.000000, 0.079273,0.920727, maf-5-some-pop 605 chr1 2739932 2739933 rs6665757 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop 605 chr1 2739971 2739972 rs6679232 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4470.000000,538.000000, 0.892572,0.107428, maf-5-some-pop 605 chr1 2740683 2740684 rs79699244 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4476.000000,532.000000, 0.893770,0.106230, maf-5-some-pop,maf-5-all-pops 605 chr1 2741081 2741082 rs113040043 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 605 chr1 2741114 2741115 rs148248683 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 605 chr1 2741253 2741254 rs74571334 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4639.000000,369.000000, 0.926318,0.073682, maf-5-some-pop 605 chr1 2741372 2741373 rs137958885 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 605 chr1 2741593 2741594 rs142437743 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, 605 chr1 2741873 2741874 rs114924677 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 605 chr1 2742490 2742491 rs12071313 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4599.000000,409.000000, 0.918331,0.081669, maf-5-some-pop 605 chr1 2742533 2742534 rs115195719 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop,maf-5-all-pops 605 chr1 2742598 2742598 rs544386575 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,G, 4904.000000,104.000000, 0.979233,0.020767, 605 chr1 2742793 2742794 rs144693721 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, 605 chr1 2742892 2742893 rs76486565 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,EVA-GONL,SSMP, 2 C,T, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop,maf-5-all-pops 605 chr1 2743007 2743008 rs10909914 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4644.000000,364.000000, 0.927316,0.072684, maf-5-some-pop,maf-5-all-pops 605 chr1 2743145 2743146 rs114862763 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 605 chr1 2743249 2743250 rs115309603 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 605 chr1 2743491 2743492 rs58124032 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 605 chr1 2744236 2744237 rs116344153 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 605 chr1 2744413 2744414 rs115471318 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop 605 chr1 2744415 2744416 rs56400103 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,HGSV,TISHKOFF, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 605 chr1 2744709 2744710 rs12747919 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1414.000000,3594.000000, 0.282348,0.717652, 605 chr1 2744830 2744831 rs144071958 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 605 chr1 2744876 2744877 rs12125787 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4305.000000,703.000000, 0.859625,0.140375, maf-5-some-pop,maf-5-all-pops 605 chr1 2744900 2744901 rs12030362 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 409.000000,4599.000000, 0.081669,0.918331, 605 chr1 2744903 2744904 rs144729808 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 605 chr1 2745085 2745086 rs114596841 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 605 chr1 2745807 2745808 rs76925805 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4389.000000,619.000000, 0.876398,0.123602, maf-5-some-pop 605 chr1 2745882 2745883 rs4609377 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2466.000000,2542.000000, 0.492412,0.507588, maf-5-some-pop,maf-5-all-pops 605 chr1 2746065 2746066 rs1001620 0 - G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 605 chr1 2746361 2746362 rs114075869 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 605 chr1 2746441 2746442 rs76600800 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop,maf-5-all-pops 605 chr1 2746661 2746662 rs72851237 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 605 chr1 2746905 2746906 rs181477376 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 605 chr1 2747420 2747421 rs75553289 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 605 chr1 2747637 2747638 rs10909929 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 193.000000,4815.000000, 0.038538,0.961462, maf-5-some-pop 605 chr1 2748456 2748457 rs59895135 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 605 chr1 2748634 2748635 rs75958134 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 605 chr1 2748963 2748964 rs114498331 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 605 chr1 2749441 2749442 rs77398542 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,SSMP, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 605 chr1 2749613 2749614 rs10797389 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop 605 chr1 2750177 2750178 rs10909934 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 605 chr1 2750906 2750907 rs59498881 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 G,T, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop,maf-5-all-pops 605 chr1 2751236 2751237 rs72646052 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSMP, 2 A,G, 226.000000,4782.000000, 0.045128,0.954872, maf-5-some-pop,maf-5-all-pops 605 chr1 2751363 2751364 rs75404797 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 605 chr1 2751779 2751780 rs116287910 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4922.000000,86.000000, 0.982827,0.017173, 605 chr1 2752098 2752099 rs146298235 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, 605 chr1 2752220 2752221 rs12091684 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 C,G, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 605 chr1 2752264 2752265 rs7511879 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3074.000000,1934.000000, 0.613818,0.386182, maf-5-some-pop,maf-5-all-pops 606 chr1 2752692 2752693 rs10797390 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1872.000000,3136.000000, 0.373802,0.626198, maf-5-some-pop,maf-5-all-pops 606 chr1 2752718 2752719 rs74050644 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,maf-5-all-pops 606 chr1 2753226 2753227 rs34583461 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,C, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop,maf-5-all-pops 606 chr1 2753236 2753237 rs12031493 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3042.000000,1966.000000, 0.607428,0.392572, maf-5-some-pop,maf-5-all-pops 606 chr1 2753267 2753268 rs111383412 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 606 chr1 2753277 2753278 rs12033885 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 170.000000,4838.000000, 0.033946,0.966054, 606 chr1 2753326 2753327 rs115753861 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 606 chr1 2753371 2753372 rs11803074 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2697.000000,2311.000000, 0.538538,0.461462, maf-5-some-pop,maf-5-all-pops 606 chr1 2753378 2753379 rs59152303 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop,maf-5-all-pops 606 chr1 2753869 2753870 rs112784516 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4753.000000,255.000000, 0.949081,0.050919, 606 chr1 2754163 2754164 rs112018055 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop 606 chr1 2754187 2754188 rs6691019 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3556.000000,1452.000000, 0.710064,0.289936, maf-5-some-pop 606 chr1 2754511 2754512 rs6680471 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop 606 chr1 2754676 2754677 rs55940483 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop,maf-5-all-pops 606 chr1 2754770 2754771 rs117484077 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop,maf-5-all-pops 606 chr1 2754908 2754909 rs58407627 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 606 chr1 2754979 2754980 rs7541827 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2413.000000,2595.000000, 0.481829,0.518171, 606 chr1 2755010 2755011 rs139197506 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, 606 chr1 2755141 2755142 rs149941750 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, 606 chr1 2755589 2755590 rs147775105 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 606 chr1 2755772 2755773 rs10909941 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 606 chr1 2755908 2755909 rs142510313 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 606 chr1 2756287 2756288 rs4648382 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2890.000000,2118.000000, 0.577077,0.422923, maf-5-some-pop,maf-5-all-pops 606 chr1 2756396 2756397 rs4648383 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2787.000000,2221.000000, 0.556510,0.443490, maf-5-some-pop,maf-5-all-pops 606 chr1 2756620 2756621 rs4648384 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2089.000000,2919.000000, 0.417133,0.582867, maf-5-some-pop,maf-5-all-pops 606 chr1 2756765 2756766 rs77094090 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop 606 chr1 2756806 2756807 rs7516014 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2873.000000,2135.000000, 0.573682,0.426318, maf-5-some-pop,maf-5-all-pops 606 chr1 2756888 2756889 rs7548023 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2145.000000,2863.000000, 0.428315,0.571685, maf-5-some-pop,maf-5-all-pops 606 chr1 2756976 2756977 rs115757677 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 606 chr1 2757098 2757099 rs114792354 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop 606 chr1 2757102 2757103 rs113563367 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop,maf-5-all-pops 606 chr1 2757195 2757196 rs4648495 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2141.000000,2867.000000, 0.427516,0.572484, maf-5-some-pop,maf-5-all-pops 606 chr1 2757401 2757401 rs145694842 0 + - - -/GTGT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,BILGI_BIOE, 2 -,GTGT, 3145.000000,1863.000000, 0.627995,0.372005, 606 chr1 2757420 2757421 rs201920084 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,T, 304.000000,4704.000000, 0.060703,0.939297, 606 chr1 2757425 2757429 rs370979679 0 + GTGT GTGT -/GTGT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,BILGI_BIOE, 2 -,GTGT, 1530.000000,3478.000000, 0.305511,0.694489, 606 chr1 2757430 2757431 rs375299687 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 A,T, 1504.000000,3504.000000, 0.300319,0.699681, 606 chr1 2757442 2757443 rs575679145 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 513.000000,4495.000000, 0.102436,0.897564, 606 chr1 2757447 2757447 rs375082337 0 + - - -/GA genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,BILGI_BIOE, 2 -,GA, 3478.000000,1530.000000, 0.694489,0.305511, 606 chr1 2757450 2757451 rs4648498 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,T, 487.000000,4521.000000, 0.097244,0.902756, 606 chr1 2757454 2757455 rs76045791 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,GMI, 2 A,T, 3418.000000,1590.000000, 0.682508,0.317492, 606 chr1 2757478 2757479 rs78229530 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ENSEMBL, 2 A,T, 2894.000000,2114.000000, 0.577875,0.422125, 606 chr1 2757493 2757493 rs547885147 0 + - - -/GT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,GT, 4270.000000,738.000000, 0.852636,0.147364, 606 chr1 2757508 2757509 rs71503043 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ENSEMBL,GMI,HUMANGENOME_JCVI,TISHKOFF, 2 A,T, 3676.000000,1332.000000, 0.734026,0.265974, 606 chr1 2757514 2757515 rs61766530 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,HUMANGENOME_JCVI,TISHKOFF, 2 A,T, 1354.000000,3654.000000, 0.270367,0.729633, 606 chr1 2757517 2757518 rs376893934 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 138.000000,4870.000000, 0.027556,0.972444, 606 chr1 2757526 2757527 rs34464542 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,GMI,HUMANGENOME_JCVI,TISHKOFF, 2 A,T, 3308.000000,1700.000000, 0.660543,0.339457, 606 chr1 2757536 2757537 rs12739189 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,GMI,HUMANGENOME_JCVI,SSAHASNP, 2 C,T, 2922.000000,2086.000000, 0.583466,0.416534, 606 chr1 2757674 2757675 rs114996183 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 606 chr1 2757701 2757702 rs35401657 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2913.000000,2095.000000, 0.581669,0.418331, maf-5-some-pop,maf-5-all-pops 606 chr1 2757731 2757732 rs34262355 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 A,G, 1539.000000,3469.000000, 0.307308,0.692692, maf-5-some-pop,maf-5-all-pops 606 chr1 2757749 2757750 rs34202711 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 A,G, 2913.000000,2095.000000, 0.581669,0.418331, maf-5-some-pop,maf-5-all-pops 606 chr1 2758183 2758184 rs12740180 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1699.000000,3309.000000, 0.339257,0.660743, maf-5-some-pop 606 chr1 2758767 2758768 rs116309529 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 606 chr1 2759135 2759136 rs114806226 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 606 chr1 2759136 2759137 rs115756023 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 606 chr1 2759301 2759302 rs114813476 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 606 chr1 2759333 2759334 rs57412674 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 606 chr1 2759354 2759355 rs116619203 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 606 chr1 2759711 2759712 rs116405789 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 606 chr1 2759712 2759713 rs144313816 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 606 chr1 2759805 2759806 rs12037615 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP, 2 A,T, 3275.000000,1733.000000, 0.653954,0.346046, maf-5-some-pop,maf-5-all-pops 606 chr1 2759854 2759855 rs12047690 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 3538.000000,1470.000000, 0.706470,0.293530, 606 chr1 2759984 2759985 rs35042002 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 946.000000,4062.000000, 0.188898,0.811102, 606 chr1 2761374 2761375 rs12049543 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1697.000000,3311.000000, 0.338858,0.661142, maf-5-some-pop,maf-5-all-pops 606 chr1 2761894 2761895 rs72851261 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,T, 4947.000000,61.000000, 0.987819,0.012180, 606 chr1 2762909 2762910 rs61763660 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 525.000000,4483.000000, 0.104832,0.895168, maf-5-some-pop 606 chr1 2763268 2763269 rs6424080 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3123.000000,1885.000000, 0.623602,0.376398, maf-5-some-pop,maf-5-all-pops 606 chr1 2763380 2763381 rs6424081 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3174.000000,1834.000000, 0.633786,0.366214, maf-5-some-pop,maf-5-all-pops 606 chr1 2764067 2764068 rs10909950 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1546.000000,3462.000000, 0.308706,0.691294, maf-5-some-pop,maf-5-all-pops 606 chr1 2764142 2764150 rs111345351 0 + TTGTCTGC TTGTCTGC -/TTGTCTGC genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER, 2 -,TTGTCTGC, 1981.000000,3027.000000, 0.395567,0.604433, 606 chr1 2764171 2764172 rs7553697 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop 606 chr1 2764322 2764323 rs6424082 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1483.000000,3525.000000, 0.296126,0.703874, maf-5-some-pop,maf-5-all-pops 606 chr1 2764437 2764438 rs6424083 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop 606 chr1 2764760 2764761 rs115374664 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 606 chr1 2764778 2764779 rs114009918 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 606 chr1 2764998 2764999 rs12083883 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 266.000000,4742.000000, 0.053115,0.946885, 606 chr1 2765088 2765089 rs34133714 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3671.000000,1337.000000, 0.733027,0.266973, maf-5-some-pop,maf-5-all-pops 606 chr1 2765170 2765171 rs34352177 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1336.000000,3672.000000, 0.266773,0.733227, maf-5-some-pop,maf-5-all-pops 606 chr1 2765294 2765294 rs537679240 0 + - - -/TTAT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TTAT, 1931.000000,3077.000000, 0.385583,0.614417, 606 chr1 2765870 2765871 rs146782789 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,BL,SSMP, 2 -,C, 956.000000,4052.000000, 0.190895,0.809105, 606 chr1 2765872 2765873 rs10909953 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,ENSEMBL,GMI,PJP,SC_SNP,SSAHASNP, 2 A,C, 1723.000000,3285.000000, 0.344050,0.655950, 606 chr1 2766063 2766064 rs76062413 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,GMI,MPI_MOLGEN,SSMP, 2 C,T, 2602.000000,2406.000000, 0.519569,0.480431, 606 chr1 2766227 2766228 rs6676347 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP, 2 A,G, 3668.000000,1340.000000, 0.732428,0.267572, 606 chr1 2766290 2766291 rs4648513 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4803.000000,205.000000, 0.959065,0.040935, 606 chr1 2766313 2766314 rs59048447 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1337.000000,3671.000000, 0.266973,0.733027, maf-5-some-pop,maf-5-all-pops 606 chr1 2766970 2766971 rs4648515 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop 606 chr1 2767200 2767201 rs4648518 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop 606 chr1 2767308 2767309 rs112085560 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 606 chr1 2767380 2767381 rs115388587 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, 606 chr1 2767490 2767494 rs202049096 0 + GTTA GTTA -/GTTA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GTTA, 87.000000,4921.000000, 0.017372,0.982628, 606 chr1 2767702 2767703 rs4648519 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop 606 chr1 2768621 2768622 rs147670674 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 3252.000000,1756.000000, 0.649361,0.350639, 606 chr1 2768645 2768646 rs12135429 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3150.000000,1858.000000, 0.628994,0.371006, 606 chr1 2768648 2768649 rs12137148 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SC_SNP,SSMP, 2 A,G, 1968.000000,3040.000000, 0.392971,0.607029, 606 chr1 2768656 2768657 rs12135432 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3058.000000,1950.000000, 0.610623,0.389377, 606 chr1 2768747 2768748 rs535208978 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4900.000000,108.000000, 0.978435,0.021566, 606 chr1 2768752 2768753 rs10752736 0 + A A A/G genomic single by-cluster,by-frequency 0.46875 0.121031 unknown exact 1 5 ABI,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 A,G, 4.000000,6.000000, 0.400000,0.600000, 606 chr1 2768799 2768800 rs543459954 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4919.000000,89.000000, 0.982228,0.017772, 606 chr1 2768809 2768810 rs71632391 0 + A A A/T genomic single by-cluster,by-frequency 0.5 0 unknown exact 1 4 COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 A,T, 5.000000,5.000000, 0.500000,0.500000, 606 chr1 2768890 2768891 rs61763682 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 G,T, 3176.000000,1832.000000, 0.634185,0.365815, 606 chr1 2768916 2768917 rs373542657 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 152.000000,4856.000000, 0.030351,0.969649, 606 chr1 2768958 2768959 rs61763683 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, 606 chr1 2769000 2769001 rs61763684 0 + T T C/T genomic single by-cluster,by-frequency 0.48 0.09798 unknown exact 1 5 BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 C,T, 6.000000,4.000000, 0.600000,0.400000, 606 chr1 2769046 2769047 rs71632389 0 + G G G/T genomic single by-cluster,by-frequency 0.46875 0.121031 unknown exact 1 3 COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI, 2 G,T, 4.000000,6.000000, 0.400000,0.600000, 606 chr1 2769072 2769073 rs71503046 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 C,T, 3511.000000,1497.000000, 0.701078,0.298922, 606 chr1 2769150 2769151 rs77686341 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,SSAHASNP, 2 G,T, 1299.000000,3709.000000, 0.259385,0.740615, 606 chr1 2769168 2769169 rs71632392 0 + G G A/G genomic single by-cluster,by-frequency 0.5 0 unknown exact 1 4 COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 A,G, 6.000000,6.000000, 0.500000,0.500000, 606 chr1 2769281 2769282 rs71632397 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 G,T, 5.000000,5.000000, 0.500000,0.500000, 606 chr1 2769306 2769307 rs71503047 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 G,T, 3742.000000,1266.000000, 0.747204,0.252796, 606 chr1 2769324 2769325 rs71503048 0 + A A A/G genomic single by-cluster,by-frequency 0.244898 0.249948 unknown exact 1 4 COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 A,G, 2.000000,12.000000, 0.142857,0.857143, 606 chr1 2769376 2769377 rs10909961 0 + G G A/G genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.486111 0.082168 unknown exact 1 8 BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HUMANGENOME_JCVI,SC_SNP,SSAHASNP,SSMP, 2 A,G, 5.000000,7.000000, 0.416667,0.583333, 606 chr1 2769541 2769542 rs10752737 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop 606 chr1 2769745 2769746 rs114458251 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 606 chr1 2769932 2769933 rs6665646 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3640.000000,1368.000000, 0.726837,0.273163, maf-5-some-pop 606 chr1 2770181 2770182 rs6679343 0 + A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,T, 338.000000,4670.000000, 0.067492,0.932508, maf-5-some-pop 606 chr1 2770694 2770695 rs147515000 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 606 chr1 2770896 2770897 rs116172154 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 606 chr1 2771325 2771326 rs67868939 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 C,G, 3639.000000,1369.000000, 0.726637,0.273363, maf-5-some-pop 606 chr1 2771503 2771504 rs12743952 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1371.000000,3637.000000, 0.273762,0.726238, maf-5-some-pop 606 chr1 2771514 2771515 rs12743965 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1369.000000,3639.000000, 0.273363,0.726637, maf-5-some-pop 606 chr1 2771614 2771615 rs151242004 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 606 chr1 2771622 2771623 rs34161193 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1371.000000,3637.000000, 0.273762,0.726238, maf-5-some-pop 606 chr1 2771655 2771656 rs35134901 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 1372.000000,3636.000000, 0.273962,0.726038, maf-5-some-pop,maf-5-all-pops 606 chr1 2771677 2771678 rs35767265 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1346.000000,3662.000000, 0.268770,0.731230, maf-5-some-pop,maf-5-all-pops 606 chr1 2772046 2772047 rs35313744 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,C, 3639.000000,1369.000000, 0.726637,0.273363, maf-5-some-pop,maf-5-all-pops 606 chr1 2772193 2772194 rs6694484 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1341.000000,3667.000000, 0.267772,0.732228, maf-5-some-pop 606 chr1 2772346 2772347 rs6675221 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1040.000000,3968.000000, 0.207668,0.792332, maf-5-some-pop 606 chr1 2772797 2772798 rs12727394 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1379.000000,3629.000000, 0.275359,0.724641, maf-5-some-pop 606 chr1 2772917 2772918 rs112423661 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 606 chr1 2773254 2773255 rs12729596 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3632.000000,1376.000000, 0.725240,0.274760, maf-5-some-pop,maf-5-all-pops 606 chr1 2773488 2773489 rs6660680 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 1771.000000,3237.000000, 0.353634,0.646366, maf-5-some-pop,maf-5-all-pops 606 chr1 2773565 2773566 rs6660759 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1840.000000,3168.000000, 0.367412,0.632588, maf-5-some-pop,maf-5-all-pops 606 chr1 2773673 2773674 rs57141720 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 606 chr1 2774052 2774053 rs7529000 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3391.000000,1617.000000, 0.677117,0.322883, maf-5-some-pop,maf-5-all-pops 606 chr1 2774197 2774198 rs72851267 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 606 chr1 2774332 2774333 rs113831951 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 606 chr1 2774345 2774346 rs112340477 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 606 chr1 2774380 2774381 rs12567869 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,G, 907.000000,4101.000000, 0.181110,0.818890, maf-5-some-pop,maf-5-all-pops 606 chr1 2774733 2774734 rs116492456 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 606 chr1 2774984 2774985 rs56995347 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 606 chr1 2775016 2775017 rs111447535 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 606 chr1 2775530 2775531 rs116419806 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4912.000000,96.000000, 0.980831,0.019169, 606 chr1 2775715 2775716 rs72629408 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4644.000000,364.000000, 0.927316,0.072684, maf-5-some-pop 606 chr1 2775812 2775813 rs113712601 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4839.000000,169.000000, 0.966254,0.033746, 606 chr1 2775851 2775851 rs140196226 0 + - - -/AGGAAGG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,AGGAAGG, 538.000000,4470.000000, 0.107428,0.892572, 606 chr1 2775946 2775947 rs371373141 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4726.000000,282.000000, 0.943690,0.056310, 606 chr1 2776261 2776262 rs148837278 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 606 chr1 2776318 2776319 rs112872165 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 606 chr1 2776760 2776761 rs897617 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 2112.000000,2896.000000, 0.421725,0.578275, maf-5-some-pop,maf-5-all-pops 606 chr1 2776773 2776774 rs897618 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 2085.000000,2923.000000, 0.416334,0.583666, maf-5-some-pop 606 chr1 2776776 2776777 rs897619 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2928.000000,2080.000000, 0.584665,0.415335, maf-5-some-pop,maf-5-all-pops 606 chr1 2776794 2776795 rs897621 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,ILLUMINA,TSC-CSHL, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 606 chr1 2777041 2777042 rs34376289 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3654.000000,1354.000000, 0.729633,0.270367, maf-5-some-pop 606 chr1 2777309 2777310 rs115984860 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 60.000000,4948.000000, 0.011981,0.988019, 606 chr1 2777957 2777958 rs61763689 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop,maf-5-all-pops 606 chr1 2778058 2778059 rs114800103 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, 606 chr1 2778489 2778490 rs72851277 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop,maf-5-all-pops 606 chr1 2778566 2778567 rs12757327 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3751.000000,1257.000000, 0.749002,0.250998, maf-5-some-pop,maf-5-all-pops 606 chr1 2778765 2778766 rs10909992 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1913.000000,3095.000000, 0.381989,0.618011, maf-5-some-pop,maf-5-all-pops 606 chr1 2778891 2778892 rs12409918 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1378.000000,3630.000000, 0.275160,0.724840, maf-5-some-pop 606 chr1 2779042 2779043 rs12409348 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3624.000000,1384.000000, 0.723642,0.276358, maf-5-some-pop 606 chr1 2779396 2779397 rs78057964 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4707.000000,301.000000, 0.939896,0.060104, maf-5-some-pop,maf-5-all-pops 606 chr1 2779480 2779481 rs74047608 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 606 chr1 2779623 2779624 rs114012564 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,maf-5-all-pops 606 chr1 2779759 2779760 rs28600853 0 + C C C/T genomic single by-cluster,by-frequency,by-1000genomes 0.244898 0.249948 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP, 2 C,T, 2.000000,12.000000, 0.142857,0.857143, 606 chr1 2779891 2779892 rs7542593 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 2814.000000,2194.000000, 0.561901,0.438099, maf-5-some-pop,maf-5-all-pops 606 chr1 2779922 2779923 rs116674800 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4936.000000,72.000000, 0.985623,0.014377, 606 chr1 2780156 2780157 rs115427698 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop,maf-5-all-pops 606 chr1 2780262 2780263 rs114278253 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 G,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 606 chr1 2780901 2780902 rs11803171 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 606 chr1 2781007 2781008 rs116372928 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 4929.000000,79.000000, 0.984225,0.015775, 606 chr1 2781542 2781543 rs74613112 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 606 chr1 2782113 2782114 rs80073087 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 606 chr1 2782209 2782210 rs115381890 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 G,T, 4853.000000,155.000000, 0.969050,0.030950, 606 chr1 2782267 2782268 rs74608812 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 606 chr1 2782592 2782593 rs12119163 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1648.000000,3360.000000, 0.329073,0.670927, maf-5-some-pop,maf-5-all-pops 606 chr1 2782742 2782743 rs7551868 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop 606 chr1 2783063 2783064 rs4648403 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3198.000000,1810.000000, 0.638578,0.361422, maf-5-some-pop,maf-5-all-pops 606 chr1 2783308 2783309 rs10737194 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 2588.000000,2420.000000, 0.516773,0.483227, maf-5-some-pop,maf-5-all-pops 606 chr1 2783430 2783431 rs12043725 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 G,T, 2588.000000,2420.000000, 0.516773,0.483227, maf-5-some-pop,maf-5-all-pops 606 chr1 2783649 2783650 rs7543609 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2421.000000,2587.000000, 0.483427,0.516573, maf-5-some-pop,maf-5-all-pops 606 chr1 2783814 2783815 rs12752112 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1655.000000,3353.000000, 0.330471,0.669529, maf-5-some-pop,maf-5-all-pops 606 chr1 2784091 2784092 rs897636 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2421.000000,2587.000000, 0.483427,0.516573, maf-5-some-pop,maf-5-all-pops 606 chr1 2784615 2784616 rs7546616 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2411.000000,2597.000000, 0.481430,0.518570, maf-5-some-pop,maf-5-all-pops 606 chr1 2784669 2784670 rs74047609 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 606 chr1 2784809 2784810 rs1563465 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 4467.000000,541.000000, 0.891973,0.108027, maf-5-some-pop 606 chr1 2785381 2785382 rs4648548 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2440.000000,2568.000000, 0.487220,0.512780, maf-5-some-pop,maf-5-all-pops 606 chr1 2785516 2785517 rs4648549 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2568.000000,2440.000000, 0.512780,0.487220, maf-5-some-pop,maf-5-all-pops 606 chr1 2785670 2785671 rs6683974 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4519.000000,489.000000, 0.902356,0.097644, maf-5-some-pop 606 chr1 2786144 2786145 rs1563469 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2564.000000,2444.000000, 0.511981,0.488019, maf-5-some-pop,maf-5-all-pops 606 chr1 2786398 2786399 rs76315689 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 606 chr1 2786461 2786462 rs114515656 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop,maf-5-all-pops 606 chr1 2786625 2786626 rs61763690 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 606 chr1 2786669 2786670 rs79619776 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 606 chr1 2786693 2786694 rs1563470 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2408.000000,2600.000000, 0.480831,0.519169, maf-5-some-pop,maf-5-all-pops 606 chr1 2787152 2787153 rs897616 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop 606 chr1 2787549 2787550 rs7556190 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop 606 chr1 2787895 2787896 rs80184692 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 606 chr1 2788426 2788427 rs72852304 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 606 chr1 2788660 2788661 rs115921278 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop 606 chr1 2788707 2788708 rs78414001 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4531.000000,477.000000, 0.904752,0.095248, maf-5-some-pop 606 chr1 2788712 2788713 rs56273341 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3399.000000,1609.000000, 0.678714,0.321286, maf-5-some-pop,maf-5-all-pops 606 chr1 2788715 2788716 rs115081715 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 65.000000,4943.000000, 0.012979,0.987021, 606 chr1 2789107 2789108 rs10910019 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3076.000000,1932.000000, 0.614217,0.385783, maf-5-some-pop,maf-5-all-pops 606 chr1 2789269 2789270 rs6670414 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 A,G, 2578.000000,2430.000000, 0.514776,0.485224, maf-5-some-pop,maf-5-all-pops 606 chr1 2789488 2789489 rs559516452 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4786.000000,222.000000, 0.955671,0.044329, 606 chr1 2789496 2789497 rs55740077 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 1420.000000,3588.000000, 0.283546,0.716454, 606 chr1 2789500 2789501 rs55927204 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 1420.000000,3588.000000, 0.283546,0.716454, 606 chr1 2789905 2789906 rs2124661 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 606 chr1 2790092 2790093 rs6698010 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2516.000000,2492.000000, 0.502396,0.497604, maf-5-some-pop,maf-5-all-pops 606 chr1 2790372 2790373 rs6665603 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,SSMP,TISHKOFF, 2 A,C, 4530.000000,478.000000, 0.904553,0.095447, maf-5-some-pop 606 chr1 2791142 2791143 rs10910023 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3134.000000,1874.000000, 0.625799,0.374201, maf-5-some-pop 606 chr1 2791188 2791189 rs80086267 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 606 chr1 2791318 2791319 rs74836692 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, 606 chr1 2791461 2791462 rs117275259 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, 606 chr1 2791876 2791877 rs115639599 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 606 chr1 2791952 2791953 rs12131393 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3480.000000,1528.000000, 0.694888,0.305112, maf-5-some-pop,maf-5-all-pops 606 chr1 2792114 2792115 rs12131450 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3506.000000,1502.000000, 0.700080,0.299920, maf-5-some-pop,maf-5-all-pops 606 chr1 2792296 2792297 rs114810252 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 606 chr1 2792311 2792312 rs74602615 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,maf-5-all-pops 606 chr1 2792471 2792472 rs116339523 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 606 chr1 2792740 2792741 rs12068127 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,SC_SNP, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 606 chr1 2792941 2792942 rs112721196 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 606 chr1 2793041 2793042 rs76183623 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 4865.000000,143.000000, 0.971446,0.028554, maf-5-some-pop,maf-5-all-pops 606 chr1 2793158 2793159 rs115225759 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 606 chr1 2793231 2793232 rs12063033 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 A,G, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop 606 chr1 2793508 2793509 rs143833123 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 81.000000,4927.000000, 0.016174,0.983826, 606 chr1 2793753 2793754 rs113572417 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop,maf-5-all-pops 606 chr1 2794116 2794117 rs76994798 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop,maf-5-all-pops 606 chr1 2794163 2794164 rs115985852 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 606 chr1 2794249 2794250 rs6673012 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4236.000000,772.000000, 0.845847,0.154153, maf-5-some-pop,maf-5-all-pops 606 chr1 2794252 2794253 rs6658584 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2273.000000,2735.000000, 0.453874,0.546126, maf-5-some-pop,maf-5-all-pops 606 chr1 2794301 2794302 rs116094386 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 606 chr1 2794469 2794470 rs6676289 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,T, 535.000000,4473.000000, 0.106829,0.893171, maf-5-some-pop,maf-5-all-pops 606 chr1 2794536 2794537 rs6668620 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2590.000000,2418.000000, 0.517173,0.482827, maf-5-some-pop,maf-5-all-pops 606 chr1 2794957 2794958 rs16823110 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,PERLEGEN,SSMP, 2 C,T, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop,maf-5-all-pops 606 chr1 2795081 2795082 rs72852320 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 606 chr1 2795536 2795537 rs6679954 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2695.000000,2313.000000, 0.538139,0.461861, maf-5-some-pop,maf-5-all-pops 606 chr1 2796000 2796001 rs10797340 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4729.000000,279.000000, 0.944289,0.055711, maf-5-some-pop 606 chr1 2796554 2796555 rs10752722 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 606 chr1 2796618 2796619 rs4648406 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4710.000000,298.000000, 0.940495,0.059505, maf-5-some-pop 606 chr1 2796662 2796663 rs4648408 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,WI_SSAHASNP, 2 C,G, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop 606 chr1 2797265 2797266 rs6424057 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop 606 chr1 2797855 2797856 rs10797342 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2476.000000,2532.000000, 0.494409,0.505591, maf-5-some-pop 606 chr1 2798204 2798205 rs2124662 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2499.000000,2509.000000, 0.499002,0.500998, maf-5-some-pop,maf-5-all-pops 606 chr1 2798334 2798335 rs1563473 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2540.000000,2468.000000, 0.507188,0.492812, maf-5-some-pop,maf-5-all-pops 606 chr1 2798438 2798439 rs16823119 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 G,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 606 chr1 2798456 2798457 rs1563474 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,TISHKOFF,TSC-CSHL, 2 A,G, 2418.000000,2590.000000, 0.482827,0.517173, maf-5-some-pop,maf-5-all-pops 606 chr1 2798482 2798483 rs61181410 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 606 chr1 2798603 2798604 rs116736779 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,maf-5-all-pops 606 chr1 2798711 2798712 rs4373707 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2690.000000,2318.000000, 0.537141,0.462859, maf-5-some-pop,maf-5-all-pops 606 chr1 2798879 2798880 rs16823129 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,PERLEGEN,SSMP, 2 G,T, 4865.000000,143.000000, 0.971446,0.028554, maf-5-some-pop,maf-5-all-pops 606 chr1 2799046 2799047 rs2377038 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2461.000000,2547.000000, 0.491414,0.508586, maf-5-some-pop,maf-5-all-pops 606 chr1 2799089 2799090 rs74047624 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 4879.000000,129.000000, 0.974241,0.025759, 606 chr1 2799178 2799179 rs729965 0 + G G C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4283.000000,725.000000, 0.855232,0.144768, maf-5-some-pop 606 chr1 2799479 2799480 rs11580768 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3493.000000,1515.000000, 0.697484,0.302516, maf-5-some-pop,maf-5-all-pops 606 chr1 2799989 2799989 rs146519664 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,G, 4538.000000,470.000000, 0.906150,0.093850, 606 chr1 2800085 2800086 rs142288595 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 606 chr1 2800105 2800106 rs148272384 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 606 chr1 2800108 2800109 rs114517796 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 606 chr1 2800117 2800118 rs4233022 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4707.000000,301.000000, 0.939896,0.060104, maf-5-some-pop 606 chr1 2800353 2800354 rs61763695 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 2550.000000,2458.000000, 0.509185,0.490815, maf-5-some-pop,maf-5-all-pops 606 chr1 2800572 2800573 rs79327914 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 606 chr1 2800735 2800736 rs114615498 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 606 chr1 2800753 2800754 rs2061229 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop 606 chr1 2801395 2801396 rs4255325 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,SC_JCM,TISHKOFF, 2 C,T, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,maf-5-all-pops 606 chr1 2801458 2801459 rs2045333 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL, 2 C,T, 4672.000000,336.000000, 0.932907,0.067093, maf-5-some-pop 606 chr1 2801757 2801758 rs78892159 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop,maf-5-all-pops 606 chr1 2801766 2801767 rs60780366 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 606 chr1 2801827 2801828 rs4648429 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 651.000000,4357.000000, 0.129992,0.870008, maf-5-some-pop 606 chr1 2801975 2801976 rs78592587 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop,maf-5-all-pops 606 chr1 2801984 2801985 rs80273827 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop,maf-5-all-pops 606 chr1 2802034 2802035 rs10737188 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 606 chr1 2802051 2802052 rs12127835 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3493.000000,1515.000000, 0.697484,0.302516, maf-5-some-pop,maf-5-all-pops 606 chr1 2802056 2802057 rs12124890 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1533.000000,3475.000000, 0.306110,0.693890, maf-5-some-pop,maf-5-all-pops 606 chr1 2802232 2802233 rs113999972 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 606 chr1 2802277 2802278 rs72852339 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 606 chr1 2802347 2802348 rs7552943 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3484.000000,1524.000000, 0.695687,0.304313, maf-5-some-pop,maf-5-all-pops 606 chr1 2802561 2802562 rs72629424 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 606 chr1 2803179 2803180 rs72852346 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 606 chr1 2803258 2803259 rs72852348 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop,maf-5-all-pops 606 chr1 2803363 2803363 rs201496379 0 + - - -/GCCTCCCAGTGCCCTG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,GCCTCCCAGTGCCCTG, 4868.000000,140.000000, 0.972045,0.027955, 606 chr1 2803388 2803389 rs72852350 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, 606 chr1 2803546 2803547 rs3001793 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4629.000000,379.000000, 0.924321,0.075679, maf-5-some-pop 606 chr1 2803799 2803800 rs568034584 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 606 chr1 2804277 2804278 rs3001794 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2029.000000,2979.000000, 0.405152,0.594848, maf-5-some-pop,maf-5-all-pops 606 chr1 2804328 2804329 rs556502287 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4892.000000,116.000000, 0.976837,0.023163, 606 chr1 2804331 2804332 rs116207797 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 606 chr1 2804340 2804341 rs116102682 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 G,T, 4927.000000,81.000000, 0.983826,0.016174, 606 chr1 2804399 2804400 rs72852353 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop,maf-5-all-pops 606 chr1 2804472 2804473 rs11581885 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 507.000000,4501.000000, 0.101238,0.898762, 606 chr1 2804478 2804479 rs34131736 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BL,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,T, 506.000000,4502.000000, 0.101038,0.898962, 606 chr1 2804665 2804666 rs116369120 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop,maf-5-all-pops 606 chr1 2804809 2804810 rs12122321 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 561.000000,4447.000000, 0.112021,0.887979, maf-5-some-pop 606 chr1 2804902 2804903 rs112714565 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop,maf-5-all-pops 606 chr1 2805007 2805008 rs4648430 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4790.000000,218.000000, 0.956470,0.043530, 606 chr1 2805027 2805028 rs2925494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,EVA-GONL,SC_JCM,TISHKOFF, 2 C,T, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop,maf-5-all-pops 606 chr1 2805192 2805193 rs144345975 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 80.000000,4928.000000, 0.015974,0.984026, 606 chr1 2805507 2805508 rs113908250 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 606 chr1 2805515 2805516 rs12066931 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 606 chr1 2805895 2805896 rs10909827 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3920.000000,1088.000000, 0.782748,0.217252, maf-5-some-pop,maf-5-all-pops 606 chr1 2806087 2806088 rs74527968 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 G,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 606 chr1 2806106 2806107 rs3100865 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3114.000000,1894.000000, 0.621805,0.378195, maf-5-some-pop 606 chr1 2806173 2806174 rs115301384 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, 606 chr1 2806200 2806201 rs74047630 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 4582.000000,426.000000, 0.914936,0.085064, maf-5-some-pop,maf-5-all-pops 606 chr1 2806286 2806287 rs113777419 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SSMP, 2 C,G, 523.000000,4485.000000, 0.104433,0.895567, maf-5-some-pop,maf-5-all-pops 606 chr1 2806389 2806390 rs112163476 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SSMP, 2 A,G, 4487.000000,521.000000, 0.895966,0.104034, maf-5-some-pop,maf-5-all-pops 606 chr1 2806511 2806512 rs528392261 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 606 chr1 2806512 2806513 rs551347740 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4940.000000,68.000000, 0.986422,0.013578, 606 chr1 2806518 2806519 rs571202227 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 606 chr1 2806520 2806521 rs536893163 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 606 chr1 2806754 2806755 rs10909831 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2604.000000,2404.000000, 0.519968,0.480032, maf-5-some-pop,maf-5-all-pops 606 chr1 2806779 2806780 rs72852358 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 606 chr1 2806817 2806818 rs72852360 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 606 chr1 2806889 2806890 rs1456464 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ILLUMINA-UK,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop,maf-5-all-pops 606 chr1 2806915 2806916 rs111390332 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 606 chr1 2806926 2806927 rs112925137 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 606 chr1 2807067 2807068 rs111784773 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,maf-5-all-pops 606 chr1 2807075 2807076 rs72852361 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 606 chr1 2807092 2807093 rs113853856 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,T, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 606 chr1 2807137 2807138 rs56982697 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4799.000000,209.000000, 0.958267,0.041733, maf-5-some-pop,maf-5-all-pops 606 chr1 2807155 2807156 rs12075945 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,SC_SNP, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 606 chr1 2807340 2807341 rs72852362 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 606 chr1 2807560 2807561 rs80010028 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 606 chr1 2807563 2807564 rs111781460 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 606 chr1 2807571 2807572 rs112113311 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 606 chr1 2807601 2807602 rs72852364 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 606 chr1 2807905 2807906 rs111564293 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 606 chr1 2808005 2808006 rs72852366 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 606 chr1 2808142 2808143 rs72852368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 606 chr1 2808214 2808215 rs1869968 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,ILLUMINA-UK,SC_JCM,TSC-CSHL, 2 C,T, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop,maf-5-all-pops 606 chr1 2808279 2808280 rs72852369 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 606 chr1 2808370 2808371 rs58382301 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 606 chr1 2808385 2808386 rs72852370 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 606 chr1 2808478 2808479 rs59494153 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 606 chr1 2808524 2808525 rs559619251 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 83.000000,4925.000000, 0.016573,0.983427, 606 chr1 2808547 2808548 rs61763696 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4152.000000,856.000000, 0.829073,0.170927, maf-5-some-pop,maf-5-all-pops 606 chr1 2808552 2808553 rs10909832 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2081.000000,2927.000000, 0.415535,0.584465, maf-5-some-pop,maf-5-all-pops 606 chr1 2808571 2808572 rs116841326 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 606 chr1 2808604 2808605 rs58962929 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 606 chr1 2808732 2808733 rs60384145 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 606 chr1 2808748 2808749 rs10797358 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2053.000000,2955.000000, 0.409944,0.590056, maf-5-some-pop,maf-5-all-pops 606 chr1 2808812 2808813 rs10909833 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,SC_SNP, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 606 chr1 2808894 2808895 rs59038236 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 606 chr1 2809112 2809113 rs72852374 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 606 chr1 2809338 2809339 rs72852376 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 606 chr1 2809441 2809442 rs72852378 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 606 chr1 2809521 2809521 rs201299275 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4926.000000,82.000000, 0.983626,0.016374, 606 chr1 2809526 2809527 rs116191793 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop,maf-5-all-pops 606 chr1 2810035 2810036 rs72852381 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop,maf-5-all-pops 606 chr1 2810113 2810114 rs57811604 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, maf-5-some-pop,maf-5-all-pops 606 chr1 2810203 2810204 rs72852382 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop,maf-5-all-pops 606 chr1 2810256 2810257 rs72852383 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4926.000000,82.000000, 0.983626,0.016374, 606 chr1 2810464 2810465 rs112949871 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 606 chr1 2810472 2810473 rs56813856 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4477.000000,531.000000, 0.893970,0.106030, maf-5-some-pop,maf-5-all-pops 606 chr1 2810494 2810495 rs59499023 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 311.000000,4697.000000, 0.062101,0.937899, maf-5-some-pop,maf-5-all-pops 606 chr1 2810517 2810518 rs72852386 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,T, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 606 chr1 2810663 2810664 rs72852388 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 606 chr1 2810673 2810674 rs72852389 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 606 chr1 2810717 2810718 rs112268839 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 606 chr1 2810790 2810791 rs61763697 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 606 chr1 2810957 2810957 rs59066687 0 + - - -/CCAG genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,CCAG, 4928.000000,80.000000, 0.984026,0.015974, 606 chr1 2811027 2811028 rs57847345 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 4852.000000,156.000000, 0.968850,0.031150, maf-5-some-pop,maf-5-all-pops 606 chr1 2811263 2811277 rs149391990 0 + CCTCCCCACCCTGA CCTCCCCACCCTGA -/CCTCCCCACCCTGA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,GMI,LUNTER, 2 -,CCTCCCCACCCTGA, 847.000000,4161.000000, 0.169129,0.830871, 606 chr1 2811277 2811290 rs565706339 0 + CCTCCCCACCCTG CCTCCCCACCCTG -/CCTCCCCACCCTG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CCTCCCCACCCTG, 65.000000,4943.000000, 0.012979,0.987021, 606 chr1 2811322 2811323 rs72852390 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 606 chr1 2811346 2811347 rs72852392 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4895.000000,113.000000, 0.977436,0.022564, 606 chr1 2811401 2811402 rs115267687 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,C, 4953.000000,55.000000, 0.989018,0.010982, 606 chr1 2811426 2811427 rs138446575 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 606 chr1 2811659 2811660 rs71632399 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 606 chr1 2811693 2811694 rs72852395 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 606 chr1 2811887 2811888 rs72852396 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 606 chr1 2811987 2811988 rs1456466 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1292.000000,3716.000000, 0.257987,0.742013, maf-5-some-pop,maf-5-all-pops 606 chr1 2812243 2812244 rs10909834 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1252.000000,3756.000000, 0.250000,0.750000, maf-5-some-pop,maf-5-all-pops 606 chr1 2812251 2812252 rs116320789 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 606 chr1 2812354 2812355 rs113247373 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop,maf-5-all-pops 606 chr1 2812645 2812646 rs1456467 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3664.000000,1344.000000, 0.731629,0.268371, maf-5-some-pop,maf-5-all-pops 606 chr1 2813151 2813153 rs199794941 0 + CG CG -/CG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CG, 214.000000,4794.000000, 0.042732,0.957268, 606 chr1 2813232 2813233 rs186754899 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 76.000000,4932.000000, 0.015176,0.984824, 606 chr1 2813467 2813468 rs111067901 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, 606 chr1 2813473 2813474 rs10909835 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,C, 2093.000000,2915.000000, 0.417931,0.582069, 606 chr1 2813565 2813566 rs181425333 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 98.000000,4910.000000, 0.019569,0.980431, 606 chr1 2813620 2813621 rs111203479 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF,WARNICH_LAB, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 606 chr1 2813741 2813742 rs111894054 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, 606 chr1 2813794 2813795 rs56116443 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop,maf-5-all-pops 606 chr1 2813827 2813828 rs61246860 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 606 chr1 2813916 2813917 rs60523099 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4933.000000,75.000000, 0.985024,0.014976, 606 chr1 2814280 2814281 rs111763325 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 606 chr1 2814788 2814789 rs76712529 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 606 chr1 2815169 2815170 rs12072592 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 606 chr1 2815608 2815612 rs142276236 0 + AAAC AAAC -/AAAC genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,GMI,LUNTER,PJP,SSMP, 2 -,AAAC, 4870.000000,138.000000, 0.972444,0.027556, 606 chr1 2815923 2815924 rs112496052 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 606 chr1 2815926 2815927 rs112068997 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 59.000000,4949.000000, 0.011781,0.988219, 606 chr1 2816060 2816061 rs113903333 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 606 chr1 2816299 2816300 rs61128562 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,HGSV,TISHKOFF, 2 A,G, 239.000000,4769.000000, 0.047724,0.952276, maf-5-some-pop,maf-5-all-pops 606 chr1 2816376 2816377 rs115953067 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 606 chr1 2816501 2816502 rs60056301 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 606 chr1 2816581 2816581 rs34966309 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 2895.000000,2113.000000, 0.578075,0.421925, 606 chr1 2816717 2816718 rs114126725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 606 chr1 2816829 2816830 rs72852400 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 4933.000000,75.000000, 0.985024,0.014976, 606 chr1 2817257 2817258 rs74047637 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4852.000000,156.000000, 0.968850,0.031150, maf-5-some-pop,maf-5-all-pops 606 chr1 2817420 2817421 rs2842910 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1663.000000,3345.000000, 0.332069,0.667931, maf-5-some-pop,maf-5-all-pops 606 chr1 2817593 2817594 rs2168532 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3869.000000,1139.000000, 0.772564,0.227436, maf-5-some-pop,maf-5-all-pops 606 chr1 2817816 2817817 rs60245650 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 4933.000000,75.000000, 0.985024,0.014976, 606 chr1 2817958 2817959 rs192578491 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 53.000000,4955.000000, 0.010583,0.989417, 606 chr1 2818111 2818112 rs11806642 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4792.000000,216.000000, 0.956869,0.043131, maf-5-some-pop,maf-5-all-pops 606 chr1 2818216 2818217 rs11807311 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,TISHKOFF, 2 A,C, 4615.000000,393.000000, 0.921526,0.078474, 606 chr1 2818318 2818319 rs72853303 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 606 chr1 2818480 2818481 rs72853305 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 606 chr1 2818547 2818548 rs74047641 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 C,T, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop,maf-5-all-pops 606 chr1 2818588 2818589 rs115946244 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 606 chr1 2818886 2818887 rs2842912 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF, 2 G,T, 4851.000000,157.000000, 0.968650,0.031350, 606 chr1 2818909 2818910 rs116768026 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 606 chr1 2818932 2818933 rs116043350 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 4905.000000,103.000000, 0.979433,0.020567, 606 chr1 2818980 2818981 rs112456242 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, 606 chr1 2819008 2819009 rs185054675 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4938.000000,70.000000, 0.986022,0.013978, 606 chr1 2819011 2819012 rs368801654 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4937.000000,71.000000, 0.985823,0.014177, 606 chr1 2819018 2819019 rs57481160 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,maf-5-all-pops 606 chr1 2819109 2819110 rs58004494 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 G,T, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop,maf-5-all-pops 606 chr1 2819275 2819276 rs117684702 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 606 chr1 2819306 2819307 rs79316815 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 4082.000000,926.000000, 0.815096,0.184904, 606 chr1 2819418 2819419 rs545189117 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4749.000000,259.000000, 0.948283,0.051717, 606 chr1 2819474 2819475 rs148800943 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 122.000000,4886.000000, 0.024361,0.975639, 606 chr1 2819480 2819481 rs142434395 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4887.000000,121.000000, 0.975839,0.024161, 606 chr1 2819558 2819559 rs2842913 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1570.000000,3438.000000, 0.313498,0.686502, maf-5-some-pop,maf-5-all-pops 606 chr1 2819648 2819649 rs79260575 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 606 chr1 2819904 2819905 rs115083787 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 606 chr1 2820528 2820529 rs76920333 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,C, 956.000000,4052.000000, 0.190895,0.809105, 606 chr1 2820597 2820598 rs112649304 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 4954.000000,54.000000, 0.989217,0.010783, 606 chr1 2820860 2820861 rs17384388 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop 606 chr1 2820971 2820972 rs2842914 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1435.000000,3573.000000, 0.286542,0.713458, maf-5-some-pop,maf-5-all-pops 606 chr1 2821049 2821050 rs114116939 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop,maf-5-all-pops 606 chr1 2821619 2821620 rs2606405 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1624.000000,3384.000000, 0.324281,0.675719, maf-5-some-pop,maf-5-all-pops 606 chr1 2821771 2821772 rs143483010 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 606 chr1 2821781 2821782 rs113808827 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, 606 chr1 2821867 2821868 rs2842915 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3806.000000,1202.000000, 0.759984,0.240016, maf-5-some-pop,maf-5-all-pops 606 chr1 2822145 2822146 rs2606406 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1144.000000,3864.000000, 0.228435,0.771565, maf-5-some-pop,maf-5-all-pops 606 chr1 2822411 2822412 rs2842916 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3842.000000,1166.000000, 0.767173,0.232827, maf-5-some-pop,maf-5-all-pops 606 chr1 2822798 2822799 rs117804387 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 606 chr1 2823315 2823316 rs750786 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 955.000000,4053.000000, 0.190695,0.809305, maf-5-some-pop 606 chr1 2823324 2823325 rs11805606 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop,maf-5-all-pops 606 chr1 2823458 2823459 rs12035436 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3803.000000,1205.000000, 0.759385,0.240615, maf-5-some-pop,maf-5-all-pops 606 chr1 2823803 2823804 rs72853318 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,T, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop,maf-5-all-pops 606 chr1 2824170 2824171 rs17384422 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 606 chr1 2824414 2824415 rs139767400 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 255.000000,4753.000000, 0.050919,0.949081, 606 chr1 2824711 2824712 rs115664908 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4946.000000,62.000000, 0.987620,0.012380, 606 chr1 2825169 2825170 rs116681587 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 606 chr1 2826043 2826044 rs113435180 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop,maf-5-all-pops 606 chr1 2826073 2826074 rs74047669 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 606 chr1 2826162 2826163 rs897632 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1500.000000,3508.000000, 0.299521,0.700479, maf-5-some-pop,maf-5-all-pops 606 chr1 2826368 2826369 rs34114281 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB, 2 A,G, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop,maf-5-all-pops 606 chr1 2826586 2826587 rs12738063 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1299.000000,3709.000000, 0.259385,0.740615, maf-5-some-pop,maf-5-all-pops 606 chr1 2827055 2827056 rs117534514 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop,maf-5-all-pops 606 chr1 2827313 2827314 rs117348122 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 606 chr1 2827865 2827866 rs112855539 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop,maf-5-all-pops 606 chr1 2827946 2827947 rs74047672 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 302.000000,4706.000000, 0.060304,0.939696, maf-5-some-pop,maf-5-all-pops 606 chr1 2828015 2828016 rs115734444 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 606 chr1 2828235 2828236 rs2842917 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,ILLUMINA-UK,SC_JCM,SC_SNP, 2 C,G, 4862.000000,146.000000, 0.970847,0.029153, 606 chr1 2828285 2828286 rs111296789 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop,maf-5-all-pops 606 chr1 2828327 2828328 rs74047674 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,ILLUMINA-UK, 2 A,G, 267.000000,4741.000000, 0.053315,0.946685, maf-5-some-pop,maf-5-all-pops 606 chr1 2828385 2828386 rs2842918 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP, 2 C,T, 3381.000000,1627.000000, 0.675120,0.324880, maf-5-some-pop,maf-5-all-pops 606 chr1 2828437 2828438 rs2842919 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1368.000000,3640.000000, 0.273163,0.726837, maf-5-some-pop,maf-5-all-pops 606 chr1 2828470 2828471 rs2606407 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SC_JCM,SC_SNP, 2 C,T, 418.000000,4590.000000, 0.083467,0.916534, maf-5-some-pop,maf-5-all-pops 606 chr1 2828478 2828479 rs114296106 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop,maf-5-all-pops 606 chr1 2828522 2828523 rs76287201 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, 606 chr1 2828597 2828598 rs533567583 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4941.000000,67.000000, 0.986621,0.013379, 606 chr1 2828598 2828598 rs558572106 0 + - - -/TGGGGACTGAGAGCCTGTG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TGGGGACTGAGAGCCTGTG, 4925.000000,83.000000, 0.983427,0.016573, 606 chr1 2828819 2828820 rs2842920 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4440.000000,568.000000, 0.886581,0.113419, maf-5-some-pop,maf-5-all-pops 606 chr1 2828844 2828845 rs2842921 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,T, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop,maf-5-all-pops 606 chr1 2829330 2829331 rs116752944 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 606 chr1 2829386 2829387 rs1869969 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 370.000000,4638.000000, 0.073882,0.926118, maf-5-some-pop,maf-5-all-pops 606 chr1 2829550 2829551 rs1869970 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TSC-CSHL, 2 A,G, 3145.000000,1863.000000, 0.627995,0.372005, maf-5-some-pop,maf-5-all-pops 606 chr1 2829801 2829802 rs114564288 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 606 chr1 2829861 2829862 rs10797359 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1318.000000,3690.000000, 0.263179,0.736821, maf-5-some-pop,maf-5-all-pops 606 chr1 2829921 2829922 rs10797360 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1964.000000,3044.000000, 0.392173,0.607827, maf-5-some-pop,maf-5-all-pops 606 chr1 2830346 2830347 rs12087694 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 606 chr1 2830481 2830482 rs115733133 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop,maf-5-all-pops 606 chr1 2830825 2830826 rs115093155 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop,maf-5-all-pops 606 chr1 2831062 2831063 rs115230160 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop,maf-5-all-pops 606 chr1 2831102 2831103 rs115781785 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 606 chr1 2831285 2831286 rs114356351 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 606 chr1 2831368 2831369 rs2606408 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2079.000000,2929.000000, 0.415136,0.584864, maf-5-some-pop,maf-5-all-pops 606 chr1 2831587 2831588 rs1563475 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3328.000000,1680.000000, 0.664537,0.335463, maf-5-some-pop,maf-5-all-pops 606 chr1 2831789 2831790 rs11590100 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3329.000000,1679.000000, 0.664736,0.335264, maf-5-some-pop,maf-5-all-pops 606 chr1 2832005 2832006 rs114529163 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 606 chr1 2832084 2832085 rs117518188 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 606 chr1 2832142 2832143 rs75900413 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 606 chr1 2832231 2832233 rs199525048 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,TISHKOFF, 2 -,AT, 104.000000,4904.000000, 0.020767,0.979233, 606 chr1 2832250 2832251 rs3001796 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2076.000000,2932.000000, 0.414537,0.585463, 606 chr1 2832305 2832306 rs201398481 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 118.000000,4890.000000, 0.023562,0.976438, 606 chr1 2832408 2832409 rs374331826 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4858.000000,150.000000, 0.970048,0.029952, 606 chr1 2832619 2832623 rs564163919 0 + ACAA ACAA -/ACAA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,ACAA, 1910.000000,3098.000000, 0.381390,0.618610, 606 chr1 2832736 2832737 rs6696118 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop,maf-5-all-pops 606 chr1 2832767 2832768 rs6696129 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 3332.000000,1676.000000, 0.665335,0.334665, 606 chr1 2833035 2833036 rs75767232 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, 606 chr1 2833107 2833108 rs114601607 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,maf-5-all-pops 606 chr1 2833159 2833160 rs1869971 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3393.000000,1615.000000, 0.677516,0.322484, maf-5-some-pop,maf-5-all-pops 606 chr1 2833293 2833294 rs7339944 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1296.000000,3712.000000, 0.258786,0.741214, maf-5-some-pop,maf-5-all-pops 606 chr1 2833331 2833332 rs7340016 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3645.000000,1363.000000, 0.727835,0.272165, maf-5-some-pop,maf-5-all-pops 606 chr1 2833426 2833427 rs2124663 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2687.000000,2321.000000, 0.536542,0.463458, maf-5-some-pop,maf-5-all-pops 606 chr1 2833449 2833450 rs1563466 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2075.000000,2933.000000, 0.414337,0.585663, maf-5-some-pop,maf-5-all-pops 606 chr1 2833610 2833611 rs1563467 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, maf-5-some-pop 606 chr1 2833652 2833653 rs11587665 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3651.000000,1357.000000, 0.729034,0.270966, maf-5-some-pop,maf-5-all-pops 606 chr1 2833743 2833744 rs115729059 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 606 chr1 2833772 2833773 rs60945185 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,T, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop,maf-5-all-pops 606 chr1 2834009 2834010 rs11809099 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3647.000000,1361.000000, 0.728235,0.271765, maf-5-some-pop,maf-5-all-pops 606 chr1 2834324 2834325 rs116154744 0 + G G A/G genomic single by-frequency,by-1000genomes 0.000918 0.0214 unknown exact 1 1 1000GENOMES, 2 A,G, 2.000000,116.000000, 0.016949,0.983051, 606 chr1 2834735 2834736 rs76806510 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 121.000000,4887.000000, 0.024161,0.975839, 606 chr1 2834993 2834994 rs113630354 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 606 chr1 2835075 2835076 rs10909836 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,C, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 606 chr1 2835105 2835106 rs10909837 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,PJP,SC_SNP,TISHKOFF, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop,maf-5-all-pops 606 chr1 2835486 2835487 rs897633 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2726.000000,2282.000000, 0.544329,0.455671, maf-5-some-pop,maf-5-all-pops 606 chr1 2835691 2835692 rs897634 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2451.000000,2557.000000, 0.489417,0.510583, maf-5-some-pop,maf-5-all-pops 606 chr1 2835860 2835861 rs116339983 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 74.000000,4934.000000, 0.014776,0.985224, 606 chr1 2835908 2835909 rs2606409 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2666.000000,2342.000000, 0.532348,0.467652, maf-5-some-pop,maf-5-all-pops 606 chr1 2836017 2836018 rs77010398 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop,maf-5-all-pops 606 chr1 2836031 2836032 rs74049806 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4618.000000,390.000000, 0.922125,0.077875, maf-5-some-pop,maf-5-all-pops 606 chr1 2836254 2836255 rs116641419 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 606 chr1 2836317 2836318 rs78809761 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 606 chr1 2836508 2836509 rs115802620 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 606 chr1 2836554 2836555 rs113794172 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 606 chr1 2836597 2836598 rs113002351 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 606 chr1 2836625 2836626 rs111908081 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop,maf-5-all-pops 606 chr1 2836713 2836714 rs112584950 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,maf-5-all-pops 606 chr1 2836829 2836830 rs115485158 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 606 chr1 2836901 2836902 rs12048204 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 1306.000000,3702.000000, 0.260783,0.739217, maf-5-some-pop,maf-5-all-pops 606 chr1 2837052 2837053 rs12046025 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3231.000000,1777.000000, 0.645168,0.354832, maf-5-some-pop,maf-5-all-pops 606 chr1 2837055 2837056 rs76842411 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 606 chr1 2837274 2837275 rs10797361 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 560.000000,4448.000000, 0.111821,0.888179, maf-5-some-pop,maf-5-all-pops 606 chr1 2837353 2837354 rs77664024 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 G,T, 129.000000,4879.000000, 0.025759,0.974241, 606 chr1 2837377 2837378 rs112425970 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 606 chr1 2837443 2837444 rs55855166 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 389.000000,4619.000000, 0.077676,0.922324, maf-5-some-pop,maf-5-all-pops 606 chr1 2837573 2837574 rs4997491 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1191.000000,3817.000000, 0.237819,0.762181, maf-5-some-pop,maf-5-all-pops 606 chr1 2837577 2837578 rs2889493 0 - G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 606 chr1 2837616 2837617 rs560617090 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSIP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 606 chr1 2837629 2837630 rs936251 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2063.000000,2945.000000, 0.411941,0.588059, maf-5-some-pop,maf-5-all-pops 606 chr1 2837720 2837721 rs112514835 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,C, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop,maf-5-all-pops 606 chr1 2837723 2837724 rs936252 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2947.000000,2061.000000, 0.588458,0.411542, maf-5-some-pop,maf-5-all-pops 606 chr1 2837770 2837771 rs4997489 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 3732.000000,1276.000000, 0.745208,0.254792, maf-5-some-pop,maf-5-all-pops 606 chr1 2837791 2837792 rs34200109 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 3812.000000,1196.000000, 0.761182,0.238818, maf-5-some-pop,maf-5-all-pops 606 chr1 2837841 2837842 rs79784461 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,BL,ENSEMBL,EVA-GONL,GMI,SSMP, 2 C,T, 3695.000000,1313.000000, 0.737819,0.262181, maf-5-some-pop,maf-5-all-pops 606 chr1 2837849 2837850 rs35262314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,SSMP, 2 C,T, 3669.000000,1339.000000, 0.732628,0.267372, maf-5-some-pop,maf-5-all-pops 606 chr1 2837901 2837902 rs534757756 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4925.000000,83.000000, 0.983427,0.016573, 606 chr1 2837924 2837925 rs79087702 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,ENSEMBL,GMI, 2 C,G, 3815.000000,1193.000000, 0.761781,0.238219, 606 chr1 2837961 2837962 rs35781964 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,SSMP, 2 C,G, 1124.000000,3884.000000, 0.224441,0.775559, maf-5-some-pop,maf-5-all-pops 606 chr1 2837996 2837997 rs34146942 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 1183.000000,3825.000000, 0.236222,0.763778, 606 chr1 2838050 2838051 rs76972998 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 C,T, 597.000000,4411.000000, 0.119209,0.880791, 606 chr1 2838091 2838092 rs74576710 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,SSMP, 2 C,G, 120.000000,4888.000000, 0.023962,0.976038, 606 chr1 2838092 2838093 rs77641295 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ENSEMBL, 2 C,T, 120.000000,4888.000000, 0.023962,0.976038, 606 chr1 2838133 2838134 rs373456894 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 104.000000,4904.000000, 0.020767,0.979233, 606 chr1 2838134 2838135 rs551515937 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, 606 chr1 2838223 2838224 rs9730167 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,HGSV,PJP,SSAHASNP,SSMP, 2 A,C, 4474.000000,534.000000, 0.893371,0.106629, 606 chr1 2838460 2838461 rs367586194 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 1296.000000,3712.000000, 0.258786,0.741214, 606 chr1 2838512 2838513 rs78083445 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SSMP, 2 C,T, 1668.000000,3340.000000, 0.333067,0.666933, 606 chr1 2838526 2838527 rs142648794 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 G,T, 175.000000,4833.000000, 0.034944,0.965056, 606 chr1 2838634 2838635 rs111472554 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,maf-5-all-pops 606 chr1 2838705 2838706 rs12022036 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BL,EVA-GONL,GMI,ILLUMINA,SC_SNP,TISHKOFF, 2 G,T, 1775.000000,3233.000000, 0.354433,0.645567, maf-5-some-pop,maf-5-all-pops 606 chr1 2838710 2838711 rs373149951 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 606 chr1 2838716 2838716 rs76875704 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,T, 2471.000000,2537.000000, 0.493411,0.506589, 606 chr1 2838797 2838798 rs12045117 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2494.000000,2514.000000, 0.498003,0.501997, maf-5-some-pop,maf-5-all-pops 606 chr1 2838956 2838957 rs114527421 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, 606 chr1 2839007 2839008 rs10797362 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3188.000000,1820.000000, 0.636581,0.363419, maf-5-some-pop,maf-5-all-pops 606 chr1 2839468 2839469 rs59360717 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,ILLUMINA, 2 A,G, 4455.000000,553.000000, 0.889577,0.110423, 606 chr1 2839469 2839470 rs57571431 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 4454.000000,554.000000, 0.889377,0.110623, 606 chr1 2839505 2839506 rs35758696 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,A, 2472.000000,2536.000000, 0.493610,0.506390, 606 chr1 2839698 2839699 rs77105427 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 132.000000,4876.000000, 0.026358,0.973642, 606 chr1 2839756 2839757 rs4648432 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2561.000000,2447.000000, 0.511382,0.488618, maf-5-some-pop,maf-5-all-pops 606 chr1 2839760 2839761 rs4648350 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2448.000000,2560.000000, 0.488818,0.511182, maf-5-some-pop,maf-5-all-pops 606 chr1 2839787 2839788 rs115331661 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 99.000000,4909.000000, 0.019768,0.980232, 606 chr1 2839807 2839808 rs75001059 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 606 chr1 2839824 2839825 rs4648433 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1892.000000,3116.000000, 0.377796,0.622204, maf-5-some-pop,maf-5-all-pops 606 chr1 2839832 2839833 rs111365648 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 606 chr1 2840027 2840028 rs79034614 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 606 chr1 2840609 2840610 rs4648434 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3092.000000,1916.000000, 0.617412,0.382588, maf-5-some-pop,maf-5-all-pops 606 chr1 2840700 2840701 rs4648435 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2468.000000,2540.000000, 0.492812,0.507188, maf-5-some-pop,maf-5-all-pops 606 chr1 2840886 2840887 rs4648351 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1716.000000,3292.000000, 0.342652,0.657348, maf-5-some-pop,maf-5-all-pops 606 chr1 2840912 2840913 rs4648352 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1716.000000,3292.000000, 0.342652,0.657348, maf-5-some-pop,maf-5-all-pops 606 chr1 2840924 2840925 rs4648353 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2534.000000,2474.000000, 0.505990,0.494010, maf-5-some-pop,maf-5-all-pops 606 chr1 2840942 2840943 rs78141643 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 606 chr1 2841190 2841191 rs12402192 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2471.000000,2537.000000, 0.493411,0.506589, maf-5-some-pop,maf-5-all-pops 606 chr1 2841205 2841206 rs141826222 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, 606 chr1 2841318 2841319 rs116275516 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 606 chr1 2841330 2841331 rs12062218 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2469.000000,2539.000000, 0.493011,0.506989, maf-5-some-pop,maf-5-all-pops 606 chr1 2841341 2841342 rs12058842 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop 606 chr1 2841456 2841457 rs12062269 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2476.000000,2532.000000, 0.494409,0.505591, maf-5-some-pop,maf-5-all-pops 606 chr1 2841484 2841485 rs77382802 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 606 chr1 2841713 2841714 rs9783083 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 A,G, 2273.000000,2735.000000, 0.453874,0.546126, maf-5-some-pop,maf-5-all-pops 606 chr1 2841879 2841880 rs9782915 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2548.000000,2460.000000, 0.508786,0.491214, maf-5-some-pop,maf-5-all-pops 606 chr1 2841994 2841995 rs9783085 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2439.000000,2569.000000, 0.487021,0.512979, maf-5-some-pop,maf-5-all-pops 606 chr1 2842269 2842270 rs2045331 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2276.000000,2732.000000, 0.454473,0.545527, maf-5-some-pop,maf-5-all-pops 606 chr1 2842394 2842395 rs78488395 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 606 chr1 2842481 2842481 rs34795251 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,ABI,BL,BUSHMAN,LUNTER, 2 -,T, 2679.000000,2329.000000, 0.534944,0.465056, 606 chr1 2842746 2842747 rs10797363 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2547.000000,2461.000000, 0.508586,0.491414, maf-5-some-pop,maf-5-all-pops 606 chr1 2843004 2843005 rs75018540 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 606 chr1 2843063 2843064 rs12063994 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2440.000000,2568.000000, 0.487220,0.512780, maf-5-some-pop,maf-5-all-pops 606 chr1 2843179 2843180 rs12097673 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2274.000000,2734.000000, 0.454073,0.545927, maf-5-some-pop,maf-5-all-pops 606 chr1 2843221 2843222 rs12062748 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,PJP,SC_SNP,SSMP, 2 A,G, 2563.000000,2445.000000, 0.511781,0.488219, maf-5-some-pop,maf-5-all-pops 606 chr1 2843246 2843246 rs112848978 0 + - - -/GTTGG genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,GTTGG, 2721.000000,2287.000000, 0.543331,0.456669, 606 chr1 2843380 2843381 rs28361890 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2690.000000,2318.000000, 0.537141,0.462859, maf-5-some-pop,maf-5-all-pops 606 chr1 2843427 2843428 rs28376504 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2237.000000,2771.000000, 0.446685,0.553315, maf-5-some-pop,maf-5-all-pops 606 chr1 2843476 2843477 rs28454301 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2501.000000,2507.000000, 0.499401,0.500599, maf-5-some-pop,maf-5-all-pops 606 chr1 2843589 2843590 rs28580433 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2368.000000,2640.000000, 0.472843,0.527157, maf-5-some-pop,maf-5-all-pops 606 chr1 2843725 2843726 rs117060926 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 606 chr1 2843740 2843741 rs76244452 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 132.000000,4876.000000, 0.026358,0.973642, 606 chr1 2843849 2843850 rs4648436 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2439.000000,2569.000000, 0.487021,0.512979, maf-5-some-pop,maf-5-all-pops 606 chr1 2844066 2844067 rs4648437 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2569.000000,2439.000000, 0.512979,0.487021, maf-5-some-pop,maf-5-all-pops 606 chr1 2844220 2844221 rs114778844 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 606 chr1 2844356 2844357 rs10752729 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1827.000000,3181.000000, 0.364816,0.635184, maf-5-some-pop,maf-5-all-pops 606 chr1 2844373 2844374 rs10752730 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2444.000000,2564.000000, 0.488019,0.511981, maf-5-some-pop,maf-5-all-pops 606 chr1 2844400 2844401 rs10752731 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2842.000000,2166.000000, 0.567492,0.432508, maf-5-some-pop,maf-5-all-pops 606 chr1 2844477 2844478 rs75007673 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 606 chr1 2844589 2844590 rs56243622 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, 606 chr1 2844714 2844715 rs80243175 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 606 chr1 2844803 2844804 rs74049868 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF, 2 A,G, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop,maf-5-all-pops 606 chr1 2844961 2844962 rs10797364 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2164.000000,2844.000000, 0.432109,0.567891, maf-5-some-pop,maf-5-all-pops 606 chr1 2844973 2844974 rs10797365 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2136.000000,2872.000000, 0.426518,0.573482, maf-5-some-pop,maf-5-all-pops 606 chr1 2845173 2845174 rs10797366 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop,maf-5-all-pops 606 chr1 2845242 2845243 rs75252209 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop,maf-5-all-pops 606 chr1 2845358 2845359 rs77791532 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4844.000000,164.000000, 0.967252,0.032748, 606 chr1 2845416 2845417 rs151062370 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 606 chr1 2845493 2845494 rs78926896 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 606 chr1 2845572 2845573 rs79922096 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 138.000000,4870.000000, 0.027556,0.972444, maf-5-some-pop,maf-5-all-pops 606 chr1 2845582 2845583 rs112240488 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,maf-5-all-pops 606 chr1 2845640 2845641 rs4648354 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2733.000000,2275.000000, 0.545727,0.454273, maf-5-some-pop,maf-5-all-pops 606 chr1 2845645 2845646 rs75028066 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 606 chr1 2845751 2845752 rs10797367 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2733.000000,2275.000000, 0.545727,0.454273, maf-5-some-pop,maf-5-all-pops 606 chr1 2845844 2845845 rs35824541 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,G, 2275.000000,2733.000000, 0.454273,0.545727, 606 chr1 2846105 2846106 rs75817036 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 606 chr1 2846273 2846274 rs897635 0 + A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2871.000000,2137.000000, 0.573283,0.426717, maf-5-some-pop,maf-5-all-pops 606 chr1 2846888 2846889 rs111687654 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 606 chr1 2847164 2847165 rs114603433 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 308.000000,4700.000000, 0.061502,0.938498, maf-5-some-pop,maf-5-all-pops 606 chr1 2847219 2847220 rs75725719 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, 606 chr1 2847829 2847830 rs183261030 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 606 chr1 2847875 2847876 rs12023449 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4432.000000,576.000000, 0.884984,0.115016, maf-5-some-pop 606 chr1 2847907 2847908 rs78155663 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 136.000000,4872.000000, 0.027157,0.972844, 606 chr1 2847984 2847985 rs16823193 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 3215.000000,1793.000000, 0.641973,0.358027, maf-5-some-pop,maf-5-all-pops 606 chr1 2847996 2847997 rs4648438 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2524.000000,2484.000000, 0.503994,0.496006, maf-5-some-pop,maf-5-all-pops 606 chr1 2848255 2848256 rs35880479 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP, 2 A,G, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop,maf-5-all-pops 606 chr1 2848362 2848363 rs4648355 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 935.000000,4073.000000, 0.186701,0.813299, maf-5-some-pop 606 chr1 2848795 2848796 rs115154921 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 606 chr1 2848863 2848864 rs75148166 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, 606 chr1 2849069 2849090 rs200290916 0 + ACCAGGGGACAGAGAATAGGG ACCAGGGGACAGAGAATAGGG -/ACCAGGGGACAGAGAATAGGG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,GMI, 2 -,ACCAGGGGACAGAGAATAGGG, 554.000000,4454.000000, 0.110623,0.889377, 606 chr1 2849088 2849089 rs569630447 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 568.000000,4440.000000, 0.113419,0.886581, 606 chr1 2849089 2849090 rs536172276 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 568.000000,4440.000000, 0.113419,0.886581, 606 chr1 2849189 2849190 rs12403214 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 1612.000000,3396.000000, 0.321885,0.678115, maf-5-some-pop,maf-5-all-pops 606 chr1 2849286 2849287 rs77079319 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 134.000000,4874.000000, 0.026757,0.973243, 606 chr1 2849434 2849435 rs4648439 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4453.000000,555.000000, 0.889177,0.110823, maf-5-some-pop 606 chr1 2849513 2849514 rs75911677 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, 606 chr1 2849556 2849557 rs10909841 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3521.000000,1487.000000, 0.703075,0.296925, maf-5-some-pop,maf-5-all-pops 606 chr1 2849943 2849944 rs113224322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 606 chr1 2849971 2849972 rs72853346 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop,maf-5-all-pops 606 chr1 2850111 2850112 rs4648440 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1190.000000,3818.000000, 0.237620,0.762380, maf-5-some-pop,maf-5-all-pops 606 chr1 2850180 2850181 rs4648441 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3682.000000,1326.000000, 0.735224,0.264776, maf-5-some-pop,maf-5-all-pops 606 chr1 2850599 2850600 rs114948117 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4939.000000,69.000000, 0.986222,0.013778, 606 chr1 2851118 2851119 rs10909842 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,TISHKOFF, 2 A,G, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 606 chr1 2851299 2851300 rs185120969 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 60.000000,4948.000000, 0.011981,0.988019, 606 chr1 2851650 2851651 rs79226251 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, 606 chr1 2851954 2851955 rs552714072 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 606 chr1 2851976 2851977 rs72853348 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop,maf-5-all-pops 606 chr1 2852205 2852206 rs1473386 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1987.000000,3021.000000, 0.396765,0.603235, maf-5-some-pop,maf-5-all-pops 606 chr1 2852706 2852707 rs10797368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4445.000000,563.000000, 0.887580,0.112420, maf-5-some-pop 606 chr1 2852824 2852825 rs10797369 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2555.000000,2453.000000, 0.510184,0.489816, maf-5-some-pop,maf-5-all-pops 606 chr1 2853002 2853003 rs12030820 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1983.000000,3025.000000, 0.395966,0.604034, maf-5-some-pop,maf-5-all-pops 606 chr1 2853250 2853251 rs115364044 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 606 chr1 2853611 2853612 rs16823224 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,PERLEGEN, 2 C,G, 4950.000000,58.000000, 0.988419,0.011582, 606 chr1 2853867 2853868 rs114014511 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 606 chr1 2854170 2854171 rs78244632 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, 606 chr1 2854204 2854205 rs61385567 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 2028.000000,2980.000000, 0.404952,0.595048, maf-5-some-pop,maf-5-all-pops 606 chr1 2854272 2854273 rs16823230 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 2890.000000,2118.000000, 0.577077,0.422923, maf-5-some-pop,maf-5-all-pops 606 chr1 2854296 2854297 rs77111854 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, 606 chr1 2854370 2854371 rs6675965 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,T, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 606 chr1 2854460 2854461 rs12120163 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop,maf-5-all-pops 606 chr1 2854571 2854572 rs114097481 0 - C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 3 1000GENOMES,EVA-GONL,ILLUMINA, 4 A,C,G,T, 17.000000,4991.000000,4991.000000,17.000000, 0.001697,0.498303,0.498303,0.001697, rs-cluster-nonoverlapping-alleles 606 chr1 2855068 2855068 rs146355586 0 + - - -/ATGTACACACACACCCGTGCAAGG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,ATGTACACACACACCCGTGCAAGG, 2380.000000,2628.000000, 0.475240,0.524760, 606 chr1 2855110 2855111 rs114810406 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 606 chr1 2855236 2855237 rs78069355 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 606 chr1 2855996 2855997 rs74474058 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, 606 chr1 2857150 2857151 rs79109030 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 606 chr1 2857714 2857715 rs200830709 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 G,T, 64.000000,4944.000000, 0.012780,0.987220, 606 chr1 2858408 2858409 rs16823232 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 4657.000000,351.000000, 0.929912,0.070088, maf-5-some-pop 606 chr1 2858547 2858548 rs12029140 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3034.000000,1974.000000, 0.605831,0.394169, maf-5-some-pop,maf-5-all-pops 606 chr1 2858726 2858727 rs117247316 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, 606 chr1 2859078 2859094 rs372434752 0 + TGGCCCCTCATGTGCT TGGCCCCTCATGTGCT -/TGGCCCCTCATGTGCT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,TGGCCCCTCATGTGCT, 79.000000,4929.000000, 0.015775,0.984225, 606 chr1 2859194 2859195 rs74685152 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4862.000000,146.000000, 0.970847,0.029153, 606 chr1 2859212 2859213 rs74750365 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 146.000000,4862.000000, 0.029153,0.970847, 606 chr1 2859443 2859444 rs111587935 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 606 chr1 2859623 2859624 rs116240953 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 606 chr1 2859632 2859633 rs60405326 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 637.000000,4371.000000, 0.127196,0.872804, maf-5-some-pop,maf-5-all-pops 606 chr1 2859639 2859640 rs116735404 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 68.000000,4940.000000, 0.013578,0.986422, 606 chr1 2859667 2859668 rs79561271 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 606 chr1 2859826 2859827 rs72853352 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4744.000000,264.000000, 0.947284,0.052716, maf-5-some-pop,maf-5-all-pops 606 chr1 2860078 2860079 rs114448010 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 606 chr1 2860649 2860650 rs60964612 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 C,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 606 chr1 2860930 2860931 rs2925499 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1501.000000,3507.000000, 0.299720,0.700280, maf-5-some-pop 606 chr1 2861203 2861211 rs111603921 0 + TGTGTGTC TGTGTGTC -/TGTGTGTC genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER, 2 -,TGTGTGTC, 1972.000000,3036.000000, 0.393770,0.606230, 606 chr1 2861281 2861282 rs201268057 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 133.000000,4875.000000, 0.026557,0.973442, 606 chr1 2861282 2861283 rs202224385 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 133.000000,4875.000000, 0.026557,0.973442, 606 chr1 2861285 2861286 rs200374599 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 133.000000,4875.000000, 0.026557,0.973442, 606 chr1 2861286 2861287 rs201450328 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 133.000000,4875.000000, 0.026557,0.973442, 606 chr1 2861391 2861392 rs558482786 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 349.000000,4659.000000, 0.069688,0.930312, 606 chr1 2861393 2861394 rs575860972 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 258.000000,4750.000000, 0.051518,0.948482, 606 chr1 2861408 2861410 rs142522621 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,GMI,PJP,SSMP, 2 -,GA, 588.000000,4420.000000, 0.117412,0.882588, 606 chr1 2861438 2861439 rs111203484 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,GMI,PJP,SSMP,TISHKOFF, 2 A,G, 1975.000000,3033.000000, 0.394369,0.605631, 606 chr1 2861453 2861455 rs200267804 0 + TG TG -/TG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,TG, 146.000000,4862.000000, 0.029153,0.970847, 606 chr1 2861509 2861511 rs200502994 0 + TG TG -/TG genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,TG, 88.000000,4920.000000, 0.017572,0.982428, 606 chr1 2861565 2861567 rs199764630 0 + TG TG -/TG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TG, 354.000000,4654.000000, 0.070687,0.929313, 606 chr1 2861574 2861575 rs35777632 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,GMI,SSMP,TISHKOFF, 2 A,G, 1227.000000,3781.000000, 0.245008,0.754992, 606 chr1 2861630 2861631 rs36027527 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1227.000000,3781.000000, 0.245008,0.754992, 606 chr1 2861635 2861636 rs187316469 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,T, 135.000000,4873.000000, 0.026957,0.973043, 606 chr1 2861659 2861663 rs200780625 0 + TGTC TGTC -/TGTC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TGTC, 60.000000,4948.000000, 0.011981,0.988019, 606 chr1 2861780 2861781 rs76894819 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, 606 chr1 2861796 2861797 rs61094749 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 501.000000,4507.000000, 0.100040,0.899960, maf-5-some-pop,maf-5-all-pops 606 chr1 2861839 2861840 rs58636688 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2566.000000,2442.000000, 0.512380,0.487620, 606 chr1 2861881 2861882 rs58118046 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2641.000000,2367.000000, 0.527356,0.472644, maf-5-some-pop,maf-5-all-pops 606 chr1 2862065 2862066 rs115170528 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 606 chr1 2862319 2862320 rs7539511 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3041.000000,1967.000000, 0.607228,0.392772, maf-5-some-pop,maf-5-all-pops 606 chr1 2862401 2862402 rs72853354 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop,maf-5-all-pops 606 chr1 2862425 2862426 rs148108793 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, 606 chr1 2862479 2862480 rs3947964 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3035.000000,1973.000000, 0.606030,0.393970, maf-5-some-pop,maf-5-all-pops 606 chr1 2862480 2862481 rs74047517 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 500.000000,4508.000000, 0.099840,0.900160, maf-5-some-pop 606 chr1 2862618 2862619 rs72853356 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4509.000000,499.000000, 0.900359,0.099641, maf-5-some-pop,maf-5-all-pops 606 chr1 2862694 2862695 rs72853358 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop,maf-5-all-pops 606 chr1 2862695 2862696 rs74616017 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 606 chr1 2862854 2862855 rs12035456 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2554.000000,2454.000000, 0.509984,0.490016, maf-5-some-pop,maf-5-all-pops 606 chr1 2863030 2863031 rs115433834 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4944.000000,64.000000, 0.987220,0.012780, 606 chr1 2863091 2863092 rs116075647 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 606 chr1 2863114 2863115 rs4648442 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2592.000000,2416.000000, 0.517572,0.482428, maf-5-some-pop,maf-5-all-pops 606 chr1 2863530 2863531 rs72853360 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4715.000000,293.000000, 0.941494,0.058506, maf-5-some-pop,maf-5-all-pops 606 chr1 2863645 2863646 rs74047522 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop,maf-5-all-pops 606 chr1 2863737 2863738 rs115152136 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 606 chr1 2863783 2863784 rs77815797 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, 606 chr1 2863845 2863846 rs72853361 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 639.000000,4369.000000, 0.127596,0.872404, maf-5-some-pop,maf-5-all-pops 606 chr1 2863962 2863963 rs10909843 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2460.000000,2548.000000, 0.491214,0.508786, maf-5-some-pop,maf-5-all-pops 606 chr1 2864014 2864015 rs12028979 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3036.000000,1972.000000, 0.606230,0.393770, maf-5-some-pop,maf-5-all-pops 606 chr1 2864268 2864269 rs115082419 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,ILLUMINA, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 606 chr1 2864529 2864530 rs113148077 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 184.000000,4824.000000, 0.036741,0.963259, maf-5-some-pop,maf-5-all-pops 606 chr1 2864629 2864630 rs115541492 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4810.000000,198.000000, 0.960463,0.039537, maf-5-some-pop,maf-5-all-pops 606 chr1 2864924 2864925 rs57232831 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 4547.000000,461.000000, 0.907947,0.092053, maf-5-some-pop,maf-5-all-pops 606 chr1 2865013 2865014 rs60920732 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 606 chr1 2865138 2865139 rs113458897 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 606 chr1 2865344 2865345 rs55983752 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 311.000000,4697.000000, 0.062101,0.937899, maf-5-some-pop,maf-5-all-pops 606 chr1 2865362 2865363 rs76711696 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 141.000000,4867.000000, 0.028155,0.971845, 606 chr1 2865777 2865778 rs7548727 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 592.000000,4416.000000, 0.118211,0.881789, maf-5-some-pop 606 chr1 2865900 2865901 rs7541664 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop 606 chr1 2866071 2866071 rs533377619 0 + - - -/AGCAACAAG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AGCAACAAG, 4696.000000,312.000000, 0.937700,0.062300, 606 chr1 2866093 2866094 rs7532959 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,WI_SSAHASNP, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 606 chr1 2866823 2866824 rs117593540 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 606 chr1 2866931 2866932 rs2606413 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3005.000000,2003.000000, 0.600040,0.399960, maf-5-some-pop,maf-5-all-pops 606 chr1 2866971 2866972 rs2842929 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3006.000000,2002.000000, 0.600240,0.399760, maf-5-some-pop,maf-5-all-pops 606 chr1 2867074 2867075 rs76235258 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop 606 chr1 2867506 2867507 rs117502578 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 606 chr1 2867610 2867611 rs2606415 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2301.000000,2707.000000, 0.459465,0.540535, maf-5-some-pop,maf-5-all-pops 606 chr1 2867688 2867689 rs117191528 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 142.000000,4866.000000, 0.028355,0.971645, 606 chr1 2867742 2867743 rs2606416 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2299.000000,2709.000000, 0.459065,0.540935, maf-5-some-pop,maf-5-all-pops 606 chr1 2867745 2867746 rs2842930 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2303.000000,2705.000000, 0.459864,0.540136, maf-5-some-pop,maf-5-all-pops 606 chr1 2867753 2867754 rs11805076 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,CSHL-HAPMAP, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 606 chr1 2867769 2867770 rs2606417 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2304.000000,2704.000000, 0.460064,0.539936, maf-5-some-pop,maf-5-all-pops 606 chr1 2867829 2867830 rs111911940 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,T, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop 606 chr1 2867836 2867837 rs116957063 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 606 chr1 2867903 2867904 rs2842931 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP, 2 A,G, 2849.000000,2159.000000, 0.568890,0.431110, maf-5-some-pop,maf-5-all-pops 606 chr1 2867915 2867916 rs114656433 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 606 chr1 2867931 2867932 rs2842932 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,WI_SSAHASNP, 2 G,T, 2989.000000,2019.000000, 0.596845,0.403155, maf-5-some-pop,maf-5-all-pops 606 chr1 2867960 2867961 rs2842933 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 1999.000000,3009.000000, 0.399161,0.600839, maf-5-some-pop,maf-5-all-pops 606 chr1 2868155 2868156 rs74543740 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 606 chr1 2868717 2868718 rs114084516 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 606 chr1 2868891 2868892 rs78580636 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, 606 chr1 2869323 2869325 rs34869376 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 10 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,CT, 2127.000000,2881.000000, 0.424720,0.575280, 606 chr1 2869409 2869409 rs34009406 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,C, 2863.000000,2145.000000, 0.571685,0.428315, 606 chr1 2869591 2869592 rs141160847 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WARNICH_LAB, 2 A,T, 4943.000000,65.000000, 0.987021,0.012979, 606 chr1 2869912 2869913 rs2842906 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2145.000000,2863.000000, 0.428315,0.571685, maf-5-some-pop,maf-5-all-pops 606 chr1 2869944 2869945 rs77899887 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, 606 chr1 2869960 2869961 rs77240817 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 142.000000,4866.000000, 0.028355,0.971645, 606 chr1 2870022 2870023 rs114297674 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 606 chr1 2870364 2870365 rs2842907 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF, 2 A,C, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop,maf-5-all-pops 606 chr1 2870554 2870555 rs6661336 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 A,G, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 606 chr1 2870747 2870748 rs11806462 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 606 chr1 2870849 2870850 rs2606418 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2865.000000,2143.000000, 0.572085,0.427915, maf-5-some-pop,maf-5-all-pops 606 chr1 2871905 2871906 rs2606419 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2294.000000,2714.000000, 0.458067,0.541933, maf-5-some-pop,maf-5-all-pops 606 chr1 2871917 2871918 rs142813593 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4865.000000,143.000000, 0.971446,0.028554, 606 chr1 2872595 2872595 rs142722390 0 + - - -/T/TTT genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,GMI,LUNTER,SSMP,WARNICH_LAB, 3 -,T,TTT, 3025.000000,1932.000000,51.000000, 0.604033,0.385783,0.010184, 606 chr1 2872807 2872808 rs6424063 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,PERLEGEN,PJP,WI_SSAHASNP, 2 A,G, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 606 chr1 2873484 2873485 rs1456468 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 2351.000000,2657.000000, 0.469449,0.530551, maf-5-some-pop,maf-5-all-pops 606 chr1 2873510 2873511 rs113592114 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 606 chr1 2873651 2873652 rs80220832 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 142.000000,4866.000000, 0.028355,0.971645, 606 chr1 2874000 2874001 rs143446057 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 606 chr1 2874429 2874430 rs77497254 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 53.000000,4955.000000, 0.010583,0.989417, 606 chr1 2874758 2874759 rs80040529 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, 606 chr1 2875097 2875098 rs115204479 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, 606 chr1 2875750 2875751 rs77768630 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, 606 chr1 2876263 2876264 rs111909013 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,G, 184.000000,4824.000000, 0.036741,0.963259, maf-5-some-pop,maf-5-all-pops 606 chr1 2876405 2876406 rs74404730 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop,maf-5-all-pops 606 chr1 2876524 2876525 rs10909845 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3231.000000,1777.000000, 0.645168,0.354832, maf-5-some-pop,maf-5-all-pops 606 chr1 2876619 2876620 rs12132266 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,HGSV,SC_SNP,SSAHASNP,SSMP, 2 C,G, 2647.000000,2361.000000, 0.528554,0.471446, 606 chr1 2876650 2876651 rs12129394 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,HGSV,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1342.000000,3666.000000, 0.267971,0.732029, 606 chr1 2876679 2876680 rs369056231 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 89.000000,4919.000000, 0.017772,0.982228, 606 chr1 2876741 2876742 rs371715177 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 606 chr1 2876752 2876753 rs6659124 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, 606 chr1 2876769 2876770 rs6659133 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL, 2 C,G, 4653.000000,355.000000, 0.929113,0.070887, 606 chr1 2876770 2876771 rs6664034 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 A,G, 4322.000000,686.000000, 0.863019,0.136981, 606 chr1 2876782 2876783 rs77990718 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 606 chr1 2877124 2877125 rs114790293 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 606 chr1 2877195 2877196 rs112661077 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB, 2 C,T, 4696.000000,312.000000, 0.937700,0.062300, 606 chr1 2877367 2877368 rs58424045 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop,maf-5-all-pops 606 chr1 2877476 2877477 rs60288514 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 848.000000,4160.000000, 0.169329,0.830671, maf-5-some-pop,maf-5-all-pops 606 chr1 2877848 2877849 rs115112427 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 94.000000,4914.000000, 0.018770,0.981230, 606 chr1 2877912 2877913 rs113837590 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 606 chr1 2878223 2878224 rs12084136 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 606 chr1 2878249 2878250 rs10909846 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop,maf-5-all-pops 606 chr1 2878306 2878307 rs2485949 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop 606 chr1 2878322 2878323 rs2495271 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4662.000000,346.000000, 0.930911,0.069090, maf-5-some-pop,maf-5-all-pops 606 chr1 2878365 2878366 rs11583804 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2069.000000,2939.000000, 0.413139,0.586861, clinically-assoc,maf-5-some-pop,maf-5-all-pops,has-omim-omia 606 chr1 2878490 2878491 rs12081983 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,TISHKOFF, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 606 chr1 2879423 2879424 rs75118275 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop,maf-5-all-pops 606 chr1 2879459 2879460 rs6659552 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 993.000000,4015.000000, 0.198283,0.801717, maf-5-some-pop 606 chr1 2879639 2879640 rs878201 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop 606 chr1 2879738 2879739 rs12728758 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,SSAHASNP, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, 606 chr1 2879805 2879806 rs57176631 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop,maf-5-all-pops 606 chr1 2880091 2880092 rs147482017 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4819.000000,189.000000, 0.962260,0.037740, 606 chr1 2880122 2880123 rs74596937 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4439.000000,569.000000, 0.886382,0.113618, maf-5-some-pop,maf-5-all-pops 606 chr1 2880361 2880362 rs112972298 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 55.000000,4953.000000, 0.010982,0.989018, 606 chr1 2880383 2880384 rs3001799 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3755.000000,1253.000000, 0.749800,0.250200, maf-5-some-pop,maf-5-all-pops 606 chr1 2881241 2881242 rs28557265 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,SSAHASNP,TISHKOFF, 2 A,G, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 606 chr1 2881643 2881644 rs113480652 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,T, 256.000000,4752.000000, 0.051118,0.948882, 606 chr1 2882034 2882035 rs3001800 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3962.000000,1046.000000, 0.791134,0.208866, maf-5-some-pop,maf-5-all-pops 606 chr1 2882168 2882169 rs60774890 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 266.000000,4742.000000, 0.053115,0.946885, maf-5-some-pop,maf-5-all-pops 606 chr1 2882652 2882653 rs2993505 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3774.000000,1234.000000, 0.753594,0.246406, maf-5-some-pop,maf-5-all-pops 606 chr1 2882830 2882831 rs79715964 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, 606 chr1 2883040 2883041 rs10909847 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3382.000000,1626.000000, 0.675319,0.324681, maf-5-some-pop,maf-5-all-pops 606 chr1 2883141 2883142 rs74047565 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop 606 chr1 2883163 2883164 rs115177481 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 607 chr1 2883615 2883616 rs115704767 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 607 chr1 2883624 2883625 rs75308850 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 607 chr1 2883706 2883707 rs148484286 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 169.000000,4839.000000, 0.033746,0.966254, 607 chr1 2883913 2883914 rs74047566 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop,maf-5-all-pops 607 chr1 2884143 2884144 rs2993506 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3810.000000,1198.000000, 0.760783,0.239217, maf-5-some-pop,maf-5-all-pops 607 chr1 2884151 2884152 rs115324692 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 607 chr1 2884352 2884353 rs146701363 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 607 chr1 2884424 2884425 rs74047568 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 227.000000,4781.000000, 0.045327,0.954673, maf-5-some-pop,maf-5-all-pops 607 chr1 2884537 2884538 rs56334308 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop 607 chr1 2884551 2884552 rs2788090 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3610.000000,1398.000000, 0.720847,0.279153, maf-5-some-pop,maf-5-all-pops 607 chr1 2884570 2884571 rs114829578 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 G,T, 4931.000000,77.000000, 0.984625,0.015375, 607 chr1 2884586 2884587 rs2842923 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3382.000000,1626.000000, 0.675319,0.324681, maf-5-some-pop 607 chr1 2884732 2884733 rs74047569 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 607 chr1 2884849 2884849 rs558004113 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 3860.000000,1148.000000, 0.770767,0.229233, 607 chr1 2885333 2885334 rs12080287 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop 607 chr1 2885357 2885358 rs12080290 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,HGSV,ILLUMINA-UK,PJP,SC_SNP,TISHKOFF, 2 G,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop 607 chr1 2885398 2885399 rs59345000 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 4744.000000,264.000000, 0.947284,0.052716, maf-5-some-pop,maf-5-all-pops 607 chr1 2885436 2885437 rs59743057 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4792.000000,216.000000, 0.956869,0.043131, maf-5-some-pop 607 chr1 2885549 2885550 rs56151055 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 607 chr1 2886122 2886123 rs2842924 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1695.000000,3313.000000, 0.338458,0.661542, maf-5-some-pop,maf-5-all-pops 607 chr1 2886141 2886142 rs17391486 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,PERLEGEN, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 607 chr1 2886164 2886165 rs114635328 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 607 chr1 2886355 2886356 rs2842925 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 799.000000,4209.000000, 0.159545,0.840455, maf-5-some-pop 607 chr1 2886388 2886389 rs78232041 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 458.000000,4550.000000, 0.091454,0.908546, maf-5-some-pop,maf-5-all-pops 607 chr1 2886465 2886466 rs12752801 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4545.000000,463.000000, 0.907548,0.092452, maf-5-some-pop 607 chr1 2886803 2886804 rs1104934 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TSC-CSHL, 2 C,T, 4599.000000,409.000000, 0.918331,0.081669, maf-5-some-pop 607 chr1 2886902 2886903 rs72853379 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 643.000000,4365.000000, 0.128395,0.871605, maf-5-some-pop 607 chr1 2886948 2886949 rs376546216 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4851.000000,157.000000, 0.968650,0.031350, 607 chr1 2887155 2887156 rs59295163 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB, 2 G,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 607 chr1 2887219 2887220 rs117105675 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 G,T, 4828.000000,180.000000, 0.964058,0.035942, 607 chr1 2887377 2887378 rs74542721 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop,maf-5-all-pops 607 chr1 2887417 2887418 rs12731895 0 + T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2443.000000,2565.000000, 0.487819,0.512181, maf-5-some-pop,maf-5-all-pops 607 chr1 2887468 2887469 rs12727338 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2085.000000,2923.000000, 0.416334,0.583666, maf-5-some-pop,maf-5-all-pops 607 chr1 2887561 2887561 rs35085736 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,SSMP,TISHKOFF, 2 -,C, 2566.000000,2442.000000, 0.512380,0.487620, 607 chr1 2887674 2887675 rs4648443 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2405.000000,2603.000000, 0.480232,0.519768, maf-5-some-pop,maf-5-all-pops 607 chr1 2887854 2887855 rs60542493 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop,maf-5-all-pops 607 chr1 2887874 2887875 rs79257629 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 458.000000,4550.000000, 0.091454,0.908546, maf-5-some-pop 607 chr1 2887934 2887935 rs112151667 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop,maf-5-all-pops 607 chr1 2888338 2888339 rs114256110 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 607 chr1 2888401 2888402 rs75742273 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 353.000000,4655.000000, 0.070487,0.929513, maf-5-some-pop,maf-5-all-pops 607 chr1 2888441 2888442 rs116721364 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 607 chr1 2888460 2888461 rs10797371 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4107.000000,901.000000, 0.820088,0.179912, maf-5-some-pop 607 chr1 2888687 2888688 rs115489939 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 607 chr1 2889045 2889046 rs71634305 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 607 chr1 2889104 2889105 rs7527392 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 353.000000,4655.000000, 0.070487,0.929513, maf-5-some-pop 607 chr1 2889121 2889122 rs72853384 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4538.000000,470.000000, 0.906150,0.093850, maf-5-some-pop,maf-5-all-pops 607 chr1 2889158 2889159 rs74405447 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop,maf-5-all-pops 607 chr1 2889246 2889247 rs117970051 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4807.000000,201.000000, 0.959864,0.040136, maf-5-some-pop,maf-5-all-pops 607 chr1 2889534 2889535 rs78512175 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop,maf-5-all-pops 607 chr1 2889548 2889549 rs2495273 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4951.000000,57.000000, 0.988618,0.011382, 607 chr1 2889725 2889726 rs61047340 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB, 2 C,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 607 chr1 2889867 2889868 rs115162032 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 607 chr1 2890233 2890234 rs115857911 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 51.000000,4957.000000, 0.010184,0.989816, 607 chr1 2890344 2890345 rs4648445 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2410.000000,2598.000000, 0.481230,0.518770, maf-5-some-pop,maf-5-all-pops 607 chr1 2890436 2890437 rs138054705 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 106.000000,4902.000000, 0.021166,0.978834, 607 chr1 2890713 2890714 rs4648446 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2597.000000,2411.000000, 0.518570,0.481430, maf-5-some-pop,maf-5-all-pops 607 chr1 2890918 2890919 rs9660887 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,maf-5-all-pops 607 chr1 2890953 2890954 rs35060945 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 2672.000000,2336.000000, 0.533546,0.466454, maf-5-some-pop,maf-5-all-pops 607 chr1 2891075 2891076 rs118015861 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4807.000000,201.000000, 0.959864,0.040136, maf-5-some-pop,maf-5-all-pops 607 chr1 2891114 2891115 rs9661752 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 977.000000,4031.000000, 0.195088,0.804912, maf-5-some-pop,maf-5-all-pops 607 chr1 2891127 2891128 rs35377179 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 A,C, 2414.000000,2594.000000, 0.482029,0.517971, maf-5-some-pop,maf-5-all-pops 607 chr1 2891128 2891129 rs9660910 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA-UK,PJP,SSMP,WI_SSAHASNP, 2 A,G, 1177.000000,3831.000000, 0.235024,0.764976, maf-5-some-pop,maf-5-all-pops 607 chr1 2891225 2891226 rs371503355 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, 607 chr1 2891246 2891247 rs138584791 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,PJP, 2 C,T, 4117.000000,891.000000, 0.822085,0.177915, 607 chr1 2891257 2891258 rs111670545 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,MPI_MOLGEN,PJP, 2 A,C, 1737.000000,3271.000000, 0.346845,0.653155, 607 chr1 2891277 2891278 rs61763599 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 2618.000000,2390.000000, 0.522764,0.477236, 607 chr1 2891282 2891283 rs61763638 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB, 2 C,G, 2812.000000,2196.000000, 0.561502,0.438498, 607 chr1 2891327 2891328 rs185062121 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4941.000000,67.000000, 0.986621,0.013379, 607 chr1 2891347 2891348 rs113974915 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 607 chr1 2891585 2891586 rs12046122 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2410.000000,2598.000000, 0.481230,0.518770, maf-5-some-pop,maf-5-all-pops 607 chr1 2892923 2892924 rs12096719 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2486.000000,2522.000000, 0.496406,0.503594, maf-5-some-pop,maf-5-all-pops 607 chr1 2892978 2892979 rs77651426 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 607 chr1 2893668 2893669 rs147151323 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BL, 2 A,G, 1869.000000,3139.000000, 0.373203,0.626797, 607 chr1 2893863 2893864 rs114102008 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 607 chr1 2893987 2893988 rs558195103 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 77.000000,4931.000000, 0.015375,0.984625, 607 chr1 2894220 2894221 rs549593421 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 61.000000,4947.000000, 0.012180,0.987819, 607 chr1 2894317 2894318 rs111161780 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 212.000000,4796.000000, 0.042332,0.957668, 607 chr1 2894447 2894448 rs536349930 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,SSIP, 2 -,A, 60.000000,4948.000000, 0.011981,0.988019, 607 chr1 2894464 2894465 rs67049738 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 2520.000000,2488.000000, 0.503195,0.496805, maf-5-some-pop,maf-5-all-pops 607 chr1 2894469 2894470 rs75338094 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 184.000000,4824.000000, 0.036741,0.963259, maf-5-some-pop,maf-5-all-pops 607 chr1 2894521 2894522 rs372031960 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, 607 chr1 2894631 2894632 rs12134902 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4723.000000,285.000000, 0.943091,0.056909, maf-5-some-pop,maf-5-all-pops 607 chr1 2894909 2894910 rs56877975 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4232.000000,776.000000, 0.845048,0.154952, maf-5-some-pop,maf-5-all-pops 607 chr1 2895163 2895164 rs114982555 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop,maf-5-all-pops 607 chr1 2895175 2895176 rs72853394 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4788.000000,220.000000, 0.956070,0.043930, maf-5-some-pop,maf-5-all-pops 607 chr1 2895199 2895200 rs12036449 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2487.000000,2521.000000, 0.496605,0.503395, maf-5-some-pop,maf-5-all-pops 607 chr1 2895481 2895482 rs149101396 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,SSMP,TISHKOFF,WARNICH_LAB, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 607 chr1 2895552 2895553 rs34183832 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3860.000000,1148.000000, 0.770767,0.229233, maf-5-some-pop,maf-5-all-pops 607 chr1 2895567 2895568 rs139151626 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 193.000000,4815.000000, 0.038538,0.961462, 607 chr1 2895644 2895645 rs113702939 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,C, 581.000000,4427.000000, 0.116014,0.883986, 607 chr1 2895805 2895806 rs12746525 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2777.000000,2231.000000, 0.554513,0.445487, maf-5-some-pop 607 chr1 2895864 2895865 rs12731464 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2510.000000,2498.000000, 0.501198,0.498802, maf-5-some-pop,maf-5-all-pops 607 chr1 2896051 2896052 rs12746985 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2497.000000,2511.000000, 0.498602,0.501398, maf-5-some-pop,maf-5-all-pops 607 chr1 2896105 2896106 rs77497600 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4682.000000,326.000000, 0.934904,0.065096, maf-5-some-pop 607 chr1 2896507 2896508 rs7519674 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2169.000000,2839.000000, 0.433107,0.566893, maf-5-some-pop,maf-5-all-pops 607 chr1 2896731 2896732 rs57768421 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 607 chr1 2896734 2896735 rs7533362 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1554.000000,3454.000000, 0.310304,0.689696, maf-5-some-pop,maf-5-all-pops,microattr-tpa 607 chr1 2896783 2896784 rs60402802 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 607 chr1 2897083 2897084 rs10909849 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1215.000000,3793.000000, 0.242612,0.757388, maf-5-some-pop,maf-5-all-pops 607 chr1 2897101 2897102 rs61049086 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,G, 4851.000000,157.000000, 0.968650,0.031350, 607 chr1 2897168 2897169 rs111575675 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop 607 chr1 2897454 2897455 rs3001801 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP, 2 C,T, 3793.000000,1215.000000, 0.757388,0.242612, maf-5-some-pop,maf-5-all-pops 607 chr1 2897473 2897474 rs184819749 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 54.000000,4954.000000, 0.010783,0.989217, 607 chr1 2897585 2897586 rs150255475 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,EVA-GONL,GMI,SSMP, 2 A,G, 804.000000,4204.000000, 0.160543,0.839457, 607 chr1 2897593 2897594 rs71503049 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP, 2 A,G, 3.000000,7.000000, 0.300000,0.700000, 607 chr1 2897600 2897601 rs554646584 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 607 chr1 2897615 2897616 rs61763639 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 2097.000000,2911.000000, 0.418730,0.581270, 607 chr1 2897706 2897707 rs61763640 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop,maf-5-all-pops 607 chr1 2897850 2897851 rs143006201 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF,WARNICH_LAB, 2 -,C, 727.000000,4281.000000, 0.145168,0.854832, 607 chr1 2897875 2897876 rs35490531 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 900.000000,4108.000000, 0.179712,0.820288, maf-5-some-pop 607 chr1 2897903 2897904 rs35529252 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 3561.000000,1447.000000, 0.711062,0.288938, maf-5-some-pop,maf-5-all-pops 607 chr1 2897967 2897968 rs56335850 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 4549.000000,459.000000, 0.908347,0.091653, maf-5-some-pop,maf-5-all-pops 607 chr1 2898000 2898000 rs539746178 0 + - - -/CCCCT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CCCCT, 1204.000000,3804.000000, 0.240415,0.759585, 607 chr1 2898198 2898199 rs112563471 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 607 chr1 2898486 2898487 rs148203772 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, 607 chr1 2898493 2898494 rs17391563 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,PERLEGEN, 2 C,T, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 607 chr1 2898514 2898515 rs6688998 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop,maf-5-all-pops 607 chr1 2898555 2898556 rs6681331 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop,maf-5-all-pops 607 chr1 2898730 2898731 rs6689265 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCM_SSAHASNP,PJP, 2 A,T, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop 607 chr1 2898959 2898960 rs6681741 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4096.000000,912.000000, 0.817891,0.182109, maf-5-some-pop 607 chr1 2899337 2899338 rs12041042 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop,maf-5-all-pops 607 chr1 2899348 2899349 rs12043738 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4122.000000,886.000000, 0.823083,0.176917, maf-5-some-pop,maf-5-all-pops 607 chr1 2899357 2899358 rs74050023 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 607 chr1 2899487 2899488 rs12046140 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 920.000000,4088.000000, 0.183706,0.816294, maf-5-some-pop,maf-5-all-pops 607 chr1 2899537 2899538 rs114267027 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 607 chr1 2899602 2899603 rs11586705 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 607 chr1 2899647 2899648 rs7529459 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 G,T, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop 607 chr1 2899648 2899648 rs144441412 0 + - - -/CCAGGT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,CCAGGT, 4756.000000,252.000000, 0.949681,0.050320, 607 chr1 2899696 2899697 rs115202264 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 607 chr1 2899714 2899715 rs114257355 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 607 chr1 2900265 2900266 rs12087248 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 607 chr1 2900372 2900372 rs35024254 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,ABI,LUNTER,TISHKOFF, 2 -,C, 4775.000000,233.000000, 0.953474,0.046526, 607 chr1 2900505 2900506 rs150123158 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 607 chr1 2900921 2900922 rs7546134 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 4595.000000,413.000000, 0.917532,0.082468, maf-5-some-pop,maf-5-all-pops 607 chr1 2901117 2901118 rs72853402 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 607 chr1 2901472 2901473 rs116778463 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 607 chr1 2901541 2901542 rs114577295 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 607 chr1 2901666 2901667 rs57509069 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,T, 366.000000,4642.000000, 0.073083,0.926917, maf-5-some-pop,maf-5-all-pops 607 chr1 2901735 2901736 rs151173268 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, 607 chr1 2901950 2901951 rs12088934 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 607 chr1 2902226 2902227 rs16823022 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 G,T, 4650.000000,358.000000, 0.928514,0.071486, maf-5-some-pop 607 chr1 2902319 2902320 rs114958767 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 607 chr1 2902358 2902359 rs58396560 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,HGSV, 2 A,T, 55.000000,4953.000000, 0.010982,0.989018, 607 chr1 2902572 2902573 rs368564500 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,WARNICH_LAB, 2 -,A, 1455.000000,3553.000000, 0.290535,0.709465, 607 chr1 2902573 2902573 rs149881154 0 + - - -/TCCATCCTCCATCC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TCCATCCTCCATCC, 2774.000000,2234.000000, 0.553914,0.446086, 607 chr1 2903379 2903380 rs11807605 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 272.000000,4736.000000, 0.054313,0.945687, maf-5-some-pop 607 chr1 2903576 2903577 rs4350139 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1027.000000,3981.000000, 0.205072,0.794928, maf-5-some-pop,maf-5-all-pops 607 chr1 2903627 2903628 rs4630067 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 G,T, 368.000000,4640.000000, 0.073482,0.926518, maf-5-some-pop,maf-5-all-pops 607 chr1 2903724 2903725 rs79598682 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,MPI_MOLGEN, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, 607 chr1 2903921 2903922 rs60245446 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 G,T, 368.000000,4640.000000, 0.073482,0.926518, maf-5-some-pop,maf-5-all-pops 607 chr1 2904054 2904055 rs12088315 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop,maf-5-all-pops 607 chr1 2904144 2904145 rs72855005 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4737.000000,271.000000, 0.945887,0.054113, maf-5-some-pop,maf-5-all-pops 607 chr1 2904479 2904480 rs149995156 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 86.000000,4922.000000, 0.017173,0.982827, 607 chr1 2904634 2904635 rs58605112 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop,maf-5-all-pops 607 chr1 2905085 2905086 rs12085718 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,SC_SNP,TISHKOFF, 2 G,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop,maf-5-all-pops 607 chr1 2905176 2905177 rs12089663 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop 607 chr1 2905368 2905369 rs115761470 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 607 chr1 2905448 2905449 rs113202730 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 607 chr1 2905604 2905605 rs10909852 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1062.000000,3946.000000, 0.212061,0.787939, maf-5-some-pop 607 chr1 2905781 2905793 rs201742731 0 + CCATCCATCCAC CCATCCATCCAC -/CCATCCATCCAC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CCATCCATCCAC, 56.000000,4952.000000, 0.011182,0.988818, 607 chr1 2905826 2905827 rs80165049 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 607 chr1 2906359 2906360 rs57643164 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 4647.000000,361.000000, 0.927915,0.072085, maf-5-some-pop,maf-5-all-pops 607 chr1 2906693 2906694 rs115312541 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 607 chr1 2906991 2906992 rs72855006 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 268.000000,4740.000000, 0.053514,0.946486, maf-5-some-pop,maf-5-all-pops 607 chr1 2907189 2907190 rs10909853 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,PJP,SC_SNP, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 607 chr1 2907434 2907435 rs7546695 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1167.000000,3841.000000, 0.233027,0.766973, maf-5-some-pop,maf-5-all-pops 607 chr1 2907482 2907483 rs72855007 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, 607 chr1 2907666 2907667 rs12411019 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP, 2 C,T, 480.000000,4528.000000, 0.095847,0.904153, maf-5-some-pop,maf-5-all-pops 607 chr1 2907979 2907980 rs58882615 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 A,T, 4528.000000,480.000000, 0.904153,0.095847, maf-5-some-pop,maf-5-all-pops 607 chr1 2908069 2908070 rs10909854 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3948.000000,1060.000000, 0.788339,0.211661, maf-5-some-pop,maf-5-all-pops 607 chr1 2908387 2908388 rs10909855 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3988.000000,1020.000000, 0.796326,0.203674, maf-5-some-pop 607 chr1 2908745 2908746 rs111815209 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop 607 chr1 2908805 2908806 rs72629452 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 477.000000,4531.000000, 0.095248,0.904752, maf-5-some-pop,maf-5-all-pops 607 chr1 2908817 2908818 rs114578517 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 607 chr1 2908847 2908848 rs56000855 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB, 2 G,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop,maf-5-all-pops 607 chr1 2908998 2908999 rs11811220 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4598.000000,410.000000, 0.918131,0.081869, maf-5-some-pop 607 chr1 2909137 2909138 rs75895669 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4559.000000,449.000000, 0.910344,0.089657, maf-5-some-pop,maf-5-all-pops 607 chr1 2909149 2909150 rs78927729 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4559.000000,449.000000, 0.910344,0.089657, maf-5-some-pop,maf-5-all-pops 607 chr1 2909169 2909170 rs4489496 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 607 chr1 2909214 2909215 rs77530887 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop,maf-5-all-pops 607 chr1 2909249 2909250 rs16823315 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 4531.000000,477.000000, 0.904752,0.095248, maf-5-some-pop,maf-5-all-pops 607 chr1 2909286 2909287 rs4298674 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop,maf-5-all-pops 607 chr1 2909305 2909306 rs4314830 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM, 2 C,T, 83.000000,4925.000000, 0.016573,0.983427, 607 chr1 2909370 2909371 rs17391750 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 607 chr1 2909563 2909564 rs56774157 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,JMKIDD_LAB, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 607 chr1 2909581 2909582 rs113121020 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, 607 chr1 2909586 2909587 rs72855013 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop,maf-5-all-pops 607 chr1 2909701 2909702 rs80062372 0 - T T A/C genomic single by-cluster,by-frequency 0.486111 0.082168 unknown exact 1 3 BGI,ENSEMBL,GMI, 2 A,C, 7.000000,5.000000, 0.583333,0.416667, 607 chr1 2909715 2909716 rs4335321 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3380.000000,1628.000000, 0.674920,0.325080, 607 chr1 2909736 2909737 rs144639744 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,T, 4532.000000,476.000000, 0.904952,0.095048, 607 chr1 2909837 2909838 rs113654429 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 478.000000,4530.000000, 0.095447,0.904553, maf-5-some-pop,maf-5-all-pops 607 chr1 2910032 2910033 rs72629455 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 468.000000,4540.000000, 0.093451,0.906550, maf-5-some-pop,maf-5-all-pops 607 chr1 2910065 2910066 rs57242196 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop,maf-5-all-pops 607 chr1 2910324 2910325 rs57720952 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3748.000000,1260.000000, 0.748403,0.251597, maf-5-some-pop,maf-5-all-pops 607 chr1 2910343 2910344 rs58538272 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3499.000000,1509.000000, 0.698682,0.301318, maf-5-some-pop,maf-5-all-pops 607 chr1 2910358 2910359 rs72855015 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 607 chr1 2910395 2910396 rs60017523 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 476.000000,4532.000000, 0.095048,0.904952, maf-5-some-pop,maf-5-all-pops 607 chr1 2910440 2910441 rs72855018 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4667.000000,341.000000, 0.931909,0.068091, maf-5-some-pop,maf-5-all-pops 607 chr1 2910740 2910741 rs112481403 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS, 2 C,T, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop,maf-5-all-pops 607 chr1 2911356 2911357 rs58445466 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1536.000000,3472.000000, 0.306709,0.693291, maf-5-some-pop,maf-5-all-pops 607 chr1 2911365 2911366 rs112878068 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,maf-5-all-pops 607 chr1 2911458 2911459 rs72855019 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 707.000000,4301.000000, 0.141174,0.858826, maf-5-some-pop 607 chr1 2911782 2911783 rs59363914 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, 607 chr1 2911894 2911895 rs72855020 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 G,T, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop,maf-5-all-pops 607 chr1 2912154 2912155 rs189401482 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 55.000000,4953.000000, 0.010982,0.989018, 607 chr1 2912155 2912156 rs12062149 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,T, 127.000000,4881.000000, 0.025359,0.974641, 607 chr1 2912199 2912200 rs12022594 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4463.000000,545.000000, 0.891174,0.108826, maf-5-some-pop 607 chr1 2912226 2912227 rs12059864 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3482.000000,1526.000000, 0.695288,0.304712, maf-5-some-pop,maf-5-all-pops 607 chr1 2912280 2912281 rs12063212 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop,maf-5-all-pops 607 chr1 2912358 2912359 rs112463401 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 607 chr1 2912359 2912360 rs111777433 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 607 chr1 2912402 2912403 rs12096919 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 336.000000,4672.000000, 0.067093,0.932907, maf-5-some-pop 607 chr1 2912580 2912581 rs12562263 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4294.000000,714.000000, 0.857428,0.142572, maf-5-some-pop,maf-5-all-pops 607 chr1 2912716 2912717 rs12562870 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 714.000000,4294.000000, 0.142572,0.857428, maf-5-some-pop,maf-5-all-pops 607 chr1 2912846 2912847 rs10909856 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1525.000000,3483.000000, 0.304513,0.695487, maf-5-some-pop,maf-5-all-pops 607 chr1 2913001 2913002 rs12401989 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1190.000000,3818.000000, 0.237620,0.762380, maf-5-some-pop,maf-5-all-pops 607 chr1 2913234 2913235 rs60435231 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 A,G, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop,maf-5-all-pops 607 chr1 2913261 2913262 rs61586184 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,G, 493.000000,4515.000000, 0.098443,0.901558, 607 chr1 2913298 2913299 rs59407673 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 C,T, 1526.000000,3482.000000, 0.304712,0.695288, maf-5-some-pop,maf-5-all-pops 607 chr1 2913479 2913480 rs72855030 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 607 chr1 2913507 2913508 rs61027565 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 493.000000,4515.000000, 0.098443,0.901558, maf-5-some-pop,maf-5-all-pops 607 chr1 2913587 2913588 rs75676252 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 472.000000,4536.000000, 0.094249,0.905751, maf-5-some-pop,maf-5-all-pops 607 chr1 2913775 2913776 rs72855031 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 607 chr1 2913895 2913896 rs74325799 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop,maf-5-all-pops 607 chr1 2913896 2913897 rs75973015 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop,maf-5-all-pops 607 chr1 2913924 2913925 rs72855032 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3469.000000,1539.000000, 0.692692,0.307308, maf-5-some-pop,maf-5-all-pops 607 chr1 2913978 2913979 rs77176380 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4515.000000,493.000000, 0.901558,0.098443, maf-5-some-pop,maf-5-all-pops 607 chr1 2914287 2914288 rs34909435 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 1124.000000,3884.000000, 0.224441,0.775559, maf-5-some-pop,maf-5-all-pops 607 chr1 2914313 2914314 rs112806898 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,G, 4688.000000,320.000000, 0.936102,0.063898, maf-5-some-pop,maf-5-all-pops 607 chr1 2914325 2914326 rs187289817 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 607 chr1 2914339 2914340 rs556998649 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4804.000000,204.000000, 0.959265,0.040735, 607 chr1 2914351 2914352 rs114654152 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4511.000000,497.000000, 0.900759,0.099241, maf-5-some-pop,maf-5-all-pops 607 chr1 2914617 2914618 rs34453862 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 3447.000000,1561.000000, 0.688299,0.311701, maf-5-some-pop,maf-5-all-pops 607 chr1 2915040 2915041 rs78881370 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 493.000000,4515.000000, 0.098443,0.901558, maf-5-some-pop,maf-5-all-pops 607 chr1 2915047 2915047 rs111341061 0 + - - -/AA/AAA genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,BUSHMAN, 3 -,AA,AAA, 4633.000000,238.000000,137.000000, 0.925120,0.047524,0.027356, 607 chr1 2915061 2915062 rs67308414 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1526.000000,3482.000000, 0.304712,0.695288, maf-5-some-pop,maf-5-all-pops 607 chr1 2915127 2915128 rs67789667 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3482.000000,1526.000000, 0.695288,0.304712, maf-5-some-pop,maf-5-all-pops 607 chr1 2915262 2915263 rs12049173 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 476.000000,4532.000000, 0.095048,0.904952, maf-5-some-pop,maf-5-all-pops 607 chr1 2915272 2915273 rs12046411 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1528.000000,3480.000000, 0.305112,0.694888, maf-5-some-pop,maf-5-all-pops 607 chr1 2915277 2915278 rs114505535 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 607 chr1 2915333 2915334 rs12023273 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 477.000000,4531.000000, 0.095248,0.904752, maf-5-some-pop,maf-5-all-pops 607 chr1 2915554 2915555 rs147494159 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 493.000000,4515.000000, 0.098443,0.901558, 607 chr1 2915561 2915562 rs12049274 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 3818.000000,1190.000000, 0.762380,0.237620, maf-5-some-pop,maf-5-all-pops 607 chr1 2915883 2915884 rs72629460 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 476.000000,4532.000000, 0.095048,0.904952, maf-5-some-pop,maf-5-all-pops 607 chr1 2916048 2916049 rs113416777 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,T, 4949.000000,59.000000, 0.988219,0.011781, 607 chr1 2916129 2916130 rs76108880 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4514.000000,494.000000, 0.901358,0.098642, maf-5-some-pop,maf-5-all-pops 607 chr1 2916136 2916137 rs12239064 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1190.000000,3818.000000, 0.237620,0.762380, maf-5-some-pop,maf-5-all-pops 607 chr1 2916159 2916160 rs12240128 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops 607 chr1 2916182 2916183 rs72855041 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4294.000000,714.000000, 0.857428,0.142572, maf-5-some-pop,maf-5-all-pops 607 chr1 2916251 2916252 rs115382929 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 607 chr1 2916344 2916345 rs67927838 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop,maf-5-all-pops 607 chr1 2916355 2916356 rs59653178 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops 607 chr1 2916457 2916458 rs67142023 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1486.000000,3522.000000, 0.296725,0.703275, maf-5-some-pop,maf-5-all-pops 607 chr1 2916470 2916471 rs72629462 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1486.000000,3522.000000, 0.296725,0.703275, maf-5-some-pop,maf-5-all-pops 607 chr1 2916643 2916644 rs58054511 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop,maf-5-all-pops 607 chr1 2916669 2916670 rs16823325 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop,maf-5-all-pops 607 chr1 2916680 2916681 rs57711454 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop,maf-5-all-pops 607 chr1 2916699 2916700 rs114128626 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 607 chr1 2916810 2916811 rs72855044 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop,maf-5-all-pops 607 chr1 2917085 2917086 rs112479268 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 289.000000,4719.000000, 0.057708,0.942292, maf-5-some-pop,maf-5-all-pops 607 chr1 2917135 2917136 rs10909857 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1478.000000,3530.000000, 0.295128,0.704872, maf-5-some-pop,maf-5-all-pops 607 chr1 2917173 2917173 rs35240906 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,ABI, 2 -,A, 1481.000000,3527.000000, 0.295727,0.704273, 607 chr1 2917334 2917334 rs35693840 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,ABI,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 3857.000000,1151.000000, 0.770168,0.229832, 607 chr1 2917359 2917360 rs12059499 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 607 chr1 2917366 2917367 rs58475401 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 607 chr1 2917372 2917373 rs12059501 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop,maf-5-all-pops 607 chr1 2917376 2917377 rs12025260 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1356.000000,3652.000000, 0.270767,0.729233, maf-5-some-pop,maf-5-all-pops 607 chr1 2917459 2917460 rs10797374 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop,maf-5-all-pops 607 chr1 2917462 2917463 rs10797375 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop,maf-5-all-pops 607 chr1 2917471 2917472 rs10797376 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3682.000000,1326.000000, 0.735224,0.264776, maf-5-some-pop,maf-5-all-pops 607 chr1 2917521 2917522 rs72855046 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 607 chr1 2917564 2917565 rs17389607 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PERLEGEN, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop,maf-5-all-pops 607 chr1 2917697 2917698 rs10909859 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 4529.000000,479.000000, 0.904353,0.095647, maf-5-some-pop,maf-5-all-pops 607 chr1 2917759 2917760 rs12059664 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,C, 290.000000,4718.000000, 0.057907,0.942093, maf-5-some-pop,maf-5-all-pops 607 chr1 2918020 2918021 rs56008028 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,PJP,SSMP,TISHKOFF, 2 A,G, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop,maf-5-all-pops 607 chr1 2918040 2918041 rs72855050 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 607 chr1 2918098 2918099 rs77993329 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 386.000000,4622.000000, 0.077077,0.922923, maf-5-some-pop,maf-5-all-pops 607 chr1 2918184 2918185 rs12562237 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3530.000000,1478.000000, 0.704872,0.295128, maf-5-some-pop,maf-5-all-pops 607 chr1 2918194 2918195 rs3924055 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1483.000000,3525.000000, 0.296126,0.703874, maf-5-some-pop,maf-5-all-pops 607 chr1 2918228 2918229 rs16823330 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 4530.000000,478.000000, 0.904553,0.095447, maf-5-some-pop,maf-5-all-pops 607 chr1 2918373 2918374 rs78783978 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 496.000000,4512.000000, 0.099041,0.900958, maf-5-some-pop,maf-5-all-pops 607 chr1 2918510 2918511 rs66758088 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 986.000000,4022.000000, 0.196885,0.803115, maf-5-some-pop,maf-5-all-pops 607 chr1 2918542 2918543 rs72855055 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop,maf-5-all-pops 607 chr1 2918571 2918572 rs112941336 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops 607 chr1 2918594 2918595 rs138742169 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4608.000000,400.000000, 0.920128,0.079872, 607 chr1 2918628 2918629 rs7413322 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,SC_JCM,SSAHASNP,SSMP, 2 A,G, 3566.000000,1442.000000, 0.712061,0.287939, 607 chr1 2918641 2918642 rs115452583 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop,maf-5-all-pops 607 chr1 2918642 2918643 rs150339141 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 486.000000,4522.000000, 0.097045,0.902955, 607 chr1 2918672 2918673 rs116432453 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 986.000000,4022.000000, 0.196885,0.803115, maf-5-some-pop,maf-5-all-pops 607 chr1 2918724 2918725 rs147163760 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4948.000000,60.000000, 0.988019,0.011981, 607 chr1 2918752 2918753 rs72855056 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop,maf-5-all-pops 607 chr1 2918783 2918784 rs66464555 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops 607 chr1 2918789 2918790 rs67014609 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops 607 chr1 2918807 2918808 rs112900091 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 607 chr1 2918810 2918811 rs67778026 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1478.000000,3530.000000, 0.295128,0.704872, maf-5-some-pop,maf-5-all-pops 607 chr1 2918830 2918831 rs7524813 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3528.000000,1480.000000, 0.704473,0.295527, maf-5-some-pop,maf-5-all-pops 607 chr1 2918906 2918907 rs72629465 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4530.000000,478.000000, 0.904553,0.095447, maf-5-some-pop,maf-5-all-pops 607 chr1 2918937 2918938 rs7520336 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3528.000000,1480.000000, 0.704473,0.295527, maf-5-some-pop,maf-5-all-pops 607 chr1 2919015 2919016 rs59038490 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,maf-5-all-pops 607 chr1 2919122 2919123 rs6424064 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1052.000000,3956.000000, 0.210064,0.789936, maf-5-some-pop 607 chr1 2919149 2919150 rs6424065 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1052.000000,3956.000000, 0.210064,0.789936, maf-5-some-pop 607 chr1 2919174 2919175 rs10909860 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop 607 chr1 2919221 2919222 rs6424066 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 887.000000,4121.000000, 0.177117,0.822883, maf-5-some-pop 607 chr1 2919246 2919247 rs79302734 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 542.000000,4466.000000, 0.108227,0.891773, maf-5-some-pop,maf-5-all-pops 607 chr1 2919468 2919469 rs6424067 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3449.000000,1559.000000, 0.688698,0.311302, maf-5-some-pop,maf-5-all-pops 607 chr1 2919487 2919488 rs112882596 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 607 chr1 2919601 2919602 rs77863129 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 495.000000,4513.000000, 0.098842,0.901158, maf-5-some-pop,maf-5-all-pops 607 chr1 2919629 2919630 rs12025062 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3693.000000,1315.000000, 0.737420,0.262580, maf-5-some-pop,maf-5-all-pops 607 chr1 2919935 2919936 rs115223550 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 607 chr1 2919941 2919942 rs12022429 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 743.000000,4265.000000, 0.148363,0.851637, maf-5-some-pop 607 chr1 2919962 2919963 rs72855063 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4170.000000,838.000000, 0.832668,0.167332, maf-5-some-pop,maf-5-all-pops 607 chr1 2920018 2920019 rs12025167 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4330.000000,678.000000, 0.864617,0.135383, maf-5-some-pop,maf-5-all-pops 607 chr1 2920036 2920037 rs57627214 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 941.000000,4067.000000, 0.187899,0.812101, maf-5-some-pop,maf-5-all-pops 607 chr1 2920041 2920042 rs12022456 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 645.000000,4363.000000, 0.128794,0.871206, maf-5-some-pop,maf-5-all-pops 607 chr1 2920137 2920138 rs76283581 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop,maf-5-all-pops 607 chr1 2920157 2920158 rs16823332 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4271.000000,737.000000, 0.852835,0.147165, maf-5-some-pop,maf-5-all-pops 607 chr1 2920231 2920232 rs112851517 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4726.000000,282.000000, 0.943690,0.056310, maf-5-some-pop,maf-5-all-pops 607 chr1 2920350 2920351 rs74050026 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4738.000000,270.000000, 0.946086,0.053914, maf-5-some-pop,maf-5-all-pops 607 chr1 2920370 2920371 rs148890497 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 607 chr1 2920374 2920375 rs75769034 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 529.000000,4479.000000, 0.105631,0.894369, maf-5-some-pop,maf-5-all-pops 607 chr1 2920379 2920380 rs78816715 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 G,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 607 chr1 2920430 2920431 rs12066017 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3376.000000,1632.000000, 0.674121,0.325879, maf-5-some-pop,maf-5-all-pops 607 chr1 2920462 2920463 rs113105597 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 607 chr1 2920467 2920468 rs58685876 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 4209.000000,799.000000, 0.840455,0.159545, maf-5-some-pop,maf-5-all-pops 607 chr1 2920474 2920475 rs12063935 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 607 chr1 2920665 2920666 rs10909861 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 G,T, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop,maf-5-all-pops 607 chr1 2920732 2920733 rs72855067 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,C, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 607 chr1 2921081 2921082 rs74683024 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop,maf-5-all-pops 607 chr1 2921281 2921282 rs72629470 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 467.000000,4541.000000, 0.093251,0.906749, maf-5-some-pop,maf-5-all-pops 607 chr1 2921333 2921334 rs151048557 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 607 chr1 2921416 2921417 rs72629471 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4542.000000,466.000000, 0.906949,0.093051, maf-5-some-pop,maf-5-all-pops 607 chr1 2921570 2921571 rs116329948 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 607 chr1 2921692 2921693 rs72855068 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop,maf-5-all-pops 607 chr1 2921859 2921860 rs16823335 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop 607 chr1 2921908 2921909 rs6683516 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop 607 chr1 2922019 2922020 rs6680636 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4184.000000,824.000000, 0.835463,0.164537, maf-5-some-pop 607 chr1 2922326 2922327 rs12028094 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4437.000000,571.000000, 0.885982,0.114018, maf-5-some-pop,maf-5-all-pops 607 chr1 2922743 2922744 rs10797377 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 695.000000,4313.000000, 0.138778,0.861222, maf-5-some-pop,maf-5-all-pops 607 chr1 2923093 2923094 rs12563575 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4508.000000,500.000000, 0.900160,0.099840, maf-5-some-pop,maf-5-all-pops 607 chr1 2923200 2923201 rs72629473 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 607 chr1 2923383 2923384 rs12063869 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 797.000000,4211.000000, 0.159145,0.840855, maf-5-some-pop,maf-5-all-pops 607 chr1 2923399 2923400 rs12097493 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 193.000000,4815.000000, 0.038538,0.961462, maf-5-some-pop,maf-5-all-pops 607 chr1 2923562 2923563 rs55682251 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,maf-5-all-pops 607 chr1 2923778 2923779 rs6664212 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, 607 chr1 2923779 2923781 rs140470388 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,AG, 528.000000,4480.000000, 0.105431,0.894569, 607 chr1 2924665 2924666 rs12562637 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4479.000000,529.000000, 0.894369,0.105631, maf-5-some-pop 607 chr1 2925389 2925390 rs10399751 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop 607 chr1 2925421 2925422 rs946175 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3314.000000,1694.000000, 0.661741,0.338259, maf-5-some-pop,maf-5-all-pops 607 chr1 2925496 2925497 rs946176 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TSC-CSHL, 2 C,T, 4542.000000,466.000000, 0.906949,0.093051, maf-5-some-pop,maf-5-all-pops 607 chr1 2925661 2925662 rs61763644 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, 607 chr1 2925732 2925733 rs57542223 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 607 chr1 2926167 2926168 rs114968596 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 607 chr1 2926536 2926537 rs2027263 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,maf-5-all-pops 607 chr1 2926642 2926643 rs72855076 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 607 chr1 2926784 2926785 rs111412502 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4435.000000,573.000000, 0.885583,0.114417, 607 chr1 2926972 2926973 rs11802804 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 G,T, 852.000000,4156.000000, 0.170128,0.829872, 607 chr1 2927001 2927001 rs565155800 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,EVA-GONL, 2 -,T, 4567.000000,441.000000, 0.911941,0.088059, 607 chr1 2927010 2927011 rs111668563 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 G,T, 460.000000,4548.000000, 0.091853,0.908147, 607 chr1 2927013 2927014 rs112539394 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 A,G, 565.000000,4443.000000, 0.112819,0.887181, 607 chr1 2927174 2927175 rs12028439 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4211.000000,797.000000, 0.840855,0.159145, 607 chr1 2927193 2927194 rs144560609 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 498.000000,4510.000000, 0.099441,0.900559, 607 chr1 2927253 2927254 rs12024879 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 797.000000,4211.000000, 0.159145,0.840855, maf-5-some-pop,maf-5-all-pops 607 chr1 2927470 2927471 rs12027818 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4250.000000,758.000000, 0.848642,0.151358, 607 chr1 2927677 2927678 rs12027883 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4542.000000,466.000000, 0.906949,0.093051, maf-5-some-pop,maf-5-all-pops 607 chr1 2928420 2928421 rs7534897 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4210.000000,798.000000, 0.840655,0.159345, maf-5-some-pop 607 chr1 2928518 2928519 rs115417840 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 607 chr1 2928544 2928545 rs72855080 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 607 chr1 2928582 2928582 rs146651956 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,C, 4813.000000,195.000000, 0.961062,0.038938, 607 chr1 2928920 2928921 rs74520658 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 568.000000,4440.000000, 0.113419,0.886581, maf-5-some-pop,maf-5-all-pops 607 chr1 2928975 2928976 rs6681651 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3656.000000,1352.000000, 0.730032,0.269968, maf-5-some-pop,maf-5-all-pops 607 chr1 2929441 2929442 rs150112939 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 64.000000,4944.000000, 0.012780,0.987220, 607 chr1 2929665 2929666 rs118044211 0 + C C C/G genomic single by-frequency,by-1000genomes 0.000918 0.0214 unknown exact 1 1 1000GENOMES, 2 C,G, 118.000000,2.000000, 0.983333,0.016667, 607 chr1 2930578 2930579 rs116647760 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop,maf-5-all-pops 607 chr1 2931031 2931032 rs72855082 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 320.000000,4688.000000, 0.063898,0.936102, maf-5-some-pop,maf-5-all-pops 607 chr1 2931190 2931191 rs28700872 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,T, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop,maf-5-all-pops 607 chr1 2931239 2931239 rs145334113 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,A, 4922.000000,86.000000, 0.982827,0.017173, 607 chr1 2931326 2931327 rs6691208 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1591.000000,3417.000000, 0.317692,0.682308, maf-5-some-pop,maf-5-all-pops 607 chr1 2931439 2931440 rs4486390 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 C,T, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop,maf-5-all-pops 607 chr1 2931648 2931649 rs6696290 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4463.000000,545.000000, 0.891174,0.108826, maf-5-some-pop,maf-5-all-pops 607 chr1 2932115 2932116 rs7536203 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 607 chr1 2932146 2932147 rs59869348 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1452.000000,3556.000000, 0.289936,0.710064, maf-5-some-pop,maf-5-all-pops 607 chr1 2932215 2932216 rs59041920 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3659.000000,1349.000000, 0.730631,0.269369, maf-5-some-pop,maf-5-all-pops 607 chr1 2932421 2932422 rs113419070 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 G,T, 241.000000,4767.000000, 0.048123,0.951877, maf-5-some-pop,maf-5-all-pops 607 chr1 2932428 2932429 rs113100839 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF, 2 A,G, 193.000000,4815.000000, 0.038538,0.961462, maf-5-some-pop,maf-5-all-pops 607 chr1 2932498 2932499 rs60366070 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3905.000000,1103.000000, 0.779752,0.220248, maf-5-some-pop,maf-5-all-pops 607 chr1 2932532 2932533 rs56401121 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1099.000000,3909.000000, 0.219449,0.780551, maf-5-some-pop,maf-5-all-pops 607 chr1 2932559 2932560 rs72629480 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,maf-5-all-pops 607 chr1 2932618 2932619 rs58317195 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3910.000000,1098.000000, 0.780751,0.219249, maf-5-some-pop 607 chr1 2932640 2932641 rs58840547 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop,maf-5-all-pops 607 chr1 2932839 2932840 rs115470029 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 97.000000,4911.000000, 0.019369,0.980631, 607 chr1 2933157 2933158 rs550615335 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, 607 chr1 2933333 2933334 rs540018725 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 72.000000,4936.000000, 0.014377,0.985623, 607 chr1 2933374 2933375 rs6680039 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3914.000000,1094.000000, 0.781550,0.218450, maf-5-some-pop,maf-5-all-pops 607 chr1 2933389 2933390 rs6670326 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCM_SSAHASNP,BGI,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 539.000000,4469.000000, 0.107628,0.892372, maf-5-some-pop,maf-5-all-pops 607 chr1 2933436 2933437 rs111653678 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 607 chr1 2933563 2933564 rs72855092 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 607 chr1 2933574 2933575 rs72855093 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop,maf-5-all-pops 607 chr1 2933732 2933733 rs6670704 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 922.000000,4086.000000, 0.184105,0.815895, maf-5-some-pop 607 chr1 2933744 2933745 rs114412925 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 607 chr1 2933752 2933753 rs6685160 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4080.000000,928.000000, 0.814696,0.185304, maf-5-some-pop,maf-5-all-pops 607 chr1 2933812 2933813 rs72855095 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,C, 183.000000,4825.000000, 0.036541,0.963458, 607 chr1 2933852 2933853 rs111931079 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB, 2 A,C, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop,maf-5-all-pops 607 chr1 2933901 2933902 rs6680573 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3364.000000,1644.000000, 0.671725,0.328275, maf-5-some-pop,maf-5-all-pops 607 chr1 2933927 2933928 rs72855096 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 607 chr1 2934134 2934137 rs112075092 0 + AGG AGG -/AGG genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AGG, 867.000000,4141.000000, 0.173123,0.826877, 607 chr1 2934734 2934735 rs56200661 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV, 2 C,T, 4858.000000,150.000000, 0.970048,0.029952, maf-5-some-pop,maf-5-all-pops 607 chr1 2934845 2934846 rs72629481 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 607 chr1 2935227 2935228 rs16823355 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop 607 chr1 2935286 2935287 rs58307518 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,JMKIDD_LAB, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 607 chr1 2935336 2935337 rs72855098 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,maf-5-all-pops 607 chr1 2935353 2935354 rs59329403 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 607 chr1 2935380 2935381 rs116082654 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 607 chr1 2935446 2935447 rs74050035 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,G, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop,maf-5-all-pops 607 chr1 2935753 2935754 rs16823357 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 799.000000,4209.000000, 0.159545,0.840455, maf-5-some-pop 607 chr1 2935778 2935779 rs147070241 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 607 chr1 2935808 2935809 rs199524833 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,LUNTER, 2 -,G, 97.000000,4911.000000, 0.019369,0.980631, 607 chr1 2935810 2935811 rs190902926 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 G,T, 4936.000000,72.000000, 0.985623,0.014377, 607 chr1 2936385 2936386 rs12564456 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3854.000000,1154.000000, 0.769569,0.230431, maf-5-some-pop,maf-5-all-pops 607 chr1 2936479 2936480 rs10752732 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop 607 chr1 2936677 2936678 rs72629483 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 607 chr1 2936685 2936685 rs58065168 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 4408.000000,600.000000, 0.880192,0.119808, 607 chr1 2936745 2936746 rs55949537 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 3889.000000,1119.000000, 0.776558,0.223442, maf-5-some-pop,maf-5-all-pops 607 chr1 2936753 2936754 rs55784203 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3889.000000,1119.000000, 0.776558,0.223442, maf-5-some-pop,maf-5-all-pops 607 chr1 2936788 2936789 rs16823364 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,PERLEGEN, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 607 chr1 2936802 2936803 rs56091202 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3928.000000,1080.000000, 0.784345,0.215655, maf-5-some-pop,maf-5-all-pops 607 chr1 2936814 2936815 rs10909862 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3267.000000,1741.000000, 0.652356,0.347644, maf-5-some-pop,maf-5-all-pops 607 chr1 2936869 2936870 rs10492936 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 507.000000,4501.000000, 0.101238,0.898762, maf-5-some-pop 607 chr1 2937030 2937031 rs67758087 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3895.000000,1113.000000, 0.777756,0.222244, maf-5-some-pop,maf-5-all-pops 607 chr1 2937138 2937139 rs56772150 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4526.000000,482.000000, 0.903754,0.096246, maf-5-some-pop,maf-5-all-pops 607 chr1 2937227 2937228 rs61266721 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop 607 chr1 2937549 2937550 rs12033927 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 4443.000000,565.000000, 0.887181,0.112819, maf-5-some-pop 607 chr1 2937550 2937551 rs12034794 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1079.000000,3929.000000, 0.215455,0.784545, maf-5-some-pop,maf-5-all-pops 607 chr1 2938264 2938265 rs4576609 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 21 1000GENOMES,ABI,APPLERA_GI,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 3998.000000,1010.000000, 0.798323,0.201677, maf-5-some-pop,maf-5-all-pops 607 chr1 2938568 2938569 rs35806103 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop 607 chr1 2938837 2938838 rs61745280 0 + G G A/G genomic single unknown 0.02597 0.110952 coding-synon exact 1 1 CORNELL, 2 A,G, 1.000000,75.000000, 0.013158,0.986842, 607 chr1 2938886 2938887 rs61745278 0 + G G A/G genomic single unknown 0 0 missense exact 1 10 1000GENOMES,BUSHMAN,CORNELL,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop 607 chr1 2938923 2938924 rs72629486 0 + T T G/T genomic single unknown 0 0 missense exact 1 9 1000GENOMES,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 G,T, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop 607 chr1 2940011 2940012 rs55873718 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3961.000000,1047.000000, 0.790935,0.209065, maf-5-some-pop,maf-5-all-pops 607 chr1 2940336 2940337 rs72856407 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,G, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 607 chr1 2940415 2940416 rs12077575 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SC_SNP,TISHKOFF, 2 C,T, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop,maf-5-all-pops 607 chr1 2940416 2940418 rs371431621 0 + GT GT -/GT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,GT, 113.000000,4895.000000, 0.022564,0.977436, 607 chr1 2940615 2940616 rs72856408 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4562.000000,446.000000, 0.910942,0.089057, maf-5-some-pop,maf-5-all-pops 607 chr1 2940997 2940998 rs56176404 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 A,G, 4452.000000,556.000000, 0.888978,0.111022, maf-5-some-pop,maf-5-all-pops 607 chr1 2941424 2941425 rs61206069 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,TISHKOFF, 2 A,G, 287.000000,4721.000000, 0.057308,0.942692, maf-5-some-pop,maf-5-all-pops 607 chr1 2941724 2941736 rs141160597 0 + TGGTGTTTTCAT TGGTGTTTTCAT -/TGGTGTTTTCAT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,LUNTER, 2 -,TGGTGTTTTCAT, 557.000000,4451.000000, 0.111222,0.888778, 607 chr1 2941736 2941737 rs12566421 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop 607 chr1 2942083 2942084 rs113962835 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop 607 chr1 2942464 2942465 rs75787210 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,MPI_MOLGEN,SSMP, 2 A,G, 3879.000000,1129.000000, 0.774561,0.225439, 607 chr1 2942499 2942499 rs141913407 0 + - - -/GA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BL,GMI,WARNICH_LAB, 2 -,GA, 2842.000000,2166.000000, 0.567492,0.432508, 607 chr1 2942599 2942602 rs369463675 0 + TGG TGG -/TGG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,BILGI_BIOE, 2 -,TGG, 3119.000000,1889.000000, 0.622804,0.377196, 607 chr1 2943025 2943026 rs76547627 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 4710.000000,298.000000, 0.940495,0.059505, maf-5-some-pop 607 chr1 2943182 2943183 rs7412983 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,C, 3879.000000,1129.000000, 0.774561,0.225439, maf-5-some-pop,maf-5-all-pops 607 chr1 2943305 2943306 rs113165799 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 607 chr1 2943397 2943398 rs58265521 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1129.000000,3879.000000, 0.225439,0.774561, maf-5-some-pop,maf-5-all-pops 607 chr1 2943536 2943537 rs117759489 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 128.000000,4880.000000, 0.025559,0.974441, 607 chr1 2943545 2943546 rs116305888 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 607 chr1 2943667 2943668 rs60287244 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3879.000000,1129.000000, 0.774561,0.225439, maf-5-some-pop,maf-5-all-pops 607 chr1 2943907 2943908 rs12033336 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop,maf-5-all-pops 607 chr1 2944037 2944038 rs12034766 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3882.000000,1126.000000, 0.775160,0.224840, maf-5-some-pop,maf-5-all-pops 607 chr1 2944085 2944086 rs12033401 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4453.000000,555.000000, 0.889177,0.110823, maf-5-some-pop,maf-5-all-pops 607 chr1 2944670 2944671 rs57893585 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 1128.000000,3880.000000, 0.225240,0.774760, maf-5-some-pop,maf-5-all-pops 607 chr1 2945180 2945181 rs113769694 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 607 chr1 2945239 2945240 rs74050046 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 607 chr1 2945746 2945747 rs112606762 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 607 chr1 2945750 2945751 rs56151597 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,HGSV, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 607 chr1 2945939 2945940 rs6693975 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 A,G, 551.000000,4457.000000, 0.110024,0.889976, 607 chr1 2945975 2945976 rs6693982 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 1115.000000,3893.000000, 0.222644,0.777356, 607 chr1 2946725 2946726 rs12038530 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops 607 chr1 2947017 2947018 rs72856413 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,C, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 607 chr1 2947124 2947125 rs57339124 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 607 chr1 2947418 2947419 rs111235033 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 429.000000,4579.000000, 0.085663,0.914337, maf-5-some-pop,maf-5-all-pops 607 chr1 2947466 2947467 rs74735251 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4711.000000,297.000000, 0.940695,0.059305, maf-5-some-pop,maf-5-all-pops 607 chr1 2947755 2947756 rs12037307 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 556.000000,4452.000000, 0.111022,0.888978, maf-5-some-pop,maf-5-all-pops 607 chr1 2947908 2947909 rs12039548 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops 607 chr1 2948019 2948020 rs12034573 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1113.000000,3895.000000, 0.222244,0.777756, maf-5-some-pop,maf-5-all-pops 607 chr1 2948177 2948178 rs10909864 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1425.000000,3583.000000, 0.284545,0.715455, maf-5-some-pop,maf-5-all-pops 607 chr1 2948218 2948219 rs72856415 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop,maf-5-all-pops 607 chr1 2948380 2948380 rs111605756 0 + - - -/CCAAG genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,CCAAG, 3973.000000,1035.000000, 0.793331,0.206669, 607 chr1 2948531 2948532 rs147329851 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 607 chr1 2948853 2948854 rs12077664 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop,maf-5-all-pops 607 chr1 2949263 2949264 rs115623298 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 607 chr1 2949351 2949352 rs58311021 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,SSMP,TISHKOFF, 2 A,G, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop,maf-5-all-pops 607 chr1 2949354 2949355 rs12039132 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4000.000000,1008.000000, 0.798722,0.201278, maf-5-some-pop,maf-5-all-pops 607 chr1 2949606 2949607 rs7514166 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 607 chr1 2949644 2949644 rs199534554 0 + - - -/GAGCTGCGA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,GAGCTGCGA, 4883.000000,125.000000, 0.975040,0.024960, 607 chr1 2949650 2949651 rs111650484 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop,maf-5-all-pops 607 chr1 2949735 2949736 rs7527711 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 607 chr1 2949960 2949961 rs35035410 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BILGI_BIOE,BL,GMI,LUNTER,PJP,SSMP, 2 -,C, 1631.000000,3377.000000, 0.325679,0.674321, 607 chr1 2950066 2950067 rs34408665 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop,maf-5-all-pops 607 chr1 2950093 2950094 rs58052947 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1439.000000,3569.000000, 0.287340,0.712660, maf-5-some-pop,maf-5-all-pops 607 chr1 2950236 2950237 rs56398543 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 607 chr1 2950333 2950334 rs6661908 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 607 chr1 2950593 2950594 rs6679678 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 607 chr1 2950742 2950742 rs562534906 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,EVA-GONL, 2 -,A, 4012.000000,996.000000, 0.801118,0.198882, 607 chr1 2950871 2950872 rs12042403 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1011.000000,3997.000000, 0.201877,0.798123, maf-5-some-pop,maf-5-all-pops 607 chr1 2950885 2950886 rs12041583 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4017.000000,991.000000, 0.802117,0.197883, maf-5-some-pop,maf-5-all-pops 607 chr1 2951033 2951034 rs12041634 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4017.000000,991.000000, 0.802117,0.197883, maf-5-some-pop,maf-5-all-pops 607 chr1 2951040 2951041 rs12040299 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3987.000000,1021.000000, 0.796126,0.203874, maf-5-some-pop,maf-5-all-pops 607 chr1 2951348 2951349 rs72629494 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 993.000000,4015.000000, 0.198283,0.801717, maf-5-some-pop,maf-5-all-pops 607 chr1 2951510 2951511 rs12408197 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4015.000000,993.000000, 0.801717,0.198283, maf-5-some-pop,maf-5-all-pops 607 chr1 2951767 2951768 rs56939499 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 A,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop,maf-5-all-pops 607 chr1 2951805 2951806 rs67025412 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1012.000000,3996.000000, 0.202077,0.797923, maf-5-some-pop,maf-5-all-pops 607 chr1 2951988 2951989 rs67630839 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4018.000000,990.000000, 0.802316,0.197684, maf-5-some-pop,maf-5-all-pops 607 chr1 2952112 2952112 rs567199797 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,G, 4019.000000,989.000000, 0.802516,0.197484, 607 chr1 2952403 2952404 rs78841195 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, 607 chr1 2952822 2952823 rs9660819 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4018.000000,990.000000, 0.802316,0.197684, maf-5-some-pop,maf-5-all-pops 607 chr1 2952839 2952840 rs9661525 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 992.000000,4016.000000, 0.198083,0.801917, maf-5-some-pop,maf-5-all-pops 607 chr1 2952992 2952993 rs116812955 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 607 chr1 2953028 2953029 rs114623474 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops 607 chr1 2953142 2953143 rs72629496 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB, 2 A,G, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop,maf-5-all-pops 607 chr1 2953401 2953402 rs113145774 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 607 chr1 2953626 2953627 rs2981860 0 - T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,SC_JCM,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 607 chr1 2953745 2953745 rs5772091 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,C, 4004.000000,1004.000000, 0.799521,0.200479, 607 chr1 2953832 2953833 rs16823392 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4019.000000,989.000000, 0.802516,0.197484, maf-5-some-pop,maf-5-all-pops 607 chr1 2953886 2953887 rs115137052 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 607 chr1 2954016 2954017 rs116556794 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 607 chr1 2954030 2954031 rs74048148 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4013.000000,995.000000, 0.801318,0.198682, maf-5-some-pop,maf-5-all-pops 607 chr1 2954046 2954047 rs77415878 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,G, 3995.000000,1013.000000, 0.797724,0.202276, maf-5-some-pop,maf-5-all-pops 607 chr1 2954050 2954051 rs113272167 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4014.000000,994.000000, 0.801518,0.198482, maf-5-some-pop,maf-5-all-pops 607 chr1 2954054 2954055 rs112690788 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4014.000000,994.000000, 0.801518,0.198482, maf-5-some-pop,maf-5-all-pops 607 chr1 2954060 2954061 rs72856433 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 1432.000000,3576.000000, 0.285942,0.714058, maf-5-some-pop,maf-5-all-pops 607 chr1 2954122 2954123 rs72629497 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 988.000000,4020.000000, 0.197284,0.802716, maf-5-some-pop,maf-5-all-pops 607 chr1 2954164 2954165 rs67872056 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4020.000000,988.000000, 0.802716,0.197284, maf-5-some-pop,maf-5-all-pops 607 chr1 2954202 2954203 rs72629498 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 C,T, 4454.000000,554.000000, 0.889377,0.110623, maf-5-some-pop,maf-5-all-pops 607 chr1 2954207 2954208 rs67289919 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 988.000000,4020.000000, 0.197284,0.802716, maf-5-some-pop,maf-5-all-pops 607 chr1 2954229 2954230 rs67919793 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 988.000000,4020.000000, 0.197284,0.802716, maf-5-some-pop,maf-5-all-pops 607 chr1 2954296 2954297 rs67908307 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 988.000000,4020.000000, 0.197284,0.802716, maf-5-some-pop,maf-5-all-pops 607 chr1 2954378 2954379 rs201056490 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 789.000000,4219.000000, 0.157548,0.842452, 607 chr1 2955157 2955158 rs12036378 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 987.000000,4021.000000, 0.197085,0.802915, maf-5-some-pop,maf-5-all-pops 607 chr1 2955244 2955245 rs55863899 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB, 2 C,G, 4761.000000,247.000000, 0.950679,0.049321, maf-5-some-pop,maf-5-all-pops 607 chr1 2955530 2955531 rs114890220 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 607 chr1 2955545 2955546 rs74048152 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,SSMP,TISHKOFF, 2 G,T, 4577.000000,431.000000, 0.913938,0.086062, maf-5-some-pop,maf-5-all-pops 607 chr1 2955702 2955703 rs116486521 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 607 chr1 2955741 2955742 rs72856437 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4572.000000,436.000000, 0.912939,0.087061, maf-5-some-pop,maf-5-all-pops 607 chr1 2955775 2955776 rs114723244 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 607 chr1 2955928 2955929 rs75644121 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop 607 chr1 2955929 2955930 rs66693767 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 4025.000000,983.000000, 0.803714,0.196286, maf-5-some-pop,maf-5-all-pops 607 chr1 2955987 2955988 rs114661258 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 607 chr1 2956162 2956163 rs10909865 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4024.000000,984.000000, 0.803514,0.196486, maf-5-some-pop,maf-5-all-pops 607 chr1 2956581 2956582 rs72856440 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4011.000000,997.000000, 0.800919,0.199081, maf-5-some-pop,maf-5-all-pops 607 chr1 2956699 2956699 rs141627543 0 + - - -/TG genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,TISHKOFF,WARNICH_LAB, 2 -,TG, 4011.000000,997.000000, 0.800919,0.199081, 607 chr1 2956809 2956810 rs72856443 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 607 chr1 2956990 2956991 rs113884577 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 607 chr1 2956998 2956999 rs12567620 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 978.000000,4030.000000, 0.195288,0.804712, maf-5-some-pop,maf-5-all-pops 607 chr1 2957132 2957133 rs117711054 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4912.000000,96.000000, 0.980831,0.019169, 607 chr1 2957403 2957404 rs12566487 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop,maf-5-all-pops 607 chr1 2957599 2957600 rs12409277 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 997.000000,4011.000000, 0.199081,0.800919, maf-5-some-pop,maf-5-all-pops 607 chr1 2957924 2957925 rs59677290 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop 607 chr1 2958626 2958627 rs145152549 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 607 chr1 2958707 2958708 rs12044162 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4011.000000,997.000000, 0.800919,0.199081, 607 chr1 2958855 2958856 rs12724379 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP, 2 A,C, 73.000000,4935.000000, 0.014577,0.985423, 607 chr1 2959009 2959010 rs72856451 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,T, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop,maf-5-all-pops 607 chr1 2959185 2959185 rs535870152 0 + - - -/ACCACCGCACCCGGCACGT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,ACCACCGCACCCGGCACGT, 4764.000000,244.000000, 0.951278,0.048722, 607 chr1 2959227 2959228 rs76311266 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 228.000000,12.000000, 0.950000,0.050000, maf-5-some-pop 607 chr1 2959258 2959259 rs2993511 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 607 chr1 2959265 2959266 rs6684233 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,SSMP, 2 A,C, 426.000000,4582.000000, 0.085064,0.914936, maf-5-some-pop,maf-5-all-pops 607 chr1 2959452 2959453 rs6689175 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 607 chr1 2959609 2959610 rs6692292 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1261.000000,3747.000000, 0.251797,0.748203, maf-5-some-pop,maf-5-all-pops 607 chr1 2960020 2960021 rs56213325 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 607 chr1 2960191 2960192 rs12045368 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SC_SNP, 2 A,G, 4454.000000,554.000000, 0.889377,0.110623, 607 chr1 2960196 2960196 rs142366491 0 + - - -/CAAACAAACAAACAAACAAACA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,GMI,LUNTER,TISHKOFF, 2 -,CAAACAAACAAACAAACAAACA, 3753.000000,1255.000000, 0.749401,0.250599, 607 chr1 2960371 2960372 rs10909866 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4013.000000,995.000000, 0.801318,0.198682, maf-5-some-pop,maf-5-all-pops 607 chr1 2960607 2960608 rs12046233 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 4455.000000,553.000000, 0.889577,0.110423, maf-5-some-pop,maf-5-all-pops 607 chr1 2960677 2960678 rs117167066 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,C, 4939.000000,69.000000, 0.986222,0.013778, 607 chr1 2960789 2960790 rs12044848 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4026.000000,982.000000, 0.803914,0.196086, maf-5-some-pop,maf-5-all-pops 607 chr1 2960829 2960830 rs60031908 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 987.000000,4021.000000, 0.197085,0.802915, 607 chr1 2960932 2960933 rs113321104 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 607 chr1 2961022 2961023 rs72630906 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB, 2 A,C, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop,maf-5-all-pops 607 chr1 2961234 2961235 rs72856459 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop,maf-5-all-pops 607 chr1 2961369 2961370 rs56088946 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB, 2 C,T, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop,maf-5-all-pops 607 chr1 2961401 2961402 rs10909867 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 4025.000000,983.000000, 0.803714,0.196286, maf-5-some-pop,maf-5-all-pops 607 chr1 2961541 2961542 rs12568942 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop 607 chr1 2961876 2961877 rs12410455 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop,maf-5-all-pops 607 chr1 2962098 2962099 rs79823923 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop 607 chr1 2962173 2962174 rs12093001 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop,maf-5-all-pops 607 chr1 2962206 2962207 rs10909868 0 + A A A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop,maf-5-all-pops 607 chr1 2962224 2962225 rs12048975 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 554.000000,4454.000000, 0.110623,0.889377, maf-5-some-pop,maf-5-all-pops 607 chr1 2963014 2963015 rs12094337 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SC_SNP, 2 A,C, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop,maf-5-all-pops 607 chr1 2963059 2963060 rs12096406 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP, 2 A,G, 4742.000000,266.000000, 0.946885,0.053115, maf-5-some-pop,maf-5-all-pops 607 chr1 2963248 2963249 rs116014977 0 + G G A/G genomic single by-frequency,by-1000genomes 0.000918 0.0214 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 2.000000,116.000000, 0.016949,0.983051, 607 chr1 2963492 2963493 rs7339938 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1424.000000,3584.000000, 0.284345,0.715655, maf-5-some-pop,maf-5-all-pops 607 chr1 2963530 2963531 rs12091189 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SC_SNP, 2 C,T, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 607 chr1 2963932 2963933 rs28546253 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop,maf-5-all-pops 607 chr1 2964285 2964286 rs114956861 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 607 chr1 2964357 2964358 rs57055716 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 607 chr1 2964396 2964397 rs12044831 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 4455.000000,553.000000, 0.889577,0.110423, maf-5-some-pop,maf-5-all-pops 607 chr1 2965127 2965128 rs77059618 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 295.000000,4713.000000, 0.058906,0.941094, maf-5-some-pop,maf-5-all-pops 607 chr1 2966002 2966003 rs77847286 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop,maf-5-all-pops 607 chr1 2966708 2966709 rs112429434 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 607 chr1 2967038 2967039 rs2993479 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3315.000000,1693.000000, 0.661941,0.338059, maf-5-some-pop,maf-5-all-pops 607 chr1 2967207 2967208 rs59020148 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 607 chr1 2967562 2967563 rs145434694 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,C, 61.000000,4947.000000, 0.012180,0.987819, 607 chr1 2967931 2967932 rs60191353 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4319.000000,689.000000, 0.862420,0.137580, maf-5-some-pop,maf-5-all-pops 607 chr1 2968454 2968454 rs147542464 0 + - - -/CCAT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CCAT, 3942.000000,1066.000000, 0.787141,0.212859, 607 chr1 2968664 2968665 rs114320319 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 607 chr1 2968978 2968979 rs72630909 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4761.000000,247.000000, 0.950679,0.049321, maf-5-some-pop,maf-5-all-pops 607 chr1 2968982 2968983 rs77840846 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 559.000000,4449.000000, 0.111621,0.888379, maf-5-some-pop,maf-5-all-pops 607 chr1 2969055 2969056 rs59660465 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 607 chr1 2969275 2969276 rs112349318 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 607 chr1 2969867 2969868 rs12057633 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SC_SNP, 2 A,C, 4907.000000,101.000000, 0.979832,0.020168, 607 chr1 2970282 2970283 rs56298939 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,T, 4951.000000,57.000000, 0.988618,0.011382, 607 chr1 2970439 2970440 rs115480383 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 607 chr1 2970463 2970464 rs717795 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1421.000000,3587.000000, 0.283746,0.716254, maf-5-some-pop,maf-5-all-pops 607 chr1 2970601 2970602 rs12098022 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,SC_SNP, 2 A,C, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop,maf-5-all-pops 607 chr1 2970929 2970930 rs12060482 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,T, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop 607 chr1 2971139 2971140 rs10909869 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 306.000000,4702.000000, 0.061102,0.938898, maf-5-some-pop,maf-5-all-pops 607 chr1 2971447 2971448 rs12095431 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop,maf-5-all-pops 607 chr1 2971451 2971452 rs56069604 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB, 2 C,T, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop,maf-5-all-pops 607 chr1 2971642 2971642 rs145358061 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,T, 4763.000000,245.000000, 0.951078,0.048922, 607 chr1 2972150 2972151 rs113685334 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4922.000000,86.000000, 0.982827,0.017173, 607 chr1 2972496 2972497 rs12024636 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP, 2 A,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop,maf-5-all-pops 607 chr1 2973321 2973322 rs2993480 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3431.000000,1577.000000, 0.685104,0.314896, maf-5-some-pop,maf-5-all-pops 607 chr1 2973432 2973433 rs2993481 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,T, 3810.000000,1198.000000, 0.760783,0.239217, maf-5-some-pop,maf-5-all-pops 607 chr1 2974063 2974064 rs72630911 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB, 2 A,G, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 607 chr1 2974211 2974212 rs12057171 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop 607 chr1 2974437 2974438 rs118092204 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 73.000000,4935.000000, 0.014577,0.985423, 607 chr1 2975118 2975119 rs55775305 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB, 2 C,G, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 607 chr1 2975327 2975328 rs76425763 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 607 chr1 2975499 2975500 rs116374594 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 607 chr1 2975707 2975708 rs7555389 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop,maf-5-all-pops 607 chr1 2977787 2977788 rs12096573 0 + G G G/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,SC_SNP, 2 G,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 607 chr1 2978042 2978043 rs2075969 0 - G G C/G genomic single unknown 0 0 ncRNA exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 607 chr1 2978110 2978111 rs115790664 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 1 1000GENOMES, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 607 chr1 2978755 2978755 rs113565775 0 + - - -/G genomic insertion unknown 0 0 ncRNA between 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 3427.000000,1581.000000, 0.684305,0.315695, 607 chr1 2979173 2979174 rs41315262 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SI_EXO, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 607 chr1 2979183 2979184 rs59243365 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop,maf-5-all-pops 607 chr1 2979483 2979484 rs12062389 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 607 chr1 2979854 2979855 rs12742400 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 607 chr1 2980577 2980578 rs72630915 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4753.000000,255.000000, 0.949081,0.050919, maf-5-some-pop,maf-5-all-pops 607 chr1 2980792 2980793 rs12563622 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 660.000000,4348.000000, 0.131789,0.868211, maf-5-some-pop 607 chr1 2980833 2980834 rs12562250 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 10 1000GENOMES,ABI,BGI,BUSHMAN,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop 607 chr1 2981840 2981841 rs6665853 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1056.000000,3952.000000, 0.210863,0.789137, maf-5-some-pop 607 chr1 2982108 2982109 rs76561137 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop 607 chr1 2982620 2982621 rs12070295 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop 607 chr1 2983317 2983318 rs2788091 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 512.000000,4496.000000, 0.102236,0.897764, maf-5-some-pop,maf-5-all-pops 607 chr1 2983387 2983388 rs78384459 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, 607 chr1 2983629 2983630 rs148620083 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 55.000000,4953.000000, 0.010982,0.989018, 607 chr1 2983673 2983674 rs75412307 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 158.000000,4850.000000, 0.031549,0.968450, 607 chr1 2983962 2983963 rs2297828 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 13 1000GENOMES,ABI,CGAP-GAI,CORNELL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,MGC_GENOME_DIFF,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1029.000000,3979.000000, 0.205471,0.794529, maf-5-some-pop,maf-5-all-pops 607 chr1 2984086 2984087 rs2297829 0 + C C A/C genomic single unknown 0 0 near-gene-5,ncRNA exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CGAP-GAI,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 1571.000000,3437.000000, 0.313698,0.686302, maf-5-some-pop 607 chr1 2984973 2984974 rs553130060 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 607 chr1 2985542 2985543 rs36116688 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,ABI,SSMP, 2 -,G, 3396.000000,1612.000000, 0.678115,0.321885, 607 chr1 2985626 2985629 rs574851298 0 + GGC GGC -/GGC genomic deletion unknown 0 0 near-gene-5,cds-indel range 1 1 1000GENOMES, 2 -,GGC, 107.000000,4901.000000, 0.021366,0.978634, 607 chr1 2985807 2985808 rs558515255 0 + T T C/T genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 1 1000GENOMES, 2 C,T, 174.000000,4834.000000, 0.034744,0.965256, 607 chr1 2985884 2985885 rs7413494 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,ABI,EVA-GONL,GMI,NHLBI-ESP,SC_JCM,SSMP, 2 C,G, 3204.000000,1804.000000, 0.639776,0.360224, 607 chr1 2986518 2986519 rs185342794 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 607 chr1 2986667 2986668 rs530340533 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, 607 chr1 2986862 2986863 rs546847153 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 109.000000,4899.000000, 0.021765,0.978235, 607 chr1 2987029 2987030 rs566660960 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4939.000000,69.000000, 0.986222,0.013778, 607 chr1 2987623 2987624 rs114526461 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 607 chr1 2987822 2987823 rs12563458 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4723.000000,285.000000, 0.943091,0.056909, maf-5-some-pop,maf-5-all-pops 607 chr1 2987882 2987883 rs909510 0 - G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 607 chr1 2988548 2988549 rs72846020 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 607 chr1 2988724 2988725 rs117992485 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 607 chr1 2988910 2988910 rs140083104 0 + - - -/GT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,GT, 4947.000000,61.000000, 0.987819,0.012180, 607 chr1 2989270 2989271 rs146758878 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,MPI_MOLGEN, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 607 chr1 2989455 2989456 rs2981890 0 - A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 607 chr1 2989481 2989482 rs115461137 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4946.000000,62.000000, 0.987620,0.012380, 607 chr1 2989542 2989543 rs1572656 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 G,T, 357.000000,4651.000000, 0.071286,0.928714, maf-5-some-pop 607 chr1 2990993 2990994 rs35397508 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF, 2 C,T, 3195.000000,1813.000000, 0.637979,0.362021, maf-5-some-pop,maf-5-all-pops 607 chr1 2991807 2991808 rs2993482 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 G,T, 794.000000,4214.000000, 0.158546,0.841454, maf-5-some-pop 607 chr1 2991932 2991933 rs6696404 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 607 chr1 2992250 2992251 rs2993483 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,SC_JCM,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 607 chr1 2992314 2992315 rs2993484 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 607 chr1 2992470 2992471 rs2993485 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_JCM, 2 C,T, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 607 chr1 2992503 2992504 rs12076923 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 93.000000,4915.000000, 0.018570,0.981430, 607 chr1 2993474 2993475 rs60823305 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop,maf-5-all-pops 607 chr1 2993637 2993638 rs2993486 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4353.000000,655.000000, 0.869209,0.130791, maf-5-some-pop 607 chr1 2993732 2993733 rs2993487 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop 607 chr1 2993739 2993740 rs4648358 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 607 chr1 2993785 2993786 rs7518164 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3857.000000,1151.000000, 0.770168,0.229832, maf-5-some-pop,maf-5-all-pops 607 chr1 2993806 2993807 rs2981888 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 607 chr1 2994335 2994336 rs4648359 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2922.000000,2086.000000, 0.583466,0.416534, maf-5-some-pop 607 chr1 2994539 2994540 rs2788092 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,G, 4498.000000,510.000000, 0.898163,0.101837, maf-5-some-pop 607 chr1 2994602 2994603 rs34471979 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 2927.000000,2081.000000, 0.584465,0.415535, 607 chr1 2994900 2994901 rs2993488 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4388.000000,620.000000, 0.876198,0.123802, maf-5-some-pop 607 chr1 2995281 2995282 rs35703551 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,ABI,BL,EVA-GONL,HUMANGENOME_JCVI,PJP, 2 -,G, 74.000000,4934.000000, 0.014776,0.985224, 607 chr1 2995300 2995301 rs137943065 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 607 chr1 2995448 2995449 rs7515436 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2918.000000,2090.000000, 0.582668,0.417332, maf-5-some-pop,maf-5-all-pops 607 chr1 2995473 2995474 rs79486068 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 607 chr1 2995632 2995633 rs2788093 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM, 2 C,T, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop,maf-5-all-pops 607 chr1 2995917 2995918 rs144807835 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 62.000000,4946.000000, 0.012380,0.987620, 607 chr1 2995968 2995968 rs5772093 0 + - - -/TTCGGGG genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BL,BUSHMAN,LUNTER, 2 -,TTCGGGG, 792.000000,4216.000000, 0.158147,0.841853, 607 chr1 2996195 2996196 rs7525173 0 + C C C/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1871.000000,3137.000000, 0.373602,0.626398, maf-5-some-pop,maf-5-all-pops 607 chr1 2996441 2996442 rs10909871 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop,maf-5-all-pops 607 chr1 2996521 2996522 rs4648452 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4495.000000,513.000000, 0.897564,0.102436, maf-5-some-pop,maf-5-all-pops 607 chr1 2996555 2996556 rs1569420 0 - C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 607 chr1 2997419 2997420 rs114036836 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,C, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 607 chr1 2997469 2997470 rs141963636 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,C, 95.000000,4913.000000, 0.018970,0.981030, 607 chr1 2997471 2997472 rs13328679 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,BUSHMAN, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 607 chr1 2998021 2998022 rs2788094 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 4737.000000,271.000000, 0.945887,0.054113, maf-5-some-pop,maf-5-all-pops 607 chr1 2998312 2998313 rs12745140 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 607 chr1 2998384 2998385 rs114214426 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 607 chr1 2998919 2998920 rs2993489 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_JCM,TISHKOFF, 2 G,T, 4938.000000,70.000000, 0.986022,0.013978, 607 chr1 2998997 2998998 rs10909873 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2178.000000,2830.000000, 0.434904,0.565096, maf-5-some-pop,maf-5-all-pops 607 chr1 2999023 2999024 rs11578424 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2014.000000,2994.000000, 0.402157,0.597843, maf-5-some-pop,maf-5-all-pops 607 chr1 2999491 2999492 rs11580403 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4562.000000,446.000000, 0.910942,0.089057, maf-5-some-pop,maf-5-all-pops 607 chr1 2999517 2999518 rs11581212 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,BL,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4549.000000,459.000000, 0.908347,0.091653, maf-5-some-pop 607 chr1 2999714 2999715 rs6674036 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2243.000000,2765.000000, 0.447883,0.552117, maf-5-some-pop,maf-5-all-pops 607 chr1 2999802 2999803 rs116345467 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 607 chr1 2999889 2999890 rs6683976 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 2146.000000,2862.000000, 0.428514,0.571486, maf-5-some-pop,maf-5-all-pops 607 chr1 3000145 3000146 rs115632128 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 607 chr1 3000156 3000156 rs569678638 0 + - - -/CC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,CC, 2122.000000,2886.000000, 0.423722,0.576278, 607 chr1 3000908 3000909 rs138962646 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 G,T, 4921.000000,87.000000, 0.982628,0.017372, 607 chr1 3001281 3001282 rs2788095 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,TISHKOFF, 2 A,C, 1868.000000,3140.000000, 0.373003,0.626997, maf-5-some-pop,maf-5-all-pops 607 chr1 3001392 3001393 rs2742683 0 - G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SC_JCM,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 607 chr1 3001702 3001703 rs6690540 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2148.000000,2860.000000, 0.428914,0.571086, maf-5-some-pop,maf-5-all-pops 607 chr1 3001712 3001713 rs79389901 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop 607 chr1 3003275 3003276 rs115014572 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 607 chr1 3003531 3003532 rs11801109 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 755.000000,4253.000000, 0.150759,0.849241, maf-5-some-pop 607 chr1 3003758 3003759 rs146420946 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4727.000000,281.000000, 0.943890,0.056110, 607 chr1 3003806 3003807 rs548031611 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 144.000000,4864.000000, 0.028754,0.971246, 607 chr1 3005012 3005012 rs373778011 0 + - - -/TTATTATTTAT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,TTATTATTTAT, 4069.000000,939.000000, 0.812500,0.187500, 607 chr1 3005084 3005085 rs34014659 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, 607 chr1 3005637 3005638 rs34884268 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop,maf-5-all-pops 607 chr1 3005749 3005750 rs34782467 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop,maf-5-all-pops 607 chr1 3006479 3006479 rs545768525 0 + - - -/TCATTCAT/TCATTCATTCATTCAT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 3 -,TCATTCAT,TCATTCATTCATTCAT, 2775.000000,2225.000000,8.000000, 0.554114,0.444289,0.001597, 607 chr1 3006626 3006627 rs55932943 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4308.000000,700.000000, 0.860224,0.139776, maf-5-some-pop 607 chr1 3007009 3007010 rs12745331 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 607 chr1 3007038 3007039 rs2817165 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2919.000000,2089.000000, 0.582867,0.417133, maf-5-some-pop,maf-5-all-pops 607 chr1 3007570 3007572 rs58914207 0 + TC TC -/TC genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,TC, 540.000000,4468.000000, 0.107827,0.892173, 607 chr1 3007674 3007675 rs34300623 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop,maf-5-all-pops 607 chr1 3007882 3007883 rs2788096 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3174.000000,1834.000000, 0.633786,0.366214, maf-5-some-pop,maf-5-all-pops 607 chr1 3008095 3008096 rs6693385 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4361.000000,647.000000, 0.870807,0.129193, maf-5-some-pop 607 chr1 3008556 3008557 rs114665895 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 607 chr1 3008684 3008684 rs201359782 0 + - - -/TGG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,TGG, 4849.000000,159.000000, 0.968251,0.031749, 607 chr1 3008688 3008688 rs3067411 0 - - - -/GC genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,GMI,LUNTER,SSIP,TSC-CSHL, 2 -,GC, 2658.000000,2350.000000, 0.530751,0.469249, 607 chr1 3008755 3008756 rs142482699 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 74.000000,4934.000000, 0.014776,0.985224, 607 chr1 3008886 3008896 rs33948447 0 + CTGAGGGTAT CTGAGGGTAT -/CTGAGGGTAT genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP, 2 -,CTGAGGGTAT, 4575.000000,433.000000, 0.913538,0.086462, 607 chr1 3009179 3009180 rs114545829 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 607 chr1 3009968 3009969 rs7543737 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2268.000000,2740.000000, 0.452875,0.547125, maf-5-some-pop,maf-5-all-pops 607 chr1 3010316 3010317 rs760565 0 - A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 607 chr1 3010326 3010327 rs4648361 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2296.000000,2712.000000, 0.458466,0.541534, maf-5-some-pop,maf-5-all-pops 607 chr1 3010977 3010978 rs59085424 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 607 chr1 3010981 3010982 rs78021538 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, 607 chr1 3011023 3011024 rs59169459 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 A,G, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop,maf-5-all-pops 607 chr1 3011146 3011147 rs114205356 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops 607 chr1 3011285 3011286 rs2981874 0 - C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 607 chr1 3011449 3011453 rs149879720 0 + CTTC CTTC -/CTTC genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CTTC, 1144.000000,3864.000000, 0.228435,0.771565, 607 chr1 3011548 3011549 rs10449220 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1917.000000,3091.000000, 0.382788,0.617212, maf-5-some-pop,maf-5-all-pops 607 chr1 3011557 3011558 rs10449221 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 2009.000000,2999.000000, 0.401158,0.598842, maf-5-some-pop,maf-5-all-pops 607 chr1 3011599 3011600 rs2993490 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,SC_JCM,TISHKOFF, 2 C,T, 138.000000,4870.000000, 0.027556,0.972444, maf-5-some-pop,maf-5-all-pops 607 chr1 3011609 3011610 rs2993491 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2379.000000,2629.000000, 0.475040,0.524960, maf-5-some-pop,maf-5-all-pops 607 chr1 3011887 3011888 rs142193476 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,G, 456.000000,4552.000000, 0.091054,0.908946, 607 chr1 3011938 3011951 rs144532701 0 + ATGTCATGGGCTC ATGTCATGGGCTC -/ATGTCATGGGCTC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,ATGTCATGGGCTC, 424.000000,4584.000000, 0.084665,0.915335, 607 chr1 3012325 3012326 rs12135325 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop 607 chr1 3012373 3012374 rs4648362 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2826.000000,2182.000000, 0.564297,0.435703, maf-5-some-pop,maf-5-all-pops 607 chr1 3012499 3012500 rs142972842 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4943.000000,65.000000, 0.987021,0.012979, 607 chr1 3012979 3012980 rs6666748 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop 607 chr1 3013133 3013134 rs2817166 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_JCM,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 607 chr1 3013144 3013145 rs2788097 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1410.000000,3598.000000, 0.281550,0.718450, maf-5-some-pop,maf-5-all-pops 607 chr1 3013276 3013277 rs6702771 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3106.000000,1902.000000, 0.620208,0.379792, maf-5-some-pop,maf-5-all-pops 607 chr1 3013395 3013396 rs114544239 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, maf-5-some-pop,maf-5-all-pops 607 chr1 3013503 3013504 rs116765402 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 607 chr1 3013521 3013522 rs12130877 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop 607 chr1 3013632 3013633 rs2817167 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3308.000000,1700.000000, 0.660543,0.339457, maf-5-some-pop,maf-5-all-pops 607 chr1 3013685 3013686 rs55915245 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 607 chr1 3013689 3013690 rs2817168 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1700.000000,3308.000000, 0.339457,0.660543, maf-5-some-pop,maf-5-all-pops 607 chr1 3013783 3013783 rs34727240 0 + - - -/A genomic insertion unknown 0 0 intron between 1 9 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP, 2 -,A, 1702.000000,3306.000000, 0.339856,0.660144, 607 chr1 3013869 3013870 rs7539543 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop 607 chr1 3013917 3013918 rs2817169 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1446.000000,3562.000000, 0.288738,0.711262, maf-5-some-pop,maf-5-all-pops 607 chr1 3014034 3014035 rs2817170 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3304.000000,1704.000000, 0.659744,0.340256, maf-5-some-pop,maf-5-all-pops 607 chr1 3014104 3014105 rs115143588 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 63.000000,4945.000000, 0.012580,0.987420, 607 chr1 3014120 3014123 rs148377291 0 + TTC TTC -/TTC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,TTC, 463.000000,4545.000000, 0.092452,0.907548, 607 chr1 3014463 3014464 rs111499807 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 608 chr1 3014792 3014793 rs58751817 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 608 chr1 3015095 3015096 rs145388423 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 608 chr1 3015099 3015100 rs58263547 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV, 2 C,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 608 chr1 3015134 3015135 rs55650075 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop 608 chr1 3015357 3015358 rs10909874 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1560.000000,3448.000000, 0.311502,0.688498, maf-5-some-pop,maf-5-all-pops 608 chr1 3015385 3015386 rs140943213 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 608 chr1 3015465 3015466 rs60030462 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 608 chr1 3015591 3015592 rs55674255 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 608 chr1 3015643 3015644 rs79705252 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 608 chr1 3015841 3015842 rs55784774 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 608 chr1 3016086 3016087 rs75724617 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4681.000000,327.000000, 0.934704,0.065296, maf-5-some-pop 608 chr1 3016116 3016117 rs79191971 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop,maf-5-all-pops 608 chr1 3016354 3016355 rs78858014 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 608 chr1 3016578 3016579 rs141019481 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 608 chr1 3016953 3016954 rs112895725 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 608 chr1 3016997 3016998 rs138666889 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4954.000000,54.000000, 0.989217,0.010783, 608 chr1 3017157 3017158 rs72630937 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop,maf-5-all-pops 608 chr1 3017235 3017236 rs76312659 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 413.000000,4595.000000, 0.082468,0.917532, maf-5-some-pop,maf-5-all-pops 608 chr1 3017267 3017268 rs59165975 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 -,G, 66.000000,4942.000000, 0.013179,0.986821, 608 chr1 3017750 3017751 rs12132760 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP,SSMP, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, 608 chr1 3017763 3017764 rs55853178 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 608 chr1 3018066 3018067 rs6699913 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCM_SSAHASNP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 608 chr1 3018225 3018226 rs2993492 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1096.000000,3912.000000, 0.218850,0.781150, maf-5-some-pop,maf-5-all-pops 608 chr1 3018934 3018935 rs150014345 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 608 chr1 3018994 3018995 rs74633240 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 378.000000,4630.000000, 0.075479,0.924521, maf-5-some-pop 608 chr1 3019519 3019520 rs12740402 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,C, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop,maf-5-all-pops 608 chr1 3019626 3019627 rs12131890 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop,maf-5-all-pops 608 chr1 3019912 3019913 rs146784602 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 608 chr1 3020187 3020188 rs56029998 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop,maf-5-all-pops 608 chr1 3020245 3020246 rs2993493 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1206.000000,3802.000000, 0.240815,0.759185, maf-5-some-pop,maf-5-all-pops 608 chr1 3020515 3020516 rs116127887 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 608 chr1 3020524 3020525 rs116325366 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 608 chr1 3021062 3021063 rs2993494 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 998.000000,4010.000000, 0.199281,0.800719, maf-5-some-pop,maf-5-all-pops 608 chr1 3021107 3021108 rs34368404 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 554.000000,4454.000000, 0.110623,0.889377, maf-5-some-pop,maf-5-all-pops 608 chr1 3021110 3021111 rs115016691 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 387.000000,4621.000000, 0.077276,0.922724, maf-5-some-pop 608 chr1 3021312 3021313 rs71634313 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,G, 554.000000,4454.000000, 0.110623,0.889377, maf-5-some-pop,maf-5-all-pops 608 chr1 3021316 3021317 rs61048472 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 A,C, 61.000000,4947.000000, 0.012180,0.987819, 608 chr1 3021551 3021552 rs12133978 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 903.000000,4105.000000, 0.180312,0.819688, maf-5-some-pop,maf-5-all-pops 608 chr1 3021686 3021687 rs11808136 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4093.000000,915.000000, 0.817292,0.182708, maf-5-some-pop,maf-5-all-pops 608 chr1 3021793 3021794 rs7528746 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,TISHKOFF,WI_SSAHASNP, 2 A,C, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 608 chr1 3021915 3021916 rs7519904 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 366.000000,4642.000000, 0.073083,0.926917, maf-5-some-pop,maf-5-all-pops 608 chr1 3022714 3022715 rs2993496 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2350.000000,2658.000000, 0.469249,0.530751, maf-5-some-pop,maf-5-all-pops 608 chr1 3023131 3023132 rs2993497 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2188.000000,2820.000000, 0.436901,0.563099, maf-5-some-pop,maf-5-all-pops 608 chr1 3023186 3023187 rs116495192 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 608 chr1 3023250 3023251 rs56363358 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 A,C, 215.000000,4793.000000, 0.042931,0.957069, maf-5-some-pop,maf-5-all-pops 608 chr1 3023285 3023286 rs76893188 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 115.000000,4893.000000, 0.022963,0.977037, 608 chr1 3023305 3023306 rs74497009 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 608 chr1 3023326 3023327 rs116340119 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 608 chr1 3023394 3023395 rs2993498 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3889.000000,1119.000000, 0.776558,0.223442, maf-5-some-pop,maf-5-all-pops 608 chr1 3023704 3023705 rs6667850 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 3878.000000,1130.000000, 0.774361,0.225639, maf-5-some-pop,maf-5-all-pops 608 chr1 3023917 3023918 rs79291050 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 608 chr1 3024252 3024253 rs79434823 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop,maf-5-all-pops 608 chr1 3024366 3024367 rs2993499 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3946.000000,1062.000000, 0.787939,0.212061, maf-5-some-pop,maf-5-all-pops 608 chr1 3024547 3024548 rs113724623 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 608 chr1 3024704 3024705 rs2993500 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2832.000000,2176.000000, 0.565495,0.434505, maf-5-some-pop,maf-5-all-pops 608 chr1 3025284 3025285 rs79123085 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 608 chr1 3025468 3025469 rs563438036 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 1518.000000,3490.000000, 0.303115,0.696885, 608 chr1 3025469 3025469 rs530643377 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 4791.000000,217.000000, 0.956669,0.043331, 608 chr1 3025647 3025653 rs142882995 0 + AATAAT AATAAT -/AATAAT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BILGI_BIOE,GMI,LUNTER,SSMP, 2 -,AATAAT, 2202.000000,2806.000000, 0.554940,0.445060, 608 chr1 3025845 3025846 rs12137954 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1016.000000,3992.000000, 0.202875,0.797125, maf-5-some-pop,maf-5-all-pops 608 chr1 3025884 3025885 rs75725715 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4950.000000,58.000000, 0.988419,0.011582, 608 chr1 3026099 3026100 rs12135664 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3994.000000,1014.000000, 0.797524,0.202476, maf-5-some-pop 608 chr1 3026259 3026260 rs2981868 0 - T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3026436 3026437 rs138678693 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 608 chr1 3026508 3026509 rs59909070 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 1030.000000,3978.000000, 0.205671,0.794329, maf-5-some-pop,maf-5-all-pops 608 chr1 3026641 3026642 rs75691533 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,GMI,SSMP, 2 C,T, 215.000000,4793.000000, 0.042931,0.957069, 608 chr1 3026745 3026746 rs76080044 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,GMI,SSMP, 2 A,C, 3860.000000,1148.000000, 0.770767,0.229233, 608 chr1 3026763 3026764 rs12757693 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,SSAHASNP, 2 A,G, 4933.000000,75.000000, 0.985024,0.014976, 608 chr1 3026897 3026898 rs536037124 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 608 chr1 3027340 3027341 rs2993502 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2618.000000,2390.000000, 0.522764,0.477236, maf-5-some-pop,maf-5-all-pops 608 chr1 3027374 3027375 rs75849208 0 + G G G/T genomic single by-frequency,by-1000genomes 0.000918 0.0214 intron exact 1 1 1000GENOMES, 2 G,T, 116.000000,2.000000, 0.983051,0.016949, 608 chr1 3027862 3027863 rs149956057 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 608 chr1 3027904 3027905 rs66492337 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 1019.000000,3989.000000, 0.203474,0.796526, maf-5-some-pop,maf-5-all-pops 608 chr1 3027919 3027920 rs68018581 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3953.000000,1055.000000, 0.789337,0.210663, maf-5-some-pop,maf-5-all-pops 608 chr1 3028020 3028021 rs192943985 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 608 chr1 3028918 3028919 rs11808946 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3875.000000,1133.000000, 0.773762,0.226238, maf-5-some-pop,maf-5-all-pops 608 chr1 3028986 3028987 rs2993503 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1582.000000,3426.000000, 0.315895,0.684105, maf-5-some-pop,maf-5-all-pops 608 chr1 3029034 3029035 rs79817280 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 608 chr1 3029211 3029212 rs10909875 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4257.000000,751.000000, 0.850040,0.149960, maf-5-some-pop,maf-5-all-pops 608 chr1 3029289 3029290 rs147786118 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 608 chr1 3029315 3029316 rs114287410 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 608 chr1 3029453 3029454 rs75663983 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 608 chr1 3029656 3029657 rs12136745 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1138.000000,3870.000000, 0.227236,0.772764, maf-5-some-pop,maf-5-all-pops 608 chr1 3029954 3029955 rs201361902 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,LUNTER,TISHKOFF, 2 -,G, 87.000000,4921.000000, 0.017372,0.982628, 608 chr1 3029981 3029982 rs58968988 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1136.000000,3872.000000, 0.226837,0.773163, maf-5-some-pop,maf-5-all-pops 608 chr1 3030048 3030052 rs200016738 0 + GGAG GGAG -/GGAG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GGAG, 55.000000,4953.000000, 0.010982,0.989018, 608 chr1 3030099 3030100 rs116434688 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 4922.000000,86.000000, 0.982827,0.017173, 608 chr1 3030100 3030101 rs12408126 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 556.000000,4452.000000, 0.111022,0.888978, maf-5-some-pop,maf-5-all-pops 608 chr1 3030125 3030126 rs114340142 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, 608 chr1 3030623 3030624 rs2981867 0 - G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3030782 3030782 rs143413205 0 + - - -/AC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AC, 4248.000000,760.000000, 0.848243,0.151757, 608 chr1 3030785 3030791 rs558192098 0 + CACACG CACACG -/CACACG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CACACG, 214.000000,4794.000000, 0.042732,0.957268, 608 chr1 3030791 3030792 rs528656992 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 86.000000,4922.000000, 0.017173,0.982827, 608 chr1 3030820 3030821 rs114956514 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 608 chr1 3030827 3030828 rs6691996 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,BL,EVA-GONL, 2 A,G, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 608 chr1 3030830 3030831 rs6695017 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,BL,EVA-GONL,GMI,HGSV,PJP,SSMP,TISHKOFF, 2 C,T, 1192.000000,3816.000000, 0.238019,0.761981, maf-5-some-pop,maf-5-all-pops 608 chr1 3030883 3030884 rs6687292 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF, 2 C,T, 2741.000000,2267.000000, 0.547324,0.452676, maf-5-some-pop,maf-5-all-pops 608 chr1 3030919 3030927 rs201290470 0 + GCACACAC GCACACAC -/GCACACAC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GCACACAC, 85.000000,4923.000000, 0.016973,0.983027, 608 chr1 3030926 3030928 rs199524152 0 + CG CG -/CG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,SSMP, 2 -,CG, 66.000000,4942.000000, 0.013179,0.986821, 608 chr1 3030927 3030928 rs34699619 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,BCMHGSC_JDW,EVA-GONL,HUMANGENOME_JCVI,PJP, 2 A,G, 508.000000,4500.000000, 0.101438,0.898562, 608 chr1 3030991 3030991 rs142220406 0 + - - -/G genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BL,GMI,LUNTER,TISHKOFF, 2 -,G, 3387.000000,1621.000000, 0.676318,0.323682, 608 chr1 3031005 3031006 rs376183562 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, 608 chr1 3031008 3031009 rs575739785 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4792.000000,216.000000, 0.956869,0.043131, 608 chr1 3031016 3031017 rs116197544 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop,maf-5-all-pops 608 chr1 3031018 3031019 rs115019792 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop,maf-5-all-pops 608 chr1 3031068 3031069 rs59633979 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,HGSV,TISHKOFF, 2 C,T, 553.000000,4455.000000, 0.110423,0.889577, 608 chr1 3031070 3031072 rs139234332 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CA, 89.000000,4919.000000, 0.017772,0.982228, 608 chr1 3031073 3031074 rs373852623 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, 608 chr1 3031082 3031083 rs370056474 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 4920.000000,88.000000, 0.982428,0.017572, 608 chr1 3031107 3031109 rs199993488 0 + AC AC -/AC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 -,AC, 148.000000,4860.000000, 0.029553,0.970447, 608 chr1 3031121 3031122 rs10909876 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2684.000000,2324.000000, 0.535942,0.464058, 608 chr1 3031137 3031138 rs10909877 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,T, 3405.000000,1603.000000, 0.679912,0.320088, 608 chr1 3031189 3031189 rs142682550 0 + - - -/AC genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BL,GMI, 2 -,AC, 3438.000000,1570.000000, 0.686502,0.313498, 608 chr1 3031208 3031210 rs202047941 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CA, 220.000000,4788.000000, 0.043930,0.956070, 608 chr1 3031253 3031254 rs77089474 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 441.000000,4567.000000, 0.088059,0.911941, maf-5-some-pop 608 chr1 3031321 3031322 rs72630950 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop 608 chr1 3031718 3031719 rs75025529 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 608 chr1 3031723 3031724 rs117239931 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 608 chr1 3031971 3031972 rs74050105 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 608 chr1 3032145 3032146 rs72846091 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop,maf-5-all-pops 608 chr1 3032158 3032159 rs74050106 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 608 chr1 3032564 3032565 rs2981865 0 - G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3032818 3032819 rs142882647 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 608 chr1 3032885 3032886 rs72846094 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 608 chr1 3033109 3033110 rs116600940 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 608 chr1 3033152 3033153 rs111257317 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 608 chr1 3033156 3033157 rs144154151 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 608 chr1 3034574 3034575 rs58543926 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 557.000000,4451.000000, 0.111222,0.888778, maf-5-some-pop,maf-5-all-pops 608 chr1 3034605 3034606 rs10909878 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BL,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP, 2 A,G, 4757.000000,251.000000, 0.949880,0.050120, maf-5-some-pop,maf-5-all-pops 608 chr1 3034641 3034642 rs12408983 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 608 chr1 3034669 3034670 rs12141827 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,GMI,SC_SNP,SSMP, 2 C,T, 251.000000,4757.000000, 0.050120,0.949880, 608 chr1 3034677 3034678 rs74550123 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,ILLUMINA-UK,TISHKOFF, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, 608 chr1 3034685 3034686 rs147422225 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,GMI,SSMP, 2 C,T, 128.000000,4880.000000, 0.025559,0.974441, 608 chr1 3035092 3035093 rs79424250 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop,maf-5-all-pops 608 chr1 3035226 3035227 rs6690373 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3669.000000,1339.000000, 0.732628,0.267372, maf-5-some-pop,maf-5-all-pops 608 chr1 3035289 3035299 rs201967702 0 + GGGGGCCACG GGGGGCCACG -/GGGGGCCACG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GGGGGCCACG, 82.000000,4926.000000, 0.016374,0.983626, 608 chr1 3035353 3035354 rs74050109 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 608 chr1 3035761 3035762 rs12409836 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3503.000000,1505.000000, 0.699481,0.300519, maf-5-some-pop,maf-5-all-pops 608 chr1 3035778 3035779 rs2472822 0 - C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3035848 3035849 rs78071572 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop,maf-5-all-pops 608 chr1 3035882 3035883 rs112696946 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 608 chr1 3036076 3036077 rs72846097 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4070.000000,938.000000, 0.812700,0.187300, maf-5-some-pop,maf-5-all-pops 608 chr1 3036319 3036320 rs77093975 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop,maf-5-all-pops 608 chr1 3036326 3036327 rs72846099 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 608 chr1 3036448 3036449 rs59603262 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,TISHKOFF, 2 G,T, 133.000000,4875.000000, 0.026557,0.973442, 608 chr1 3036601 3036602 rs143702617 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 86.000000,4922.000000, 0.017173,0.982827, 608 chr1 3036611 3036614 rs202228829 0 + TTG TTG -/TTG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TTG, 201.000000,4807.000000, 0.040136,0.959864, 608 chr1 3037716 3037717 rs114940260 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 608 chr1 3037956 3037957 rs2472821 0 - A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SC_JCM,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 608 chr1 3038436 3038437 rs11809737 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,HGSV,TISHKOFF, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 608 chr1 3038529 3038530 rs6704012 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 C,T, 1034.000000,3974.000000, 0.206470,0.793530, maf-5-some-pop,maf-5-all-pops 608 chr1 3039030 3039031 rs77136080 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 608 chr1 3039147 3039148 rs2817171 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 795.000000,4213.000000, 0.158746,0.841254, maf-5-some-pop,maf-5-all-pops 608 chr1 3039151 3039152 rs74050114 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop,maf-5-all-pops 608 chr1 3039241 3039242 rs57453122 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop,maf-5-all-pops 608 chr1 3039499 3039500 rs75708078 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 608 chr1 3039926 3039927 rs74050115 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop,maf-5-all-pops 608 chr1 3040003 3040004 rs2742671 0 - G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3040184 3040185 rs2981863 0 - G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3040305 3040306 rs74050117 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 608 chr1 3040852 3040853 rs116697543 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, 608 chr1 3041220 3041221 rs9887973 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4724.000000,284.000000, 0.943291,0.056709, maf-5-some-pop,maf-5-all-pops 608 chr1 3041457 3041457 rs143003510 0 + - - -/C genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,C, 4723.000000,285.000000, 0.943091,0.056909, 608 chr1 3041518 3041519 rs2817172 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3042.000000,1966.000000, 0.607428,0.392572, maf-5-some-pop,maf-5-all-pops 608 chr1 3041631 3041632 rs77009640 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,C, 4951.000000,57.000000, 0.988618,0.011382, 608 chr1 3041650 3041651 rs2817173 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4437.000000,571.000000, 0.885982,0.114018, maf-5-some-pop,maf-5-all-pops 608 chr1 3041803 3041804 rs74050118 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop,maf-5-all-pops 608 chr1 3041915 3041916 rs74050119 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop,maf-5-all-pops 608 chr1 3042192 3042193 rs12058292 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_SNP, 2 A,C, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 608 chr1 3042350 3042351 rs79189450 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, 608 chr1 3042833 3042834 rs114890269 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BL,EVA-GONL, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 608 chr1 3043043 3043044 rs11800064 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4292.000000,716.000000, 0.857029,0.142971, maf-5-some-pop,maf-5-all-pops 608 chr1 3043394 3043395 rs72846804 0 + A A A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,T, 4956.000000,52.000000, 0.989617,0.010383, 608 chr1 3043565 3043566 rs12410830 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4844.000000,164.000000, 0.967252,0.032748, 608 chr1 3044433 3044434 rs72846807 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 680.000000,4328.000000, 0.135783,0.864217, maf-5-some-pop,maf-5-all-pops 608 chr1 3044651 3044652 rs35529420 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 9 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, 608 chr1 3044862 3044863 rs75693174 0 + C C -/C genomic deletion unknown 0 0 intron,near-gene-3 exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,C, 687.000000,4321.000000, 0.137181,0.862819, 608 chr1 3044870 3044871 rs35951269 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,ABI,BL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 608 chr1 3044976 3044977 rs6698974 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 9 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop 608 chr1 3045232 3045255 rs147796784 0 + TCCCACCATGCTACTGGAGACCA TCCCACCATGCTACTGGAGACCA -/TCCCACCATGCTACTGGAGACCA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,TCCCACCATGCTACTGGAGACCA, 1594.000000,3414.000000, 0.318291,0.681709, 608 chr1 3045330 3045331 rs116147068 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 192.000000,4816.000000, 0.038339,0.961661, 608 chr1 3045508 3045509 rs377023612 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 64.000000,4944.000000, 0.012780,0.987220, 608 chr1 3045615 3045616 rs552279522 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, 608 chr1 3045622 3045623 rs79143856 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA-UK,SSMP,TISHKOFF, 2 G,T, 824.000000,4184.000000, 0.164537,0.835463, maf-5-some-pop,maf-5-all-pops 608 chr1 3045745 3045745 rs112753056 0 + - - -/GT genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,LUNTER, 2 -,GT, 1826.000000,3182.000000, 0.364617,0.635383, 608 chr1 3045858 3045859 rs561457910 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, 608 chr1 3045859 3045860 rs373022102 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 608 chr1 3045865 3045893 rs200385056 0 + GTGTCCTGCCTGGTGTGTGTGTGGGTGT GTGTCCTGCCTGGTGTGTGTGTGGGTGT -/GTGTCCTGCCTGGTGTGTGTGTGGGTGT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,GMI, 2 -,GTGTCCTGCCTGGTGTGTGTGTGGGTGT, 1844.000000,3164.000000, 0.368211,0.631789, 608 chr1 3045891 3045892 rs61765200 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BCMHGSC_JDW, 2 C,G, 1312.000000,3696.000000, 0.261981,0.738019, 608 chr1 3045943 3045944 rs534333100 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 746.000000,4262.000000, 0.148962,0.851038, 608 chr1 3045988 3045989 rs375165684 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 608 chr1 3046010 3046011 rs2817176 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1868.000000,3140.000000, 0.373003,0.626997, maf-5-some-pop,maf-5-all-pops 608 chr1 3046294 3046295 rs12094494 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 151.000000,4857.000000, 0.030152,0.969848, 608 chr1 3046462 3046463 rs2817177 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3213.000000,1795.000000, 0.641573,0.358427, maf-5-some-pop 608 chr1 3046478 3046479 rs141127483 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 59.000000,4949.000000, 0.011781,0.988219, 608 chr1 3046532 3046533 rs79888331 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop,maf-5-all-pops 608 chr1 3046710 3046711 rs35625823 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP, 2 G,T, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 608 chr1 3046825 3046826 rs35201154 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP, 2 G,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 608 chr1 3047171 3047172 rs2788086 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1794.000000,3214.000000, 0.358227,0.641773, maf-5-some-pop 608 chr1 3047195 3047196 rs74050123 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 608 chr1 3047251 3047252 rs2817178 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3135.000000,1873.000000, 0.625998,0.374002, maf-5-some-pop 608 chr1 3047361 3047361 rs34616112 0 + - - -/T genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,ABI,BILGI_BIOE,BUSHMAN,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 3133.000000,1875.000000, 0.625599,0.374401, 608 chr1 3047446 3047447 rs10797378 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1020.000000,3988.000000, 0.203674,0.796326, maf-5-some-pop 608 chr1 3047451 3047452 rs2788087 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1885.000000,3123.000000, 0.376398,0.623602, maf-5-some-pop,maf-5-all-pops 608 chr1 3047462 3047463 rs10909881 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 981.000000,4027.000000, 0.195887,0.804113, maf-5-some-pop,maf-5-all-pops 608 chr1 3047741 3047742 rs2817179 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3189.000000,1819.000000, 0.636781,0.363219, maf-5-some-pop,maf-5-all-pops 608 chr1 3048089 3048089 rs34840011 0 + - - -/A genomic insertion unknown 0 0 intron between 1 11 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 4075.000000,933.000000, 0.813698,0.186302, 608 chr1 3048297 3048298 rs2817180 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3221.000000,1787.000000, 0.643171,0.356829, maf-5-some-pop,maf-5-all-pops 608 chr1 3048370 3048371 rs2993504 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4228.000000,780.000000, 0.844249,0.155751, maf-5-some-pop,maf-5-all-pops 608 chr1 3048429 3048430 rs11801343 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,TISHKOFF, 2 G,T, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 608 chr1 3048741 3048742 rs35360783 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3717.000000,1291.000000, 0.742212,0.257788, maf-5-some-pop,maf-5-all-pops 608 chr1 3048780 3048781 rs377574637 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 608 chr1 3048832 3048833 rs56783981 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop 608 chr1 3049361 3049362 rs12024620 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 608 chr1 3049380 3049381 rs12021948 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 862.000000,4146.000000, 0.172125,0.827875, maf-5-some-pop,maf-5-all-pops 608 chr1 3049572 3049573 rs12740389 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop 608 chr1 3049702 3049703 rs371347070 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 608 chr1 3049854 3049855 rs35999894 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop,maf-5-all-pops 608 chr1 3050084 3050085 rs34733164 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SI_EXO, 2 A,C, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 608 chr1 3050220 3050221 rs12022170 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SI_EXO, 2 A,G, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop 608 chr1 3050330 3050331 rs12028027 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 866.000000,4142.000000, 0.172923,0.827077, maf-5-some-pop,maf-5-all-pops 608 chr1 3050361 3050362 rs12027117 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4143.000000,865.000000, 0.827276,0.172724, maf-5-some-pop,maf-5-all-pops 608 chr1 3050496 3050497 rs10909883 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4141.000000,867.000000, 0.826877,0.173123, maf-5-some-pop,maf-5-all-pops 608 chr1 3050593 3050594 rs12120879 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4142.000000,866.000000, 0.827077,0.172923, maf-5-some-pop,maf-5-all-pops 608 chr1 3050762 3050763 rs144129380 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 608 chr1 3050911 3050912 rs76635958 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 608 chr1 3050937 3050938 rs35848773 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 869.000000,4139.000000, 0.173522,0.826478, maf-5-some-pop,maf-5-all-pops 608 chr1 3051118 3051119 rs12028226 0 + T T A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 833.000000,4175.000000, 0.166334,0.833666, maf-5-some-pop 608 chr1 3051150 3051151 rs58672889 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,T, 833.000000,4175.000000, 0.166334,0.833666, 608 chr1 3051349 3051350 rs12724921 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP, 2 A,T, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,maf-5-all-pops 608 chr1 3051748 3051749 rs12725529 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 861.000000,4147.000000, 0.171925,0.828075, maf-5-some-pop,maf-5-all-pops 608 chr1 3051755 3051756 rs11800454 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 608 chr1 3052264 3052265 rs7535865 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4140.000000,868.000000, 0.826677,0.173323, maf-5-some-pop,maf-5-all-pops 608 chr1 3052500 3052501 rs4648363 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 1199.000000,3809.000000, 0.239417,0.760583, maf-5-some-pop 608 chr1 3052637 3052638 rs141340477 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 700.000000,4308.000000, 0.139776,0.860224, 608 chr1 3052928 3052929 rs72846819 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 703.000000,4305.000000, 0.140375,0.859625, maf-5-some-pop,maf-5-all-pops 608 chr1 3053029 3053030 rs4648364 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3690.000000,1318.000000, 0.736821,0.263179, maf-5-some-pop,maf-5-all-pops 608 chr1 3053162 3053163 rs35794895 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop 608 chr1 3053504 3053505 rs12060066 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 608 chr1 3053730 3053731 rs76880169 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop,maf-5-all-pops 608 chr1 3053956 3053957 rs12741594 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP, 2 A,T, 4837.000000,171.000000, 0.965855,0.034145, 608 chr1 3053967 3053968 rs61759160 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 608 chr1 3054223 3054224 rs57081549 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,TISHKOFF, 2 A,T, 4951.000000,57.000000, 0.988618,0.011382, 608 chr1 3054424 3054425 rs76650675 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 190.000000,4818.000000, 0.037939,0.962061, 608 chr1 3054488 3054489 rs35877876 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 608 chr1 3054745 3054746 rs116252249 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 608 chr1 3054784 3054785 rs57655556 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 608 chr1 3055011 3055012 rs76354874 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 375.000000,4633.000000, 0.074880,0.925120, maf-5-some-pop 608 chr1 3055484 3055485 rs143390126 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF,WARNICH_LAB, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 608 chr1 3055490 3055491 rs12022644 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1180.000000,3828.000000, 0.235623,0.764377, maf-5-some-pop 608 chr1 3055620 3055621 rs10797379 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4013.000000,995.000000, 0.801318,0.198682, maf-5-some-pop 608 chr1 3055746 3055747 rs78369601 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1028.000000,3980.000000, 0.205272,0.794728, maf-5-some-pop,maf-5-all-pops 608 chr1 3055875 3055876 rs10797380 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1577.000000,3431.000000, 0.314896,0.685104, maf-5-some-pop,maf-5-all-pops 608 chr1 3056150 3056151 rs377034282 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 608 chr1 3056206 3056207 rs57522453 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3824.000000,1184.000000, 0.763578,0.236422, maf-5-some-pop 608 chr1 3056222 3056222 rs35271327 0 + - - -/T genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,ABI,BL,EVA-GONL,LUNTER, 2 -,T, 4853.000000,155.000000, 0.969050,0.030950, 608 chr1 3056252 3056253 rs12060265 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1313.000000,3695.000000, 0.262181,0.737819, maf-5-some-pop,maf-5-all-pops 608 chr1 3056283 3056284 rs116347937 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 608 chr1 3056528 3056529 rs78468488 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 608 chr1 3056601 3056602 rs189719496 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 608 chr1 3056648 3056649 rs7354964 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1478.000000,3530.000000, 0.295128,0.704872, maf-5-some-pop,maf-5-all-pops 608 chr1 3056914 3056915 rs74050130 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, 608 chr1 3057307 3057308 rs147576271 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 608 chr1 3057479 3057480 rs12739776 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 G,T, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop,maf-5-all-pops 608 chr1 3057560 3057561 rs35965914 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 241.000000,4767.000000, 0.048123,0.951877, maf-5-some-pop,maf-5-all-pops 608 chr1 3057660 3057661 rs7538096 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2591.000000,2417.000000, 0.517372,0.482628, maf-5-some-pop,maf-5-all-pops,microattr-tpa 608 chr1 3057749 3057750 rs79569864 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 608 chr1 3057787 3057788 rs78471435 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 572.000000,4436.000000, 0.114217,0.885783, maf-5-some-pop,maf-5-all-pops 608 chr1 3057821 3057822 rs12729276 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 G,T, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 608 chr1 3058194 3058195 rs75856693 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 608 chr1 3058248 3058249 rs2817183 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4183.000000,825.000000, 0.835264,0.164736, maf-5-some-pop,maf-5-all-pops 608 chr1 3058369 3058370 rs2817184 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1502.000000,3506.000000, 0.299920,0.700080, maf-5-some-pop 608 chr1 3058448 3058449 rs78889215 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop,maf-5-all-pops 608 chr1 3058913 3058914 rs12120884 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop,maf-5-all-pops 608 chr1 3058920 3058921 rs12123885 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop,maf-5-all-pops 608 chr1 3059066 3059067 rs12120940 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop,maf-5-all-pops 608 chr1 3059070 3059071 rs12120941 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop,maf-5-all-pops 608 chr1 3059177 3059178 rs12123995 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop,maf-5-all-pops 608 chr1 3059427 3059428 rs36012988 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop,maf-5-all-pops 608 chr1 3059609 3059610 rs12739934 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 319.000000,4689.000000, 0.063698,0.936302, maf-5-some-pop,maf-5-all-pops 608 chr1 3060147 3060148 rs150789978 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, 608 chr1 3060180 3060181 rs6684093 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3258.000000,1750.000000, 0.650559,0.349441, 608 chr1 3060335 3060336 rs112481112 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, 608 chr1 3060555 3060556 rs12563417 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop,maf-5-all-pops 608 chr1 3061204 3061205 rs12757205 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop,maf-5-all-pops 608 chr1 3061229 3061230 rs12750175 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop,maf-5-all-pops 608 chr1 3061278 3061279 rs12737832 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP,SSMP, 2 C,T, 4667.000000,341.000000, 0.931909,0.068091, maf-5-some-pop,maf-5-all-pops 608 chr1 3061282 3061283 rs1875449 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1575.000000,3433.000000, 0.314497,0.685503, maf-5-some-pop,maf-5-all-pops 608 chr1 3061319 3061320 rs74050131 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 608 chr1 3061412 3061413 rs12722983 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 G,T, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop,maf-5-all-pops 608 chr1 3061510 3061511 rs12723134 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop,maf-5-all-pops 608 chr1 3061552 3061553 rs12738379 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop,maf-5-all-pops 608 chr1 3061562 3061563 rs12750690 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 373.000000,4635.000000, 0.074481,0.925519, maf-5-some-pop,maf-5-all-pops 608 chr1 3061654 3061655 rs2651909 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,SC_JCM, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop 608 chr1 3061817 3061818 rs145135449 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WARNICH_LAB, 2 G,T, 52.000000,4956.000000, 0.010383,0.989617, 608 chr1 3062227 3062228 rs35602399 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4708.000000,300.000000, 0.940096,0.059904, maf-5-some-pop 608 chr1 3062314 3062315 rs117130095 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 608 chr1 3062332 3062333 rs112309464 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 608 chr1 3062360 3062361 rs2817185 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4053.000000,955.000000, 0.809305,0.190695, maf-5-some-pop 608 chr1 3062370 3062371 rs61602151 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop,maf-5-all-pops 608 chr1 3062453 3062454 rs78117789 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 310.000000,4698.000000, 0.061901,0.938099, maf-5-some-pop,maf-5-all-pops 608 chr1 3062462 3062463 rs116601578 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 123.000000,4885.000000, 0.024561,0.975439, 608 chr1 3062494 3062495 rs2651910 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 471.000000,4537.000000, 0.094049,0.905950, maf-5-some-pop,maf-5-all-pops 608 chr1 3062564 3062565 rs2817186 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP, 2 C,T, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop,maf-5-all-pops 608 chr1 3062684 3062685 rs12029725 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 975.000000,4033.000000, 0.194688,0.805312, maf-5-some-pop,maf-5-all-pops 608 chr1 3062782 3062783 rs34155367 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,C, 4920.000000,88.000000, 0.982428,0.017572, 608 chr1 3062838 3062839 rs74808770 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop,maf-5-all-pops 608 chr1 3062844 3062845 rs10909885 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4343.000000,665.000000, 0.867212,0.132788, maf-5-some-pop,maf-5-all-pops 608 chr1 3062874 3062875 rs2817187 0 + G G G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3981.000000,1027.000000, 0.794928,0.205072, maf-5-some-pop,maf-5-all-pops 608 chr1 3062908 3062909 rs79155405 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4216.000000,792.000000, 0.841853,0.158147, maf-5-some-pop,maf-5-all-pops 608 chr1 3063007 3063008 rs75467184 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop,maf-5-all-pops 608 chr1 3063217 3063218 rs147201817 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 608 chr1 3063249 3063250 rs140469881 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 608 chr1 3063250 3063251 rs144330171 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, 608 chr1 3063429 3063430 rs12030432 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SC_SNP,SSMP, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, 608 chr1 3063482 3063483 rs56166630 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,HGSV, 2 G,T, 4906.000000,102.000000, 0.979633,0.020367, 608 chr1 3063510 3063511 rs200094642 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 53.000000,4955.000000, 0.010583,0.989417, 608 chr1 3063564 3063565 rs56813547 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP, 2 C,T, 1664.000000,3344.000000, 0.332268,0.667732, maf-5-some-pop,maf-5-all-pops 608 chr1 3063577 3063578 rs78274103 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,PJP,SSMP, 2 A,G, 3122.000000,1886.000000, 0.623403,0.376597, maf-5-some-pop 608 chr1 3063594 3063595 rs116509502 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,maf-5-all-pops 608 chr1 3063641 3063642 rs577239215 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4895.000000,113.000000, 0.977436,0.022564, 608 chr1 3063672 3063673 rs112725170 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 608 chr1 3063712 3063713 rs79538554 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop,maf-5-all-pops 608 chr1 3063731 3063732 rs59549179 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 608 chr1 3063904 3063904 rs146669229 0 + - - -/CTGG genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CTGG, 4865.000000,143.000000, 0.971446,0.028554, 608 chr1 3064090 3064091 rs112540077 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop,maf-5-all-pops 608 chr1 3064192 3064193 rs56282707 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 608 chr1 3064419 3064420 rs78117481 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 4793.000000,215.000000, 0.957069,0.042931, maf-5-some-pop,maf-5-all-pops 608 chr1 3064587 3064587 rs57795441 0 + - - -/TTTGAGG genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,LUNTER,TISHKOFF, 2 -,TTTGAGG, 3362.000000,1646.000000, 0.671326,0.328674, 608 chr1 3064625 3064626 rs11487244 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,HGSV,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4534.000000,474.000000, 0.905351,0.094649, maf-5-some-pop,maf-5-all-pops 608 chr1 3064756 3064757 rs74496309 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4793.000000,215.000000, 0.957069,0.042931, maf-5-some-pop,maf-5-all-pops 608 chr1 3065259 3065262 rs78104618 0 + AGC AGC -/AGC genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AGC, 215.000000,4793.000000, 0.042931,0.957069, 608 chr1 3065279 3065280 rs114150053 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 608 chr1 3065567 3065568 rs61759161 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 3893.000000,1115.000000, 0.777356,0.222644, maf-5-some-pop 608 chr1 3065935 3065936 rs75555620 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, 608 chr1 3066393 3066394 rs142553140 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 608 chr1 3066509 3066510 rs75427481 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4793.000000,215.000000, 0.957069,0.042931, maf-5-some-pop,maf-5-all-pops 608 chr1 3066604 3066605 rs78526512 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4793.000000,215.000000, 0.957069,0.042931, maf-5-some-pop,maf-5-all-pops 608 chr1 3066760 3066761 rs10909886 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3847.000000,1161.000000, 0.768171,0.231829, maf-5-some-pop 608 chr1 3066838 3066839 rs115328398 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop,maf-5-all-pops 608 chr1 3067331 3067332 rs77715459 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 215.000000,4793.000000, 0.042931,0.957069, maf-5-some-pop,maf-5-all-pops 608 chr1 3067332 3067333 rs74050137 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 608 chr1 3067548 3067549 rs187216898 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 117.000000,4891.000000, 0.023363,0.976637, 608 chr1 3067549 3067549 rs567009962 0 + - - -/G genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,G, 4941.000000,67.000000, 0.986621,0.013379, 608 chr1 3067576 3067577 rs140669060 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 253.000000,4755.000000, 0.050519,0.949481, 608 chr1 3067704 3067705 rs9729248 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 582.000000,4426.000000, 0.116214,0.883786, maf-5-some-pop 608 chr1 3067781 3067782 rs75974700 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, 608 chr1 3068645 3068646 rs35005996 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 581.000000,4427.000000, 0.116014,0.883986, maf-5-some-pop 608 chr1 3068872 3068884 rs556148608 0 + CATCCATCCATC CATCCATCCATC -/CATCCATCCATC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CATCCATCCATC, 54.000000,4954.000000, 0.010783,0.989217, 608 chr1 3068953 3068969 rs200264803 0 + ATCCATCCATCCATTT ATCCATCCATCCATTT -/ATCCATCCATCCATTT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,ATCCATCCATCCATTT, 1392.000000,3616.000000, 0.277955,0.722045, 608 chr1 3069031 3069032 rs114399907 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 608 chr1 3070373 3070374 rs78241606 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop,maf-5-all-pops 608 chr1 3070633 3070634 rs207195 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3071016 3071017 rs1736517 0 - C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 608 chr1 3071097 3071098 rs57763333 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 C,G, 811.000000,4197.000000, 0.161941,0.838059, maf-5-some-pop,maf-5-all-pops 608 chr1 3071908 3071909 rs75437995 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4355.000000,653.000000, 0.869609,0.130391, maf-5-some-pop,maf-5-all-pops 608 chr1 3071949 3071950 rs74901824 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop,maf-5-all-pops 608 chr1 3072481 3072482 rs10797381 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1135.000000,3873.000000, 0.226637,0.773363, maf-5-some-pop 608 chr1 3072691 3072692 rs731031 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2225.000000,2783.000000, 0.444289,0.555711, maf-5-some-pop,maf-5-all-pops 608 chr1 3072955 3072956 rs16823409 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4591.000000,417.000000, 0.916733,0.083267, maf-5-some-pop 608 chr1 3073554 3073555 rs207200 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WUGSC_SSAHASNP, 2 C,T, 3524.000000,1484.000000, 0.703674,0.296326, maf-5-some-pop 608 chr1 3073599 3073600 rs150538185 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 608 chr1 3073751 3073752 rs12731053 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 309.000000,4699.000000, 0.061701,0.938299, maf-5-some-pop 608 chr1 3073769 3073770 rs79886198 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop,maf-5-all-pops 608 chr1 3073979 3073980 rs118067311 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 G,T, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,maf-5-all-pops 608 chr1 3075369 3075370 rs145436284 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 298.000000,4710.000000, 0.059505,0.940495, 608 chr1 3075596 3075597 rs10218452 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 3874.000000,1134.000000, 0.773562,0.226438, maf-5-some-pop,maf-5-all-pops 608 chr1 3075988 3075989 rs77409214 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4705.000000,303.000000, 0.939497,0.060503, maf-5-some-pop 608 chr1 3076147 3076148 rs80117053 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 303.000000,4705.000000, 0.060503,0.939497, maf-5-some-pop 608 chr1 3076227 3076228 rs76412055 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop,maf-5-all-pops 608 chr1 3076242 3076243 rs78646922 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4705.000000,303.000000, 0.939497,0.060503, maf-5-some-pop 608 chr1 3077235 3077236 rs76645787 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 302.000000,4706.000000, 0.060304,0.939696, maf-5-some-pop 608 chr1 3077375 3077376 rs146202477 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 608 chr1 3077513 3077514 rs12082960 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SC_SNP,TISHKOFF, 2 C,T, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop 608 chr1 3077751 3077752 rs74050140 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 608 chr1 3077818 3077822 rs139952356 0 + ACAC ACAC -/ACAC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,ACAC, 88.000000,4920.000000, 0.017572,0.982428, 608 chr1 3078585 3078586 rs144866420 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 608 chr1 3078722 3078723 rs74050141 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 608 chr1 3078728 3078729 rs79063099 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4601.000000,407.000000, 0.918730,0.081270, maf-5-some-pop,maf-5-all-pops 608 chr1 3078948 3078949 rs12084545 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop,maf-5-all-pops 608 chr1 3078952 3078953 rs75051131 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop,maf-5-all-pops 608 chr1 3079079 3079080 rs72846831 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 86.000000,4922.000000, 0.017173,0.982827, 608 chr1 3079166 3079167 rs79966817 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4601.000000,407.000000, 0.918730,0.081270, maf-5-some-pop 608 chr1 3079170 3079171 rs74943250 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4601.000000,407.000000, 0.918730,0.081270, maf-5-some-pop 608 chr1 3079288 3079289 rs71634319 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HUMANGENOME_JCVI,SSMP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 608 chr1 3079705 3079706 rs531327367 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 3679.000000,1329.000000, 0.734625,0.265375, 608 chr1 3079709 3079713 rs201861669 0 + ATGG ATGG -/ATGG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,SSMP, 2 -,ATGG, 3679.000000,1329.000000, 0.734625,0.265375, 608 chr1 3079836 3079837 rs7513346 0 + G G C/G genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.48 0.09798 intron exact 1 10 ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 4.000000,6.000000, 0.400000,0.600000, 608 chr1 3079856 3079857 rs527520228 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 608 chr1 3079884 3079885 rs1736523 0 - C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 608 chr1 3079993 3079994 rs76042083 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop,maf-5-all-pops 608 chr1 3080085 3080086 rs77686822 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 443.000000,4565.000000, 0.088459,0.911542, maf-5-some-pop,maf-5-all-pops 608 chr1 3080497 3080498 rs79135020 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4343.000000,665.000000, 0.867212,0.132788, maf-5-some-pop 608 chr1 3080939 3080940 rs1736522 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 608 chr1 3081045 3081046 rs76892092 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 608 chr1 3081374 3081375 rs116609258 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 608 chr1 3081404 3081405 rs35564283 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ABI,ENSEMBL,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 608 chr1 3081716 3081717 rs116492928 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, maf-5-some-pop,maf-5-all-pops 608 chr1 3081761 3081762 rs117719590 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 415.000000,4593.000000, 0.082867,0.917133, maf-5-some-pop,maf-5-all-pops 608 chr1 3081802 3081803 rs146744082 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4658.000000,350.000000, 0.930112,0.069888, 608 chr1 3081822 3081823 rs552830293 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, 608 chr1 3081967 3081968 rs140795880 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 229.000000,4779.000000, 0.045727,0.954273, 608 chr1 3082092 3082093 rs34874735 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,EVA-GONL,GMI,SSMP, 2 G,T, 499.000000,4509.000000, 0.099641,0.900359, 608 chr1 3082130 3082131 rs182035400 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 156.000000,4852.000000, 0.031150,0.968850, 608 chr1 3082236 3082237 rs112682827 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 G,T, 1206.000000,3802.000000, 0.240815,0.759185, 608 chr1 3082250 3082251 rs144090205 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 3295.000000,1713.000000, 0.657947,0.342053, 608 chr1 3082341 3082342 rs141476334 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 3302.000000,1706.000000, 0.659345,0.340655, 608 chr1 3082365 3082366 rs75504261 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SSMP, 2 A,T, 7.000000,3.000000, 0.700000,0.300000, 608 chr1 3082413 3082414 rs79574235 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,SSMP, 2 A,T, 2770.000000,2238.000000, 0.553115,0.446885, 608 chr1 3082466 3082467 rs370714758 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 631.000000,4377.000000, 0.125998,0.874002, 608 chr1 3082471 3082472 rs566390443 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 76.000000,4932.000000, 0.015176,0.984824, 608 chr1 3082490 3082491 rs72550022 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BGI, 2 C,T, 531.000000,4477.000000, 0.106030,0.893970, 608 chr1 3082495 3082496 rs577948666 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 1566.000000,3442.000000, 0.312700,0.687300, 608 chr1 3082498 3082499 rs537085008 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 3442.000000,1566.000000, 0.687300,0.312700, 608 chr1 3082500 3082500 rs112663434 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BUSHMAN, 2 -,A, 3442.000000,1566.000000, 0.687300,0.312700, 608 chr1 3082502 3082503 rs181546171 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 3416.000000,1592.000000, 0.682109,0.317891, 608 chr1 3082533 3082534 rs116254400 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop,maf-5-all-pops 608 chr1 3082638 3082639 rs74975606 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,SSMP, 2 C,T, 4458.000000,550.000000, 0.890176,0.109824, maf-5-some-pop,maf-5-all-pops 608 chr1 3082790 3082791 rs79429925 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop,maf-5-all-pops 608 chr1 3083245 3083246 rs2817126 0 + T T G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2553.000000,2455.000000, 0.509784,0.490216, maf-5-some-pop,maf-5-all-pops 608 chr1 3083293 3083294 rs12080488 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4473.000000,535.000000, 0.893171,0.106829, maf-5-some-pop,maf-5-all-pops 608 chr1 3083380 3083381 rs79628785 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop,maf-5-all-pops 608 chr1 3083934 3083935 rs78987058 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4587.000000,421.000000, 0.915935,0.084065, maf-5-some-pop,maf-5-all-pops 608 chr1 3084164 3084165 rs369397176 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4677.000000,331.000000, 0.933906,0.066094, 608 chr1 3084168 3084169 rs538750240 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4677.000000,331.000000, 0.933906,0.066094, 608 chr1 3084169 3084170 rs57159341 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4127.000000,881.000000, 0.824081,0.175919, 608 chr1 3084172 3084173 rs55658104 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 G,T, 19.000000,101.000000, 0.158333,0.841667, maf-5-some-pop,maf-5-all-pops 608 chr1 3084224 3084225 rs187403781 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4642.000000,366.000000, 0.926917,0.073083, 608 chr1 3084866 3084867 rs71580204 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,HUMANGENOME_JCVI,SSMP, 2 -,T, 1884.000000,3124.000000, 0.376198,0.623802, 608 chr1 3085185 3085186 rs56304645 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3609.000000,1399.000000, 0.720647,0.279353, maf-5-some-pop,maf-5-all-pops 608 chr1 3085363 3085364 rs138903741 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 68.000000,4940.000000, 0.013578,0.986422, 608 chr1 3085659 3085660 rs115877911 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop,maf-5-all-pops 608 chr1 3085788 3085789 rs59663420 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,GMI,HGSV,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 537.000000,4471.000000, 0.107228,0.892772, maf-5-some-pop,maf-5-all-pops 608 chr1 3086229 3086230 rs35796968 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 300.000000,4708.000000, 0.059904,0.940096, maf-5-some-pop,maf-5-all-pops 608 chr1 3086300 3086301 rs77846248 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop,maf-5-all-pops 608 chr1 3086396 3086397 rs2651934 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1215.000000,3793.000000, 0.242612,0.757388, maf-5-some-pop,maf-5-all-pops 608 chr1 3086463 3086464 rs7518255 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1146.000000,3862.000000, 0.228834,0.771166, maf-5-some-pop 608 chr1 3086495 3086496 rs2651935 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3956.000000,1052.000000, 0.789936,0.210064, maf-5-some-pop,maf-5-all-pops 608 chr1 3086526 3086527 rs144781354 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, 608 chr1 3086628 3086628 rs567097379 0 + - - -/TTC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TTC, 4707.000000,301.000000, 0.939896,0.060104, 608 chr1 3086801 3086802 rs78335238 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 608 chr1 3086827 3086828 rs114535327 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop 608 chr1 3086852 3086853 rs71503050 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 C,G, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop 608 chr1 3086933 3086934 rs71503051 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop,maf-5-all-pops 608 chr1 3087183 3087184 rs71634324 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 C,T, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop 608 chr1 3087717 3087718 rs75314382 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 608 chr1 3088053 3088054 rs34456377 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 608 chr1 3088130 3088131 rs140007248 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 608 chr1 3088159 3088160 rs144162869 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 608 chr1 3088247 3088248 rs75881463 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop,maf-5-all-pops 608 chr1 3088360 3088361 rs150577273 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 608 chr1 3088575 3088576 rs78526618 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 608 chr1 3088741 3088742 rs2651936 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1293.000000,3715.000000, 0.258187,0.741813, maf-5-some-pop,maf-5-all-pops 608 chr1 3088942 3088943 rs2817128 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 608 chr1 3089059 3089060 rs2817129 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3716.000000,1292.000000, 0.742013,0.257987, maf-5-some-pop,maf-5-all-pops 608 chr1 3089111 3089112 rs77141019 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,GMI, 2 A,C, 232.000000,4776.000000, 0.046326,0.953674, 608 chr1 3089136 3089137 rs79551700 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop 608 chr1 3089153 3089154 rs35019643 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,ENSEMBL,EVA-GONL,TISHKOFF, 2 C,G, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop 608 chr1 3089201 3089202 rs34503920 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4735.000000,273.000000, 0.945487,0.054513, maf-5-some-pop,maf-5-all-pops 608 chr1 3089338 3089339 rs34030409 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop,maf-5-all-pops 608 chr1 3089372 3089373 rs78246987 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop,maf-5-all-pops 608 chr1 3089447 3089448 rs36014570 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop 608 chr1 3089539 3089540 rs34478711 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop 608 chr1 3089549 3089550 rs71634325 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop 608 chr1 3089667 3089668 rs35122869 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 608 chr1 3089683 3089684 rs115664690 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 608 chr1 3090292 3090293 rs78580116 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 608 chr1 3090336 3090337 rs114106344 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop 608 chr1 3090349 3090350 rs115766302 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF, 2 C,G, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 608 chr1 3090353 3090354 rs114054273 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 608 chr1 3090767 3090768 rs36020329 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop 608 chr1 3090988 3090989 rs116291011 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 608 chr1 3090990 3090991 rs35599586 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 C,T, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 608 chr1 3091438 3091439 rs72846839 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop 608 chr1 3091478 3091479 rs142870698 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 608 chr1 3091586 3091587 rs61759167 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3888.000000,1120.000000, 0.776358,0.223642, maf-5-some-pop,maf-5-all-pops 608 chr1 3091965 3091966 rs34384830 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4779.000000,229.000000, 0.954273,0.045727, 608 chr1 3092106 3092107 rs138816116 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 608 chr1 3092135 3092136 rs61759168 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 608 chr1 3092330 3092331 rs116514394 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 608 chr1 3092547 3092547 rs577092638 0 + - - -/CAGC genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,CAGC, 4070.000000,938.000000, 0.812700,0.187300, 608 chr1 3092689 3092690 rs12756210 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop 608 chr1 3093174 3093175 rs59149776 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 A,G, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop 608 chr1 3093297 3093298 rs548777555 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, 608 chr1 3093301 3093302 rs12038657 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,PJP,SC_SNP, 2 A,G, 2254.000000,2754.000000, 0.450080,0.549920, 608 chr1 3093327 3093328 rs111063485 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,T, 3779.000000,1229.000000, 0.754593,0.245407, maf-5-some-pop,maf-5-all-pops 608 chr1 3093331 3093332 rs115682483 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop,maf-5-all-pops 608 chr1 3093607 3093608 rs80190252 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,PJP,SSMP,TISHKOFF, 2 C,T, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop,maf-5-all-pops 608 chr1 3093749 3093750 rs2817131 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3711.000000,1297.000000, 0.741014,0.258986, maf-5-some-pop,maf-5-all-pops 608 chr1 3093889 3093890 rs72846841 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop,maf-5-all-pops 608 chr1 3093936 3093937 rs145058497 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 608 chr1 3094292 3094293 rs74874070 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4931.000000,77.000000, 0.984625,0.015375, 608 chr1 3094396 3094407 rs112402500 0 + GTTTAGATACT GTTTAGATACT -/GTTTAGATACT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,PJP, 2 -,GTTTAGATACT, 1118.000000,3890.000000, 0.223243,0.776757, 608 chr1 3094440 3094441 rs74850540 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 608 chr1 3094549 3094550 rs2242433 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,maf-5-all-pops 608 chr1 3094671 3094672 rs12745073 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3657.000000,1351.000000, 0.730232,0.269768, maf-5-some-pop,maf-5-all-pops 608 chr1 3094707 3094708 rs12737500 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop 608 chr1 3094830 3094831 rs17390167 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop 608 chr1 3094864 3094865 rs78526255 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4639.000000,369.000000, 0.926318,0.073682, maf-5-some-pop 608 chr1 3094955 3094956 rs35483085 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop 608 chr1 3094988 3094989 rs71503052 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop 608 chr1 3095088 3095089 rs72846843 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 496.000000,4512.000000, 0.099041,0.900958, maf-5-some-pop,maf-5-all-pops 608 chr1 3095490 3095491 rs12750165 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 608 chr1 3095630 3095631 rs12727713 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop 608 chr1 3096017 3096018 rs34715337 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 608 chr1 3096086 3096087 rs113723056 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 608 chr1 3096212 3096213 rs78085061 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,maf-5-all-pops 608 chr1 3096354 3096355 rs868718 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop,maf-5-all-pops 608 chr1 3096477 3096478 rs2817132 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3808.000000,1200.000000, 0.760383,0.239617, maf-5-some-pop,maf-5-all-pops 608 chr1 3096726 3096727 rs75969074 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop 608 chr1 3096924 3096925 rs11587518 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,T, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop,maf-5-all-pops 608 chr1 3097050 3097051 rs28594467 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3915.000000,1093.000000, 0.781749,0.218251, maf-5-some-pop 608 chr1 3097072 3097073 rs12733843 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP, 2 A,G, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop 608 chr1 3097110 3097111 rs72630981 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, maf-5-some-pop,maf-5-all-pops 608 chr1 3097298 3097298 rs368474815 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,T, 4589.000000,419.000000, 0.916334,0.083666, 608 chr1 3097312 3097313 rs34468831 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,GMI,LUNTER,SSMP, 2 -,A, 1172.000000,3836.000000, 0.234026,0.765974, 608 chr1 3097423 3097424 rs28576654 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 A,G, 3757.000000,1251.000000, 0.750200,0.249800, 608 chr1 3097438 3097439 rs112750269 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP, 2 C,T, 4476.000000,532.000000, 0.893770,0.106230, 608 chr1 3097497 3097498 rs77036820 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,GMI, 2 A,T, 4784.000000,224.000000, 0.955272,0.044728, 608 chr1 3097498 3097499 rs376627512 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, 608 chr1 3097508 3097509 rs61759173 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,GMI,ILLUMINA-UK,SSMP, 2 C,T, 3922.000000,1086.000000, 0.783147,0.216853, 608 chr1 3097525 3097527 rs538692098 0 + AC AC -/AC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AC, 230.000000,4778.000000, 0.045927,0.954073, 608 chr1 3097549 3097550 rs114512952 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 608 chr1 3097582 3097583 rs367561812 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 224.000000,4784.000000, 0.044728,0.955272, 608 chr1 3097647 3097648 rs549408196 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4873.000000,135.000000, 0.973043,0.026957, 608 chr1 3097651 3097652 rs375492774 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, 608 chr1 3097657 3097669 rs142464551 0 + ACACGCAGTCTT ACACGCAGTCTT -/ACACGCAGTCTT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 -,ACACGCAGTCTT, 1887.000000,3121.000000, 0.376797,0.623203, 608 chr1 3097687 3097688 rs571713117 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 104.000000,4904.000000, 0.020767,0.979233, 608 chr1 3097689 3097690 rs78259859 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP, 2 A,G, 4397.000000,611.000000, 0.877995,0.122005, 608 chr1 3097715 3097716 rs78799605 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,GMI,SSMP, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, 608 chr1 3097729 3097730 rs78546540 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 228.000000,4780.000000, 0.045527,0.954473, 608 chr1 3097747 3097748 rs112242973 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,GMI,SSMP, 2 A,G, 1166.000000,3842.000000, 0.232827,0.767173, 608 chr1 3097886 3097887 rs80350576 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,GMI,ILLUMINA-UK, 2 A,G, 2941.000000,2067.000000, 0.587260,0.412740, 608 chr1 3097923 3097924 rs111568452 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,BUSHMAN,GMI,MPI_MOLGEN, 2 A,G, 2674.000000,2334.000000, 0.533946,0.466054, 608 chr1 3097989 3097990 rs181075702 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,MPI_MOLGEN, 2 A,G, 1512.000000,3496.000000, 0.301917,0.698083, 608 chr1 3098009 3098011 rs367823022 0 + AC AC -/AC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,BILGI_BIOE, 2 -,AC, 1285.000000,3723.000000, 0.256589,0.743411, 608 chr1 3098050 3098051 rs373108800 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 C,T, 1952.000000,3056.000000, 0.389776,0.610224, 608 chr1 3098051 3098052 rs77999053 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,ILLUMINA-UK, 2 A,G, 1952.000000,3056.000000, 0.389776,0.610224, 608 chr1 3098345 3098346 rs111203496 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4923.000000,85.000000, 0.983027,0.016973, 608 chr1 3098359 3098360 rs34886760 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,GMI,ILLUMINA,ILLUMINA-UK, 2 A,G, 2576.000000,2432.000000, 0.514377,0.485623, 608 chr1 3098385 3098386 rs199691852 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 G,T, 4670.000000,338.000000, 0.932508,0.067492, 608 chr1 3098488 3098489 rs61759178 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,GMI,ILLUMINA,ILLUMINA-UK,SSMP, 2 C,T, 1102.000000,3906.000000, 0.220048,0.779952, 608 chr1 3098570 3098571 rs79366678 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 4768.000000,240.000000, 0.952077,0.047923, maf-5-some-pop,maf-5-all-pops 608 chr1 3098628 3098629 rs72846846 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4481.000000,527.000000, 0.894768,0.105232, maf-5-some-pop 608 chr1 3098643 3098644 rs74766941 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,MPI_MOLGEN,SSMP,TISHKOFF, 2 A,G, 709.000000,4299.000000, 0.141573,0.858427, maf-5-some-pop,maf-5-all-pops 608 chr1 3098714 3098715 rs2817134 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop,maf-5-all-pops 608 chr1 3098840 3098841 rs78777664 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop,maf-5-all-pops 608 chr1 3098845 3098846 rs74753072 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 225.000000,4783.000000, 0.044928,0.955072, maf-5-some-pop,maf-5-all-pops 608 chr1 3098900 3098901 rs2817135 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4008.000000,1000.000000, 0.800319,0.199681, maf-5-some-pop,maf-5-all-pops 608 chr1 3098956 3098957 rs79479599 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop,maf-5-all-pops 608 chr1 3099080 3099081 rs114984072 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 608 chr1 3099137 3099138 rs1393064 0 - G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 608 chr1 3099321 3099322 rs78944467 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 608 chr1 3099362 3099363 rs112713649 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop,maf-5-all-pops 608 chr1 3099606 3099607 rs10909891 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,SC_SNP, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, 608 chr1 3099634 3099635 rs72846849 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4483.000000,525.000000, 0.895168,0.104832, maf-5-some-pop 608 chr1 3100562 3100562 rs148924497 0 + - - -/C genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 4687.000000,321.000000, 0.935903,0.064097, 608 chr1 3100826 3100827 rs11810287 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop 608 chr1 3101330 3101331 rs112201322 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, 608 chr1 3101732 3101733 rs9660914 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2072.000000,2936.000000, 0.413738,0.586262, maf-5-some-pop,maf-5-all-pops 608 chr1 3101862 3101863 rs2651925 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 608 chr1 3102519 3102520 rs74050163 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA-UK, 2 A,C, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 608 chr1 3103204 3103205 rs114746406 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 608 chr1 3103311 3103312 rs12135062 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3436.000000,1572.000000, 0.686102,0.313898, maf-5-some-pop,maf-5-all-pops 608 chr1 3103383 3103384 rs28636820 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,SSAHASNP, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop,maf-5-all-pops 608 chr1 3103389 3103390 rs142567524 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 69.000000,4939.000000, 0.013778,0.986222, 608 chr1 3103825 3103826 rs4233024 0 + C C C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1157.000000,3851.000000, 0.231030,0.768970, maf-5-some-pop,maf-5-all-pops 608 chr1 3104478 3104479 rs113440265 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 608 chr1 3104935 3104935 rs113512285 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 -,T, 4916.000000,92.000000, 0.981629,0.018371, 608 chr1 3104971 3104972 rs116525159 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 608 chr1 3104998 3104999 rs79612213 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 608 chr1 3105081 3105082 rs2817136 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3606.000000,1402.000000, 0.720048,0.279952, maf-5-some-pop,maf-5-all-pops 608 chr1 3105159 3105160 rs2817137 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3295.000000,1713.000000, 0.657947,0.342053, maf-5-some-pop,maf-5-all-pops 608 chr1 3105275 3105276 rs2817138 0 + T T G/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3698.000000,1310.000000, 0.738419,0.261581, maf-5-some-pop 608 chr1 3105325 3105326 rs74050166 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA-UK, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 608 chr1 3105492 3105493 rs7545618 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 608 chr1 3105504 3105505 rs7529508 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,TISHKOFF,WI_SSAHASNP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 608 chr1 3105765 3105766 rs75872291 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop,maf-5-all-pops 608 chr1 3105890 3105891 rs113220550 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop 608 chr1 3105908 3105909 rs2817139 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop,maf-5-all-pops 608 chr1 3105986 3105987 rs146312703 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, 608 chr1 3106061 3106062 rs7530075 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2669.000000,2339.000000, 0.532947,0.467053, maf-5-some-pop,maf-5-all-pops 608 chr1 3106267 3106268 rs2651917 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 608 chr1 3106304 3106305 rs7545798 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2246.000000,2762.000000, 0.448482,0.551518, maf-5-some-pop,maf-5-all-pops 608 chr1 3106349 3106350 rs74811618 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop,maf-5-all-pops 608 chr1 3106382 3106383 rs7545871 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2249.000000,2759.000000, 0.449081,0.550919, maf-5-some-pop,maf-5-all-pops 608 chr1 3106615 3106616 rs2817140 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 467.000000,4541.000000, 0.093251,0.906749, maf-5-some-pop 608 chr1 3106696 3106697 rs74050168 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA-UK, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 608 chr1 3106800 3106801 rs61759179 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 4222.000000,786.000000, 0.843051,0.156949, 608 chr1 3106810 3106811 rs575610187 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4921.000000,87.000000, 0.982628,0.017372, 608 chr1 3106953 3106954 rs2817141 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop 608 chr1 3107324 3107325 rs114611276 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 608 chr1 3107383 3107384 rs17390461 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 608 chr1 3107385 3107386 rs12139196 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3504.000000,1504.000000, 0.699681,0.300319, maf-5-some-pop,maf-5-all-pops 608 chr1 3107474 3107475 rs116925931 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop,maf-5-all-pops 608 chr1 3107546 3107547 rs60330317 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SSMP, 2 A,G, 1500.000000,3508.000000, 0.299521,0.700479, maf-5-some-pop,maf-5-all-pops 608 chr1 3107554 3107555 rs74761072 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 608 chr1 3107568 3107569 rs117872822 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 608 chr1 3108309 3108310 rs112240988 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 608 chr1 3108388 3108389 rs113493981 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 608 chr1 3108432 3108433 rs78466602 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 608 chr1 3108524 3108525 rs77669305 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop,maf-5-all-pops 608 chr1 3109150 3109151 rs7539775 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2718.000000,2290.000000, 0.542732,0.457268, maf-5-some-pop,maf-5-all-pops 608 chr1 3109281 3109282 rs116822633 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 608 chr1 3109436 3109437 rs150442902 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,T, 188.000000,4820.000000, 0.037540,0.962460, 608 chr1 3109562 3109563 rs75625656 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 608 chr1 3109712 3109713 rs77038162 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 608 chr1 3109862 3109863 rs75445914 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 608 chr1 3110383 3110384 rs117482896 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop,maf-5-all-pops 608 chr1 3110416 3110417 rs2651913 0 - C C C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 608 chr1 3110478 3110479 rs7545395 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop 608 chr1 3110660 3110661 rs77189998 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 608 chr1 3110677 3110678 rs77970146 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4538.000000,470.000000, 0.906150,0.093850, maf-5-some-pop 608 chr1 3110681 3110682 rs80115654 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 150.000000,4858.000000, 0.029952,0.970048, maf-5-some-pop,maf-5-all-pops 608 chr1 3110862 3110863 rs116202027 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 608 chr1 3111118 3111119 rs67620903 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1328.000000,3680.000000, 0.265176,0.734824, maf-5-some-pop,maf-5-all-pops 608 chr1 3111141 3111142 rs189659567 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4941.000000,67.000000, 0.986621,0.013379, 608 chr1 3111183 3111184 rs113960476 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,G, 3745.000000,1263.000000, 0.747804,0.252196, 608 chr1 3111210 3111211 rs113208842 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 C,T, 3961.000000,1047.000000, 0.790935,0.209065, maf-5-some-pop 608 chr1 3111346 3111347 rs72846872 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 G,T, 89.000000,4919.000000, 0.017772,0.982228, 608 chr1 3111655 3111656 rs115153418 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 608 chr1 3111999 3112000 rs75167935 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,maf-5-all-pops 608 chr1 3112277 3112278 rs10909892 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1100.000000,3908.000000, 0.219649,0.780351, maf-5-some-pop,maf-5-all-pops 608 chr1 3112359 3112360 rs61759180 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4274.000000,734.000000, 0.853435,0.146565, maf-5-some-pop,maf-5-all-pops 608 chr1 3112416 3112417 rs10797383 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2321.000000,2687.000000, 0.463458,0.536542, maf-5-some-pop,maf-5-all-pops 608 chr1 3112702 3112703 rs138106840 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 157.000000,4851.000000, 0.031350,0.968650, 608 chr1 3112978 3112979 rs9659245 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop 608 chr1 3113060 3113061 rs140426330 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 608 chr1 3113084 3113085 rs61527361 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 608 chr1 3113117 3113118 rs79122333 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 608 chr1 3113147 3113148 rs7520732 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3071.000000,1937.000000, 0.613219,0.386781, maf-5-some-pop,maf-5-all-pops 608 chr1 3113679 3113680 rs10909895 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1993.000000,3015.000000, 0.397963,0.602037, maf-5-some-pop,maf-5-all-pops 608 chr1 3113736 3113737 rs114146934 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop,maf-5-all-pops 608 chr1 3113817 3113818 rs10909896 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3085.000000,1923.000000, 0.616014,0.383986, maf-5-some-pop,maf-5-all-pops 608 chr1 3114074 3114075 rs74048303 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 608 chr1 3114371 3114372 rs72630991 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop,maf-5-all-pops 608 chr1 3114536 3114537 rs12095357 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4844.000000,164.000000, 0.967252,0.032748, 608 chr1 3114656 3114657 rs74048305 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,C, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 608 chr1 3114717 3114718 rs116205935 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 608 chr1 3114780 3114781 rs139777251 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4940.000000,68.000000, 0.986422,0.013578, 608 chr1 3115039 3115040 rs74427394 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop 608 chr1 3115098 3115099 rs149801568 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 608 chr1 3115190 3115191 rs12091556 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 608 chr1 3115231 3115232 rs10909897 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2661.000000,2347.000000, 0.531350,0.468650, maf-5-some-pop,maf-5-all-pops 608 chr1 3115844 3115845 rs35372326 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP, 2 -,G, 2745.000000,2263.000000, 0.548123,0.451877, 608 chr1 3115852 3115853 rs369494557 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,T, 220.000000,4788.000000, 0.043930,0.956070, 608 chr1 3116264 3116266 rs200067603 0 + GA GA -/GA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,GA, 64.000000,4944.000000, 0.012780,0.987220, 608 chr1 3116360 3116361 rs9659513 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2812.000000,2196.000000, 0.561502,0.438498, maf-5-some-pop 608 chr1 3116410 3116411 rs72846889 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 608 chr1 3116599 3116600 rs905133 0 - G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 608 chr1 3116761 3116775 rs201967971 0 + GGGCCTGGGGAGAG GGGCCTGGGGAGAG -/GGGCCTGGGGAGAG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,GGGCCTGGGGAGAG, 122.000000,4886.000000, 0.024361,0.975639, 608 chr1 3116816 3116817 rs72846890 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 870.000000,4138.000000, 0.173722,0.826278, maf-5-some-pop 608 chr1 3116900 3116900 rs113899911 0 + - - -/T genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP, 2 -,T, 3833.000000,1175.000000, 0.765375,0.234625, 608 chr1 3116976 3116977 rs146186735 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 608 chr1 3117095 3117096 rs139062421 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 608 chr1 3117140 3117141 rs113938370 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 207.000000,4801.000000, 0.041334,0.958666, 608 chr1 3117151 3117152 rs7410915 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, 608 chr1 3117277 3117301 rs138726199 0 + GTGGCCCTCCTGGAAATGCAGAGA GTGGCCCTCCTGGAAATGCAGAGA -/GTGGCCCTCCTGGAAATGCAGAGA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GTGGCCCTCCTGGAAATGCAGAGA, 207.000000,4801.000000, 0.041334,0.958666, 608 chr1 3117439 3117440 rs4418531 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4073.000000,935.000000, 0.813299,0.186701, maf-5-some-pop 608 chr1 3117443 3117444 rs4483351 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4716.000000,292.000000, 0.941693,0.058307, maf-5-some-pop 608 chr1 3117548 3117548 rs5772098 0 + - - -/G genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,ABI,BGI,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 3055.000000,1953.000000, 0.610024,0.389976, 608 chr1 3117628 3117629 rs115944803 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 608 chr1 3117677 3117678 rs12095716 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2564.000000,2444.000000, 0.511981,0.488019, maf-5-some-pop 608 chr1 3117804 3117805 rs74048307 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop,maf-5-all-pops 608 chr1 3117824 3117825 rs74386551 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 608 chr1 3118128 3118129 rs74484450 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, 608 chr1 3118225 3118226 rs72846894 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,SSMP,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 608 chr1 3118300 3118301 rs55994066 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4505.000000,503.000000, 0.899561,0.100439, maf-5-some-pop 608 chr1 3118315 3118316 rs12096975 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop 608 chr1 3118325 3118326 rs12060022 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4335.000000,673.000000, 0.865615,0.134385, maf-5-some-pop 608 chr1 3118379 3118380 rs56087087 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 A,T, 81.000000,4927.000000, 0.016174,0.983826, 608 chr1 3118443 3118444 rs147653409 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 608 chr1 3118509 3118510 rs114616568 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,G, 76.000000,4932.000000, 0.015176,0.984824, 608 chr1 3118674 3118676 rs59512254 0 + GA GA -/GA genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,GA, 1688.000000,3320.000000, 0.337061,0.662939, 608 chr1 3119117 3119118 rs58819932 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 822.000000,4186.000000, 0.164137,0.835863, maf-5-some-pop,maf-5-all-pops 608 chr1 3119488 3119489 rs11577655 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3234.000000,1774.000000, 0.645767,0.354233, maf-5-some-pop,maf-5-all-pops 608 chr1 3119504 3119505 rs55688909 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB, 2 G,T, 56.000000,4952.000000, 0.011182,0.988818, 608 chr1 3119516 3119517 rs113382454 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA, 2 A,C, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 608 chr1 3119728 3119729 rs4308918 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 814.000000,4194.000000, 0.162540,0.837460, maf-5-some-pop 608 chr1 3119981 3119982 rs551709779 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 76.000000,4932.000000, 0.015176,0.984824, 608 chr1 3120019 3120020 rs145939419 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4922.000000,86.000000, 0.982827,0.017173, 608 chr1 3120081 3120082 rs150812451 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,LUNTER,SSMP, 2 -,T, 191.000000,4817.000000, 0.038139,0.961861, 608 chr1 3120129 3120130 rs7521730 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4130.000000,878.000000, 0.824681,0.175319, maf-5-some-pop,maf-5-all-pops 608 chr1 3120146 3120147 rs140417015 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 879.000000,4129.000000, 0.175519,0.824481, 608 chr1 3120153 3120154 rs10909898 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP, 2 C,G, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop,maf-5-all-pops 608 chr1 3120405 3120405 rs201650269 0 + - - -/G genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,G, 4932.000000,76.000000, 0.984824,0.015176, 608 chr1 3120407 3120408 rs10909899 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP, 2 G,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop,maf-5-all-pops 608 chr1 3120573 3120574 rs77733625 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 608 chr1 3120631 3120632 rs4648368 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 608 chr1 3120702 3120703 rs79511910 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4649.000000,359.000000, 0.928315,0.071685, 608 chr1 3121036 3121037 rs77634671 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop,maf-5-all-pops 608 chr1 3121080 3121081 rs116222166 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, 608 chr1 3121876 3121877 rs6663835 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 C,G, 2269.000000,2739.000000, 0.453075,0.546925, maf-5-some-pop,maf-5-all-pops 608 chr1 3121890 3121891 rs115879834 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 608 chr1 3122262 3122263 rs113899766 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 608 chr1 3122320 3122321 rs12028814 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2182.000000,2826.000000, 0.435703,0.564297, maf-5-some-pop 608 chr1 3122459 3122460 rs58322762 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4158.000000,850.000000, 0.830272,0.169728, maf-5-some-pop,maf-5-all-pops 608 chr1 3122564 3122565 rs74048310 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop,maf-5-all-pops 608 chr1 3122565 3122566 rs78423056 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,GMI,SSMP, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 608 chr1 3122637 3122638 rs72846901 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,COMPLETE_GENOMICS,GMI,SSMP, 2 A,G, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,maf-5-all-pops 608 chr1 3122750 3122750 rs144759826 0 + - - -/C genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,EVA-GONL,LUNTER,SSIP, 2 -,C, 4936.000000,72.000000, 0.985623,0.014377, 608 chr1 3122970 3122971 rs74048312 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop,maf-5-all-pops 608 chr1 3123096 3123097 rs115666899 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 608 chr1 3123150 3123151 rs74048313 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 608 chr1 3123189 3123190 rs115188546 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop,maf-5-all-pops 608 chr1 3123229 3123230 rs7552756 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,COMPLETE_GENOMICS,GMI,ILLUMINA,SSMP,WI_SSAHASNP, 2 G,T, 4828.000000,180.000000, 0.964058,0.035942, 608 chr1 3123740 3123741 rs7517083 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop 608 chr1 3123756 3123757 rs111489101 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 608 chr1 3124079 3124080 rs7521987 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3879.000000,1129.000000, 0.774561,0.225439, maf-5-some-pop,maf-5-all-pops 608 chr1 3124154 3124155 rs13328662 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4182.000000,826.000000, 0.835064,0.164936, maf-5-some-pop 608 chr1 3124197 3124198 rs58429922 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3090.000000,1918.000000, 0.617013,0.382987, maf-5-some-pop,maf-5-all-pops 608 chr1 3124448 3124449 rs58858983 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop,maf-5-all-pops 608 chr1 3124529 3124530 rs61681774 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop,maf-5-all-pops 608 chr1 3124633 3124634 rs74996148 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,maf-5-all-pops 608 chr1 3124639 3124640 rs79826532 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop,maf-5-all-pops 608 chr1 3124758 3124759 rs112841831 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 608 chr1 3124930 3124931 rs60118785 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 503.000000,4505.000000, 0.100439,0.899561, maf-5-some-pop 608 chr1 3125080 3125081 rs147303174 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 63.000000,4945.000000, 0.012580,0.987420, 608 chr1 3125090 3125091 rs4648455 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 846.000000,4162.000000, 0.168930,0.831070, 608 chr1 3125237 3125238 rs562478542 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 608 chr1 3125242 3125243 rs530793214 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 390.000000,4618.000000, 0.077875,0.922125, 608 chr1 3125445 3125446 rs4648456 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1716.000000,3292.000000, 0.342652,0.657348, maf-5-some-pop,maf-5-all-pops 608 chr1 3125583 3125584 rs79013696 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 608 chr1 3125960 3125961 rs56154627 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,EVA-GONL,HGSV, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop,maf-5-all-pops 608 chr1 3126089 3126090 rs4376672 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 353.000000,4655.000000, 0.070487,0.929513, maf-5-some-pop,maf-5-all-pops 608 chr1 3126159 3126160 rs59659563 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop,maf-5-all-pops 608 chr1 3126478 3126479 rs7533798 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 634.000000,4374.000000, 0.126597,0.873403, maf-5-some-pop 608 chr1 3126740 3126741 rs58581483 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4514.000000,494.000000, 0.901358,0.098642, maf-5-some-pop 608 chr1 3126945 3126946 rs79197451 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 608 chr1 3127063 3127064 rs60425253 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4267.000000,741.000000, 0.852037,0.147963, maf-5-some-pop,maf-5-all-pops 608 chr1 3127290 3127291 rs75755920 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 608 chr1 3127337 3127338 rs76189606 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 608 chr1 3127689 3127690 rs72848009 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4830.000000,178.000000, 0.964457,0.035543, maf-5-some-pop 608 chr1 3127924 3127925 rs6424068 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3997.000000,1011.000000, 0.798123,0.201877, maf-5-some-pop,maf-5-all-pops 608 chr1 3128067 3128068 rs77386799 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 914.000000,4094.000000, 0.182508,0.817492, maf-5-some-pop 608 chr1 3128236 3128237 rs72848013 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 608 chr1 3128395 3128396 rs4648369 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3348.000000,1660.000000, 0.668530,0.331470, maf-5-some-pop,maf-5-all-pops 608 chr1 3128419 3128420 rs4648370 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 1717.000000,3291.000000, 0.342851,0.657149, maf-5-some-pop,maf-5-all-pops 608 chr1 3128530 3128531 rs4648457 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4074.000000,934.000000, 0.813498,0.186502, maf-5-some-pop,maf-5-all-pops 608 chr1 3129181 3129182 rs11803063 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,C, 2310.000000,2698.000000, 0.461262,0.538738, maf-5-some-pop,maf-5-all-pops 608 chr1 3129342 3129343 rs56175284 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 591.000000,4417.000000, 0.118011,0.881989, maf-5-some-pop,maf-5-all-pops 608 chr1 3129350 3129351 rs115688827 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 608 chr1 3129444 3129445 rs72630993 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, 608 chr1 3129572 3129573 rs60892783 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,APPLERA_GI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 1234.000000,3774.000000, 0.246406,0.753594, maf-5-some-pop,maf-5-all-pops 608 chr1 3129649 3129650 rs116922935 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 608 chr1 3130015 3130016 rs12072073 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2745.000000,2263.000000, 0.548123,0.451877, maf-5-some-pop 608 chr1 3130361 3130362 rs77388252 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,EVA-GONL, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 608 chr1 3131031 3131032 rs10909900 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 753.000000,4255.000000, 0.150359,0.849641, 608 chr1 3131204 3131204 rs149924865 0 + - - -/GA genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GA, 4919.000000,89.000000, 0.982228,0.017772, 608 chr1 3131234 3131235 rs10909901 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2272.000000,2736.000000, 0.453674,0.546326, maf-5-some-pop 608 chr1 3131437 3131438 rs76981837 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 608 chr1 3131737 3131738 rs56090715 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4433.000000,575.000000, 0.885184,0.114816, maf-5-some-pop,maf-5-all-pops 608 chr1 3132129 3132133 rs150705746 0 + CCCT CCCT -/CCCT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CCCT, 56.000000,4952.000000, 0.011182,0.988818, 608 chr1 3132222 3132223 rs115993291 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop,maf-5-all-pops 608 chr1 3132423 3132424 rs2817144 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2740.000000,2268.000000, 0.547125,0.452875, maf-5-some-pop 608 chr1 3133093 3133094 rs79853522 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop,maf-5-all-pops 608 chr1 3133306 3133307 rs16823514 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 369.000000,4639.000000, 0.073682,0.926318, maf-5-some-pop 608 chr1 3133421 3133422 rs2817145 0 + T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2698.000000,2310.000000, 0.538738,0.461262, maf-5-some-pop 608 chr1 3133438 3133439 rs2817146 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3963.000000,1045.000000, 0.791334,0.208666, maf-5-some-pop,maf-5-all-pops 608 chr1 3134136 3134137 rs75426237 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,T, 99.000000,4909.000000, 0.019768,0.980232, 608 chr1 3134330 3134331 rs12124147 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 3979.000000,1029.000000, 0.794529,0.205471, maf-5-some-pop 608 chr1 3134425 3134426 rs116731338 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 608 chr1 3134982 3134983 rs6681876 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3095.000000,1913.000000, 0.618011,0.381989, maf-5-some-pop,maf-5-all-pops 608 chr1 3135054 3135055 rs77699717 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop 608 chr1 3135573 3135574 rs147186449 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 608 chr1 3135612 3135613 rs113617372 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 608 chr1 3136194 3136195 rs79372668 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 348.000000,4660.000000, 0.069489,0.930511, maf-5-some-pop 608 chr1 3136350 3136351 rs145429325 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, 608 chr1 3136465 3136466 rs77144847 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop 608 chr1 3137036 3137037 rs74048326 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 608 chr1 3137198 3137199 rs2817147 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2725.000000,2283.000000, 0.544129,0.455871, maf-5-some-pop 608 chr1 3137674 3137675 rs16823522 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop 608 chr1 3137844 3137845 rs12068579 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop 608 chr1 3138135 3138136 rs2817148 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4123.000000,885.000000, 0.823283,0.176717, maf-5-some-pop 608 chr1 3138557 3138558 rs34313490 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1277.000000,3731.000000, 0.254992,0.745008, maf-5-some-pop,maf-5-all-pops 608 chr1 3139227 3139228 rs2817149 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop 608 chr1 3139527 3139528 rs75754239 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop,maf-5-all-pops 608 chr1 3139581 3139582 rs78024466 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 335.000000,4673.000000, 0.066893,0.933107, maf-5-some-pop,maf-5-all-pops 608 chr1 3139741 3139742 rs2817150 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2721.000000,2287.000000, 0.543331,0.456669, maf-5-some-pop 608 chr1 3140225 3140226 rs112057796 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 G,T, 60.000000,4948.000000, 0.011981,0.988019, 608 chr1 3140246 3140247 rs11804075 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 843.000000,4165.000000, 0.168331,0.831669, maf-5-some-pop 608 chr1 3140320 3140322 rs146792364 0 + CC CC -/CC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CC, 149.000000,4859.000000, 0.029752,0.970248, 608 chr1 3140463 3140464 rs16823542 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop 608 chr1 3140544 3140545 rs16823545 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 608 chr1 3140811 3140812 rs16823548 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, 608 chr1 3140989 3140990 rs4648458 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3994.000000,1014.000000, 0.797524,0.202476, maf-5-some-pop,maf-5-all-pops 608 chr1 3141030 3141031 rs4648371 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3977.000000,1031.000000, 0.794129,0.205871, maf-5-some-pop,maf-5-all-pops 608 chr1 3141111 3141112 rs11805422 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,TISHKOFF, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 608 chr1 3141166 3141167 rs10909902 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 608 chr1 3141168 3141169 rs75614315 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 608 chr1 3141310 3141311 rs114864264 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 608 chr1 3141370 3141371 rs2817152 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4169.000000,839.000000, 0.832468,0.167532, maf-5-some-pop 608 chr1 3141416 3141417 rs72630997 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB, 2 G,T, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 608 chr1 3141460 3141461 rs10909903 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4607.000000,401.000000, 0.919928,0.080072, maf-5-some-pop 608 chr1 3141494 3141495 rs79117859 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 608 chr1 3141525 3141526 rs116771527 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop,maf-5-all-pops 608 chr1 3141615 3141616 rs16823551 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 356.000000,4652.000000, 0.071086,0.928914, maf-5-some-pop 608 chr1 3141620 3141621 rs146848169 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 608 chr1 3142130 3142131 rs539728555 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 384.000000,4624.000000, 0.076677,0.923323, 608 chr1 3142132 3142133 rs556468558 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 530.000000,4478.000000, 0.105831,0.894169, 608 chr1 3142136 3142137 rs7520225 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,GMI,HGSV,PJP,WI_SSAHASNP, 2 C,T, 2489.000000,2519.000000, 0.497005,0.502995, 608 chr1 3142142 3142143 rs555121309 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, 608 chr1 3142160 3142161 rs151238770 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4698.000000,310.000000, 0.938099,0.061901, 608 chr1 3142161 3142162 rs142298658 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 608 chr1 3142212 3142212 rs137909285 0 + - - -/T genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 4407.000000,601.000000, 0.879992,0.120008, 608 chr1 3142353 3142354 rs112885755 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,ILLUMINA, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 608 chr1 3142943 3142944 rs114911428 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop 608 chr1 3143008 3143009 rs1004176 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop 608 chr1 3143014 3143015 rs7552080 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,WI_SSAHASNP, 2 C,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop 608 chr1 3143333 3143334 rs76945649 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop 608 chr1 3143457 3143457 rs150929331 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,GMI,SSMP, 2 -,T, 4697.000000,311.000000, 0.937899,0.062101, 608 chr1 3143770 3143771 rs74378238 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 608 chr1 3143890 3143891 rs58781987 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop,maf-5-all-pops 608 chr1 3144067 3144068 rs10158583 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 954.000000,4054.000000, 0.190495,0.809505, maf-5-some-pop,maf-5-all-pops 608 chr1 3144302 3144330 rs370769386 0 + CTCTTCAAATATCAGAAGAAAGAGGTGG CTCTTCAAATATCAGAAGAAAGAGGTGG -/CTCTTCAAATATCAGAAGAAAGAGGTGG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CTCTTCAAATATCAGAAGAAAGAGGTGG, 54.000000,4954.000000, 0.010783,0.989217, 608 chr1 3144358 3144359 rs112457668 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 608 chr1 3144402 3144403 rs111747436 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 608 chr1 3144473 3144474 rs114820997 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,EVA-GONL,SSMP, 2 A,C, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop,maf-5-all-pops 608 chr1 3144535 3144536 rs116529408 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 608 chr1 3144536 3144537 rs80221991 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 608 chr1 3144825 3144826 rs16823558 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4715.000000,293.000000, 0.941494,0.058506, maf-5-some-pop 608 chr1 3145202 3145203 rs114784476 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 608 chr1 3145323 3145324 rs76543382 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 608 chr1 3145329 3145330 rs113832357 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 608 chr1 3145411 3145412 rs72630999 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 692.000000,4316.000000, 0.138179,0.861821, maf-5-some-pop 608 chr1 3145413 3145414 rs72631000 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 608 chr1 3145638 3145639 rs114731593 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 608 chr1 3145714 3145715 rs72631001 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop 609 chr1 3145761 3145762 rs116220902 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 609 chr1 3145995 3145995 rs58620949 0 + - - -/TAA genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,TAA, 2402.000000,2606.000000, 0.479633,0.520367, 609 chr1 3146154 3146155 rs7516069 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 C,T, 694.000000,4314.000000, 0.138578,0.861422, maf-5-some-pop 609 chr1 3146190 3146191 rs10157102 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 3979.000000,1029.000000, 0.794529,0.205471, maf-5-some-pop,maf-5-all-pops 609 chr1 3146389 3146390 rs7515701 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,C, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 609 chr1 3146411 3146412 rs74420891 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 609 chr1 3146412 3146413 rs116533680 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 609 chr1 3146496 3146497 rs10157420 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,maf-5-all-pops 609 chr1 3146552 3146553 rs74811628 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop,maf-5-all-pops 609 chr1 3146557 3146558 rs2817155 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 2003.000000,3005.000000, 0.399960,0.600040, maf-5-some-pop,maf-5-all-pops 609 chr1 3146598 3146599 rs2651886 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 609 chr1 3146761 3146762 rs7518852 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2005.000000,3003.000000, 0.400359,0.599641, maf-5-some-pop,maf-5-all-pops 609 chr1 3146787 3146788 rs74904988 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 609 chr1 3147029 3147030 rs6424069 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2696.000000,2312.000000, 0.538339,0.461661, maf-5-some-pop 609 chr1 3147171 3147172 rs2817156 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2531.000000,2477.000000, 0.505391,0.494609, maf-5-some-pop,maf-5-all-pops 609 chr1 3147231 3147232 rs7550396 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 609 chr1 3147290 3147291 rs6424071 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SSMP,WI_SSAHASNP, 2 A,G, 2394.000000,2614.000000, 0.478035,0.521965, maf-5-some-pop,maf-5-all-pops 609 chr1 3147330 3147331 rs11806139 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop,maf-5-all-pops 609 chr1 3147362 3147363 rs11806140 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 609 chr1 3147443 3147444 rs75243707 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 609 chr1 3147592 3147593 rs74048388 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK, 2 C,T, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 609 chr1 3147620 3147621 rs72632103 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4487.000000,521.000000, 0.895966,0.104034, maf-5-some-pop 609 chr1 3147741 3147742 rs79038076 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 316.000000,4692.000000, 0.063099,0.936901, 609 chr1 3147810 3147811 rs56069308 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 609 chr1 3147872 3147873 rs75811948 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 609 chr1 3147884 3147885 rs905132 0 - A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 609 chr1 3147898 3147899 rs10909905 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1588.000000,3420.000000, 0.317093,0.682907, maf-5-some-pop 609 chr1 3147983 3147984 rs146176418 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 609 chr1 3147987 3147988 rs74048390 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,SSMP,TISHKOFF, 2 G,T, 4923.000000,85.000000, 0.983027,0.016973, 609 chr1 3148112 3148113 rs7551207 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,TISHKOFF,WI_SSAHASNP, 2 G,T, 4949.000000,59.000000, 0.988219,0.011781, 609 chr1 3148553 3148554 rs77301359 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop,maf-5-all-pops 609 chr1 3148592 3148593 rs74421929 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop,maf-5-all-pops 609 chr1 3148615 3148616 rs72632106 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop 609 chr1 3148654 3148655 rs142356348 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 609 chr1 3148696 3148697 rs16823576 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop 609 chr1 3148731 3148732 rs79118960 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop,maf-5-all-pops 609 chr1 3149407 3149408 rs2817159 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2392.000000,2616.000000, 0.477636,0.522364, maf-5-some-pop 609 chr1 3149453 3149454 rs61240755 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,HGSV, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 609 chr1 3149957 3149958 rs140280149 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 609 chr1 3149974 3149975 rs75322845 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 447.000000,4561.000000, 0.089257,0.910743, maf-5-some-pop,maf-5-all-pops 609 chr1 3150027 3150028 rs72848029 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,C, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop,maf-5-all-pops 609 chr1 3150028 3150029 rs111591467 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 G,T, 69.000000,4939.000000, 0.013778,0.986222, 609 chr1 3150146 3150147 rs76667772 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,MPI_MOLGEN,SSMP, 2 C,T, 4741.000000,267.000000, 0.946685,0.053315, 609 chr1 3150344 3150345 rs12036784 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 773.000000,4235.000000, 0.154353,0.845647, maf-5-some-pop 609 chr1 3150695 3150696 rs4648461 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,GMI,JMKIDD_LAB,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 454.000000,4554.000000, 0.090655,0.909345, maf-5-some-pop,maf-5-all-pops 609 chr1 3150747 3150748 rs2817161 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,BUSHMAN,EVA-GONL,ILLUMINA,SC_JCM,SSMP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop 609 chr1 3151024 3151025 rs57854542 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 534.000000,4474.000000, 0.106629,0.893371, maf-5-some-pop 609 chr1 3151080 3151081 rs11808635 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,ILLUMINA, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 609 chr1 3151094 3151095 rs7515772 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3918.000000,1090.000000, 0.782348,0.217652, maf-5-some-pop,maf-5-all-pops 609 chr1 3151344 3151345 rs16823580 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 471.000000,4537.000000, 0.094049,0.905950, maf-5-some-pop 609 chr1 3151809 3151810 rs115462968 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 609 chr1 3152097 3152098 rs10909906 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4536.000000,472.000000, 0.905751,0.094249, maf-5-some-pop,maf-5-all-pops 609 chr1 3152255 3152256 rs114318063 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 609 chr1 3152276 3152277 rs114771629 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 609 chr1 3152850 3152851 rs75476550 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 609 chr1 3152922 3152923 rs56788035 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 555.000000,4453.000000, 0.110823,0.889177, maf-5-some-pop,maf-5-all-pops 609 chr1 3153186 3153187 rs78983274 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 609 chr1 3153236 3153237 rs11807062 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 2832.000000,2176.000000, 0.565495,0.434505, maf-5-some-pop,maf-5-all-pops 609 chr1 3153293 3153294 rs16823587 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 492.000000,4516.000000, 0.098243,0.901757, maf-5-some-pop,maf-5-all-pops 609 chr1 3153447 3153448 rs60951434 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop,maf-5-all-pops 609 chr1 3153569 3153570 rs115768459 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 609 chr1 3153718 3153719 rs113002511 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4782.000000,226.000000, 0.954872,0.045128, 609 chr1 3154293 3154294 rs4648372 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2821.000000,2187.000000, 0.563299,0.436701, maf-5-some-pop,maf-5-all-pops 609 chr1 3154528 3154529 rs78191041 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4951.000000,57.000000, 0.988618,0.011382, 609 chr1 3154594 3154595 rs76584994 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 609 chr1 3154620 3154621 rs4648373 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3155.000000,1853.000000, 0.629992,0.370008, maf-5-some-pop,maf-5-all-pops 609 chr1 3154675 3154676 rs72848037 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop,maf-5-all-pops 609 chr1 3154861 3154862 rs10909907 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2812.000000,2196.000000, 0.561502,0.438498, maf-5-some-pop,maf-5-all-pops 609 chr1 3155101 3155102 rs2249336 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1832.000000,3176.000000, 0.365815,0.634185, maf-5-some-pop,maf-5-all-pops 609 chr1 3155418 3155419 rs6658664 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop,maf-5-all-pops 609 chr1 3155424 3155425 rs6676225 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop,maf-5-all-pops 609 chr1 3155545 3155546 rs2249319 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4325.000000,683.000000, 0.863618,0.136382, maf-5-some-pop 609 chr1 3155553 3155554 rs2249318 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4324.000000,684.000000, 0.863419,0.136581, maf-5-some-pop 609 chr1 3156122 3156125 rs138965716 0 + AGG AGG -/AGG genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,AGG, 476.000000,4532.000000, 0.095048,0.904952, 609 chr1 3156175 3156176 rs61687392 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,T, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,maf-5-all-pops 609 chr1 3156249 3156250 rs59131834 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop,maf-5-all-pops 609 chr1 3156349 3156349 rs553445641 0 + - - -/A/AA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 3 -,A,AA, 4807.000000,192.000000,9.000000, 0.959864,0.038339,0.001797, 609 chr1 3156465 3156466 rs2455112 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2490.000000,2518.000000, 0.497204,0.502796, maf-5-some-pop 609 chr1 3156601 3156602 rs12755504 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4305.000000,703.000000, 0.859625,0.140375, maf-5-some-pop 609 chr1 3156726 3156727 rs111957623 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4806.000000,202.000000, 0.959665,0.040335, maf-5-some-pop 609 chr1 3157210 3157211 rs4648374 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,T, 4527.000000,481.000000, 0.903954,0.096046, maf-5-some-pop,maf-5-all-pops 609 chr1 3157284 3157285 rs2455113 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 583.000000,4425.000000, 0.116414,0.883586, maf-5-some-pop,maf-5-all-pops 609 chr1 3157424 3157425 rs16823599 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, maf-5-some-pop 609 chr1 3158213 3158214 rs111899767 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 609 chr1 3158950 3158951 rs72632108 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, 609 chr1 3159756 3159757 rs61054290 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4809.000000,199.000000, 0.960264,0.039736, 609 chr1 3160050 3160051 rs74048400 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,C, 569.000000,4439.000000, 0.113618,0.886382, maf-5-some-pop 609 chr1 3161008 3161009 rs80129380 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop,maf-5-all-pops 609 chr1 3161035 3161036 rs115586394 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 609 chr1 3161873 3161874 rs72632109 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4839.000000,169.000000, 0.966254,0.033746, 609 chr1 3162042 3162043 rs74048402 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop,maf-5-all-pops 609 chr1 3162065 3162066 rs72632110 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, 609 chr1 3162299 3162299 rs148865398 0 + - - -/T genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,T, 4025.000000,983.000000, 0.803714,0.196286, 609 chr1 3162807 3162808 rs72632112 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 609 chr1 3163127 3163128 rs74832584 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4624.000000,384.000000, 0.923323,0.076677, maf-5-some-pop 609 chr1 3163361 3163362 rs116370838 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 609 chr1 3163713 3163714 rs117097455 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 609 chr1 3163951 3163952 rs689565 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,OEFNER,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop 609 chr1 3163996 3163997 rs2937390 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 744.000000,4264.000000, 0.148562,0.851438, maf-5-some-pop,maf-5-all-pops 609 chr1 3164015 3164016 rs2937391 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1934.000000,3074.000000, 0.386182,0.613818, maf-5-some-pop,maf-5-all-pops 609 chr1 3164343 3164344 rs4648375 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 463.000000,4545.000000, 0.092452,0.907548, maf-5-some-pop,maf-5-all-pops 609 chr1 3164546 3164547 rs58814261 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 609 chr1 3164980 3164981 rs75571687 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop,maf-5-all-pops 609 chr1 3165475 3165476 rs7529307 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF,WI_SSAHASNP, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, 609 chr1 3165534 3165535 rs28708839 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 G,T, 52.000000,4956.000000, 0.010383,0.989617, 609 chr1 3165627 3165628 rs115939244 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4703.000000,305.000000, 0.939097,0.060903, 609 chr1 3165681 3165682 rs74050805 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop,maf-5-all-pops 609 chr1 3165722 3165723 rs74050806 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4396.000000,612.000000, 0.877796,0.122204, maf-5-some-pop,maf-5-all-pops 609 chr1 3166026 3166026 rs140819995 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,T, 4905.000000,103.000000, 0.979433,0.020567, 609 chr1 3166105 3166106 rs1105111 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,C, 880.000000,4128.000000, 0.175719,0.824281, maf-5-some-pop,maf-5-all-pops 609 chr1 3166567 3166568 rs117691288 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4725.000000,283.000000, 0.943490,0.056510, maf-5-some-pop,maf-5-all-pops 609 chr1 3166628 3166629 rs138308227 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 609 chr1 3166641 3166642 rs142814337 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 609 chr1 3167030 3167031 rs76321541 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4724.000000,284.000000, 0.943291,0.056709, maf-5-some-pop,maf-5-all-pops 609 chr1 3167202 3167203 rs60443258 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,G, 4679.000000,329.000000, 0.934305,0.065695, maf-5-some-pop 609 chr1 3167744 3167745 rs35272378 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4534.000000,474.000000, 0.905351,0.094649, maf-5-some-pop,maf-5-all-pops 609 chr1 3167869 3167869 rs112643558 0 + - - -/GGGGTGAGGT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,GGGGTGAGGT, 2844.000000,2164.000000, 0.567891,0.432109, 609 chr1 3168173 3168174 rs11589327 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,SSMP, 2 C,T, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,maf-5-all-pops 609 chr1 3168202 3168203 rs61759183 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1925.000000,3083.000000, 0.384385,0.615615, maf-5-some-pop,maf-5-all-pops 609 chr1 3168246 3168247 rs55987640 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 2035.000000,2973.000000, 0.406350,0.593650, maf-5-some-pop,maf-5-all-pops 609 chr1 3168249 3168250 rs10909910 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4141.000000,867.000000, 0.826877,0.173123, maf-5-some-pop,maf-5-all-pops 609 chr1 3168268 3168269 rs116461301 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, 609 chr1 3168279 3168280 rs10797386 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 867.000000,4141.000000, 0.173123,0.826877, maf-5-some-pop 609 chr1 3168305 3168306 rs371154989 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 609 chr1 3168461 3168462 rs12143201 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2981.000000,2027.000000, 0.595248,0.404752, maf-5-some-pop,maf-5-all-pops 609 chr1 3168608 3168609 rs12409278 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 822.000000,4186.000000, 0.164137,0.835863, maf-5-some-pop 609 chr1 3168730 3168731 rs59630628 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 609 chr1 3168750 3168751 rs78718076 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop,maf-5-all-pops 609 chr1 3168947 3168948 rs78912540 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BL,EVA-GONL,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 2381.000000,2627.000000, 0.475439,0.524561, 609 chr1 3169025 3169027 rs145842974 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,PJP,SSMP,TISHKOFF, 2 -,AT, 504.000000,4504.000000, 0.100639,0.899361, 609 chr1 3169043 3169044 rs145061142 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 609 chr1 3169087 3169088 rs7539489 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2039.000000,2969.000000, 0.407149,0.592851, maf-5-some-pop,maf-5-all-pops 609 chr1 3169162 3169163 rs147552685 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 609 chr1 3169416 3169417 rs72848048 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF, 2 A,G, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop,maf-5-all-pops 609 chr1 3169565 3169566 rs12409637 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,maf-5-all-pops 609 chr1 3169572 3169573 rs12410677 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4536.000000,472.000000, 0.905751,0.094249, maf-5-some-pop,maf-5-all-pops 609 chr1 3169589 3169590 rs7513217 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 1173.000000,3835.000000, 0.234225,0.765775, maf-5-some-pop,maf-5-all-pops 609 chr1 3169754 3169755 rs114899186 0 + T T A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 56.000000,4952.000000, 0.011182,0.988818, 609 chr1 3169790 3169791 rs7513410 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 G,T, 903.000000,4105.000000, 0.180312,0.819688, 609 chr1 3169915 3169916 rs35867328 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,HUMANGENOME_JCVI,SSMP, 2 -,C, 597.000000,4411.000000, 0.119209,0.880791, 609 chr1 3170143 3170144 rs7513768 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,T, 694.000000,4314.000000, 0.138578,0.861422, 609 chr1 3170567 3170568 rs56015432 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,HGSV,SSMP, 2 C,G, 4678.000000,330.000000, 0.934105,0.065895, 609 chr1 3171108 3171109 rs61691507 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP, 2 C,T, 1928.000000,3080.000000, 0.384984,0.615016, 609 chr1 3171142 3171143 rs148271114 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 609 chr1 3171356 3171357 rs531391030 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 176.000000,4832.000000, 0.035144,0.964856, 609 chr1 3171383 3171384 rs28883366 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,T, 4119.000000,889.000000, 0.822484,0.177516, 609 chr1 3171808 3171809 rs4325088 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,SC_JCM,SSMP,WI_SSAHASNP, 2 C,G, 595.000000,4413.000000, 0.118810,0.881190, 609 chr1 3171928 3171929 rs4648464 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1926.000000,3082.000000, 0.384585,0.615415, maf-5-some-pop 609 chr1 3171929 3171930 rs4308919 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop,maf-5-all-pops 609 chr1 3172272 3172273 rs2455100 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop 609 chr1 3172542 3172543 rs75004064 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 535.000000,4473.000000, 0.106829,0.893171, maf-5-some-pop 609 chr1 3172762 3172763 rs59227786 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 694.000000,4314.000000, 0.138578,0.861422, maf-5-some-pop,maf-5-all-pops 609 chr1 3172965 3172966 rs78242873 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 609 chr1 3173050 3173051 rs6699624 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 1930.000000,3078.000000, 0.385383,0.614617, 609 chr1 3173227 3173228 rs1971330 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3110.000000,1898.000000, 0.621006,0.378994, 609 chr1 3173281 3173282 rs1971331 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 820.000000,4188.000000, 0.163738,0.836262, 609 chr1 3173380 3173381 rs74757721 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4689.000000,319.000000, 0.936302,0.063698, 609 chr1 3173420 3173425 rs142527363 0 + AAAAT AAAAT -/AAAAT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,SSMP, 2 -,AAAAT, 770.000000,4238.000000, 0.153754,0.846246, 609 chr1 3173722 3173723 rs10909911 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SC_SNP, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, 609 chr1 3173981 3173982 rs79709748 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop,maf-5-all-pops 609 chr1 3174106 3174107 rs12049005 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 300.000000,4708.000000, 0.059904,0.940096, maf-5-some-pop,maf-5-all-pops 609 chr1 3174857 3174858 rs114686766 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 609 chr1 3175370 3175371 rs10909912 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1867.000000,3141.000000, 0.372804,0.627196, maf-5-some-pop,maf-5-all-pops 609 chr1 3175637 3175638 rs12045829 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop 609 chr1 3175689 3175690 rs117242822 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 609 chr1 3175727 3175728 rs2455101 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2896.000000,2112.000000, 0.578275,0.421725, maf-5-some-pop,maf-5-all-pops 609 chr1 3176112 3176113 rs116698658 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop,maf-5-all-pops 609 chr1 3176369 3176370 rs72632123 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4883.000000,125.000000, 0.975040,0.024960, 609 chr1 3176782 3176783 rs76460933 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 609 chr1 3176816 3176817 rs12023701 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 G,T, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop,maf-5-all-pops 609 chr1 3177240 3177244 rs535627497 0 + TTGA TTGA -/TTGA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TTGA, 74.000000,4934.000000, 0.014776,0.985224, 609 chr1 3177311 3177312 rs199989850 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,G, 2556.000000,2452.000000, 0.510383,0.489617, 609 chr1 3177312 3177313 rs562512338 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 2556.000000,2452.000000, 0.510383,0.489617, 609 chr1 3177315 3177316 rs576158442 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 2556.000000,2452.000000, 0.510383,0.489617, 609 chr1 3177319 3177320 rs57179041 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,HGSV, 2 A,G, 2452.000000,2556.000000, 0.489617,0.510383, 609 chr1 3177387 3177388 rs61151413 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 609 chr1 3177590 3177591 rs76907525 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4730.000000,278.000000, 0.944489,0.055511, maf-5-some-pop,maf-5-all-pops 609 chr1 3178110 3178111 rs3002686 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1272.000000,3736.000000, 0.253994,0.746006, maf-5-some-pop,maf-5-all-pops 609 chr1 3178157 3178158 rs114299726 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 65.000000,4943.000000, 0.012979,0.987021, 609 chr1 3178415 3178416 rs2455103 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3678.000000,1330.000000, 0.734425,0.265575, maf-5-some-pop,maf-5-all-pops 609 chr1 3178486 3178487 rs76544063 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 242.000000,4766.000000, 0.048323,0.951677, maf-5-some-pop,maf-5-all-pops 609 chr1 3178581 3178582 rs34474195 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4547.000000,461.000000, 0.907947,0.092053, maf-5-some-pop 609 chr1 3178628 3178629 rs78217156 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 609 chr1 3178704 3178705 rs116571588 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 609 chr1 3178715 3178716 rs72632125 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,maf-5-all-pops 609 chr1 3178824 3178825 rs74050814 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 500.000000,4508.000000, 0.099840,0.900160, maf-5-some-pop 609 chr1 3178849 3178850 rs2455104 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4014.000000,994.000000, 0.801518,0.198482, maf-5-some-pop,maf-5-all-pops 609 chr1 3179122 3179123 rs115571770 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 609 chr1 3179220 3179221 rs72632126 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop,maf-5-all-pops 609 chr1 3179459 3179460 rs7528108 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1332.000000,3676.000000, 0.265974,0.734026, maf-5-some-pop,maf-5-all-pops 609 chr1 3179667 3179668 rs115011682 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 609 chr1 3179702 3179703 rs6656462 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 1722.000000,3286.000000, 0.343850,0.656150, maf-5-some-pop,maf-5-all-pops 609 chr1 3179846 3179847 rs2455105 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3734.000000,1274.000000, 0.745607,0.254393, maf-5-some-pop,maf-5-all-pops 609 chr1 3179885 3179886 rs2455106 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1474.000000,3534.000000, 0.294329,0.705671, maf-5-some-pop,maf-5-all-pops 609 chr1 3180157 3180158 rs2455107 0 + T T G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 1613.000000,3395.000000, 0.322085,0.677915, maf-5-some-pop,maf-5-all-pops 609 chr1 3180370 3180371 rs2455108 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3732.000000,1276.000000, 0.745208,0.254792, maf-5-some-pop,maf-5-all-pops 609 chr1 3180928 3180929 rs148390799 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF,WARNICH_LAB, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 609 chr1 3181893 3181894 rs74050815 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 609 chr1 3181921 3181922 rs10909913 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2899.000000,2109.000000, 0.578874,0.421126, maf-5-some-pop,maf-5-all-pops 609 chr1 3182254 3182255 rs2455097 0 - T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 609 chr1 3182287 3182288 rs114888452 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop,maf-5-all-pops 609 chr1 3182406 3182407 rs2500247 0 - G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 609 chr1 3182568 3182569 rs56042628 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,maf-5-all-pops 609 chr1 3183178 3183179 rs116643425 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4922.000000,86.000000, 0.982827,0.017173, 609 chr1 3183345 3183346 rs2244876 0 - T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 609 chr1 3183420 3183421 rs61445780 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 202.000000,4806.000000, 0.040335,0.959665, 609 chr1 3183463 3183464 rs142258994 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, 609 chr1 3183606 3183607 rs78982773 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4666.000000,342.000000, 0.931709,0.068291, maf-5-some-pop,maf-5-all-pops 609 chr1 3183695 3183696 rs74638769 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4610.000000,398.000000, 0.920527,0.079473, maf-5-some-pop,maf-5-all-pops 609 chr1 3183825 3183826 rs7524427 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,TISHKOFF,WI_SSAHASNP, 2 G,T, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 609 chr1 3183943 3183944 rs78400069 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop,maf-5-all-pops 609 chr1 3184270 3184271 rs113134282 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 609 chr1 3184854 3184855 rs2455119 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 G,T, 3042.000000,1966.000000, 0.607428,0.392572, maf-5-some-pop,maf-5-all-pops 609 chr1 3184971 3184972 rs78982119 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop,maf-5-all-pops 609 chr1 3185070 3185071 rs2455120 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4014.000000,994.000000, 0.801518,0.198482, maf-5-some-pop 609 chr1 3185429 3185430 rs1472598 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3710.000000,1298.000000, 0.740815,0.259185, maf-5-some-pop,maf-5-all-pops 609 chr1 3185593 3185594 rs2455121 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1314.000000,3694.000000, 0.262380,0.737620, maf-5-some-pop,maf-5-all-pops 609 chr1 3185631 3185649 rs139241632 0 + CAGGTGGGGAACAGAAGA CAGGTGGGGAACAGAAGA -/CAGGTGGGGAACAGAAGA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CAGGTGGGGAACAGAAGA, 146.000000,4862.000000, 0.029153,0.970847, 609 chr1 3185669 3185670 rs116497195 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop,maf-5-all-pops 609 chr1 3186140 3186141 rs140793355 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 609 chr1 3186154 3186155 rs113327556 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4676.000000,332.000000, 0.933706,0.066294, 609 chr1 3186204 3186205 rs114834322 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop 609 chr1 3186207 3186208 rs115726292 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 609 chr1 3186292 3186293 rs115705443 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 609 chr1 3186319 3186320 rs36020806 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 1335.000000,3673.000000, 0.266573,0.733427, maf-5-some-pop,maf-5-all-pops 609 chr1 3186406 3186407 rs79443419 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,SSMP,TISHKOFF, 2 G,T, 2114.000000,2894.000000, 0.422125,0.577875, maf-5-some-pop,maf-5-all-pops 609 chr1 3186519 3186523 rs149224241 0 + CAGT CAGT -/CAGT genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,CAGT, 296.000000,4712.000000, 0.059105,0.940895, 609 chr1 3186601 3186602 rs116830896 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, 609 chr1 3186608 3186609 rs35838176 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 1462.000000,3546.000000, 0.291933,0.708067, maf-5-some-pop,maf-5-all-pops 609 chr1 3186616 3186617 rs114090119 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 609 chr1 3186896 3186900 rs140692495 0 + CAGT CAGT -/CAGT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CAGT, 128.000000,4880.000000, 0.025559,0.974441, 609 chr1 3186916 3186917 rs551545291 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,C, 200.000000,4808.000000, 0.039936,0.960064, 609 chr1 3186918 3186919 rs531636466 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 200.000000,4808.000000, 0.039936,0.960064, 609 chr1 3186931 3186932 rs143550347 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 174.000000,4834.000000, 0.034744,0.965256, 609 chr1 3186937 3186938 rs114203802 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 609 chr1 3187025 3187026 rs116428193 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop,maf-5-all-pops 609 chr1 3187184 3187185 rs3002687 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 G,T, 2117.000000,2891.000000, 0.422724,0.577276, maf-5-some-pop,maf-5-all-pops 609 chr1 3187188 3187189 rs75007320 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 4807.000000,201.000000, 0.959864,0.040136, maf-5-some-pop,maf-5-all-pops 609 chr1 3187315 3187316 rs72848069 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 4794.000000,214.000000, 0.957268,0.042732, maf-5-some-pop,maf-5-all-pops 609 chr1 3187607 3187608 rs114966554 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 609 chr1 3187788 3187789 rs16823654 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 609 chr1 3187815 3187816 rs76507850 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 609 chr1 3188142 3188143 rs2455122 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3546.000000,1462.000000, 0.708067,0.291933, maf-5-some-pop 609 chr1 3188155 3188156 rs74994195 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop,maf-5-all-pops 609 chr1 3188296 3188297 rs7523639 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 G,T, 4665.000000,343.000000, 0.931510,0.068490, maf-5-some-pop 609 chr1 3188308 3188309 rs2455123 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3546.000000,1462.000000, 0.708067,0.291933, maf-5-some-pop,maf-5-all-pops 609 chr1 3188504 3188505 rs2455124 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4016.000000,992.000000, 0.801917,0.198083, maf-5-some-pop 609 chr1 3188725 3188726 rs80149583 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, 609 chr1 3188800 3188801 rs72632136 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 609 chr1 3189005 3189006 rs2455125 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1463.000000,3545.000000, 0.292133,0.707867, maf-5-some-pop 609 chr1 3189015 3189016 rs2455126 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3545.000000,1463.000000, 0.707867,0.292133, maf-5-some-pop,maf-5-all-pops 609 chr1 3189048 3189049 rs77207656 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 609 chr1 3189075 3189076 rs11801125 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,CSHL-HAPMAP,EVA-GONL,TISHKOFF, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 609 chr1 3189137 3189138 rs2455127 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2893.000000,2115.000000, 0.577676,0.422324, maf-5-some-pop,maf-5-all-pops 609 chr1 3189518 3189519 rs144329458 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 4912.000000,96.000000, 0.980831,0.019169, 609 chr1 3189610 3189611 rs11802755 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, maf-5-some-pop 609 chr1 3189713 3189714 rs2455128 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2894.000000,2114.000000, 0.577875,0.422125, maf-5-some-pop,maf-5-all-pops 609 chr1 3189731 3189732 rs2500307 0 - T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 609 chr1 3189934 3189935 rs2455129 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4501.000000,507.000000, 0.898762,0.101238, maf-5-some-pop,maf-5-all-pops 609 chr1 3190382 3190383 rs71503056 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,BUSHMAN,ENSEMBL,HUMANGENOME_JCVI,PJP, 2 A,T, 468.000000,4540.000000, 0.093451,0.906550, 609 chr1 3191047 3191048 rs75615905 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 609 chr1 3191208 3191209 rs75352835 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 609 chr1 3191737 3191738 rs2455130 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4016.000000,992.000000, 0.801917,0.198083, maf-5-some-pop 609 chr1 3191882 3191883 rs75423402 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 609 chr1 3191908 3191909 rs12760258 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1341.000000,3667.000000, 0.267772,0.732228, maf-5-some-pop 609 chr1 3192951 3192951 rs148157348 0 + - - -/G genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,G, 4880.000000,128.000000, 0.974441,0.025559, 609 chr1 3192958 3192959 rs2455131 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 2889.000000,2119.000000, 0.576877,0.423123, maf-5-some-pop 609 chr1 3193083 3193084 rs139196257 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 609 chr1 3193102 3193103 rs12742717 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3675.000000,1333.000000, 0.733826,0.266174, maf-5-some-pop,maf-5-all-pops 609 chr1 3193297 3193298 rs35617169 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,TISHKOFF, 2 C,T, 1465.000000,3543.000000, 0.292532,0.707468, maf-5-some-pop,maf-5-all-pops 609 chr1 3193306 3193307 rs35451643 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BL,EVA-GONL,HUMANGENOME_JCVI,LUNTER,SSMP,TISHKOFF, 2 -,C, 1466.000000,3542.000000, 0.292732,0.707268, 609 chr1 3193411 3193412 rs78695193 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4878.000000,130.000000, 0.974042,0.025959, maf-5-some-pop,maf-5-all-pops 609 chr1 3193988 3193989 rs1553285 0 - A A A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 609 chr1 3194243 3194244 rs115921237 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 609 chr1 3194281 3194283 rs139643837 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,CA, 356.000000,4652.000000, 0.071086,0.928914, 609 chr1 3194297 3194299 rs544533237 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CA, 127.000000,4881.000000, 0.025359,0.974641, 609 chr1 3194319 3194320 rs145849315 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BL, 2 C,T, 253.000000,4755.000000, 0.050519,0.949481, 609 chr1 3194651 3194652 rs75054167 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 609 chr1 3194907 3194908 rs56099368 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,G, 4840.000000,168.000000, 0.966454,0.033546, 609 chr1 3194915 3194916 rs16823763 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4505.000000,503.000000, 0.899561,0.100439, maf-5-some-pop 609 chr1 3195068 3195069 rs113983558 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 609 chr1 3195465 3195466 rs115621652 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 609 chr1 3195532 3195533 rs114132224 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,maf-5-all-pops 609 chr1 3195539 3195540 rs6657917 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 974.000000,4034.000000, 0.194489,0.805511, maf-5-some-pop,maf-5-all-pops 609 chr1 3195540 3195541 rs72632145 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4918.000000,90.000000, 0.982029,0.017971, 609 chr1 3195549 3195550 rs79447820 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 G,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 609 chr1 3196052 3196053 rs1574225 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,GMI,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop,maf-5-all-pops 609 chr1 3196356 3196357 rs142222648 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,LUNTER, 2 -,G, 83.000000,4925.000000, 0.016573,0.983427, 609 chr1 3196469 3196470 rs74050824 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop,maf-5-all-pops 609 chr1 3196956 3196957 rs72848098 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 G,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 609 chr1 3197079 3197080 rs79534072 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop,maf-5-all-pops 609 chr1 3197154 3197155 rs114177119 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 609 chr1 3197311 3197312 rs79749883 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 609 chr1 3197530 3197531 rs75596275 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 609 chr1 3197612 3197613 rs76794425 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 609 chr1 3198328 3198329 rs114553524 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,C, 82.000000,4926.000000, 0.016374,0.983626, 609 chr1 3198393 3198394 rs79942329 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 609 chr1 3198827 3198828 rs60436355 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 609 chr1 3199022 3199023 rs115964961 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop,maf-5-all-pops 609 chr1 3199120 3199121 rs61759190 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 609 chr1 3199216 3199217 rs16823802 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4536.000000,472.000000, 0.905751,0.094249, maf-5-some-pop,microattr-tpa 609 chr1 3199633 3199634 rs12562988 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 438.000000,4570.000000, 0.087460,0.912540, maf-5-some-pop 609 chr1 3199726 3199727 rs12563770 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4570.000000,438.000000, 0.912540,0.087460, maf-5-some-pop,maf-5-all-pops 609 chr1 3200282 3200283 rs56004439 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB, 2 A,G, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop 609 chr1 3200336 3200337 rs13374875 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 609 chr1 3200375 3200376 rs13374621 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop 609 chr1 3200560 3200561 rs115426402 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,maf-5-all-pops 609 chr1 3200636 3200637 rs147964860 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 609 chr1 3200666 3200667 rs368484250 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 96.000000,4912.000000, 0.019169,0.980831, 609 chr1 3200757 3200758 rs10909915 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 609 chr1 3200893 3200894 rs72632152 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 609 chr1 3200934 3200935 rs74050828 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 G,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 609 chr1 3201069 3201070 rs6685398 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 1432.000000,3576.000000, 0.285942,0.714058, maf-5-some-pop 609 chr1 3201126 3201127 rs116194159 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 609 chr1 3201132 3201133 rs6690217 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,TISHKOFF, 2 A,C, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop 609 chr1 3201538 3201539 rs115433762 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 609 chr1 3202050 3202051 rs115351230 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 609 chr1 3202136 3202137 rs114915590 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 609 chr1 3202190 3202191 rs72632154 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, 609 chr1 3202234 3202235 rs77346708 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 609 chr1 3202926 3202927 rs59469915 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 609 chr1 3203009 3203010 rs10797387 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3524.000000,1484.000000, 0.703674,0.296326, maf-5-some-pop 609 chr1 3203120 3203121 rs12068687 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 G,T, 4540.000000,468.000000, 0.906550,0.093451, maf-5-some-pop 609 chr1 3203136 3203137 rs12565013 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,C, 4528.000000,480.000000, 0.904153,0.095847, maf-5-some-pop,microattr-tpa 609 chr1 3203227 3203228 rs192988152 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, 609 chr1 3203274 3203275 rs111756326 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 609 chr1 3203401 3203402 rs67328886 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3548.000000,1460.000000, 0.708466,0.291534, maf-5-some-pop 609 chr1 3203617 3203618 rs72849011 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop,maf-5-all-pops 609 chr1 3203672 3203673 rs78341376 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,MPI_MOLGEN,SSMP, 2 A,G, 473.000000,4535.000000, 0.094449,0.905551, maf-5-some-pop,maf-5-all-pops 609 chr1 3203765 3203766 rs77685639 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4527.000000,481.000000, 0.903954,0.096046, maf-5-some-pop,maf-5-all-pops 609 chr1 3203831 3203832 rs61759191 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP, 2 C,T, 3431.000000,1577.000000, 0.685104,0.314896, maf-5-some-pop,maf-5-all-pops 609 chr1 3203955 3203956 rs566014477 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 343.000000,4665.000000, 0.068490,0.931510, 609 chr1 3203971 3203972 rs6677452 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,EVA-GONL, 2 C,G, 4853.000000,155.000000, 0.969050,0.030950, 609 chr1 3204019 3204020 rs113428453 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 C,T, 4463.000000,545.000000, 0.891174,0.108826, 609 chr1 3204046 3204047 rs12030043 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SC_SNP,SSMP, 2 C,T, 391.000000,4617.000000, 0.078075,0.921925, 609 chr1 3204067 3204068 rs12027776 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SC_SNP,SSMP, 2 C,T, 4625.000000,383.000000, 0.923522,0.076478, 609 chr1 3204142 3204143 rs12030066 0 + T T C/T genomic single by-cluster,by-frequency,by-hapmap,by-1000genomes 0.079229 0.182585 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,SC_SNP,SSMP, 2 C,T, 18.000000,248.000000, 0.067669,0.932331, maf-5-some-pop 609 chr1 3204225 3204226 rs6687930 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,SSAHASNP, 2 C,T, 3774.000000,1234.000000, 0.753594,0.246406, 609 chr1 3204318 3204319 rs113294017 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 454.000000,4554.000000, 0.090655,0.909345, 609 chr1 3204344 3204345 rs11801237 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, 609 chr1 3204355 3204356 rs75758397 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4475.000000,533.000000, 0.893570,0.106430, 609 chr1 3204369 3204370 rs535938191 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, 609 chr1 3204494 3204495 rs2134119 0 - C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 609 chr1 3204533 3204534 rs2455117 0 - T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 609 chr1 3204828 3204829 rs74050833 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 609 chr1 3204843 3204844 rs76738833 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 429.000000,4579.000000, 0.085663,0.914337, maf-5-some-pop,maf-5-all-pops 609 chr1 3205089 3205090 rs117369939 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 609 chr1 3205955 3205956 rs61759192 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 609 chr1 3206586 3206587 rs146915024 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,G, 430.000000,4578.000000, 0.085863,0.914137, 609 chr1 3206646 3206647 rs56195320 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop,maf-5-all-pops 609 chr1 3207165 3207166 rs74050835 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 609 chr1 3207779 3207780 rs55866132 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 284.000000,4724.000000, 0.056709,0.943291, maf-5-some-pop 609 chr1 3208322 3208323 rs12404208 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop 609 chr1 3208554 3208555 rs12405692 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4582.000000,426.000000, 0.914936,0.085064, maf-5-some-pop,maf-5-all-pops 609 chr1 3208605 3208606 rs72632161 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 609 chr1 3208795 3208796 rs114652920 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 58.000000,4950.000000, 0.011582,0.988419, 609 chr1 3208961 3208962 rs74830207 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop,maf-5-all-pops 609 chr1 3209225 3209226 rs12405511 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4605.000000,403.000000, 0.919529,0.080471, maf-5-some-pop,maf-5-all-pops 609 chr1 3209282 3209283 rs78986054 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 609 chr1 3209503 3209504 rs12030781 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 434.000000,4574.000000, 0.086661,0.913339, maf-5-some-pop,maf-5-all-pops 609 chr1 3209630 3209631 rs4648376 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2192.000000,2816.000000, 0.437700,0.562300, maf-5-some-pop,maf-5-all-pops 609 chr1 3210304 3210305 rs12565882 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop,maf-5-all-pops 609 chr1 3210326 3210327 rs72632166 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 609 chr1 3210364 3210365 rs56009721 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1034.000000,3974.000000, 0.206470,0.793530, maf-5-some-pop,maf-5-all-pops 609 chr1 3210457 3210458 rs114129573 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 609 chr1 3210599 3210600 rs10909921 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 4579.000000,429.000000, 0.914337,0.085663, maf-5-some-pop,maf-5-all-pops 609 chr1 3210949 3210950 rs4648468 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 595.000000,4413.000000, 0.118810,0.881190, maf-5-some-pop 609 chr1 3211168 3211169 rs79530166 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 609 chr1 3211244 3211245 rs10047257 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop 609 chr1 3211457 3211458 rs4648377 0 + A A A/C genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1468.000000,3540.000000, 0.293131,0.706869, maf-5-some-pop 609 chr1 3211514 3211515 rs11805677 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4164.000000,844.000000, 0.831470,0.168530, maf-5-some-pop,maf-5-all-pops 609 chr1 3211549 3211550 rs4648469 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 614.000000,4394.000000, 0.122604,0.877396, maf-5-some-pop 609 chr1 3211950 3211951 rs149206835 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB, 2 -,G, 213.000000,4795.000000, 0.042532,0.957468, 609 chr1 3211979 3211980 rs12035729 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4562.000000,446.000000, 0.910942,0.089057, maf-5-some-pop,maf-5-all-pops 609 chr1 3212144 3212145 rs56250186 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop,maf-5-all-pops 609 chr1 3212374 3212375 rs115611297 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 609 chr1 3212427 3212428 rs12037974 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop,maf-5-all-pops 609 chr1 3212511 3212512 rs59486466 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 609 chr1 3212590 3212591 rs2500290 0 - G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 609 chr1 3212921 3212922 rs1875452 0 - C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 609 chr1 3212930 3212931 rs60005551 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 978.000000,4030.000000, 0.195288,0.804712, maf-5-some-pop,maf-5-all-pops 609 chr1 3213467 3213468 rs58996169 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop,maf-5-all-pops 609 chr1 3213662 3213663 rs56990256 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop,maf-5-all-pops 609 chr1 3213696 3213697 rs61237638 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop,maf-5-all-pops 609 chr1 3213801 3213802 rs114017815 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 609 chr1 3213904 3213905 rs59719068 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 433.000000,4575.000000, 0.086462,0.913538, 609 chr1 3214142 3214143 rs79903137 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 609 chr1 3214169 3214170 rs7553849 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4374.000000,634.000000, 0.873403,0.126597, maf-5-some-pop 609 chr1 3214302 3214303 rs76866543 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4575.000000,433.000000, 0.913538,0.086462, maf-5-some-pop,maf-5-all-pops 609 chr1 3214486 3214487 rs181911813 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, 609 chr1 3214519 3214520 rs10442593 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2399.000000,2609.000000, 0.479034,0.520966, maf-5-some-pop,maf-5-all-pops 609 chr1 3214557 3214558 rs34287891 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP, 2 G,T, 4570.000000,438.000000, 0.912540,0.087460, maf-5-some-pop,maf-5-all-pops 609 chr1 3214903 3214904 rs117629568 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4564.000000,444.000000, 0.911342,0.088658, maf-5-some-pop,maf-5-all-pops 609 chr1 3214931 3214932 rs74050843 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4725.000000,283.000000, 0.943490,0.056510, maf-5-some-pop,maf-5-all-pops 609 chr1 3214974 3214975 rs114780419 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 609 chr1 3215319 3215320 rs2455143 0 - A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 609 chr1 3215334 3215335 rs79146074 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 609 chr1 3215345 3215346 rs12031520 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop,maf-5-all-pops 609 chr1 3215430 3215431 rs114009370 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 609 chr1 3215944 3215945 rs12728296 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,HGSV,SSAHASNP,SSMP, 2 C,T, 1918.000000,3090.000000, 0.382987,0.617013, 609 chr1 3216035 3216036 rs12723823 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSAHASNP,SSMP, 2 A,G, 4646.000000,362.000000, 0.927716,0.072284, 609 chr1 3216107 3216108 rs59508799 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV, 2 C,G, 424.000000,4584.000000, 0.084665,0.915335, 609 chr1 3216144 3216145 rs79013759 0 + G G G/T genomic single by-cluster,by-frequency 0.48 0.09798 intron exact 1 2 COMPLETE_GENOMICS,ENSEMBL, 2 G,T, 4.000000,6.000000, 0.400000,0.600000, 609 chr1 3216644 3216645 rs557742387 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 129.000000,4879.000000, 0.025759,0.974241, 609 chr1 3216645 3216646 rs577977180 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4878.000000,130.000000, 0.974042,0.025959, 609 chr1 3216705 3216706 rs562831947 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 178.000000,4830.000000, 0.035543,0.964457, 609 chr1 3216706 3216707 rs576510009 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4830.000000,178.000000, 0.964457,0.035543, 609 chr1 3216732 3216733 rs58289593 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,C, 206.000000,4802.000000, 0.041134,0.958866, 609 chr1 3216766 3216767 rs56028514 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,HGSV, 2 C,T, 131.000000,4877.000000, 0.026158,0.973842, 609 chr1 3216767 3216768 rs56222154 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 4877.000000,131.000000, 0.973842,0.026158, 609 chr1 3216849 3216850 rs374258502 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4647.000000,361.000000, 0.927915,0.072085, 609 chr1 3217039 3217040 rs140785716 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4953.000000,55.000000, 0.989018,0.010982, 609 chr1 3217065 3217066 rs61759194 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SSMP,TISHKOFF, 2 A,G, 3018.000000,1990.000000, 0.602636,0.397364, maf-5-some-pop,maf-5-all-pops 609 chr1 3217317 3217318 rs7513462 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 446.000000,4562.000000, 0.089057,0.910942, maf-5-some-pop,maf-5-all-pops 609 chr1 3217391 3217392 rs114106965 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 609 chr1 3218328 3218329 rs2455136 0 - A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 609 chr1 3218654 3218655 rs77990751 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,A, 924.000000,4084.000000, 0.184505,0.815495, 609 chr1 3218877 3218878 rs74050845 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop,maf-5-all-pops 609 chr1 3218900 3218901 rs74050846 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 667.000000,4341.000000, 0.133187,0.866813, maf-5-some-pop,maf-5-all-pops 609 chr1 3218922 3218923 rs2500283 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 609 chr1 3219072 3219072 rs35595493 0 + - - -/A/AA/AAA genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,LUNTER, 4 -,A,AA,AAA, 158.000000,1287.000000,1399.000000,2164.000000, 0.031549,0.256989,0.279353,0.432109, rs-cluster-nonoverlapping-alleles 609 chr1 3219362 3219363 rs34966839 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop,maf-5-all-pops 609 chr1 3219434 3219435 rs11806922 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop,maf-5-all-pops 609 chr1 3219949 3219950 rs6670328 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 3368.000000,1640.000000, 0.672524,0.327476, maf-5-some-pop,maf-5-all-pops 609 chr1 3219996 3219997 rs12566936 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop,maf-5-all-pops 609 chr1 3220022 3220023 rs76611986 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4278.000000,730.000000, 0.854233,0.145767, maf-5-some-pop 609 chr1 3220100 3220101 rs6673393 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 696.000000,4312.000000, 0.138978,0.861022, maf-5-some-pop 609 chr1 3220159 3220160 rs6670518 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop 609 chr1 3220208 3220209 rs60211537 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop,maf-5-all-pops 609 chr1 3220212 3220213 rs75623240 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 609 chr1 3220275 3220276 rs79804418 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 943.000000,4065.000000, 0.188299,0.811701, maf-5-some-pop,maf-5-all-pops 609 chr1 3220296 3220297 rs58607429 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,G, 4311.000000,697.000000, 0.860823,0.139177, maf-5-some-pop,maf-5-all-pops 609 chr1 3220371 3220372 rs60484261 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,SSMP, 2 A,G, 697.000000,4311.000000, 0.139177,0.860823, 609 chr1 3220492 3220493 rs2455133 0 - C C C/G genomic single by-cluster,by-frequency,by-2hit-2allele,by-1000genomes 0.493517 0.056563 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 7.000000,3.000000, 0.700000,0.300000, 609 chr1 3220543 3220544 rs113647040 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,G, 500.000000,4508.000000, 0.099840,0.900160, 609 chr1 3221083 3221084 rs7514868 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 A,G, 958.000000,4050.000000, 0.191294,0.808706, maf-5-some-pop,maf-5-all-pops 609 chr1 3221202 3221203 rs58038343 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,ILLUMINA, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 609 chr1 3221293 3221294 rs10909922 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, 609 chr1 3221316 3221316 rs569040442 0 + - - -/GGGGT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GGGGT, 3368.000000,1640.000000, 0.672524,0.327476, 609 chr1 3221370 3221371 rs7517281 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 928.000000,4080.000000, 0.185304,0.814696, maf-5-some-pop,maf-5-all-pops 609 chr1 3221437 3221438 rs56357655 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 G,T, 4911.000000,97.000000, 0.980631,0.019369, 609 chr1 3221528 3221529 rs12407909 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4290.000000,718.000000, 0.856629,0.143371, maf-5-some-pop,maf-5-all-pops 609 chr1 3221620 3221621 rs4648378 0 + A A A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2880.000000,2128.000000, 0.575080,0.424920, maf-5-some-pop,maf-5-all-pops 609 chr1 3221836 3221837 rs10909923 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop,maf-5-all-pops 609 chr1 3221926 3221927 rs7517815 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 707.000000,4301.000000, 0.141174,0.858826, maf-5-some-pop,maf-5-all-pops 609 chr1 3221940 3221941 rs7517817 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,G, 697.000000,4311.000000, 0.139177,0.860823, maf-5-some-pop,maf-5-all-pops 609 chr1 3222112 3222113 rs7534363 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 696.000000,4312.000000, 0.138978,0.861022, maf-5-some-pop 609 chr1 3222333 3222334 rs7534029 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop 609 chr1 3222469 3222470 rs11808276 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4755.000000,253.000000, 0.949481,0.050519, maf-5-some-pop,maf-5-all-pops 609 chr1 3222626 3222627 rs10909924 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop,maf-5-all-pops 609 chr1 3222638 3222639 rs61759195 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 3938.000000,1070.000000, 0.786342,0.213658, maf-5-some-pop,maf-5-all-pops 609 chr1 3222692 3222693 rs11807038 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 689.000000,4319.000000, 0.137580,0.862420, maf-5-some-pop,maf-5-all-pops 609 chr1 3222705 3222706 rs3923081 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2845.000000,2163.000000, 0.568091,0.431909, maf-5-some-pop,maf-5-all-pops 609 chr1 3222800 3222801 rs74048207 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, 609 chr1 3223229 3223230 rs4648471 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3071.000000,1937.000000, 0.613219,0.386781, maf-5-some-pop,maf-5-all-pops 609 chr1 3223279 3223280 rs4233025 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1402.000000,3606.000000, 0.279952,0.720048, maf-5-some-pop 609 chr1 3223390 3223391 rs114911090 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 609 chr1 3223532 3223533 rs4648472 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2163.000000,2845.000000, 0.431909,0.568091, maf-5-some-pop,maf-5-all-pops 609 chr1 3223763 3223764 rs4648473 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 683.000000,4325.000000, 0.136382,0.863618, maf-5-some-pop 609 chr1 3223898 3223899 rs10909925 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 609 chr1 3223954 3223955 rs4145901 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 681.000000,4327.000000, 0.135982,0.864018, maf-5-some-pop 609 chr1 3224194 3224195 rs16824031 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 4574.000000,434.000000, 0.913339,0.086661, maf-5-some-pop,maf-5-all-pops 609 chr1 3224209 3224210 rs4145900 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2882.000000,2126.000000, 0.575479,0.424521, maf-5-some-pop,maf-5-all-pops 609 chr1 3224486 3224487 rs75988676 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop,maf-5-all-pops 609 chr1 3224487 3224488 rs145309832 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 609 chr1 3224508 3224509 rs57100114 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop,maf-5-all-pops 609 chr1 3224779 3224780 rs112585546 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 C,G, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 609 chr1 3224802 3224803 rs2483258 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop 609 chr1 3225031 3225032 rs77133829 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 609 chr1 3225052 3225053 rs59646965 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 302.000000,4706.000000, 0.060304,0.939696, maf-5-some-pop,maf-5-all-pops 609 chr1 3225334 3225335 rs7526595 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop 609 chr1 3225367 3225368 rs77348459 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4816.000000,192.000000, 0.961661,0.038339, maf-5-some-pop,maf-5-all-pops 609 chr1 3225478 3225479 rs59353950 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop,maf-5-all-pops 609 chr1 3225632 3225633 rs74048210 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 609 chr1 3225650 3225651 rs59525574 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 609 chr1 3225711 3225712 rs74048211 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop,maf-5-all-pops 609 chr1 3225756 3225757 rs12086132 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 918.000000,4090.000000, 0.183307,0.816693, maf-5-some-pop,maf-5-all-pops 609 chr1 3225932 3225933 rs74048213 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, maf-5-some-pop,maf-5-all-pops 609 chr1 3226136 3226137 rs60030849 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop,maf-5-all-pops 609 chr1 3226194 3226195 rs61153586 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop,maf-5-all-pops 609 chr1 3226296 3226297 rs60867953 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4800.000000,208.000000, 0.958466,0.041533, maf-5-some-pop,maf-5-all-pops 609 chr1 3226375 3226376 rs111663651 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4495.000000,513.000000, 0.897564,0.102436, maf-5-some-pop,maf-5-all-pops 609 chr1 3226527 3226528 rs10909926 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop,maf-5-all-pops 609 chr1 3226538 3226539 rs59127130 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 341.000000,4667.000000, 0.068091,0.931909, maf-5-some-pop 609 chr1 3226832 3226833 rs12567158 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4302.000000,706.000000, 0.859026,0.140974, maf-5-some-pop,maf-5-all-pops 609 chr1 3226853 3226854 rs74048217 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 438.000000,4570.000000, 0.087460,0.912540, maf-5-some-pop,maf-5-all-pops 609 chr1 3226862 3226863 rs78855622 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 524.000000,4484.000000, 0.104633,0.895367, maf-5-some-pop,maf-5-all-pops 609 chr1 3226928 3226929 rs12566775 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop,maf-5-all-pops 609 chr1 3226948 3226949 rs12567387 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 699.000000,4309.000000, 0.139577,0.860423, maf-5-some-pop,maf-5-all-pops 609 chr1 3227076 3227077 rs78927923 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop 609 chr1 3227116 3227117 rs77034722 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 609 chr1 3227121 3227122 rs146467289 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 609 chr1 3227169 3227170 rs74048219 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 4593.000000,415.000000, 0.917133,0.082867, maf-5-some-pop,maf-5-all-pops 609 chr1 3227174 3227175 rs2483259 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4282.000000,726.000000, 0.855032,0.144968, maf-5-some-pop 609 chr1 3227187 3227188 rs2483260 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2169.000000,2839.000000, 0.433107,0.566893, maf-5-some-pop,maf-5-all-pops 609 chr1 3227358 3227362 rs537424717 0 + TGTG TGTG -/TGTG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TGTG, 55.000000,4953.000000, 0.010982,0.989018, 609 chr1 3227415 3227416 rs2483261 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4279.000000,729.000000, 0.854433,0.145567, maf-5-some-pop 609 chr1 3227485 3227486 rs55776902 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4594.000000,414.000000, 0.917332,0.082668, maf-5-some-pop,maf-5-all-pops 609 chr1 3227500 3227501 rs57342206 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4368.000000,640.000000, 0.872204,0.127796, maf-5-some-pop,maf-5-all-pops 609 chr1 3227537 3227538 rs113166499 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 522.000000,4486.000000, 0.104233,0.895767, maf-5-some-pop,maf-5-all-pops 609 chr1 3227546 3227547 rs55869144 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 416.000000,4592.000000, 0.083067,0.916933, maf-5-some-pop,maf-5-all-pops 609 chr1 3227788 3227789 rs112547636 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4476.000000,532.000000, 0.893770,0.106230, maf-5-some-pop,maf-5-all-pops 609 chr1 3227974 3227975 rs114496206 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop 609 chr1 3228151 3228152 rs74048222 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 413.000000,4595.000000, 0.082468,0.917532, maf-5-some-pop,maf-5-all-pops 609 chr1 3228160 3228161 rs74048223 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4595.000000,413.000000, 0.917532,0.082468, maf-5-some-pop,maf-5-all-pops 609 chr1 3228362 3228363 rs74048225 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 4636.000000,372.000000, 0.925719,0.074281, maf-5-some-pop,maf-5-all-pops 609 chr1 3228601 3228602 rs78266782 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 193.000000,4815.000000, 0.038538,0.961462, maf-5-some-pop 609 chr1 3228653 3228654 rs111450087 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop,maf-5-all-pops 609 chr1 3228782 3228783 rs74048226 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 4595.000000,413.000000, 0.917532,0.082468, maf-5-some-pop,maf-5-all-pops 609 chr1 3228797 3228798 rs146748526 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 609 chr1 3228914 3228915 rs12409345 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1096.000000,3912.000000, 0.218850,0.781150, maf-5-some-pop,maf-5-all-pops 609 chr1 3229133 3229134 rs2483262 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4326.000000,682.000000, 0.863818,0.136182, maf-5-some-pop 609 chr1 3229184 3229185 rs12743017 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,TISHKOFF, 2 A,G, 413.000000,4595.000000, 0.082468,0.917532, maf-5-some-pop,maf-5-all-pops 609 chr1 3229257 3229258 rs12409315 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,TISHKOFF, 2 A,G, 4593.000000,415.000000, 0.917133,0.082867, maf-5-some-pop,maf-5-all-pops 609 chr1 3229431 3229432 rs10909928 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4458.000000,550.000000, 0.890176,0.109824, maf-5-some-pop,maf-5-all-pops 609 chr1 3229735 3229736 rs145986026 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 609 chr1 3229968 3229969 rs57323723 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 415.000000,4593.000000, 0.082867,0.917133, maf-5-some-pop,maf-5-all-pops 609 chr1 3230037 3230038 rs143967821 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,LUNTER, 2 -,C, 63.000000,4945.000000, 0.012580,0.987420, 609 chr1 3230266 3230267 rs112301226 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 609 chr1 3230476 3230477 rs12741836 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2066.000000,2942.000000, 0.412540,0.587460, maf-5-some-pop,maf-5-all-pops 609 chr1 3230519 3230520 rs34708358 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 414.000000,4594.000000, 0.082668,0.917332, maf-5-some-pop,maf-5-all-pops 609 chr1 3230533 3230534 rs114064823 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 609 chr1 3230543 3230544 rs16824089 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 684.000000,4324.000000, 0.136581,0.863419, maf-5-some-pop,microattr-tpa 609 chr1 3230914 3230915 rs116409299 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 609 chr1 3231498 3231499 rs80170901 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,MPI_MOLGEN, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop,maf-5-all-pops 609 chr1 3231523 3231524 rs10127738 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 609 chr1 3231589 3231590 rs72849077 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop,maf-5-all-pops 609 chr1 3231708 3231709 rs115207409 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop,maf-5-all-pops 609 chr1 3231748 3231748 rs561344414 0 + - - -/CTCCCT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,CTCCCT, 4486.000000,522.000000, 0.895767,0.104233, 609 chr1 3232199 3232200 rs115326531 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, 609 chr1 3232269 3232269 rs141068503 0 + - - -/AA genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,AA, 4826.000000,182.000000, 0.963658,0.036342, 609 chr1 3232377 3232378 rs2483264 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2196.000000,2812.000000, 0.438498,0.561502, maf-5-some-pop,maf-5-all-pops 609 chr1 3232937 3232938 rs116353006 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, 609 chr1 3233270 3233271 rs116913227 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 445.000000,4563.000000, 0.088858,0.911142, maf-5-some-pop,maf-5-all-pops 609 chr1 3233486 3233487 rs116572061 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,maf-5-all-pops 609 chr1 3233829 3233830 rs28541625 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop 609 chr1 3233937 3233938 rs7531407 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4528.000000,480.000000, 0.904153,0.095847, maf-5-some-pop,maf-5-all-pops 609 chr1 3233963 3233964 rs28650804 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4533.000000,475.000000, 0.905152,0.094848, maf-5-some-pop,maf-5-all-pops 609 chr1 3234087 3234088 rs76106819 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4587.000000,421.000000, 0.915935,0.084065, maf-5-some-pop,maf-5-all-pops 609 chr1 3234102 3234103 rs189709910 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4587.000000,421.000000, 0.915935,0.084065, 609 chr1 3234105 3234105 rs112827077 0 + - - -/A genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSIP,SSMP,TISHKOFF, 2 -,A, 4528.000000,480.000000, 0.904153,0.095847, 609 chr1 3234158 3234159 rs144519667 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 609 chr1 3234366 3234367 rs77828565 0 + A A A/G genomic single by-frequency,by-1000genomes 0.000918 0.0214 intron exact 1 1 1000GENOMES, 2 A,G, 118.000000,2.000000, 0.983333,0.016667, 609 chr1 3234447 3234448 rs79749978 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,MPI_MOLGEN, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 609 chr1 3234699 3234700 rs60221418 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop,maf-5-all-pops 609 chr1 3234709 3234710 rs140970102 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,T, 475.000000,4533.000000, 0.094848,0.905152, 609 chr1 3234866 3234867 rs16824138 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,PERLEGEN, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop 609 chr1 3234965 3234968 rs145467921 0 + TTC TTC -/TTC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,LUNTER, 2 -,TTC, 87.000000,4921.000000, 0.017372,0.982628, 609 chr1 3235081 3235085 rs142663929 0 + TATC TATC -/TATC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,LUNTER, 2 -,TATC, 86.000000,4922.000000, 0.017173,0.982827, 609 chr1 3235285 3235286 rs12044867 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 4587.000000,421.000000, 0.915935,0.084065, maf-5-some-pop,maf-5-all-pops 609 chr1 3236371 3236372 rs7531499 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 466.000000,4542.000000, 0.093051,0.906949, maf-5-some-pop,maf-5-all-pops 609 chr1 3236726 3236727 rs12041848 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop,maf-5-all-pops 609 chr1 3236893 3236894 rs117646771 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 411.000000,4597.000000, 0.082069,0.917931, maf-5-some-pop,maf-5-all-pops 609 chr1 3237173 3237174 rs6687835 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3028.000000,1980.000000, 0.604633,0.395367, maf-5-some-pop,maf-5-all-pops 609 chr1 3237414 3237415 rs2500273 0 - T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 609 chr1 3237687 3237688 rs190098002 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4950.000000,58.000000, 0.988419,0.011582, 609 chr1 3237794 3237796 rs144307164 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,LUNTER,SSMP,WARNICH_LAB, 2 -,CA, 420.000000,4588.000000, 0.083866,0.916134, 609 chr1 3237802 3237803 rs77870106 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4563.000000,445.000000, 0.911142,0.088858, 609 chr1 3237826 3237830 rs112137565 0 + TATT TATT -/TATT genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,TATT, 207.000000,4801.000000, 0.041334,0.958666, 609 chr1 3238013 3238014 rs12042882 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 G,T, 4577.000000,431.000000, 0.913938,0.086062, maf-5-some-pop,maf-5-all-pops 609 chr1 3238098 3238102 rs201182900 0 + TGTA TGTA -/TGTA genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,TGTA, 445.000000,4563.000000, 0.088858,0.911142, 609 chr1 3238107 3238108 rs566190667 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 424.000000,4584.000000, 0.084665,0.915335, 609 chr1 3238138 3238142 rs150064778 0 + TGTT TGTT -/TGTT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TGTT, 433.000000,4575.000000, 0.086462,0.913538, 609 chr1 3238294 3238295 rs11809446 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ABI,CSHL-HAPMAP, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 609 chr1 3238571 3238572 rs12043730 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 412.000000,4596.000000, 0.082268,0.917732, maf-5-some-pop,maf-5-all-pops 609 chr1 3238602 3238606 rs562333506 0 + TGTT TGTT -/TGTT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,TGTT, 439.000000,4569.000000, 0.087660,0.912340, 609 chr1 3238651 3238653 rs111996349 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,AT, 178.000000,4830.000000, 0.035543,0.964457, 609 chr1 3238706 3238710 rs138034018 0 + TGTG TGTG -/TGTG genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 -,TGTG, 930.000000,4078.000000, 0.185703,0.814297, 609 chr1 3238721 3238725 rs566391258 0 + TGTG TGTG -/TGTG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TGTG, 105.000000,4903.000000, 0.020967,0.979034, 609 chr1 3238725 3238725 rs536917782 0 + - - -/TGTG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,TGTG, 4579.000000,429.000000, 0.914337,0.085663, 609 chr1 3238768 3238772 rs554867765 0 + GTGT GTGT -/GTGT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GTGT, 96.000000,4912.000000, 0.019169,0.980831, 609 chr1 3238836 3238837 rs74419001 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop,maf-5-all-pops 609 chr1 3239152 3239153 rs111427764 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 609 chr1 3239397 3239398 rs74344710 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 609 chr1 3239991 3239992 rs12047667 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4610.000000,398.000000, 0.920527,0.079473, maf-5-some-pop,maf-5-all-pops 609 chr1 3240198 3240199 rs870465 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 798.000000,4210.000000, 0.159345,0.840655, maf-5-some-pop 609 chr1 3240245 3240246 rs7552861 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4752.000000,256.000000, 0.948882,0.051118, maf-5-some-pop,maf-5-all-pops 609 chr1 3240344 3240345 rs874244 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4559.000000,449.000000, 0.910344,0.089657, maf-5-some-pop,maf-5-all-pops 609 chr1 3240599 3240600 rs76734579 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 446.000000,4562.000000, 0.089057,0.910942, maf-5-some-pop,maf-5-all-pops 609 chr1 3240622 3240623 rs74048243 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,G, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop,maf-5-all-pops 609 chr1 3240634 3240635 rs59973297 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 609 chr1 3240724 3240725 rs118127661 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop,maf-5-all-pops 609 chr1 3240870 3240871 rs114067149 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 609 chr1 3240972 3240973 rs74048244 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, 609 chr1 3241115 3241116 rs57675406 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 592.000000,4416.000000, 0.118211,0.881789, maf-5-some-pop 609 chr1 3241230 3241231 rs60030257 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 609 chr1 3241253 3241254 rs79548216 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 4556.000000,452.000000, 0.909744,0.090256, maf-5-some-pop,maf-5-all-pops 609 chr1 3241290 3241291 rs57631188 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 499.000000,4509.000000, 0.099641,0.900359, maf-5-some-pop,maf-5-all-pops 609 chr1 3241293 3241294 rs12411233 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 609 chr1 3241424 3241425 rs116702094 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop,maf-5-all-pops 609 chr1 3241568 3241569 rs145074105 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 609 chr1 3241973 3241974 rs61511829 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 210.000000,4798.000000, 0.041933,0.958067, 609 chr1 3242217 3242218 rs61759196 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,ILLUMINA, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 609 chr1 3242276 3242277 rs12047663 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop,maf-5-all-pops 609 chr1 3242277 3242278 rs114515947 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 609 chr1 3242494 3242495 rs572806068 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 609 chr1 3242530 3242531 rs7521865 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 2845.000000,2163.000000, 0.568091,0.431909, maf-5-some-pop,maf-5-all-pops 609 chr1 3242533 3242534 rs578044552 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 609 chr1 3242551 3242552 rs182514555 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4666.000000,342.000000, 0.931709,0.068291, 609 chr1 3242560 3242560 rs576855774 0 + - - -/C genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,C, 4679.000000,329.000000, 0.934305,0.065695, 609 chr1 3242796 3242797 rs57942787 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3760.000000,1248.000000, 0.750799,0.249201, maf-5-some-pop,maf-5-all-pops 609 chr1 3243349 3243350 rs2483268 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3506.000000,1502.000000, 0.700080,0.299920, maf-5-some-pop,maf-5-all-pops 609 chr1 3243350 3243351 rs11809320 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,ILLUMINA, 2 G,T, 4931.000000,77.000000, 0.984625,0.015375, 609 chr1 3243421 3243422 rs2483269 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3577.000000,1431.000000, 0.714257,0.285743, maf-5-some-pop,maf-5-all-pops 609 chr1 3243533 3243534 rs193002272 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 609 chr1 3243921 3243922 rs111593284 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 609 chr1 3244030 3244031 rs116862051 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 331.000000,4677.000000, 0.066094,0.933906, maf-5-some-pop,maf-5-all-pops 609 chr1 3244237 3244240 rs34748455 0 + GAT GAT -/GAT genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,ABI,EVA-GONL,LUNTER,PJP,SSMP, 2 -,GAT, 1842.000000,3166.000000, 0.367812,0.632188, 609 chr1 3244256 3244257 rs2483270 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1845.000000,3163.000000, 0.368411,0.631589, maf-5-some-pop,maf-5-all-pops 609 chr1 3244302 3244303 rs12047172 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop,maf-5-all-pops 609 chr1 3244589 3244590 rs115602064 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 609 chr1 3244655 3244656 rs116154748 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 609 chr1 3244705 3244706 rs75583502 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4957.000000,51.000000, 0.989816,0.010184, 609 chr1 3244794 3244795 rs79823300 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop 609 chr1 3245382 3245383 rs75636324 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 609 chr1 3245520 3245521 rs61451238 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,C, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 609 chr1 3245605 3245605 rs201855056 0 + - - -/CCTTCTCCCTGGGCC genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CCTTCTCCCTGGGCC, 4213.000000,795.000000, 0.841254,0.158746, 609 chr1 3245793 3245794 rs150385126 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 609 chr1 3245798 3245799 rs56368529 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 577.000000,4431.000000, 0.115216,0.884784, maf-5-some-pop,maf-5-all-pops 609 chr1 3245813 3245814 rs78198450 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 609 chr1 3245994 3245995 rs12045637 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP, 2 A,G, 331.000000,4677.000000, 0.066094,0.933906, maf-5-some-pop 609 chr1 3246092 3246093 rs9424311 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1310.000000,3698.000000, 0.261581,0.738419, maf-5-some-pop,maf-5-all-pops 609 chr1 3246112 3246113 rs78389367 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 425.000000,4583.000000, 0.084864,0.915136, maf-5-some-pop,maf-5-all-pops 609 chr1 3246170 3246171 rs55929121 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4242.000000,766.000000, 0.847045,0.152955, maf-5-some-pop,maf-5-all-pops 609 chr1 3246766 3246767 rs76468147 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4583.000000,425.000000, 0.915136,0.084864, maf-5-some-pop 609 chr1 3246838 3246839 rs60965469 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4201.000000,807.000000, 0.838858,0.161142, maf-5-some-pop 609 chr1 3247032 3247033 rs10909931 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, 609 chr1 3247058 3247059 rs115318861 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 609 chr1 3247370 3247371 rs79131369 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 331.000000,4677.000000, 0.066094,0.933906, maf-5-some-pop,maf-5-all-pops 609 chr1 3247388 3247389 rs2483272 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2902.000000,2106.000000, 0.579473,0.420527, maf-5-some-pop,maf-5-all-pops 609 chr1 3247571 3247572 rs76122673 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4582.000000,426.000000, 0.914936,0.085064, maf-5-some-pop,maf-5-all-pops 609 chr1 3247787 3247788 rs77278952 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop,maf-5-all-pops 609 chr1 3247822 3247822 rs60666748 0 + - - -/G genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,G, 4913.000000,95.000000, 0.981030,0.018970, 609 chr1 3247835 3247836 rs11577229 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2157.000000,2851.000000, 0.430711,0.569289, maf-5-some-pop,maf-5-all-pops 609 chr1 3247864 3247865 rs2483273 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 3528.000000,1480.000000, 0.704473,0.295527, maf-5-some-pop,maf-5-all-pops 609 chr1 3247970 3247971 rs12022267 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4196.000000,812.000000, 0.837859,0.162141, maf-5-some-pop 609 chr1 3247973 3247974 rs12047586 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 812.000000,4196.000000, 0.162141,0.837859, maf-5-some-pop 609 chr1 3248014 3248014 rs59248922 0 + - - -/TGAA/TGAATGAA genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER, 3 -,TGAA,TGAATGAA, 3608.000000,1393.000000,7.000000, 0.720447,0.278155,0.001398, 609 chr1 3248195 3248196 rs12047648 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 331.000000,4677.000000, 0.066094,0.933906, maf-5-some-pop,maf-5-all-pops 609 chr1 3248258 3248259 rs114783159 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 609 chr1 3248540 3248541 rs12061652 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,C, 4738.000000,270.000000, 0.946086,0.053914, maf-5-some-pop 609 chr1 3248585 3248586 rs11800023 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,PJP, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop,maf-5-all-pops 609 chr1 3248721 3248722 rs56033677 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1063.000000,3945.000000, 0.212260,0.787740, maf-5-some-pop,maf-5-all-pops 609 chr1 3248917 3248918 rs75524828 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 349.000000,4659.000000, 0.069688,0.930312, maf-5-some-pop,maf-5-all-pops 609 chr1 3249178 3249179 rs75387710 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4659.000000,349.000000, 0.930312,0.069688, maf-5-some-pop,maf-5-all-pops 609 chr1 3249241 3249242 rs2483275 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 C,T, 4206.000000,802.000000, 0.839856,0.160144, maf-5-some-pop 609 chr1 3249297 3249298 rs115692861 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 609 chr1 3249462 3249463 rs72632188 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 601.000000,4407.000000, 0.120008,0.879992, maf-5-some-pop,maf-5-all-pops 609 chr1 3249742 3249743 rs114962676 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop,maf-5-all-pops 609 chr1 3250208 3250211 rs147117219 0 + GTG GTG -/GTG genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,GTG, 1143.000000,3865.000000, 0.228235,0.771765, 609 chr1 3250230 3250231 rs114431672 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop,maf-5-all-pops 609 chr1 3250352 3250353 rs76396820 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,C, 51.000000,4957.000000, 0.010184,0.989816, 609 chr1 3250941 3250942 rs12058584 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 G,T, 4742.000000,266.000000, 0.946885,0.053115, 609 chr1 3251009 3251010 rs78738711 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4957.000000,51.000000, 0.989816,0.010184, 609 chr1 3251158 3251159 rs1110307 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1154.000000,3854.000000, 0.230431,0.769569, maf-5-some-pop 609 chr1 3251292 3251293 rs2483276 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3773.000000,1235.000000, 0.753395,0.246605, maf-5-some-pop,maf-5-all-pops 609 chr1 3251323 3251324 rs2483277 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3735.000000,1273.000000, 0.745807,0.254193, maf-5-some-pop,maf-5-all-pops 609 chr1 3251336 3251337 rs79829486 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4744.000000,264.000000, 0.947284,0.052716, 609 chr1 3251586 3251587 rs115167431 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 609 chr1 3251799 3251800 rs77888709 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 71.000000,4937.000000, 0.014177,0.985823, 609 chr1 3251974 3251975 rs4648477 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1853.000000,3155.000000, 0.370008,0.629992, maf-5-some-pop,maf-5-all-pops 609 chr1 3252006 3252007 rs4648478 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3165.000000,1843.000000, 0.631989,0.368011, maf-5-some-pop,maf-5-all-pops 609 chr1 3252103 3252104 rs2483278 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1164.000000,3844.000000, 0.232428,0.767572, maf-5-some-pop,maf-5-all-pops 609 chr1 3252168 3252169 rs2483279 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 3737.000000,1271.000000, 0.746206,0.253794, maf-5-some-pop,maf-5-all-pops 609 chr1 3252375 3252376 rs112674440 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 609 chr1 3252382 3252383 rs112152434 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 609 chr1 3252780 3252781 rs10797388 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2651.000000,2357.000000, 0.529353,0.470647, maf-5-some-pop,maf-5-all-pops 609 chr1 3252846 3252848 rs201720655 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,TG, 111.000000,4897.000000, 0.022164,0.977835, 609 chr1 3252907 3252909 rs201744188 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,AT, 92.000000,4916.000000, 0.018371,0.981629, 609 chr1 3253003 3253005 rs202228099 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,AT, 51.000000,4957.000000, 0.010184,0.989816, 609 chr1 3253161 3253162 rs4648479 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop,maf-5-all-pops 609 chr1 3253218 3253233 rs552955658 0 + TGTATGTGTGCACAT TGTATGTGTGCACAT -/TGTATGTGTGCACAT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TGTATGTGTGCACAT, 74.000000,4934.000000, 0.014776,0.985224, 609 chr1 3253241 3253243 rs36192537 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,AT, 1867.000000,3141.000000, 0.372804,0.627196, 609 chr1 3253588 3253589 rs114958858 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 155.000000,4853.000000, 0.030950,0.969050, maf-5-some-pop,maf-5-all-pops 609 chr1 3253702 3253703 rs10909933 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3151.000000,1857.000000, 0.629193,0.370807, maf-5-some-pop,maf-5-all-pops 609 chr1 3253721 3253723 rs146587498 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,TG, 348.000000,4660.000000, 0.069489,0.930511, 609 chr1 3253833 3253834 rs114990273 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 609 chr1 3253838 3253839 rs7516137 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3152.000000,1856.000000, 0.629393,0.370607, maf-5-some-pop,maf-5-all-pops 609 chr1 3253888 3253889 rs7516150 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2733.000000,2275.000000, 0.545727,0.454273, maf-5-some-pop,maf-5-all-pops 609 chr1 3253923 3253924 rs79943218 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4661.000000,347.000000, 0.930711,0.069289, maf-5-some-pop,maf-5-all-pops 609 chr1 3253940 3253941 rs7552331 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1856.000000,3152.000000, 0.370607,0.629393, maf-5-some-pop,maf-5-all-pops 609 chr1 3254038 3254039 rs77188861 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 416.000000,4592.000000, 0.083067,0.916933, maf-5-some-pop,maf-5-all-pops 609 chr1 3254099 3254100 rs16824328 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop 609 chr1 3254108 3254109 rs139763490 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 51.000000,4957.000000, 0.010184,0.989816, 609 chr1 3254208 3254209 rs74048267 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 609 chr1 3254320 3254321 rs72849100 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 609 chr1 3254355 3254356 rs4494089 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3524.000000,1484.000000, 0.703674,0.296326, maf-5-some-pop,maf-5-all-pops 609 chr1 3254629 3254630 rs72849603 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 609 chr1 3254645 3254646 rs114254884 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 609 chr1 3254822 3254823 rs72849605 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 G,T, 72.000000,4936.000000, 0.014377,0.985623, 609 chr1 3255081 3255082 rs1110215 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TSC-CSHL, 2 C,T, 4664.000000,344.000000, 0.931310,0.068690, maf-5-some-pop,maf-5-all-pops 609 chr1 3255110 3255111 rs143546390 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 609 chr1 3255336 3255337 rs60466882 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 609 chr1 3255640 3255641 rs16824333 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 344.000000,4664.000000, 0.068690,0.931310, maf-5-some-pop 609 chr1 3255709 3255710 rs78662553 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 609 chr1 3255773 3255774 rs72632195 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 609 chr1 3256201 3256202 rs16824338 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop 609 chr1 3256275 3256276 rs116760833 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 267.000000,4741.000000, 0.053315,0.946685, 609 chr1 3256453 3256454 rs74048271 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 609 chr1 3256824 3256825 rs12023091 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 344.000000,4664.000000, 0.068690,0.931310, maf-5-some-pop,maf-5-all-pops 609 chr1 3257629 3257629 rs35146930 0 + - - -/T genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER, 2 -,T, 3159.000000,1849.000000, 0.630791,0.369209, 609 chr1 3257738 3257739 rs2483281 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2302.000000,2706.000000, 0.459665,0.540335, maf-5-some-pop,maf-5-all-pops 609 chr1 3257744 3257771 rs141989884 0 + AAGCTCCAGAGTGCAAAGCTCTCGAGA AAGCTCCAGAGTGCAAAGCTCTCGAGA -/AAGCTCCAGAGTGCAAAGCTCTCGAGA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,GMI,LUNTER, 2 -,AAGCTCCAGAGTGCAAAGCTCTCGAGA, 520.000000,4488.000000, 0.103834,0.896166, 609 chr1 3257836 3257837 rs79305929 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 609 chr1 3257839 3257840 rs76529959 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,maf-5-all-pops 609 chr1 3258319 3258320 rs2483282 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2437.000000,2571.000000, 0.486621,0.513379, maf-5-some-pop,maf-5-all-pops 609 chr1 3258533 3258534 rs2483283 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1632.000000,3376.000000, 0.325879,0.674121, maf-5-some-pop,maf-5-all-pops 609 chr1 3258541 3258542 rs2483284 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1632.000000,3376.000000, 0.325879,0.674121, maf-5-some-pop,maf-5-all-pops 609 chr1 3258687 3258688 rs2483285 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1634.000000,3374.000000, 0.326278,0.673722, maf-5-some-pop 609 chr1 3258694 3258695 rs12402533 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,maf-5-all-pops 609 chr1 3258991 3258992 rs114480588 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 609 chr1 3259028 3259029 rs6686156 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 354.000000,4654.000000, 0.070687,0.929313, maf-5-some-pop,maf-5-all-pops 609 chr1 3259368 3259369 rs2483286 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2944.000000,2064.000000, 0.587859,0.412141, maf-5-some-pop 609 chr1 3259428 3259429 rs114775231 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 609 chr1 3259499 3259500 rs12025979 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,G, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop 609 chr1 3259826 3259827 rs116762128 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 609 chr1 3259883 3259887 rs34692733 0 + TTGT TTGT -/TTGT genomic deletion unknown 0 0 intron range 1 9 1000GENOMES,ABI,BILGI_BIOE,EVA-GONL,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,TTGT, 1634.000000,3374.000000, 0.326278,0.673722, 609 chr1 3259946 3259947 rs76879698 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, 609 chr1 3259953 3259954 rs2483288 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1634.000000,3374.000000, 0.326278,0.673722, maf-5-some-pop,maf-5-all-pops 609 chr1 3260068 3260068 rs368240584 0 + - - -/T/TTT genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,SSIP,SSMP, 3 -,T,TTT, 3430.000000,1573.000000,5.000000, 0.684905,0.314097,0.000998, 609 chr1 3260215 3260216 rs143371653 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, 609 chr1 3260395 3260396 rs9424291 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3374.000000,1634.000000, 0.673722,0.326278, 609 chr1 3260455 3260456 rs143989512 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 609 chr1 3260469 3260470 rs9424292 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3374.000000,1634.000000, 0.673722,0.326278, 609 chr1 3260763 3260764 rs11803139 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,PJP,TISHKOFF, 2 A,C, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop,maf-5-all-pops 609 chr1 3261515 3261516 rs4648379 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3155.000000,1853.000000, 0.629992,0.370008, maf-5-some-pop,maf-5-all-pops 609 chr1 3261924 3261925 rs4648380 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 609 chr1 3261992 3261993 rs138739968 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4943.000000,65.000000, 0.987021,0.012979, 609 chr1 3262122 3262123 rs144191734 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WARNICH_LAB, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 609 chr1 3262255 3262256 rs148688194 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 58.000000,4950.000000, 0.011582,0.988419, 609 chr1 3262257 3262258 rs7544315 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 C,T, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop,maf-5-all-pops 609 chr1 3262268 3262269 rs12564920 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 A,G, 2978.000000,2030.000000, 0.594649,0.405351, maf-5-some-pop,maf-5-all-pops 609 chr1 3262290 3262291 rs115015911 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 609 chr1 3262367 3262390 rs377373723 0 + GGTTCCTCCTGTGCTGCCCTCTC GGTTCCTCCTGTGCTGCCCTCTC -/GGTTCCTCCTGTGCTGCCCTCTC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GGTTCCTCCTGTGCTGCCCTCTC, 1286.000000,3722.000000, 0.256789,0.743211, 609 chr1 3262389 3262390 rs370873085 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 3899.000000,1109.000000, 0.778554,0.221446, 609 chr1 3262775 3262775 rs58181932 0 + - - -/T genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,TISHKOFF, 2 -,T, 4848.000000,160.000000, 0.968051,0.031949, 609 chr1 3263259 3263260 rs144022593 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,WARNICH_LAB, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, 609 chr1 3263428 3263429 rs56058891 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 C,T, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop,maf-5-all-pops 609 chr1 3263741 3263742 rs12066228 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SC_SNP,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 609 chr1 3264189 3264190 rs2483289 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1068.000000,3940.000000, 0.213259,0.786741, maf-5-some-pop,maf-5-all-pops 609 chr1 3264960 3264961 rs115046943 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 609 chr1 3265011 3265012 rs78858851 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 609 chr1 3265179 3265180 rs141437055 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 609 chr1 3265723 3265724 rs112295117 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,T, 69.000000,4939.000000, 0.013778,0.986222, 609 chr1 3265802 3265803 rs72849616 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 673.000000,4335.000000, 0.134385,0.865615, maf-5-some-pop,maf-5-all-pops 609 chr1 3266415 3266416 rs1316324 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ABI,EVA-GONL,TSC-CSHL, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, 609 chr1 3266592 3266593 rs117737913 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 609 chr1 3266683 3266684 rs111426893 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 609 chr1 3266848 3266849 rs2483290 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 134.000000,4874.000000, 0.026757,0.973243, 609 chr1 3267141 3267142 rs6692460 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3898.000000,1110.000000, 0.778355,0.221645, maf-5-some-pop 609 chr1 3267439 3267440 rs138738185 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,LUNTER, 2 -,C, 51.000000,4957.000000, 0.010184,0.989816, 609 chr1 3267825 3267826 rs77270279 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 1042.000000,3966.000000, 0.208067,0.791933, maf-5-some-pop,maf-5-all-pops 609 chr1 3268526 3268527 rs76822965 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 609 chr1 3268626 3268627 rs75760211 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 4882.000000,126.000000, 0.974840,0.025160, 609 chr1 3269059 3269060 rs72633304 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4637.000000,371.000000, 0.925919,0.074082, maf-5-some-pop,maf-5-all-pops 609 chr1 3269709 3269710 rs12076855 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,C, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop 609 chr1 3269827 3269828 rs2483256 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2602.000000,2406.000000, 0.519569,0.480431, maf-5-some-pop,maf-5-all-pops 609 chr1 3270894 3270895 rs4648484 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 1039.000000,3969.000000, 0.207468,0.792532, 609 chr1 3271153 3271154 rs35864930 0 + G G G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 3661.000000,1347.000000, 0.731030,0.268970, maf-5-some-pop 609 chr1 3271598 3271599 rs74048282 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 4696.000000,312.000000, 0.937700,0.062300, maf-5-some-pop 609 chr1 3271605 3271606 rs74377326 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 261.000000,4747.000000, 0.052117,0.947883, maf-5-some-pop 609 chr1 3271968 3271969 rs7547842 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,G, 998.000000,4010.000000, 0.199281,0.800719, maf-5-some-pop,maf-5-all-pops 609 chr1 3272075 3272076 rs60095027 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 650.000000,4358.000000, 0.129792,0.870208, maf-5-some-pop 609 chr1 3272150 3272151 rs113506146 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4528.000000,480.000000, 0.904153,0.095847, maf-5-some-pop,maf-5-all-pops 609 chr1 3272540 3272541 rs7550526 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 2130.000000,2878.000000, 0.425319,0.574681, maf-5-some-pop,maf-5-all-pops 609 chr1 3272560 3272561 rs77387203 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 609 chr1 3272825 3272826 rs184903484 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 71.000000,4937.000000, 0.014177,0.985823, 609 chr1 3273187 3273188 rs118011975 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 609 chr1 3274113 3274114 rs569077950 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4755.000000,253.000000, 0.949481,0.050519, 609 chr1 3274234 3274235 rs72849621 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 609 chr1 3274244 3274245 rs144404695 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,EVA-GONL, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 609 chr1 3274705 3274706 rs2483265 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4050.000000,958.000000, 0.808706,0.191294, maf-5-some-pop 609 chr1 3274823 3274824 rs57176063 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 4759.000000,249.000000, 0.950280,0.049720, maf-5-some-pop,maf-5-all-pops 609 chr1 3274882 3274883 rs76864961 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 609 chr1 3274954 3274955 rs60848464 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop,maf-5-all-pops 609 chr1 3275076 3275077 rs56215001 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4760.000000,248.000000, 0.950479,0.049521, maf-5-some-pop,maf-5-all-pops 609 chr1 3275148 3275149 rs12748963 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3884.000000,1124.000000, 0.775559,0.224441, maf-5-some-pop 609 chr1 3275445 3275446 rs146972791 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 609 chr1 3275476 3275477 rs76056665 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop,maf-5-all-pops 609 chr1 3275671 3275672 rs114860370 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 609 chr1 3275672 3275673 rs143492984 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 609 chr1 3275803 3275804 rs115640556 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 609 chr1 3275821 3275822 rs9424293 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4194.000000,814.000000, 0.837460,0.162540, maf-5-some-pop 609 chr1 3276001 3276002 rs2483271 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4231.000000,777.000000, 0.844848,0.155152, maf-5-some-pop,maf-5-all-pops 609 chr1 3276438 3276439 rs12073210 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP, 2 G,T, 4951.000000,57.000000, 0.988618,0.011382, 610 chr1 3277049 3277050 rs113308990 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,C, 69.000000,4939.000000, 0.013778,0.986222, 610 chr1 3277090 3277091 rs115303132 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop 610 chr1 3277222 3277223 rs117822291 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 610 chr1 3277600 3277601 rs114797493 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, 610 chr1 3277790 3277791 rs55829707 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, 610 chr1 3278150 3278151 rs17395449 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop 610 chr1 3278401 3278401 rs550954723 0 + - - -/GGAG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GGAG, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3278899 3278899 rs35222628 0 + - - -/C genomic insertion unknown 0 0 intron between 1 10 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 1949.000000,3059.000000, 0.389177,0.610823, 610 chr1 3279097 3279098 rs113360998 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 610 chr1 3279267 3279268 rs11807862 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 741.000000,4267.000000, 0.147963,0.852037, maf-5-some-pop,maf-5-all-pops 610 chr1 3279323 3279324 rs7524171 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2251.000000,2757.000000, 0.449481,0.550519, maf-5-some-pop,maf-5-all-pops 610 chr1 3279422 3279423 rs11807497 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop,maf-5-all-pops 610 chr1 3279442 3279443 rs79958519 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4931.000000,77.000000, 0.984625,0.015375, 610 chr1 3279515 3279516 rs77566928 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,GMI,SSMP, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 610 chr1 3280252 3280253 rs6658356 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 598.000000,4410.000000, 0.119409,0.880591, maf-5-some-pop,maf-5-all-pops,microattr-tpa 610 chr1 3280594 3280595 rs114140517 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop 610 chr1 3281180 3281181 rs79552416 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop,maf-5-all-pops 610 chr1 3281417 3281418 rs72849634 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 255.000000,4753.000000, 0.050919,0.949081, maf-5-some-pop,maf-5-all-pops 610 chr1 3281436 3281437 rs145167434 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 610 chr1 3281512 3281513 rs76860630 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 610 chr1 3281798 3281799 rs79833039 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, 610 chr1 3281945 3281946 rs61759199 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 610 chr1 3282020 3282021 rs114519134 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop 610 chr1 3282197 3282198 rs74050351 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop,maf-5-all-pops 610 chr1 3282208 3282209 rs115817617 0 + T T A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 52.000000,4956.000000, 0.010383,0.989617, 610 chr1 3282666 3282667 rs55798279 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 225.000000,4783.000000, 0.044928,0.955072, maf-5-some-pop 610 chr1 3282752 3282753 rs117628234 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 610 chr1 3282876 3282877 rs78812251 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 610 chr1 3283428 3283429 rs78880955 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 610 chr1 3283527 3283528 rs4648485 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2516.000000,2492.000000, 0.502396,0.497604, maf-5-some-pop,maf-5-all-pops 610 chr1 3283599 3283600 rs137947147 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, 610 chr1 3283657 3283658 rs58140344 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop,maf-5-all-pops 610 chr1 3283903 3283904 rs76015181 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 610 chr1 3283969 3283970 rs115177861 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 610 chr1 3284145 3284146 rs75241354 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 610 chr1 3284221 3284222 rs76586769 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 610 chr1 3284426 3284429 rs140361845 0 + AAG AAG -/AAG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,AAG, 52.000000,4956.000000, 0.010383,0.989617, 610 chr1 3284836 3284837 rs76378670 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop,maf-5-all-pops 610 chr1 3285303 3285304 rs4648487 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2429.000000,2579.000000, 0.485024,0.514976, maf-5-some-pop,maf-5-all-pops 610 chr1 3285618 3285619 rs80262389 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 610 chr1 3285627 3285628 rs6424073 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2465.000000,2543.000000, 0.492212,0.507788, maf-5-some-pop,maf-5-all-pops 610 chr1 3285749 3285750 rs72849637 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4377.000000,631.000000, 0.874002,0.125998, maf-5-some-pop,maf-5-all-pops 610 chr1 3286077 3286077 rs58880425 0 + - - -/TGA genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,HGSV,LUNTER,TISHKOFF, 2 -,TGA, 4748.000000,260.000000, 0.948083,0.051917, 610 chr1 3286252 3286253 rs16823663 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 264.000000,4744.000000, 0.052716,0.947284, maf-5-some-pop 610 chr1 3286351 3286352 rs61653552 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 610 chr1 3286550 3286551 rs76103107 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop 610 chr1 3286643 3286644 rs74610699 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 4917.000000,91.000000, 0.981829,0.018171, 610 chr1 3286647 3286648 rs55934415 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 610 chr1 3286723 3286724 rs74050362 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop,maf-5-all-pops 610 chr1 3287524 3287525 rs114852617 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop,maf-5-all-pops 610 chr1 3287550 3287551 rs12138292 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2485.000000,2523.000000, 0.496206,0.503794, 610 chr1 3287768 3287772 rs138516806 0 + CCAC CCAC -/CCAC genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,GMI,LUNTER,PJP,SSMP, 2 -,CCAC, 1998.000000,3010.000000, 0.398962,0.601038, 610 chr1 3288350 3288351 rs55818771 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 C,T, 4696.000000,312.000000, 0.937700,0.062300, maf-5-some-pop 610 chr1 3288487 3288488 rs77041408 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, maf-5-some-pop,maf-5-all-pops 610 chr1 3288536 3288537 rs16823665 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,G, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 610 chr1 3288682 3288683 rs80169542 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop,maf-5-all-pops 610 chr1 3288902 3288903 rs74050364 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop,maf-5-all-pops 610 chr1 3289494 3289495 rs116189435 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop,maf-5-all-pops 610 chr1 3289523 3289524 rs12135987 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2130.000000,2878.000000, 0.425319,0.574681, maf-5-some-pop,maf-5-all-pops 610 chr1 3289606 3289607 rs6688949 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2493.000000,2515.000000, 0.497804,0.502196, maf-5-some-pop,maf-5-all-pops 610 chr1 3290090 3290091 rs77352686 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 610 chr1 3290693 3290694 rs72849642 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4744.000000,264.000000, 0.947284,0.052716, maf-5-some-pop,maf-5-all-pops 610 chr1 3291304 3291305 rs77823539 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 610 chr1 3291387 3291388 rs116271360 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop 610 chr1 3292089 3292090 rs72633311 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 610 chr1 3292875 3292876 rs4648488 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2691.000000,2317.000000, 0.537340,0.462660, maf-5-some-pop,maf-5-all-pops 610 chr1 3292909 3292910 rs114716028 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4852.000000,156.000000, 0.968850,0.031150, maf-5-some-pop,maf-5-all-pops 610 chr1 3293279 3293280 rs117187253 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 610 chr1 3293382 3293383 rs115193217 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop 610 chr1 3293664 3293665 rs4648489 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1609.000000,3399.000000, 0.321286,0.678714, maf-5-some-pop,maf-5-all-pops 610 chr1 3293827 3293828 rs116452823 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 610 chr1 3293858 3293859 rs116040130 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 92.000000,4916.000000, 0.018371,0.981629, 610 chr1 3294998 3294999 rs117210351 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 610 chr1 3295011 3295012 rs114773823 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop,maf-5-all-pops 610 chr1 3295029 3295030 rs61759201 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 610 chr1 3295743 3295744 rs116514884 0 + C C A/C genomic single by-frequency,by-1000genomes 0.100026 0.20002 intron exact 1 1 1000GENOMES, 2 A,C, 18.000000,100.000000, 0.152542,0.847458, maf-5-some-pop,maf-5-all-pops 610 chr1 3296037 3296038 rs560664058 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 236.000000,4772.000000, 0.047125,0.952875, 610 chr1 3296171 3296172 rs560028107 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 284.000000,4724.000000, 0.056709,0.943291, 610 chr1 3296303 3296304 rs561179623 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, 610 chr1 3296697 3296698 rs61043152 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 A,G, 1987.000000,3021.000000, 0.396765,0.603235, maf-5-some-pop,maf-5-all-pops 610 chr1 3296738 3296739 rs112875497 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 399.000000,4609.000000, 0.079673,0.920327, maf-5-some-pop,maf-5-all-pops 610 chr1 3296771 3296772 rs79358574 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop,maf-5-all-pops 610 chr1 3296974 3296975 rs79009011 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop,maf-5-all-pops 610 chr1 3297048 3297049 rs76419782 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB, 2 C,G, 52.000000,4956.000000, 0.010383,0.989617, 610 chr1 3297149 3297150 rs61759202 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 398.000000,4610.000000, 0.079473,0.920527, maf-5-some-pop,maf-5-all-pops 610 chr1 3297280 3297281 rs11584942 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, 610 chr1 3297385 3297386 rs11584967 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop 610 chr1 3297459 3297459 rs201839757 0 + - - -/G genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,G, 4928.000000,80.000000, 0.984026,0.015974, 610 chr1 3297637 3297638 rs12085231 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 A,C, 400.000000,4608.000000, 0.079872,0.920128, maf-5-some-pop,maf-5-all-pops 610 chr1 3297798 3297799 rs4648490 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2340.000000,2668.000000, 0.467252,0.532748, maf-5-some-pop,maf-5-all-pops 610 chr1 3297909 3297911 rs145739022 0 + GA GA -/GA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GA, 149.000000,4859.000000, 0.029752,0.970248, 610 chr1 3297965 3297966 rs186007008 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, 610 chr1 3298867 3298868 rs12086816 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 610 chr1 3299034 3299035 rs79216523 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 610 chr1 3299422 3299423 rs116177133 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 610 chr1 3299486 3299487 rs59822811 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 610 chr1 3299535 3299536 rs80134843 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop,maf-5-all-pops 610 chr1 3299825 3299826 rs144955066 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 610 chr1 3300085 3300086 rs2493307 0 - A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_JCM,SC_SNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 610 chr1 3300168 3300169 rs12723712 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop,maf-5-all-pops 610 chr1 3300206 3300207 rs143244801 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 57.000000,4951.000000, 0.011382,0.988618, 610 chr1 3300278 3300279 rs55693725 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP, 2 A,C, 378.000000,4630.000000, 0.075479,0.924521, maf-5-some-pop,maf-5-all-pops 610 chr1 3300401 3300405 rs146607114 0 + CCTG CCTG -/CCTG genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CCTG, 1750.000000,3258.000000, 0.349441,0.650559, 610 chr1 3300447 3300448 rs113469962 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4762.000000,246.000000, 0.950879,0.049121, 610 chr1 3300497 3300498 rs10909935 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 C,T, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop,maf-5-all-pops 610 chr1 3300791 3300792 rs114310369 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 G,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop,maf-5-all-pops 610 chr1 3300806 3300807 rs868688 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2094.000000,2914.000000, 0.418131,0.581869, maf-5-some-pop,maf-5-all-pops 610 chr1 3300952 3300953 rs113092878 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop 610 chr1 3300983 3300984 rs77152904 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,maf-5-all-pops 610 chr1 3301033 3301034 rs13375777 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 285.000000,4723.000000, 0.056909,0.943091, maf-5-some-pop,maf-5-all-pops 610 chr1 3301202 3301203 rs6684411 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4841.000000,167.000000, 0.966653,0.033347, maf-5-some-pop,maf-5-all-pops 610 chr1 3301575 3301576 rs113915415 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 4945.000000,63.000000, 0.987420,0.012580, 610 chr1 3301585 3301586 rs117381898 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 610 chr1 3301720 3301721 rs2282198 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 23 1000GENOMES,ABI,APPLERA_GI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSMP,TSC-CSHL,YUSUKE, 2 C,T, 3303.000000,1705.000000, 0.659545,0.340455, maf-5-some-pop,maf-5-all-pops 610 chr1 3302676 3302677 rs11810256 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 610 chr1 3302744 3302745 rs74372288 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 3311.000000,1697.000000, 0.661142,0.338858, maf-5-some-pop,maf-5-all-pops 610 chr1 3302809 3302811 rs112667507 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AG, 1693.000000,3315.000000, 0.338059,0.661941, 610 chr1 3302887 3302888 rs13376540 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 275.000000,4733.000000, 0.054912,0.945088, maf-5-some-pop 610 chr1 3302967 3302968 rs113174929 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 610 chr1 3303445 3303446 rs2245703 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 1861.000000,3147.000000, 0.371605,0.628395, maf-5-some-pop 610 chr1 3303489 3303490 rs7521103 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,WI_SSAHASNP, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 610 chr1 3303544 3303545 rs75603027 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 4544.000000,464.000000, 0.907348,0.092652, maf-5-some-pop,maf-5-all-pops 610 chr1 3303562 3303562 rs3215937 0 + - - -/A genomic insertion unknown 0 0 intron between 1 11 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 3336.000000,1672.000000, 0.666134,0.333866, 610 chr1 3303632 3303633 rs6666433 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,BL,EVA-GONL,ILLUMINA,PERLEGEN, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop 610 chr1 3303649 3303650 rs111717109 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,EVA-GONL, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 610 chr1 3303730 3303731 rs2065524 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop,maf-5-all-pops 610 chr1 3303766 3303767 rs6676024 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, 610 chr1 3303937 3303938 rs2065525 0 + C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 3378.000000,1630.000000, 0.674521,0.325479, maf-5-some-pop 610 chr1 3304021 3304022 rs6676261 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,ILLUMINA,JMKIDD_LAB, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 610 chr1 3304127 3304128 rs4648491 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3911.000000,1097.000000, 0.780950,0.219050, maf-5-some-pop,maf-5-all-pops 610 chr1 3304254 3304255 rs145617099 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 610 chr1 3305015 3305016 rs17399998 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 610 chr1 3305095 3305096 rs55792473 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP, 2 C,G, 338.000000,4670.000000, 0.067492,0.932508, maf-5-some-pop,maf-5-all-pops 610 chr1 3305111 3305112 rs116166023 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 610 chr1 3305312 3305313 rs12043148 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2017.000000,2991.000000, 0.402756,0.597244, maf-5-some-pop,maf-5-all-pops 610 chr1 3305451 3305452 rs6687463 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1765.000000,3243.000000, 0.352436,0.647564, maf-5-some-pop,maf-5-all-pops 610 chr1 3305465 3305466 rs114071111 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop,maf-5-all-pops 610 chr1 3305518 3305519 rs114922556 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 610 chr1 3305737 3305738 rs79456011 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 2207.000000,2801.000000, 0.440695,0.559305, maf-5-some-pop,maf-5-all-pops 610 chr1 3305959 3305960 rs72633315 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 610 chr1 3306520 3306521 rs535049586 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4948.000000,60.000000, 0.988019,0.011981, 610 chr1 3306719 3306720 rs2483216 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF, 2 G,T, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop,maf-5-all-pops 610 chr1 3308031 3308032 rs117509657 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, 610 chr1 3308174 3308175 rs115642107 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 610 chr1 3308460 3308461 rs2483217 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 610 chr1 3308599 3308600 rs117802017 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 610 chr1 3308705 3308706 rs115622686 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, 610 chr1 3308956 3308957 rs12139767 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 476.000000,4532.000000, 0.095048,0.904952, maf-5-some-pop 610 chr1 3309390 3309391 rs76549526 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop,maf-5-all-pops 610 chr1 3309465 3309466 rs35864014 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 474.000000,4534.000000, 0.094649,0.905351, maf-5-some-pop,maf-5-all-pops 610 chr1 3309750 3309751 rs75481520 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 610 chr1 3310347 3310348 rs142734201 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 610 chr1 3310967 3310968 rs143413629 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4778.000000,230.000000, 0.954073,0.045927, 610 chr1 3311100 3311101 rs10909936 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,HGSV,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4536.000000,472.000000, 0.905751,0.094249, maf-5-some-pop,maf-5-all-pops 610 chr1 3311211 3311212 rs2493253 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 610 chr1 3311260 3311261 rs6702992 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 1940.000000,3068.000000, 0.387380,0.612620, maf-5-some-pop,maf-5-all-pops 610 chr1 3311321 3311322 rs80057889 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 610 chr1 3311362 3311363 rs7355115 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,PJP,SC_SNP,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop 610 chr1 3311412 3311413 rs75887679 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,PJP, 2 -,T, 4319.000000,689.000000, 0.862420,0.137580, 610 chr1 3311544 3311545 rs6703344 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 610 chr1 3311683 3311684 rs7355116 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,HGSV,ILLUMINA,PJP,SC_SNP,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop 610 chr1 3312030 3312031 rs883678 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4534.000000,474.000000, 0.905351,0.094649, maf-5-some-pop 610 chr1 3312123 3312124 rs72633316 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1904.000000,3104.000000, 0.380192,0.619808, maf-5-some-pop,maf-5-all-pops 610 chr1 3312144 3312145 rs149825734 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4929.000000,79.000000, 0.984225,0.015775, 610 chr1 3312255 3312256 rs17822575 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 457.000000,4551.000000, 0.091254,0.908746, maf-5-some-pop 610 chr1 3312325 3312326 rs883679 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL, 2 G,T, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop 610 chr1 3312401 3312402 rs78758558 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop,maf-5-all-pops 610 chr1 3312435 3312436 rs10909937 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2448.000000,2560.000000, 0.488818,0.511182, maf-5-some-pop,maf-5-all-pops 610 chr1 3312492 3312493 rs139632123 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 610 chr1 3312663 3312664 rs56378103 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 C,T, 3865.000000,1143.000000, 0.771765,0.228235, maf-5-some-pop,maf-5-all-pops 610 chr1 3312666 3312667 rs76885046 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 610 chr1 3312962 3312963 rs12726710 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4540.000000,468.000000, 0.906550,0.093451, maf-5-some-pop,maf-5-all-pops 610 chr1 3313107 3313108 rs12058363 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,APPLERA_GI,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SEATTLESEQ,TISHKOFF, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop 610 chr1 3314030 3314031 rs76683330 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 610 chr1 3314103 3314104 rs114304601 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 610 chr1 3314345 3314346 rs2483218 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 610 chr1 3314671 3314672 rs116850814 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, 610 chr1 3315061 3315062 rs57432749 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3206.000000,1802.000000, 0.640176,0.359824, maf-5-some-pop,maf-5-all-pops 610 chr1 3315185 3315186 rs76821606 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,EVA-GONL,ILLUMINA, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 610 chr1 3315358 3315359 rs12144338 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4024.000000,984.000000, 0.803514,0.196486, maf-5-some-pop,maf-5-all-pops 610 chr1 3315532 3315533 rs78739434 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 326.000000,4682.000000, 0.065096,0.934904, maf-5-some-pop,maf-5-all-pops 610 chr1 3315638 3315639 rs74048427 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 610 chr1 3315817 3315818 rs7542793 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1798.000000,3210.000000, 0.359026,0.640974, maf-5-some-pop 610 chr1 3315830 3315831 rs115282426 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 610 chr1 3315831 3315832 rs12737284 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1013.000000,3995.000000, 0.202276,0.797724, maf-5-some-pop,maf-5-all-pops 610 chr1 3315835 3315836 rs76029539 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 610 chr1 3315984 3315985 rs12117228 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1016.000000,3992.000000, 0.202875,0.797125, maf-5-some-pop,maf-5-all-pops 610 chr1 3316012 3316013 rs7551733 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3206.000000,1802.000000, 0.640176,0.359824, maf-5-some-pop,maf-5-all-pops 610 chr1 3316538 3316539 rs56042259 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 224.000000,4784.000000, 0.044728,0.955272, maf-5-some-pop,maf-5-all-pops 610 chr1 3316674 3316675 rs10909939 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop 610 chr1 3316901 3316902 rs111626042 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 268.000000,4740.000000, 0.053514,0.946486, maf-5-some-pop,maf-5-all-pops 610 chr1 3317129 3317130 rs75102834 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 610 chr1 3317134 3317135 rs12743248 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop,maf-5-all-pops 610 chr1 3317151 3317152 rs74048429 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 610 chr1 3317232 3317233 rs12747145 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop,maf-5-all-pops 610 chr1 3317409 3317410 rs56155111 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop,maf-5-all-pops 610 chr1 3317538 3317539 rs74420686 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 4951.000000,57.000000, 0.988618,0.011382, 610 chr1 3317779 3317780 rs6424074 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4046.000000,962.000000, 0.807907,0.192093, maf-5-some-pop 610 chr1 3317886 3317887 rs6424075 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3997.000000,1011.000000, 0.798123,0.201877, maf-5-some-pop 610 chr1 3318021 3318022 rs78425796 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4739.000000,269.000000, 0.946286,0.053714, maf-5-some-pop,maf-5-all-pops 610 chr1 3318196 3318198 rs142915850 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,SSMP, 2 -,AT, 171.000000,4837.000000, 0.034145,0.965855, 610 chr1 3318332 3318333 rs7551796 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 453.000000,4555.000000, 0.090455,0.909545, maf-5-some-pop 610 chr1 3318414 3318416 rs201955090 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,TISHKOFF, 2 -,AT, 190.000000,4818.000000, 0.037939,0.962061, 610 chr1 3318434 3318435 rs11577526 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2128.000000,2880.000000, 0.424920,0.575080, 610 chr1 3318446 3318448 rs56984298 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 10 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,AA, 1862.000000,3146.000000, 0.371805,0.628195, 610 chr1 3318531 3318532 rs11578011 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2880.000000,2128.000000, 0.575080,0.424920, maf-5-some-pop,maf-5-all-pops,microattr-tpa 610 chr1 3318713 3318714 rs5024246 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop 610 chr1 3318768 3318769 rs10909942 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2129.000000,2879.000000, 0.425120,0.574880, maf-5-some-pop,maf-5-all-pops 610 chr1 3318832 3318832 rs145611121 0 + - - -/C genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,C, 2133.000000,2875.000000, 0.425919,0.574081, 610 chr1 3318841 3318842 rs56148282 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 A,G, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop,maf-5-all-pops 610 chr1 3319018 3319019 rs72633323 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 347.000000,4661.000000, 0.069289,0.930711, maf-5-some-pop,maf-5-all-pops 610 chr1 3319243 3319244 rs78946683 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop,maf-5-all-pops 610 chr1 3319338 3319339 rs192554855 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 610 chr1 3319460 3319461 rs61756439 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,CANCER-GENOME,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 610 chr1 3319673 3319674 rs12562397 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2192.000000,2816.000000, 0.437700,0.562300, maf-5-some-pop,maf-5-all-pops 610 chr1 3319680 3319681 rs12562399 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2193.000000,2815.000000, 0.437899,0.562101, maf-5-some-pop,maf-5-all-pops 610 chr1 3319776 3319777 rs4471209 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1792.000000,3216.000000, 0.357827,0.642173, maf-5-some-pop 610 chr1 3319871 3319872 rs6664364 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2188.000000,2820.000000, 0.436901,0.563099, maf-5-some-pop,maf-5-all-pops 610 chr1 3319876 3319877 rs6664369 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2195.000000,2813.000000, 0.438299,0.561701, maf-5-some-pop,maf-5-all-pops 610 chr1 3319928 3319929 rs74048430 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,maf-5-all-pops 610 chr1 3320030 3320031 rs2483219 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 319.000000,4689.000000, 0.063698,0.936302, maf-5-some-pop,maf-5-all-pops 610 chr1 3320063 3320064 rs6669407 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2180.000000,2828.000000, 0.435304,0.564696, maf-5-some-pop,maf-5-all-pops 610 chr1 3320153 3320154 rs116042064 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 610 chr1 3320162 3320163 rs2493286 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 610 chr1 3320475 3320476 rs6657675 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 379.000000,4629.000000, 0.075679,0.924321, maf-5-some-pop 610 chr1 3320599 3320600 rs113511153 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 610 chr1 3320721 3320722 rs55820208 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 610 chr1 3320767 3320768 rs111542897 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 86.000000,4922.000000, 0.017173,0.982827, 610 chr1 3320888 3320889 rs75638413 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 610 chr1 3320931 3320932 rs79738908 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 A,C, 4761.000000,247.000000, 0.950679,0.049321, maf-5-some-pop,maf-5-all-pops 610 chr1 3320941 3320942 rs77316091 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 610 chr1 3321166 3321167 rs41315264 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA-UK,SI_EXO,SSMP,TISHKOFF, 2 A,C, 254.000000,4754.000000, 0.050719,0.949281, maf-5-some-pop 610 chr1 3321193 3321194 rs2483220 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,SC_JCM,TISHKOFF, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 610 chr1 3321714 3321715 rs6424076 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop 610 chr1 3321734 3321735 rs139620466 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,EVA-GONL,SSMP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 610 chr1 3321940 3321941 rs55931338 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SI_EXO,SSMP, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 610 chr1 3322138 3322139 rs61745281 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,CLINSEQ_SNP,CORNELL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop 610 chr1 3322382 3322383 rs79350670 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop,maf-5-all-pops 610 chr1 3322429 3322430 rs77862416 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop,maf-5-all-pops 610 chr1 3322997 3322998 rs112107058 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 610 chr1 3323024 3323025 rs12737202 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 863.000000,4145.000000, 0.172324,0.827676, maf-5-some-pop,maf-5-all-pops 610 chr1 3323108 3323109 rs2483222 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1310.000000,3698.000000, 0.261581,0.738419, maf-5-some-pop,maf-5-all-pops 610 chr1 3323145 3323146 rs551041157 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 409.000000,4599.000000, 0.081669,0.918331, 610 chr1 3323196 3323197 rs2483223 0 + T T G/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1201.000000,3807.000000, 0.239816,0.760184, maf-5-some-pop,maf-5-all-pops 610 chr1 3323615 3323616 rs2483224 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,T, 4577.000000,431.000000, 0.913938,0.086062, maf-5-some-pop,maf-5-all-pops 610 chr1 3323673 3323674 rs56394425 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 4194.000000,814.000000, 0.837460,0.162540, maf-5-some-pop,maf-5-all-pops 610 chr1 3324011 3324012 rs55726144 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP, 2 A,G, 251.000000,4757.000000, 0.050120,0.949880, maf-5-some-pop 610 chr1 3324061 3324062 rs77653881 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 610 chr1 3324089 3324090 rs115030830 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 610 chr1 3324242 3324243 rs75606649 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,maf-5-all-pops 610 chr1 3324326 3324327 rs56021162 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop,maf-5-all-pops 610 chr1 3324432 3324433 rs2493302 0 - A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 610 chr1 3324666 3324667 rs72633329 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4715.000000,293.000000, 0.941494,0.058506, maf-5-some-pop,maf-5-all-pops 610 chr1 3325036 3325037 rs2483225 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2661.000000,2347.000000, 0.531350,0.468650, maf-5-some-pop,maf-5-all-pops 610 chr1 3325060 3325061 rs114304418 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 610 chr1 3325133 3325134 rs145514487 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 610 chr1 3325143 3325144 rs12097446 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop,maf-5-all-pops 610 chr1 3325259 3325260 rs12063572 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3689.000000,1319.000000, 0.736621,0.263379, maf-5-some-pop,maf-5-all-pops 610 chr1 3325297 3325298 rs115120278 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 610 chr1 3325329 3325330 rs2493301 0 - G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 610 chr1 3325333 3325334 rs12063613 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 3660.000000,1348.000000, 0.730831,0.269169, 610 chr1 3325355 3325355 rs538500653 0 + - - -/GT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GT, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3325361 3325361 rs578204011 0 + - - -/GT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GT, 2923.000000,2085.000000, 0.583666,0.416334, 610 chr1 3325419 3325419 rs34306698 0 + - - -/AT genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,ABI,BL,EVA-GONL,GMI,HGSV,LUNTER,TISHKOFF, 2 -,AT, 2806.000000,2202.000000, 0.560304,0.439696, 610 chr1 3325493 3325494 rs12065021 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1759.000000,3249.000000, 0.351238,0.648762, maf-5-some-pop,maf-5-all-pops 610 chr1 3325579 3325580 rs7521376 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 610 chr1 3325649 3325650 rs7512522 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 610 chr1 3325658 3325659 rs35396425 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3437.000000,1571.000000, 0.686302,0.313698, maf-5-some-pop,maf-5-all-pops 610 chr1 3325667 3325668 rs55929648 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop,maf-5-all-pops 610 chr1 3325692 3325696 rs61650876 0 + ATGT ATGT -/ATGT genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,ATGT, 840.000000,4168.000000, 0.167732,0.832268, 610 chr1 3325721 3325722 rs549914581 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4707.000000,301.000000, 0.939896,0.060104, 610 chr1 3325800 3325801 rs370542037 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 69.000000,4939.000000, 0.013778,0.986222, 610 chr1 3325877 3325878 rs59691927 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4161.000000,847.000000, 0.830871,0.169129, maf-5-some-pop,maf-5-all-pops 610 chr1 3326093 3326094 rs36070715 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop,maf-5-all-pops 610 chr1 3326133 3326134 rs76716120 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop 610 chr1 3326141 3326142 rs60965010 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1308.000000,3700.000000, 0.261182,0.738818, maf-5-some-pop,maf-5-all-pops 610 chr1 3326187 3326188 rs59831144 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 A,G, 3391.000000,1617.000000, 0.677117,0.322883, maf-5-some-pop,maf-5-all-pops 610 chr1 3326301 3326303 rs199507963 0 + GT GT -/GT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,GT, 114.000000,4894.000000, 0.022764,0.977236, 610 chr1 3326351 3326353 rs372799321 0 + GT GT -/GT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,SSIP,SSMP, 2 -,GT, 73.000000,4935.000000, 0.014577,0.985423, 610 chr1 3326411 3326413 rs375769462 0 + GT GT -/GT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,SSMP, 2 -,GT, 145.000000,4863.000000, 0.028954,0.971046, 610 chr1 3326478 3326480 rs34133894 0 + GT GT -/GT genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 -,GT, 1311.000000,3697.000000, 0.261781,0.738219, 610 chr1 3326549 3326550 rs578235794 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 742.000000,4266.000000, 0.148163,0.851837, 610 chr1 3326550 3326550 rs539247845 0 + - - -/G genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,G, 4836.000000,172.000000, 0.965655,0.034345, 610 chr1 3326580 3326581 rs4648493 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 855.000000,4153.000000, 0.170727,0.829273, maf-5-some-pop,maf-5-all-pops 610 chr1 3326586 3326587 rs111524518 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 610 chr1 3326599 3326600 rs369856203 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4706.000000,302.000000, 0.939696,0.060304, 610 chr1 3326616 3326619 rs60842130 0 + GTG GTG -/GTG genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 -,GTG, 481.000000,4527.000000, 0.096046,0.903954, 610 chr1 3326639 3326640 rs4648494 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2387.000000,2621.000000, 0.476637,0.523363, maf-5-some-pop,maf-5-all-pops 610 chr1 3326682 3326683 rs144154117 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 4932.000000,76.000000, 0.984824,0.015176, 610 chr1 3326686 3326687 rs72851304 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 610 chr1 3326772 3326773 rs80136453 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 610 chr1 3327548 3327549 rs1106270 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2565.000000,2443.000000, 0.512181,0.487819, maf-5-some-pop,maf-5-all-pops 610 chr1 3327601 3327602 rs1106271 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 2649.000000,2359.000000, 0.528954,0.471046, maf-5-some-pop,maf-5-all-pops 610 chr1 3327602 3327603 rs2483227 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_JCM,SC_SNP, 2 G,T, 4948.000000,60.000000, 0.988019,0.011981, 610 chr1 3327621 3327623 rs3036506 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,AT, 519.000000,4489.000000, 0.103634,0.896366, 610 chr1 3327804 3327805 rs57382922 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, 610 chr1 3327870 3327871 rs116395931 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop,maf-5-all-pops 610 chr1 3328305 3328306 rs34992735 0 + G G A/G genomic single by-cluster 0.025312 0.109615 coding-synon exact 1 2 APPLERA_GI,NHLBI-ESP, 2 A,G, 1.000000,77.000000, 0.012820,0.987179, 610 chr1 3328497 3328498 rs35579804 0 + C C C/T genomic single by-frequency 0.132653 0.220748 coding-synon exact 1 1 APPLERA_GI, 2 C,T, 26.000000,2.000000, 0.928571,0.071429, maf-5-some-pop,maf-5-all-pops 610 chr1 3329262 3329263 rs115226069 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4739.000000,269.000000, 0.946286,0.053714, 610 chr1 3329580 3329581 rs72633334 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, 610 chr1 3329832 3329847 rs140554384 0 + GGAGCCACAGCGGCA GGAGCCACAGCGGCA -/GGAGCCACAGCGGCA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GGAGCCACAGCGGCA, 75.000000,4933.000000, 0.014976,0.985024, 610 chr1 3330104 3330105 rs567813709 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 -,C, 222.000000,4786.000000, 0.044329,0.955671, 610 chr1 3330191 3330192 rs112206206 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop,maf-5-all-pops 610 chr1 3330259 3330260 rs72633335 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4446.000000,562.000000, 0.887780,0.112220, maf-5-some-pop,maf-5-all-pops 610 chr1 3330270 3330271 rs79938268 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, 610 chr1 3330286 3330287 rs76856821 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 967.000000,4041.000000, 0.193091,0.806909, maf-5-some-pop,maf-5-all-pops 610 chr1 3330389 3330390 rs72851311 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3820.000000,1188.000000, 0.762780,0.237220, maf-5-some-pop,maf-5-all-pops 610 chr1 3330612 3330613 rs77239671 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 610 chr1 3330746 3330747 rs11578951 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, 610 chr1 3330886 3330887 rs56353807 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,HGSV,SSMP, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 610 chr1 3330995 3330996 rs76153297 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop,maf-5-all-pops 610 chr1 3331551 3331552 rs60973157 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop 610 chr1 3331732 3331733 rs2483228 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2315.000000,2693.000000, 0.462260,0.537740, maf-5-some-pop,maf-5-all-pops 610 chr1 3332211 3332212 rs111652194 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 610 chr1 3332724 3332725 rs75063997 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 273.000000,4735.000000, 0.054513,0.945487, 610 chr1 3333909 3333910 rs147328263 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 153.000000,4855.000000, 0.030551,0.969449, 610 chr1 3334109 3334110 rs77830654 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3334492 3334493 rs59135929 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 610 chr1 3334891 3334892 rs2483230 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 254.000000,4754.000000, 0.050719,0.949281, maf-5-some-pop 610 chr1 3335361 3335362 rs118065753 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,NHLBI-ESP,SSMP, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 610 chr1 3335398 3335399 rs114150379 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop,maf-5-all-pops 610 chr1 3335858 3335859 rs117111933 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, 610 chr1 3335873 3335874 rs117505164 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 610 chr1 3336120 3336121 rs116874453 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 610 chr1 3336372 3336373 rs74893770 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 610 chr1 3337355 3337356 rs77909219 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop,maf-5-all-pops 610 chr1 3337620 3337621 rs72633337 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 610 chr1 3337635 3337636 rs11579873 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 347.000000,4661.000000, 0.069289,0.930711, maf-5-some-pop 610 chr1 3338998 3338999 rs34651898 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ABI,ENSEMBL, 2 C,T, 59.000000,4949.000000, 0.011781,0.988219, 610 chr1 3339070 3339071 rs2483231 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 610 chr1 3339092 3339093 rs79971748 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 610 chr1 3339184 3339185 rs78765672 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 371.000000,4637.000000, 0.074082,0.925919, maf-5-some-pop,maf-5-all-pops 610 chr1 3339354 3339355 rs9783034 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4418.000000,590.000000, 0.882188,0.117812, maf-5-some-pop,maf-5-all-pops 610 chr1 3339428 3339429 rs140486118 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 610 chr1 3339500 3339501 rs9783077 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4752.000000,256.000000, 0.948882,0.051118, maf-5-some-pop,maf-5-all-pops 610 chr1 3339627 3339628 rs138638936 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3339879 3339880 rs72633339 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4935.000000,73.000000, 0.985423,0.014577, 610 chr1 3339920 3339921 rs72851332 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop,maf-5-all-pops 610 chr1 3340067 3340068 rs112919129 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 610 chr1 3340115 3340116 rs2483232 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop 610 chr1 3340234 3340235 rs17400178 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN, 2 G,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop 610 chr1 3340258 3340259 rs59262321 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 610 chr1 3340268 3340269 rs4648385 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1401.000000,3607.000000, 0.279752,0.720248, maf-5-some-pop,maf-5-all-pops 610 chr1 3340346 3340347 rs2483233 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, 610 chr1 3340666 3340667 rs2483234 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 865.000000,4143.000000, 0.172724,0.827276, maf-5-some-pop 610 chr1 3340758 3340759 rs2483235 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 930.000000,4078.000000, 0.185703,0.814297, maf-5-some-pop 610 chr1 3340854 3340855 rs4648500 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2673.000000,2335.000000, 0.533746,0.466254, maf-5-some-pop 610 chr1 3340900 3340901 rs75790988 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,SSMP, 2 C,T, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 610 chr1 3341353 3341353 rs200799050 0 + - - -/GGGAGCTGGTCT genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GGGAGCTGGTCT, 4843.000000,165.000000, 0.967053,0.032947, 610 chr1 3341539 3341540 rs2483236 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2043.000000,2965.000000, 0.407947,0.592053, maf-5-some-pop,maf-5-all-pops 610 chr1 3341565 3341566 rs72851341 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 4940.000000,68.000000, 0.986422,0.013578, 610 chr1 3341627 3341628 rs10909943 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 610 chr1 3341795 3341796 rs55704954 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, 610 chr1 3341843 3341844 rs183192346 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, 610 chr1 3342026 3342027 rs7546986 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 610 chr1 3342060 3342061 rs117270255 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 610 chr1 3342108 3342109 rs41303861 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,CLINSEQ_SNP,ENSEMBL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop,maf-5-all-pops 610 chr1 3342363 3342364 rs11805974 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop 610 chr1 3342529 3342530 rs2244013 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1887.000000,3121.000000, 0.376797,0.623203, maf-5-some-pop,maf-5-all-pops 610 chr1 3342967 3342968 rs75861985 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop,maf-5-all-pops 610 chr1 3343127 3343128 rs72851346 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop,maf-5-all-pops 610 chr1 3343284 3343285 rs12029107 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 610 chr1 3343487 3343488 rs2483237 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,G, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop,maf-5-all-pops 610 chr1 3343494 3343495 rs2493279 0 - T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 610 chr1 3343505 3343506 rs80243652 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 610 chr1 3343801 3343802 rs12124567 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 1365.000000,3643.000000, 0.272564,0.727436, maf-5-some-pop,maf-5-all-pops 610 chr1 3343934 3343935 rs55833861 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 899.000000,4109.000000, 0.179513,0.820487, maf-5-some-pop,maf-5-all-pops 610 chr1 3344059 3344060 rs56196310 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4072.000000,936.000000, 0.813099,0.186901, maf-5-some-pop,maf-5-all-pops 610 chr1 3344126 3344127 rs2483238 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4191.000000,817.000000, 0.836861,0.163139, maf-5-some-pop 610 chr1 3344214 3344215 rs2483239 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3756.000000,1252.000000, 0.750000,0.250000, maf-5-some-pop 610 chr1 3344460 3344461 rs114021459 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 610 chr1 3344475 3344476 rs61759212 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4419.000000,589.000000, 0.882388,0.117612, maf-5-some-pop,maf-5-all-pops 610 chr1 3344607 3344608 rs79430889 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 350.000000,4658.000000, 0.069888,0.930112, maf-5-some-pop,maf-5-all-pops 610 chr1 3344738 3344739 rs12754361 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 4507.000000,501.000000, 0.899960,0.100040, 610 chr1 3344759 3344760 rs181292382 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 610 chr1 3344807 3344808 rs113214662 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3344876 3344877 rs58043752 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 511.000000,4497.000000, 0.102037,0.897963, 610 chr1 3344880 3344881 rs144363650 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, 610 chr1 3344882 3344883 rs2483241 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SC_JCM,SSMP, 2 A,G, 4085.000000,923.000000, 0.815695,0.184305, 610 chr1 3344923 3344925 rs142698646 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,AA, 173.000000,4835.000000, 0.034545,0.965455, 610 chr1 3345144 3345145 rs2483242 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2844.000000,2164.000000, 0.567891,0.432109, maf-5-some-pop,maf-5-all-pops 610 chr1 3345349 3345350 rs557550163 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSIP, 2 C,G, 202.000000,4806.000000, 0.040335,0.959665, 610 chr1 3345439 3345440 rs72851354 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 610 chr1 3345661 3345662 rs78881224 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 610 chr1 3345691 3345692 rs34869178 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BL,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 536.000000,4472.000000, 0.107029,0.892971, 610 chr1 3345727 3345728 rs2483243 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF, 2 A,G, 360.000000,4648.000000, 0.071885,0.928115, maf-5-some-pop,maf-5-all-pops 610 chr1 3345886 3345887 rs72851355 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 610 chr1 3346402 3346403 rs11583353 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4468.000000,540.000000, 0.892173,0.107827, maf-5-some-pop 610 chr1 3346834 3346835 rs11805423 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 610 chr1 3346991 3346992 rs10909944 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_SNP, 2 A,G, 202.000000,4806.000000, 0.040335,0.959665, maf-5-some-pop 610 chr1 3347085 3347086 rs6702700 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,BUSHMAN, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 610 chr1 3347194 3347195 rs116563480 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 610 chr1 3347841 3347842 rs113059246 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 610 chr1 3348180 3348182 rs201925918 0 + CC CC -/CC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CC, 264.000000,4744.000000, 0.052716,0.947284, 610 chr1 3348185 3348185 rs199718252 0 + - - -/GGGA genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GGGA, 4744.000000,264.000000, 0.947284,0.052716, 610 chr1 3348267 3348268 rs2493274 0 - G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 610 chr1 3348280 3348281 rs75521395 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,LUNTER,SSMP, 2 -,C, 355.000000,4653.000000, 0.070887,0.929113, 610 chr1 3348302 3348303 rs7551599 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,TISHKOFF,WI_SSAHASNP, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 610 chr1 3348814 3348815 rs76162834 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4681.000000,327.000000, 0.934704,0.065296, maf-5-some-pop,maf-5-all-pops 610 chr1 3349077 3349078 rs2483244 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1568.000000,3440.000000, 0.313099,0.686901, maf-5-some-pop 610 chr1 3349132 3349133 rs75674300 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 610 chr1 3349380 3349381 rs2483245 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,JMKIDD_LAB,SC_JCM,SC_SNP,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,maf-5-all-pops 610 chr1 3349401 3349402 rs114343189 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, 610 chr1 3349543 3349544 rs7349183 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1368.000000,3640.000000, 0.273163,0.726837, maf-5-some-pop,maf-5-all-pops 610 chr1 3349635 3349636 rs2483246 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2904.000000,2104.000000, 0.579872,0.420128, maf-5-some-pop,maf-5-all-pops 610 chr1 3349651 3349652 rs78855916 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 610 chr1 3349774 3349775 rs75978000 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 610 chr1 3349797 3349798 rs74048472 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 610 chr1 3349864 3349865 rs28685204 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,SSAHASNP, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 610 chr1 3349899 3349900 rs34315398 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 610 chr1 3349964 3349965 rs2483247 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,SC_JCM,SSMP,TISHKOFF, 2 A,G, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop,maf-5-all-pops 610 chr1 3350094 3350095 rs28551116 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,HGSV,SSAHASNP,SSMP, 2 C,T, 2075.000000,2933.000000, 0.414337,0.585663, 610 chr1 3350104 3350105 rs560368086 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, 610 chr1 3350133 3350134 rs10752734 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP, 2 C,T, 2336.000000,2672.000000, 0.466454,0.533546, 610 chr1 3350154 3350159 rs542402845 0 + CGCGC CGCGC -/CGCGC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CGCGC, 366.000000,4642.000000, 0.073083,0.926917, 610 chr1 3350161 3350162 rs58330968 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,T, 4648.000000,360.000000, 0.928115,0.071885, 610 chr1 3350162 3350163 rs60119082 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,G, 4658.000000,350.000000, 0.930112,0.069888, 610 chr1 3350408 3350409 rs3748837 0 + G G A/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 11 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,YUSUKE, 2 A,G, 492.000000,4516.000000, 0.098243,0.901757, maf-5-some-pop 610 chr1 3350414 3350415 rs202152655 0 + A A A/C genomic single by-frequency 0.034387 0.126535 near-gene-3,untranslated-3 exact 1 NonIntegerChromCount 1 CLINSEQ_SNP, 2 A,C, 282.959991,5.040000, 0.982500,0.017500, 610 chr1 3350447 3350448 rs2483248 0 + C C C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,SC_JCM,TISHKOFF, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop,maf-5-all-pops 610 chr1 3351120 3351121 rs114512351 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 610 chr1 3351163 3351164 rs114972083 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 610 chr1 3351366 3351367 rs72851364 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 610 chr1 3351379 3351380 rs59919662 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,HGSV,ILLUMINA,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 610 chr1 3352008 3352009 rs12037306 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,G, 487.000000,4521.000000, 0.097244,0.902756, maf-5-some-pop 610 chr1 3352161 3352161 rs34485545 0 + - - -/A genomic insertion unknown 0 0 untranslated-3 between 1 7 1000GENOMES,ABI,BUSHMAN,EVA-GONL,LUNTER,PJP,SSMP, 2 -,A, 4572.000000,436.000000, 0.912939,0.087061, 610 chr1 3352174 3352175 rs79408112 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 610 chr1 3352201 3352202 rs12040065 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop 610 chr1 3352227 3352228 rs12735779 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,G, 583.000000,4425.000000, 0.116414,0.883586, maf-5-some-pop,maf-5-all-pops 610 chr1 3352327 3352328 rs12040797 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop 610 chr1 3352415 3352416 rs72851368 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF, 2 A,G, 285.000000,4723.000000, 0.056909,0.943091, maf-5-some-pop,maf-5-all-pops 610 chr1 3352502 3352503 rs1537404 0 - G G C/G genomic single unknown 0 0 untranslated-3 exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 610 chr1 3352507 3352508 rs74048475 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 A,G, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 610 chr1 3352763 3352764 rs35439737 0 + T T -/T genomic deletion unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,BL,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 4326.000000,682.000000, 0.863818,0.136182, 610 chr1 3352864 3352865 rs35015571 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 C,T, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop,maf-5-all-pops 610 chr1 3352871 3352872 rs2236518 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,C, 2696.000000,2312.000000, 0.538339,0.461661, maf-5-some-pop,maf-5-all-pops 610 chr1 3353315 3353316 rs78409374 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 610 chr1 3353517 3353518 rs60914105 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop 610 chr1 3353636 3353637 rs35837267 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 610 chr1 3353749 3353750 rs12728419 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP, 2 C,T, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 610 chr1 3353959 3353960 rs111606901 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 115.000000,4893.000000, 0.022963,0.977037, 610 chr1 3354594 3354595 rs2483249 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 24 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4495.000000,513.000000, 0.897564,0.102436, maf-5-some-pop 610 chr1 3354771 3354772 rs80306463 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, 610 chr1 3355170 3355171 rs72851376 0 + T T G/T genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 610 chr1 3355261 3355262 rs55729137 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 610 chr1 3356026 3356027 rs12078391 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 300.000000,4708.000000, 0.059904,0.940096, maf-5-some-pop,maf-5-all-pops 610 chr1 3356404 3356405 rs2483250 0 + A A A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1129.000000,3879.000000, 0.225439,0.774561, maf-5-some-pop 610 chr1 3356523 3356525 rs141857804 0 + CC CC -/CC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB, 2 -,CC, 253.000000,4755.000000, 0.050519,0.949481, 610 chr1 3356527 3356528 rs35283724 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4648.000000,360.000000, 0.928115,0.071885, 610 chr1 3356632 3356633 rs10797391 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,SC_SNP,SSMP, 2 C,T, 3086.000000,1922.000000, 0.616214,0.383786, maf-5-some-pop,maf-5-all-pops 610 chr1 3356634 3356635 rs2483251 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 4535.000000,473.000000, 0.905551,0.094449, maf-5-some-pop 610 chr1 3356794 3356795 rs2493262 0 - C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 610 chr1 3357014 3357015 rs12745100 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4207.000000,801.000000, 0.840056,0.159944, maf-5-some-pop,maf-5-all-pops 610 chr1 3357208 3357209 rs75250207 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 A,G, 275.000000,4733.000000, 0.054912,0.945088, maf-5-some-pop,maf-5-all-pops 610 chr1 3357824 3357825 rs75598144 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 610 chr1 3357935 3357937 rs149957174 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,AT, 110.000000,4898.000000, 0.021965,0.978035, 610 chr1 3358035 3358036 rs10797392 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3069.000000,1939.000000, 0.612819,0.387181, maf-5-some-pop,maf-5-all-pops 610 chr1 3358269 3358269 rs55866341 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 548.000000,4460.000000, 0.109425,0.890575, 610 chr1 3358696 3358697 rs77030459 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 610 chr1 3358888 3358889 rs74048487 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 610 chr1 3358921 3358922 rs2483252 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 610 chr1 3358931 3358932 rs35536718 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4738.000000,270.000000, 0.946086,0.053914, maf-5-some-pop 610 chr1 3359179 3359180 rs2493261 0 - C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 610 chr1 3359281 3359282 rs56009352 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 610 chr1 3359788 3359789 rs565069461 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 610 chr1 3359982 3359983 rs11588737 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3692.000000,1316.000000, 0.737220,0.262780, maf-5-some-pop,maf-5-all-pops 610 chr1 3360035 3360036 rs9424295 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3816.000000,1192.000000, 0.761981,0.238019, maf-5-some-pop,maf-5-all-pops 610 chr1 3360793 3360794 rs72633349 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4854.000000,154.000000, 0.969249,0.030751, 610 chr1 3360810 3360811 rs2483253 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,SC_JCM,TISHKOFF, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 610 chr1 3361013 3361014 rs2493260 0 - A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 610 chr1 3361303 3361304 rs2483254 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4462.000000,546.000000, 0.890974,0.109026, maf-5-some-pop 610 chr1 3361395 3361396 rs59291450 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 610 chr1 3361807 3361808 rs61759222 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 167.000000,4841.000000, 0.033347,0.966653, 610 chr1 3361814 3361815 rs61759223 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 167.000000,4841.000000, 0.033347,0.966653, 610 chr1 3362090 3362091 rs61759224 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4786.000000,222.000000, 0.955671,0.044329, 610 chr1 3362146 3362147 rs75383732 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 610 chr1 3362352 3362353 rs56215222 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,BILGI_BIOE,GMI,HGSV,PJP, 2 -,T, 1231.000000,3777.000000, 0.245807,0.754193, 610 chr1 3362372 3362373 rs55781247 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 610 chr1 3362572 3362573 rs12092300 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4580.000000,428.000000, 0.914537,0.085463, 610 chr1 3362801 3362802 rs72633352 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 105.000000,4903.000000, 0.020967,0.979034, 610 chr1 3362806 3362807 rs80336315 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop,maf-5-all-pops 610 chr1 3363002 3363003 rs11590296 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 480.000000,4528.000000, 0.095847,0.904153, maf-5-some-pop 610 chr1 3363010 3363011 rs11810934 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 610 chr1 3363032 3363032 rs543528425 0 + - - -/AAAAAC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AAAAAC, 4894.000000,114.000000, 0.977236,0.022764, 610 chr1 3363235 3363236 rs11808277 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 610 chr1 3363392 3363393 rs12088091 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SC_SNP, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 610 chr1 3363466 3363467 rs10158332 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 4877.000000,131.000000, 0.973842,0.026158, 610 chr1 3363485 3363486 rs114344935 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 610 chr1 3363588 3363589 rs10157570 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 610 chr1 3363800 3363801 rs74555200 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop,maf-5-all-pops 610 chr1 3363801 3363802 rs2483255 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,T, 482.000000,4526.000000, 0.096246,0.903754, maf-5-some-pop,maf-5-all-pops 610 chr1 3363961 3363961 rs34792713 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,ABI,BILGI_BIOE,GMI,SSMP, 2 -,T, 4565.000000,443.000000, 0.911542,0.088459, 610 chr1 3364486 3364487 rs11808779 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4605.000000,403.000000, 0.919529,0.080471, maf-5-some-pop 610 chr1 3364519 3364520 rs61759225 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,TISHKOFF, 2 C,T, 129.000000,4879.000000, 0.025759,0.974241, 610 chr1 3364736 3364737 rs2263010 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4524.000000,484.000000, 0.903355,0.096645, maf-5-some-pop 610 chr1 3364968 3364969 rs61759226 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4877.000000,131.000000, 0.973842,0.026158, 610 chr1 3365252 3365253 rs61759227 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 610 chr1 3365414 3365415 rs61494104 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 290.000000,4718.000000, 0.057907,0.942093, maf-5-some-pop,maf-5-all-pops 610 chr1 3365419 3365420 rs61759228 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop,maf-5-all-pops 610 chr1 3365868 3365868 rs57629262 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 -,T, 3447.000000,1561.000000, 0.688299,0.311701, 610 chr1 3365953 3365954 rs58176099 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 610 chr1 3366012 3366013 rs56023610 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4573.000000,435.000000, 0.913139,0.086861, 610 chr1 3366111 3366112 rs79374157 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 610 chr1 3366132 3366133 rs55913848 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,TISHKOFF, 2 G,T, 4876.000000,132.000000, 0.973642,0.026358, 610 chr1 3366313 3366314 rs12086322 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop 610 chr1 3366492 3366493 rs2096102 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1567.000000,3441.000000, 0.312899,0.687101, maf-5-some-pop,maf-5-all-pops 610 chr1 3366531 3366531 rs146519710 0 + - - -/TA genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BILGI_BIOE,LUNTER, 2 -,TA, 3482.000000,1526.000000, 0.695288,0.304712, 610 chr1 3366552 3366553 rs376543350 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,EVA-GONL, 2 A,G, 4920.000000,88.000000, 0.982428,0.017572, 610 chr1 3366600 3366601 rs201181020 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 610 chr1 3366739 3366740 rs182161273 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 610 chr1 3367011 3367013 rs150329777 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AT, 223.000000,4785.000000, 0.044529,0.955471, 610 chr1 3367351 3367351 rs372318858 0 + - - -/TACTTCAGCCCTTCACCTAGGAC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,TACTTCAGCCCTTCACCTAGGAC, 4786.000000,222.000000, 0.955671,0.044329, 610 chr1 3367779 3367780 rs2487679 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop 610 chr1 3367923 3367924 rs6689726 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 610 chr1 3368034 3368035 rs6697669 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 1323.000000,3685.000000, 0.264177,0.735823, maf-5-some-pop,maf-5-all-pops 610 chr1 3368130 3368131 rs4648501 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3161.000000,1847.000000, 0.631190,0.368810, maf-5-some-pop,maf-5-all-pops 610 chr1 3368340 3368341 rs55902179 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 4387.000000,621.000000, 0.875998,0.124002, maf-5-some-pop,maf-5-all-pops 610 chr1 3368359 3368360 rs145533668 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 55.000000,4953.000000, 0.010982,0.989018, 610 chr1 3368447 3368448 rs150566617 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,G, 382.000000,4626.000000, 0.076278,0.923722, 610 chr1 3368892 3368893 rs138073733 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3369354 3369355 rs535668936 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3369387 3369388 rs60162878 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 610 chr1 3369552 3369553 rs34037774 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,LUNTER,SSMP,TISHKOFF, 2 -,G, 539.000000,4469.000000, 0.107628,0.892372, 610 chr1 3369819 3369820 rs56164540 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4627.000000,381.000000, 0.923922,0.076078, maf-5-some-pop 610 chr1 3369823 3369824 rs34681041 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,ABI,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3360.000000,1648.000000, 0.670927,0.329073, maf-5-some-pop,maf-5-all-pops 610 chr1 3369846 3369847 rs55665824 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 A,G, 4627.000000,381.000000, 0.923922,0.076078, maf-5-some-pop 610 chr1 3369848 3369849 rs60955475 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 610 chr1 3371268 3371269 rs140930781 0 + G G C/G genomic single unknown 0 0 untranslated-5 exact 1 1 1000GENOMES, 2 C,G, 111.000000,4897.000000, 0.022164,0.977835, 610 chr1 3371408 3371409 rs142378881 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 489.000000,4519.000000, 0.097644,0.902356, 610 chr1 3371469 3371470 rs151279796 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 519.000000,4489.000000, 0.103634,0.896366, 610 chr1 3371611 3371612 rs115427362 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop 610 chr1 3371861 3371862 rs75368965 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 488.000000,4520.000000, 0.097444,0.902556, maf-5-some-pop,maf-5-all-pops 610 chr1 3371862 3371863 rs77136906 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 488.000000,4520.000000, 0.097444,0.902556, maf-5-some-pop,maf-5-all-pops 610 chr1 3371954 3371955 rs76910657 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 610 chr1 3371980 3371981 rs55858614 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,G, 190.000000,4818.000000, 0.037939,0.962061, 610 chr1 3372470 3372471 rs10909946 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3451.000000,1557.000000, 0.689097,0.310903, maf-5-some-pop,maf-5-all-pops 610 chr1 3372668 3372669 rs61759232 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 183.000000,4825.000000, 0.036541,0.963458, 610 chr1 3372856 3372857 rs72633361 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4879.000000,129.000000, 0.974241,0.025759, 610 chr1 3373474 3373475 rs12568351 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4627.000000,381.000000, 0.923922,0.076078, maf-5-some-pop 610 chr1 3373610 3373611 rs56365322 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB, 2 C,G, 4886.000000,122.000000, 0.975639,0.024361, 610 chr1 3374016 3374017 rs60194754 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop,maf-5-all-pops 610 chr1 3374017 3374018 rs11809235 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 381.000000,4627.000000, 0.076078,0.923922, maf-5-some-pop 610 chr1 3374153 3374154 rs112469297 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,C, 111.000000,4897.000000, 0.022164,0.977835, 610 chr1 3374157 3374158 rs11809264 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, 610 chr1 3374383 3374384 rs12758368 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3354.000000,1654.000000, 0.669728,0.330272, maf-5-some-pop,maf-5-all-pops 610 chr1 3374942 3374943 rs56242281 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 4825.000000,183.000000, 0.963458,0.036541, 610 chr1 3375367 3375368 rs61759235 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, 610 chr1 3375722 3375723 rs61759236 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4883.000000,125.000000, 0.975040,0.024960, 610 chr1 3375771 3375772 rs115613801 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3375984 3375986 rs151090630 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,AG, 242.000000,4766.000000, 0.048323,0.951677, 610 chr1 3376192 3376193 rs61759237 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop,maf-5-all-pops 610 chr1 3376532 3376533 rs12059504 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 182.000000,4826.000000, 0.036342,0.963658, 610 chr1 3376737 3376738 rs12145462 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 610 chr1 3376897 3376898 rs143540794 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,MPI_MOLGEN, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 610 chr1 3377122 3377123 rs59183260 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop 610 chr1 3377287 3377288 rs12568681 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 379.000000,4629.000000, 0.075679,0.924321, maf-5-some-pop 610 chr1 3377498 3377509 rs113476267 0 + GAGCAGGGACA GAGCAGGGACA -/GAGCAGGGACA genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,GAGCAGGGACA, 436.000000,4572.000000, 0.087061,0.912939, 610 chr1 3378193 3378194 rs192519255 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3378410 3378411 rs181370251 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 610 chr1 3378629 3378630 rs74050510 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 610 chr1 3378662 3378663 rs576803627 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 610 chr1 3379323 3379324 rs189895149 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3379530 3379531 rs186097861 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 610 chr1 3380336 3380337 rs41315270 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,SI_EXO,SSMP,TISHKOFF, 2 A,G, 374.000000,4634.000000, 0.074680,0.925319, maf-5-some-pop 610 chr1 3380461 3380462 rs72852405 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 371.000000,4637.000000, 0.074082,0.925919, maf-5-some-pop,maf-5-all-pops 610 chr1 3380504 3380505 rs56391824 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 374.000000,4634.000000, 0.074680,0.925319, maf-5-some-pop 610 chr1 3380523 3380524 rs548969358 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3380715 3380717 rs35597752 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,ABI,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,TG, 3182.000000,1826.000000, 0.635383,0.364617, 610 chr1 3380981 3380982 rs192466474 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 610 chr1 3381155 3381156 rs534713560 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 610 chr1 3381488 3381489 rs11578350 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,TISHKOFF, 2 C,T, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop 610 chr1 3381586 3381587 rs75158030 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4721.000000,287.000000, 0.942692,0.057308, maf-5-some-pop,maf-5-all-pops 610 chr1 3381697 3381698 rs12562167 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 497.000000,4511.000000, 0.099241,0.900759, maf-5-some-pop 610 chr1 3382134 3382135 rs9787074 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4538.000000,470.000000, 0.906150,0.093850, maf-5-some-pop 610 chr1 3382179 3382180 rs10909947 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1596.000000,3412.000000, 0.318690,0.681310, maf-5-some-pop,maf-5-all-pops 610 chr1 3382329 3382330 rs12562417 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop 610 chr1 3383176 3383177 rs2248943 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 483.000000,4525.000000, 0.096446,0.903554, maf-5-some-pop 610 chr1 3383196 3383197 rs76263003 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 610 chr1 3383285 3383286 rs12047741 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 458.000000,4550.000000, 0.091454,0.908546, maf-5-some-pop,maf-5-all-pops 610 chr1 3383297 3383298 rs59670210 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 610 chr1 3383664 3383665 rs7550948 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3415.000000,1593.000000, 0.681909,0.318091, maf-5-some-pop,maf-5-all-pops 610 chr1 3383897 3383898 rs6424078 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 25 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 701.000000,4307.000000, 0.139976,0.860024, maf-5-some-pop,maf-5-all-pops 610 chr1 3383992 3383993 rs116539894 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4941.000000,67.000000, 0.986621,0.013379, 610 chr1 3384051 3384052 rs45512802 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,SI_EXO,TISHKOFF, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 610 chr1 3384230 3384231 rs6667361 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1431.000000,3577.000000, 0.285743,0.714257, maf-5-some-pop,maf-5-all-pops 610 chr1 3384374 3384375 rs58762663 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV, 2 A,G, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop,maf-5-all-pops 610 chr1 3384605 3384606 rs7522513 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1552.000000,3456.000000, 0.309904,0.690096, maf-5-some-pop,maf-5-all-pops 610 chr1 3384757 3384758 rs75268393 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 610 chr1 3385014 3385015 rs7554513 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SI_EXO,WI_SSAHASNP, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 610 chr1 3385224 3385225 rs41315276 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SI_EXO,SSMP, 2 C,G, 241.000000,4767.000000, 0.048123,0.951877, maf-5-some-pop,maf-5-all-pops 610 chr1 3385914 3385915 rs117479013 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop,maf-5-all-pops 610 chr1 3386066 3386067 rs553627615 0 + T T G/T genomic single unknown 0 0 missense exact 1 2 1000GENOMES,SSIP, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 610 chr1 3386088 3386089 rs35754076 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,APPLERA_GI,CANCER-GENOME,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop 610 chr1 3386530 3386531 rs72852418 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 610 chr1 3386657 3386658 rs80192986 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop,maf-5-all-pops 610 chr1 3386865 3386879 rs139076740 0 + GTGTCTGCACGGGT GTGTCTGCACGGGT -/GTGTCTGCACGGGT genomic deletion unknown 0 0 intron,near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,GTGTCTGCACGGGT, 204.000000,4804.000000, 0.040735,0.959265, 610 chr1 3386917 3386918 rs72852419 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 610 chr1 3387012 3387013 rs72852420 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 610 chr1 3387447 3387448 rs535412182 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 610 chr1 3387478 3387479 rs574901954 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, 610 chr1 3387647 3387661 rs552290392 0 + GGGTGTGTGTGCGT GGGTGTGTGTGCGT -/GGGTGTGTGTGCGT genomic deletion unknown 0 0 intron,near-gene-5 range 1 1 1000GENOMES, 2 -,GGGTGTGTGTGCGT, 53.000000,4955.000000, 0.010583,0.989417, 610 chr1 3387659 3387660 rs143715181 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 610 chr1 3387678 3387678 rs111916553 0 + - - -/C genomic insertion unknown 0 0 intron,near-gene-5 between 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 -,C, 4939.000000,69.000000, 0.986222,0.013778, 610 chr1 3387726 3387727 rs549828066 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 610 chr1 3387977 3387978 rs72633371 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4542.000000,466.000000, 0.906949,0.093051, maf-5-some-pop,maf-5-all-pops 610 chr1 3388195 3388196 rs182434428 0 + C C A/C genomic single unknown 0 0 intron,untranslated-5 exact 1 1 1000GENOMES, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, 610 chr1 3388268 3388269 rs77768688 0 + G G A/G genomic single unknown 0 0 coding-synon,intron exact 1 4 1000GENOMES,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, 610 chr1 3388405 3388406 rs72633372 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4477.000000,531.000000, 0.893970,0.106030, maf-5-some-pop,maf-5-all-pops 610 chr1 3388555 3388556 rs11580089 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4267.000000,741.000000, 0.852037,0.147963, maf-5-some-pop,maf-5-all-pops 610 chr1 3388621 3388622 rs541197594 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 610 chr1 3389004 3389005 rs35594591 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,ABI,BUSHMAN,LUNTER,SSMP,TISHKOFF, 2 -,C, 866.000000,4142.000000, 0.172923,0.827077, 610 chr1 3389005 3389005 rs536579895 0 + - - -/C genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,C, 4919.000000,89.000000, 0.982228,0.017772, 610 chr1 3389272 3389273 rs2298082 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3404.000000,1604.000000, 0.679712,0.320288, maf-5-some-pop,maf-5-all-pops 610 chr1 3389320 3389321 rs2487687 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 613.000000,4395.000000, 0.122404,0.877596, maf-5-some-pop,maf-5-all-pops 610 chr1 3389508 3389509 rs78430673 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 610 chr1 3389542 3389543 rs2245539 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,YUSUKE, 2 C,T, 470.000000,4538.000000, 0.093850,0.906150, maf-5-some-pop,maf-5-all-pops 610 chr1 3389884 3389885 rs2153709 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 610 chr1 3390007 3390008 rs60260959 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,HGSV,ILLUMINA,NHLBI-ESP,SEATTLESEQ, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 610 chr1 3390237 3390238 rs2493323 0 - T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 610 chr1 3390260 3390261 rs72852427 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop,maf-5-all-pops 610 chr1 3390332 3390333 rs11801612 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,TISHKOFF, 2 G,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 610 chr1 3390552 3390553 rs114678111 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 610 chr1 3390709 3390711 rs113787854 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,BUSHMAN, 2 -,AT, 77.000000,4931.000000, 0.015375,0.984625, 610 chr1 3390780 3390781 rs74520808 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 610 chr1 3390838 3390839 rs11581736 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,maf-5-all-pops 610 chr1 3390900 3390901 rs115295918 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, 610 chr1 3391248 3391249 rs59760512 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 610 chr1 3391250 3391251 rs59867555 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,HGSV,JMKIDD_LAB,NHLBI-ESP, 2 A,C, 245.000000,4763.000000, 0.048922,0.951078, 610 chr1 3391735 3391736 rs12756600 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, 610 chr1 3392155 3392156 rs113128791 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 4766.000000,242.000000, 0.951677,0.048323, 610 chr1 3392642 3392643 rs12073933 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP, 2 A,G, 4703.000000,305.000000, 0.939097,0.060903, maf-5-some-pop,maf-5-all-pops 610 chr1 3392730 3392731 rs114390535 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 610 chr1 3392866 3392867 rs74050523 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop,maf-5-all-pops 610 chr1 3393036 3393037 rs12124163 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1606.000000,3402.000000, 0.320687,0.679313, maf-5-some-pop,maf-5-all-pops 610 chr1 3393241 3393242 rs12561940 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,G, 4742.000000,266.000000, 0.946885,0.053115, maf-5-some-pop 610 chr1 3393660 3393661 rs183853787 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 610 chr1 3393734 3393735 rs112577856 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 610 chr1 3393975 3393976 rs114701286 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 610 chr1 3394016 3394017 rs77673387 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,maf-5-all-pops 610 chr1 3394097 3394098 rs74050524 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA-UK, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 610 chr1 3394102 3394103 rs74050525 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 610 chr1 3394120 3394121 rs56341824 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 4649.000000,359.000000, 0.928315,0.071685, maf-5-some-pop,maf-5-all-pops 610 chr1 3394249 3394250 rs10909948 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1583.000000,3425.000000, 0.316094,0.683906, maf-5-some-pop,maf-5-all-pops 610 chr1 3394278 3394279 rs4328022 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 4552.000000,456.000000, 0.908946,0.091054, maf-5-some-pop,maf-5-all-pops 610 chr1 3394440 3394441 rs17854723 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,CORNELL,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 C,T, 4662.000000,346.000000, 0.930911,0.069090, maf-5-some-pop 610 chr1 3394455 3394456 rs4638054 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 26 1000GENOMES,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop 610 chr1 3394639 3394640 rs4422946 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP, 2 A,G, 502.000000,4506.000000, 0.100240,0.899760, maf-5-some-pop,maf-5-all-pops 610 chr1 3394673 3394674 rs4534324 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, maf-5-some-pop 610 chr1 3394851 3394852 rs55824184 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop,maf-5-all-pops 610 chr1 3394870 3394871 rs74050528 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 610 chr1 3395038 3395039 rs10797395 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 29 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3436.000000,1572.000000, 0.686102,0.313898, maf-5-some-pop,maf-5-all-pops 610 chr1 3395173 3395174 rs61734742 0 + C C A/C genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,CANCER-GENOME,CLINSEQ_SNP,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,C, 457.000000,4551.000000, 0.091254,0.908746, maf-5-some-pop 610 chr1 3395228 3395229 rs4553117 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4875.000000,133.000000, 0.973442,0.026558, maf-5-some-pop 610 chr1 3395281 3395282 rs61056198 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 610 chr1 3395387 3395388 rs28568519 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4679.000000,329.000000, 0.934305,0.065695, maf-5-some-pop,maf-5-all-pops 610 chr1 3395531 3395540 rs150230489 0 + GAGAGCCCT GAGAGCCCT -/GAGAGCCCT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GAGAGCCCT, 256.000000,4752.000000, 0.051118,0.948882, 610 chr1 3395733 3395734 rs4078526 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop,maf-5-all-pops 610 chr1 3395754 3395755 rs72633378 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 443.000000,4565.000000, 0.088459,0.911542, maf-5-some-pop,maf-5-all-pops 610 chr1 3395801 3395802 rs116411040 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 610 chr1 3396095 3396096 rs149332312 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 610 chr1 3396278 3396278 rs200308477 0 + - - -/GCCCCG genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,WARNICH_LAB, 2 -,GCCCCG, 4905.000000,103.000000, 0.979433,0.020567, 610 chr1 3396736 3396737 rs11801054 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4568.000000,440.000000, 0.912141,0.087859, maf-5-some-pop,maf-5-all-pops 610 chr1 3396959 3396960 rs74050532 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,NHLBI-ESP,TISHKOFF, 2 G,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 610 chr1 3397061 3397062 rs56309807 0 + G G A/G genomic single unknown 0 0 missense exact 1 11 1000GENOMES,BCMHGSC_JDW,CLINSEQ_SNP,ENSEMBL,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,NHLBI-ESP,PJP,TISHKOFF, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 610 chr1 3397415 3397415 rs142007270 0 + - - -/CT genomic insertion unknown 0 0 untranslated-3 between 1 6 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER, 2 -,CT, 170.000000,4838.000000, 0.033946,0.966054, 610 chr1 3397454 3397455 rs1051515 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,LEE,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,maf-5-all-pops 610 chr1 3397563 3397564 rs1051517 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,LEE,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1597.000000,3411.000000, 0.318890,0.681110, maf-5-some-pop,maf-5-all-pops 610 chr1 3397616 3397617 rs74050534 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 610 chr1 3397669 3397670 rs139034353 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,SSMP, 2 C,G, 4904.000000,104.000000, 0.979233,0.020767, 610 chr1 3397755 3397756 rs150072021 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 610 chr1 3397835 3397836 rs55860810 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop,maf-5-all-pops 610 chr1 3397904 3397905 rs2487676 0 - G G C/G genomic single unknown 0 0 near-gene-3 exact 1 21 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 610 chr1 3397924 3397925 rs10797396 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3408.000000,1600.000000, 0.680511,0.319489, maf-5-some-pop,maf-5-all-pops 610 chr1 3398045 3398046 rs80257212 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 610 chr1 3398169 3398170 rs10909949 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop,maf-5-all-pops 610 chr1 3398330 3398331 rs11802503 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,CSHL-HAPMAP,TISHKOFF, 2 A,G, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,maf-5-all-pops 610 chr1 3398612 3398613 rs77034318 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop,maf-5-all-pops 610 chr1 3398879 3398879 rs138984372 0 + - - -/GGGGGGCGGGTAGCC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,GGGGGGCGGGTAGCC, 2101.000000,2907.000000, 0.419529,0.580471, 610 chr1 3398983 3398984 rs11579276 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 3936.000000,1072.000000, 0.785942,0.214058, maf-5-some-pop,maf-5-all-pops 610 chr1 3399589 3399590 rs12067229 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 4703.000000,305.000000, 0.939097,0.060903, maf-5-some-pop,maf-5-all-pops 610 chr1 3399950 3399951 rs74050535 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 610 chr1 3400074 3400075 rs114126932 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop,maf-5-all-pops 610 chr1 3400549 3400550 rs9943174 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,HGSV,PJP,WI_SSAHASNP, 2 C,T, 4711.000000,297.000000, 0.940695,0.059305, maf-5-some-pop,maf-5-all-pops 610 chr1 3400659 3400660 rs35002986 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, 610 chr1 3400707 3400707 rs140907303 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,LUNTER,TISHKOFF, 2 -,G, 4945.000000,63.000000, 0.987420,0.012580, 610 chr1 3400724 3400725 rs12124659 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1496.000000,3512.000000, 0.298722,0.701278, maf-5-some-pop,maf-5-all-pops 610 chr1 3400763 3400764 rs75106851 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop,maf-5-all-pops 610 chr1 3400920 3400921 rs375080962 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 610 chr1 3401178 3401179 rs114955696 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop,maf-5-all-pops 610 chr1 3401648 3401649 rs72852447 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop,maf-5-all-pops 610 chr1 3402006 3402007 rs77528507 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,T, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop,maf-5-all-pops 610 chr1 3402106 3402107 rs147938112 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 4928.000000,80.000000, 0.984026,0.015974, 610 chr1 3402221 3402222 rs56892109 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 610 chr1 3402232 3402233 rs4648504 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1489.000000,3519.000000, 0.297324,0.702676, 610 chr1 3403013 3403014 rs11579929 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,JMKIDD_LAB,TISHKOFF, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 610 chr1 3403297 3403303 rs141722954 0 + AAAAAT AAAAAT -/AAAAAT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER, 2 -,AAAAAT, 192.000000,4816.000000, 0.038339,0.961661, 610 chr1 3404227 3404228 rs116610939 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 610 chr1 3404358 3404359 rs60168454 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 902.000000,4106.000000, 0.180112,0.819888, maf-5-some-pop,maf-5-all-pops 610 chr1 3404709 3404710 rs4648389 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3965.000000,1043.000000, 0.791733,0.208267, maf-5-some-pop,maf-5-all-pops 610 chr1 3404732 3404733 rs140094957 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 610 chr1 3404817 3404818 rs115919274 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 610 chr1 3405136 3405137 rs61759244 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,G, 4882.000000,126.000000, 0.974840,0.025160, 610 chr1 3405295 3405296 rs4648505 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1733.000000,3275.000000, 0.346046,0.653954, maf-5-some-pop,maf-5-all-pops 610 chr1 3405779 3405780 rs115901190 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 4952.000000,56.000000, 0.988818,0.011182, 610 chr1 3405957 3405958 rs74050542 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop,maf-5-all-pops 610 chr1 3406196 3406197 rs76972514 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4561.000000,447.000000, 0.910743,0.089257, maf-5-some-pop 610 chr1 3406209 3406210 rs74050544 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 236.000000,4772.000000, 0.047125,0.952875, maf-5-some-pop,maf-5-all-pops 610 chr1 3406301 3406302 rs77543902 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop,maf-5-all-pops 610 chr1 3406371 3406372 rs77908812 0 + C C A/C genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 A,C, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 610 chr1 3406523 3406524 rs74636253 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,maf-5-all-pops 610 chr1 3406657 3406658 rs149151273 0 + A A -/A genomic deletion unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,A, 92.000000,4916.000000, 0.018371,0.981629, 610 chr1 3406811 3406812 rs144010626 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, 610 chr1 3406926 3406927 rs74050545 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop,maf-5-all-pops 610 chr1 3407042 3407043 rs2794321 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4547.000000,461.000000, 0.907947,0.092053, maf-5-some-pop,maf-5-all-pops 610 chr1 3407064 3407065 rs74050546 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 G,T, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,maf-5-all-pops 610 chr1 3407111 3407112 rs57484147 0 + C C C/T genomic single unknown 0 0 missense exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, 610 chr1 3407366 3407367 rs2487667 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop,maf-5-all-pops 610 chr1 3407544 3407545 rs75327990 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop,maf-5-all-pops 610 chr1 3407559 3407560 rs74050547 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,TISHKOFF, 2 C,T, 4758.000000,250.000000, 0.950080,0.049920, maf-5-some-pop,maf-5-all-pops 610 chr1 3407679 3407680 rs56356910 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 167.000000,4841.000000, 0.033347,0.966653, 610 chr1 3407718 3407719 rs7549092 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 675.000000,4333.000000, 0.134784,0.865216, maf-5-some-pop 610 chr1 3407744 3407745 rs116701568 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 611 chr1 3407874 3407875 rs7542144 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 611 chr1 3407958 3407959 rs114256420 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 611 chr1 3408182 3408183 rs77550815 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,T, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 611 chr1 3408318 3408319 rs78909915 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 336.000000,4672.000000, 0.067093,0.932907, maf-5-some-pop,maf-5-all-pops 611 chr1 3408333 3408334 rs115920918 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop,maf-5-all-pops 611 chr1 3408556 3408557 rs12068558 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 G,T, 3790.000000,1218.000000, 0.756789,0.243211, maf-5-some-pop,maf-5-all-pops 611 chr1 3408705 3408706 rs74820022 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB, 2 A,C, 150.000000,4858.000000, 0.029952,0.970048, maf-5-some-pop,maf-5-all-pops 611 chr1 3408725 3408726 rs12072653 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 4483.000000,525.000000, 0.895168,0.104832, maf-5-some-pop,maf-5-all-pops 611 chr1 3408797 3408798 rs111696316 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop,maf-5-all-pops 611 chr1 3409271 3409272 rs61746548 0 + C C C/T genomic single unknown 0 0 missense exact 1 8 1000GENOMES,CORNELL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 C,T, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,maf-5-all-pops 611 chr1 3409427 3409428 rs58847988 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 G,T, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop,maf-5-all-pops 611 chr1 3409698 3409699 rs140620764 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,G, 175.000000,4833.000000, 0.034944,0.965056, 611 chr1 3409701 3409702 rs74050549 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB, 2 G,T, 4850.000000,158.000000, 0.968450,0.031549, 611 chr1 3410062 3410063 rs146922056 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 611 chr1 3410220 3410221 rs7548716 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4659.000000,349.000000, 0.930312,0.069688, maf-5-some-pop 611 chr1 3410222 3410223 rs74050550 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop,maf-5-all-pops 611 chr1 3410409 3410410 rs61910697 0 + C C C/T genomic single unknown 0 0 intron,missense exact 1 11 1000GENOMES,CORNELL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop 611 chr1 3410580 3410581 rs61746168 0 + G G A/G genomic single unknown 0 0 intron,missense exact 1 13 1000GENOMES,APPLERA_GI,CORNELL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 810.000000,4198.000000, 0.161741,0.838259, maf-5-some-pop,maf-5-all-pops 611 chr1 3410643 3410644 rs61742508 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 15 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 4220.000000,788.000000, 0.842652,0.157348, maf-5-some-pop,maf-5-all-pops 611 chr1 3410858 3410859 rs76271892 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, maf-5-some-pop,maf-5-all-pops 611 chr1 3410972 3410973 rs12075570 0 + C C C/T genomic single unknown 0 0 missense exact 1 10 1000GENOMES,CORNELL,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP, 2 C,T, 4665.000000,343.000000, 0.931510,0.068490, maf-5-some-pop 611 chr1 3411037 3411038 rs61730954 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 10 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP, 2 A,G, 439.000000,4569.000000, 0.087660,0.912340, maf-5-some-pop 611 chr1 3411183 3411184 rs78747258 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP, 2 A,G, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop,maf-5-all-pops 611 chr1 3411366 3411367 rs7516439 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 796.000000,4212.000000, 0.158946,0.841054, maf-5-some-pop,maf-5-all-pops 611 chr1 3411395 3411396 rs77610498 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop,maf-5-all-pops 611 chr1 3411572 3411573 rs75961698 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4849.000000,159.000000, 0.968251,0.031749, 611 chr1 3411773 3411774 rs74050554 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,ILLUMINA-UK, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 611 chr1 3412252 3412253 rs74050555 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 611 chr1 3412253 3412254 rs56175625 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 611 chr1 3412417 3412418 rs41315290 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 479.000000,4529.000000, 0.095647,0.904353, maf-5-some-pop 611 chr1 3412464 3412465 rs57804877 0 + C C C/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,COMPLETE_GENOMICS,CORNELL,EXOME_CHIP,HGSV,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 611 chr1 3412520 3412521 rs61744111 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,CORNELL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 611 chr1 3412643 3412644 rs41315292 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,G, 397.000000,4611.000000, 0.079273,0.920727, maf-5-some-pop 611 chr1 3412725 3412726 rs72633383 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4466.000000,542.000000, 0.891773,0.108227, maf-5-some-pop 611 chr1 3412812 3412813 rs60568081 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,HGSV, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, 611 chr1 3412907 3412908 rs74050556 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 642.000000,4366.000000, 0.128195,0.871805, maf-5-some-pop,maf-5-all-pops 611 chr1 3412992 3412993 rs74050557 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 532.000000,4476.000000, 0.106230,0.893770, maf-5-some-pop 611 chr1 3413167 3413168 rs149711898 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 611 chr1 3413425 3413426 rs12405358 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,G, 3536.000000,1472.000000, 0.706070,0.293930, maf-5-some-pop,maf-5-all-pops 611 chr1 3413433 3413434 rs114125638 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 611 chr1 3413453 3413454 rs34478145 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,ABI,LUNTER, 2 -,C, 155.000000,4853.000000, 0.030950,0.969050, 611 chr1 3413503 3413504 rs112892496 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 611 chr1 3413513 3413514 rs61759245 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,G, 4618.000000,390.000000, 0.922125,0.077875, maf-5-some-pop,maf-5-all-pops 611 chr1 3413699 3413700 rs149022131 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,T, 4947.000000,61.000000, 0.987819,0.012180, 611 chr1 3413749 3413750 rs574463624 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 611 chr1 3413867 3413868 rs4648506 0 + C C C/G genomic single unknown 0 0 missense exact 1 18 1000GENOMES,ABI,BL,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3786.000000,1222.000000, 0.755990,0.244010, maf-5-some-pop,maf-5-all-pops 611 chr1 3414104 3414105 rs10909951 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3334.000000,1674.000000, 0.665735,0.334265, maf-5-some-pop,maf-5-all-pops 611 chr1 3414233 3414234 rs78738321 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 611 chr1 3414287 3414288 rs114953925 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 611 chr1 3414458 3414459 rs142899582 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 611 chr1 3414664 3414665 rs7547290 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,TISHKOFF,WI_SSAHASNP, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 611 chr1 3415861 3415862 rs147831722 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,NHLBI-ESP, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 611 chr1 3416387 3416388 rs61998191 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 4 1000GENOMES,CORNELL,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 611 chr1 3416448 3416449 rs7553399 0 + C C A/C genomic single unknown 0 0 missense exact 1 24 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2846.000000,2162.000000, 0.568291,0.431709, maf-5-some-pop,maf-5-all-pops 611 chr1 3416465 3416466 rs61747874 0 + C C C/T genomic single unknown 0.025312 0.109615 coding-synon exact 1 1 CORNELL, 2 C,T, 77.000000,1.000000, 0.987179,0.012820, 611 chr1 3416653 3416654 rs145450724 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 611 chr1 3416679 3416680 rs149013695 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, 611 chr1 3417051 3417052 rs116097279 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 611 chr1 3417096 3417097 rs116219328 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 611 chr1 3417210 3417211 rs61742846 0 + G G A/G genomic single unknown 0 0 missense exact 1 10 1000GENOMES,CORNELL,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop 611 chr1 3417671 3417672 rs114976020 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 611 chr1 3417959 3417960 rs4648507 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2862.000000,2146.000000, 0.571486,0.428514, maf-5-some-pop,maf-5-all-pops 611 chr1 3418170 3418171 rs7516662 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 285.000000,4723.000000, 0.056909,0.943091, maf-5-some-pop 611 chr1 3418390 3418391 rs4648508 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 14 1000GENOMES,BL,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3575.000000,1433.000000, 0.713858,0.286142, maf-5-some-pop,maf-5-all-pops 611 chr1 3418461 3418462 rs79376840 0 + C C C/T genomic single unknown 0 0 missense exact 1 5 1000GENOMES,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop,maf-5-all-pops 611 chr1 3418614 3418615 rs11582819 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV, 2 C,G, 2082.000000,2926.000000, 0.415735,0.584265, 611 chr1 3418793 3418794 rs2821026 0 - G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_JCM,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3418977 3418979 rs201491371 0 + TC TC -/TC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,TC, 159.000000,4849.000000, 0.031749,0.968251, 611 chr1 3419421 3419422 rs72852480 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop,maf-5-all-pops 611 chr1 3419940 3419942 rs144936390 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF,WARNICH_LAB, 2 -,AG, 769.000000,4239.000000, 0.153554,0.846446, 611 chr1 3420670 3420671 rs575428125 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 611 chr1 3420747 3420748 rs72852481 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, 611 chr1 3420816 3420817 rs116728185 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, 611 chr1 3421130 3421131 rs79554464 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop,maf-5-all-pops 611 chr1 3421134 3421135 rs79669513 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop,maf-5-all-pops 611 chr1 3421238 3421239 rs115021585 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, 611 chr1 3421243 3421244 rs12132523 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,SC_SNP, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 611 chr1 3421328 3421329 rs76199536 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop,maf-5-all-pops 611 chr1 3421362 3421363 rs2487686 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1174.000000,3834.000000, 0.234425,0.765575, maf-5-some-pop,maf-5-all-pops 611 chr1 3421540 3421541 rs2794357 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,WI_SSAHASNP, 2 C,G, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop,maf-5-all-pops 611 chr1 3421543 3421544 rs114435999 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 611 chr1 3421585 3421586 rs6669870 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3394.000000,1614.000000, 0.677716,0.322284, maf-5-some-pop,maf-5-all-pops 611 chr1 3421600 3421617 rs146805896 0 + CAAGGCAACACCGGTAG CAAGGCAACACCGGTAG -/CAAGGCAACACCGGTAG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,CAAGGCAACACCGGTAG, 847.000000,4161.000000, 0.169129,0.830871, 611 chr1 3421625 3421642 rs148387225 0 + CACCGGTAGCAAGGCAC CACCGGTAGCAAGGCAC -/CACCGGTAGCAAGGCAC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CACCGGTAGCAAGGCAC, 378.000000,4630.000000, 0.075479,0.924521, 611 chr1 3421641 3421642 rs4648512 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 395.000000,4613.000000, 0.078874,0.921126, 611 chr1 3421657 3421658 rs2821009 0 - A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3421958 3421959 rs200837804 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,CLINSEQ_SNP,NHLBI-ESP, 2 C,G, 921.000000,4087.000000, 0.183906,0.816094, 611 chr1 3422112 3422113 rs116651284 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 611 chr1 3422143 3422144 rs2105305 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 750.000000,4258.000000, 0.149760,0.850240, maf-5-some-pop,maf-5-all-pops 611 chr1 3422482 3422483 rs77311226 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, 611 chr1 3422541 3422542 rs72852488 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 611 chr1 3422596 3422597 rs72852490 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 4697.000000,311.000000, 0.937899,0.062101, maf-5-some-pop,maf-5-all-pops 611 chr1 3422641 3422642 rs2247236 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4254.000000,754.000000, 0.849441,0.150559, maf-5-some-pop 611 chr1 3422987 3422988 rs877510 0 - G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3423101 3423102 rs75829619 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop,maf-5-all-pops 611 chr1 3423393 3423394 rs79346380 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop,maf-5-all-pops 611 chr1 3423662 3423663 rs72852494 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop,maf-5-all-pops 611 chr1 3423741 3423742 rs10797397 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1285.000000,3723.000000, 0.256589,0.743411, maf-5-some-pop,maf-5-all-pops 611 chr1 3423765 3423766 rs10909956 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 792.000000,4216.000000, 0.158147,0.841853, maf-5-some-pop,maf-5-all-pops 611 chr1 3423805 3423806 rs12078947 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,SC_SNP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 611 chr1 3423912 3423913 rs79583681 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4536.000000,472.000000, 0.905751,0.094249, maf-5-some-pop,maf-5-all-pops 611 chr1 3424197 3424198 rs78509910 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop,maf-5-all-pops 611 chr1 3424378 3424379 rs61730931 0 + C C C/T genomic single by-cluster 0.028163 0.115276 missense exact 1 3 CORNELL,EXOME_CHIP,NHLBI-ESP, 2 C,T, 69.000000,1.000000, 0.985714,0.014286, 611 chr1 3424387 3424388 rs947345 0 + G G A/G genomic single unknown 0 0 missense exact 1 15 1000GENOMES,BCMHGSC_JDW,CLINSEQ_SNP,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop,maf-5-all-pops 611 chr1 3424507 3424508 rs41315296 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop,maf-5-all-pops 611 chr1 3424647 3424648 rs77454573 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 611 chr1 3424739 3424740 rs116739097 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, 611 chr1 3424832 3424833 rs79547674 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop,maf-5-all-pops 611 chr1 3425182 3425183 rs61735125 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 11 1000GENOMES,BUSHMAN,CLINSEQ_SNP,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop,maf-5-all-pops 611 chr1 3425334 3425335 rs116337101 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 611 chr1 3425429 3425430 rs2794358 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2525.000000,2483.000000, 0.504193,0.495807, maf-5-some-pop,maf-5-all-pops 611 chr1 3425866 3425867 rs2794359 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,C, 440.000000,4568.000000, 0.087859,0.912141, 611 chr1 3426093 3426094 rs114672285 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop,maf-5-all-pops 611 chr1 3427003 3427004 rs114882676 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 611 chr1 3427066 3427067 rs113535478 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 A,G, 4135.000000,873.000000, 0.825679,0.174321, 611 chr1 3427187 3427188 rs116650518 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,maf-5-all-pops 611 chr1 3427297 3427298 rs79653272 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop,maf-5-all-pops 611 chr1 3427350 3427351 rs2821000 0 - A A A/C/G/T genomic single unknown 0 0 coding-synon,nonsense,missense exact 1 SingleClassQuadAllelic 11 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SEATTLESEQ,SSMP, 4 A,C,G,T, 4617.000000,391.000000,391.000000,4617.000000, 0.460962,0.039038,0.039038,0.460962, maf-5-some-pop,maf-5-all-pops 611 chr1 3427484 3427485 rs2794360 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SC_JCM,SSMP, 2 A,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop,maf-5-all-pops 611 chr1 3427514 3427528 rs146093263 0 + CACACGCCCCCACC CACACGCCCCCACC -/CACACGCCCCCACC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,CACACGCCCCCACC, 294.000000,4714.000000, 0.058706,0.941294, 611 chr1 3427561 3427562 rs114650222 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop,maf-5-all-pops 611 chr1 3427908 3427909 rs72853525 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4635.000000,373.000000, 0.925519,0.074481, maf-5-some-pop,maf-5-all-pops 611 chr1 3428272 3428273 rs114176340 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop,maf-5-all-pops 611 chr1 3428423 3428424 rs4648391 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3271.000000,1737.000000, 0.653155,0.346845, maf-5-some-pop,maf-5-all-pops 611 chr1 3428427 3428428 rs4648514 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3271.000000,1737.000000, 0.653155,0.346845, maf-5-some-pop,maf-5-all-pops 611 chr1 3428805 3428806 rs11808983 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4735.000000,273.000000, 0.945487,0.054513, maf-5-some-pop,maf-5-all-pops 611 chr1 3429550 3429551 rs143569562 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, 611 chr1 3429694 3429695 rs11587354 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1350.000000,3658.000000, 0.269569,0.730431, maf-5-some-pop,maf-5-all-pops 611 chr1 3429769 3429769 rs373887857 0 + - - -/TTTA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,TTTA, 4887.000000,121.000000, 0.975839,0.024161, 611 chr1 3430645 3430646 rs72853528 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 3772.000000,1236.000000, 0.753195,0.246805, 611 chr1 3430811 3430812 rs34128030 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,ABI,BL,GMI,HGSV,SSMP, 2 -,A, 1808.000000,3200.000000, 0.361022,0.638978, 611 chr1 3431190 3431191 rs61746170 0 + C C C/T genomic single by-cluster 0.026662 0.112339 missense exact 1 3 CORNELL,EXOME_CHIP,NHLBI-ESP, 2 C,T, 73.000000,1.000000, 0.986486,0.013513, 611 chr1 3431234 3431235 rs7543634 0 + A A A/C genomic single unknown 0 0 coding-synon exact 1 11 1000GENOMES,COMPLETE_GENOMICS,CORNELL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,TISHKOFF,WI_SSAHASNP, 2 A,C, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop 611 chr1 3431440 3431441 rs947348 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 386.000000,4622.000000, 0.077077,0.922923, maf-5-some-pop,maf-5-all-pops 611 chr1 3431528 3431529 rs947349 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4091.000000,917.000000, 0.816893,0.183107, maf-5-some-pop,maf-5-all-pops 611 chr1 3431554 3431555 rs947350 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop,maf-5-all-pops 611 chr1 3432277 3432278 rs12045137 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3551.000000,1457.000000, 0.709065,0.290935, maf-5-some-pop,maf-5-all-pops 611 chr1 3432821 3432822 rs147890637 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 611 chr1 3432992 3432993 rs11587498 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 906.000000,4102.000000, 0.180911,0.819089, maf-5-some-pop,maf-5-all-pops 611 chr1 3433006 3433007 rs60940180 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop,maf-5-all-pops 611 chr1 3434122 3434123 rs2794361 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,T, 490.000000,4518.000000, 0.097843,0.902156, maf-5-some-pop,maf-5-all-pops 611 chr1 3434531 3434532 rs880037 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 250.000000,4758.000000, 0.049920,0.950080, maf-5-some-pop 611 chr1 3434672 3434673 rs72853535 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,T, 4947.000000,61.000000, 0.987819,0.012180, 611 chr1 3434704 3434705 rs11807383 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,TISHKOFF, 2 A,G, 167.000000,4841.000000, 0.033347,0.966653, maf-5-some-pop,maf-5-all-pops 611 chr1 3434983 3434984 rs2794362 0 + G G C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3764.000000,1244.000000, 0.751597,0.248403, maf-5-some-pop,maf-5-all-pops 611 chr1 3435382 3435383 rs79899647 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop,maf-5-all-pops 611 chr1 3435518 3435519 rs114006401 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,maf-5-all-pops 611 chr1 3436383 3436384 rs116419988 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 611 chr1 3436640 3436641 rs12409234 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3830.000000,1178.000000, 0.764776,0.235224, maf-5-some-pop,maf-5-all-pops 611 chr1 3436879 3436880 rs2794363 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 497.000000,4511.000000, 0.099241,0.900759, maf-5-some-pop,maf-5-all-pops 611 chr1 3437013 3437014 rs2794364 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP, 2 A,G, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop,maf-5-all-pops 611 chr1 3437149 3437150 rs113340025 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 611 chr1 3437464 3437465 rs76447852 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 176.000000,4832.000000, 0.035144,0.964856, 611 chr1 3437934 3437935 rs2794365 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2720.000000,2288.000000, 0.543131,0.456869, maf-5-some-pop,maf-5-all-pops 611 chr1 3438178 3438179 rs2794366 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4246.000000,762.000000, 0.847843,0.152157, maf-5-some-pop,maf-5-all-pops 611 chr1 3438192 3438193 rs11587384 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop,maf-5-all-pops 611 chr1 3438353 3438354 rs2821070 0 - G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3438430 3438431 rs72853537 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 302.000000,4706.000000, 0.060304,0.939696, maf-5-some-pop,maf-5-all-pops 611 chr1 3438504 3438505 rs78046265 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 611 chr1 3438669 3438670 rs10909958 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4597.000000,411.000000, 0.917931,0.082069, maf-5-some-pop,maf-5-all-pops 611 chr1 3438872 3438873 rs72633389 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 611 chr1 3438897 3438898 rs11809221 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,TISHKOFF, 2 A,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop,maf-5-all-pops 611 chr1 3439068 3439069 rs74600683 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop,maf-5-all-pops 611 chr1 3439069 3439070 rs10442594 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1218.000000,3790.000000, 0.243211,0.756789, maf-5-some-pop,maf-5-all-pops 611 chr1 3439189 3439190 rs35365887 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1202.000000,3806.000000, 0.240016,0.759984, maf-5-some-pop,maf-5-all-pops 611 chr1 3439256 3439257 rs76319981 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4551.000000,457.000000, 0.908746,0.091254, maf-5-some-pop,maf-5-all-pops 611 chr1 3439487 3439488 rs116936357 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 276.000000,4732.000000, 0.055112,0.944888, maf-5-some-pop,maf-5-all-pops 611 chr1 3439572 3439573 rs78293800 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,C, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop,maf-5-all-pops 611 chr1 3439592 3439593 rs72853538 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, 611 chr1 3439640 3439640 rs200503308 0 + - - -/C genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,C, 4915.000000,93.000000, 0.981430,0.018570, 611 chr1 3439898 3439899 rs113955987 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 G,T, 297.000000,4711.000000, 0.059305,0.940695, maf-5-some-pop,maf-5-all-pops 611 chr1 3439952 3439953 rs72853539 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 138.000000,4870.000000, 0.027556,0.972444, maf-5-some-pop,maf-5-all-pops 611 chr1 3440028 3440029 rs191704897 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 4733.000000,275.000000, 0.945088,0.054912, 611 chr1 3440113 3440114 rs71634337 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,SSMP, 2 C,T, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop,maf-5-all-pops 611 chr1 3440238 3440239 rs374150109 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 4954.000000,54.000000, 0.989217,0.010783, 611 chr1 3440444 3440445 rs1891142 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 482.000000,4526.000000, 0.096246,0.903754, maf-5-some-pop,maf-5-all-pops 611 chr1 3440646 3440647 rs2794322 0 + T T C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4697.000000,311.000000, 0.937899,0.062101, maf-5-some-pop 611 chr1 3440823 3440824 rs10797399 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1104.000000,3904.000000, 0.220447,0.779553, maf-5-some-pop,maf-5-all-pops 611 chr1 3440918 3440919 rs75891780 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop 611 chr1 3440942 3440943 rs12049449 0 + A A A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3492.000000,1516.000000, 0.697284,0.302716, maf-5-some-pop,maf-5-all-pops 611 chr1 3441146 3441147 rs58770980 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 G,T, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop,maf-5-all-pops 611 chr1 3441263 3441264 rs12093117 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop 611 chr1 3441307 3441308 rs56701664 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,C, 299.000000,4709.000000, 0.059705,0.940296, maf-5-some-pop,maf-5-all-pops 611 chr1 3441701 3441702 rs115852179 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop 611 chr1 3441763 3441764 rs12097309 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1112.000000,3896.000000, 0.222045,0.777955, maf-5-some-pop,maf-5-all-pops 611 chr1 3441952 3441953 rs72853545 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,C, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop,maf-5-all-pops 611 chr1 3442421 3442422 rs12094565 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop,maf-5-all-pops 611 chr1 3442754 3442755 rs11589895 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 881.000000,4127.000000, 0.175919,0.824081, maf-5-some-pop,maf-5-all-pops 611 chr1 3443101 3443102 rs2995004 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 4513.000000,495.000000, 0.901158,0.098842, 611 chr1 3443192 3443193 rs111335026 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4056.000000,952.000000, 0.809904,0.190096, 611 chr1 3443287 3443288 rs114476348 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop 611 chr1 3443296 3443297 rs79481964 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop,maf-5-all-pops 611 chr1 3443407 3443408 rs67181577 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,G, 4920.000000,88.000000, 0.982428,0.017572, 611 chr1 3443940 3443941 rs72853548 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 611 chr1 3444031 3444032 rs34724272 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1150.000000,3858.000000, 0.229633,0.770367, maf-5-some-pop,maf-5-all-pops 611 chr1 3445285 3445286 rs2096100 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop,maf-5-all-pops 611 chr1 3445352 3445353 rs2821068 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3445536 3445540 rs113033289 0 + ACAG ACAG -/ACAG genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP, 2 -,ACAG, 911.000000,4097.000000, 0.181909,0.818091, 611 chr1 3446010 3446011 rs79382430 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, maf-5-some-pop,maf-5-all-pops 611 chr1 3446204 3446205 rs34915232 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 4405.000000,603.000000, 0.879593,0.120407, maf-5-some-pop,maf-5-all-pops 611 chr1 3446249 3446250 rs2794319 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 495.000000,4513.000000, 0.098842,0.901158, maf-5-some-pop,maf-5-all-pops 611 chr1 3446295 3446296 rs35026651 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1135.000000,3873.000000, 0.226637,0.773363, maf-5-some-pop,maf-5-all-pops 611 chr1 3446296 3446297 rs117361977 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop,maf-5-all-pops 611 chr1 3446310 3446311 rs11589175 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop,maf-5-all-pops 611 chr1 3446510 3446511 rs4648520 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 C,T, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop,maf-5-all-pops 611 chr1 3446812 3446813 rs4648392 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop 611 chr1 3446994 3446995 rs11811714 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3605.000000,1403.000000, 0.719848,0.280152, maf-5-some-pop,maf-5-all-pops 611 chr1 3447116 3447117 rs56103034 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 892.000000,4116.000000, 0.178115,0.821885, maf-5-some-pop,maf-5-all-pops 611 chr1 3447164 3447165 rs79435356 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop,maf-5-all-pops 611 chr1 3447275 3447276 rs4648393 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop,maf-5-all-pops 611 chr1 3447277 3447278 rs75413213 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 495.000000,4513.000000, 0.098842,0.901158, maf-5-some-pop,maf-5-all-pops 611 chr1 3447796 3447797 rs4648521 0 + G G A/G genomic single unknown 0 0 intron,missense exact 1 4 1000GENOMES,EVA-GONL,SSMP,WI_SSAHASNP, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop,maf-5-all-pops 611 chr1 3447898 3447899 rs3927734 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 4 1000GENOMES,EVA-GONL,SSMP,TSC-CSHL, 2 C,T, 4514.000000,494.000000, 0.901358,0.098642, 611 chr1 3447913 3447914 rs3927735 0 + G G C/G genomic single unknown 0 0 intron,untranslated-5 exact 1 6 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,SSMP,TSC-CSHL, 2 C,G, 1805.000000,3203.000000, 0.360423,0.639577, maf-5-some-pop,maf-5-all-pops 611 chr1 3448359 3448360 rs28447582 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,SSAHASNP,SSMP, 2 A,G, 2169.000000,2839.000000, 0.433107,0.566893, maf-5-some-pop,maf-5-all-pops 611 chr1 3448412 3448413 rs4648522 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,SSMP,WI_SSAHASNP, 2 A,G, 2192.000000,2816.000000, 0.437700,0.562300, maf-5-some-pop,maf-5-all-pops 611 chr1 3448488 3448489 rs112286438 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4693.000000,315.000000, 0.937101,0.062899, 611 chr1 3448591 3448592 rs11799734 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,CSHL-HAPMAP, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 611 chr1 3448808 3448809 rs61762171 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 611 chr1 3448866 3448867 rs55762450 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 922.000000,4086.000000, 0.184105,0.815895, maf-5-some-pop,maf-5-all-pops 611 chr1 3448948 3448949 rs114813163 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 611 chr1 3449077 3449078 rs2487671 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 655.000000,4353.000000, 0.130791,0.869209, maf-5-some-pop,maf-5-all-pops 611 chr1 3449401 3449402 rs145868414 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 611 chr1 3449708 3449709 rs4648523 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 427.000000,4581.000000, 0.085264,0.914736, maf-5-some-pop 611 chr1 3449941 3449942 rs12741675 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3739.000000,1269.000000, 0.746605,0.253395, maf-5-some-pop,maf-5-all-pops 611 chr1 3450096 3450097 rs2487672 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4339.000000,669.000000, 0.866414,0.133586, maf-5-some-pop,maf-5-all-pops 611 chr1 3450273 3450274 rs115731794 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop 611 chr1 3450285 3450286 rs78384808 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop 611 chr1 3450482 3450483 rs76855999 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 611 chr1 3450531 3450532 rs111408401 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 611 chr1 3450593 3450594 rs74875915 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop,maf-5-all-pops 611 chr1 3450636 3450637 rs10797400 0 + C C A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1084.000000,3924.000000, 0.216454,0.783546, maf-5-some-pop,maf-5-all-pops 611 chr1 3450984 3450985 rs2794323 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP, 2 C,T, 497.000000,4511.000000, 0.099241,0.900759, maf-5-some-pop,maf-5-all-pops 611 chr1 3451004 3451005 rs12119711 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3664.000000,1344.000000, 0.731629,0.268371, maf-5-some-pop,maf-5-all-pops 611 chr1 3451038 3451039 rs10909959 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 986.000000,4022.000000, 0.196885,0.803115, maf-5-some-pop,maf-5-all-pops 611 chr1 3451077 3451078 rs116639953 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 611 chr1 3451187 3451188 rs74050570 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 611 chr1 3451537 3451538 rs6669754 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3689.000000,1319.000000, 0.736621,0.263379, maf-5-some-pop,maf-5-all-pops 611 chr1 3452801 3452802 rs111727261 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop,maf-5-all-pops 611 chr1 3452902 3452903 rs74050571 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,G, 123.000000,4885.000000, 0.024561,0.975439, 611 chr1 3453045 3453046 rs2821067 0 - C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3453060 3453061 rs77860206 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 611 chr1 3453308 3453309 rs2794325 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4509.000000,499.000000, 0.900359,0.099641, maf-5-some-pop,maf-5-all-pops 611 chr1 3453359 3453360 rs75784454 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop,maf-5-all-pops 611 chr1 3453591 3453592 rs77443849 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4485.000000,523.000000, 0.895567,0.104433, maf-5-some-pop 611 chr1 3453647 3453648 rs77241759 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 611 chr1 3453806 3453807 rs66681094 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 747.000000,4261.000000, 0.149161,0.850839, maf-5-some-pop,maf-5-all-pops 611 chr1 3453946 3453947 rs12727047 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop 611 chr1 3454301 3454302 rs74649444 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4526.000000,482.000000, 0.903754,0.096246, maf-5-some-pop,maf-5-all-pops 611 chr1 3454375 3454376 rs16823839 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop 611 chr1 3454591 3454592 rs9970944 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 3620.000000,1388.000000, 0.722843,0.277157, maf-5-some-pop,maf-5-all-pops 611 chr1 3454741 3454742 rs59777027 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 611 chr1 3454885 3454886 rs112391488 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 933.000000,4075.000000, 0.186302,0.813698, 611 chr1 3454892 3454893 rs116618871 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 611 chr1 3455241 3455242 rs12049456 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1380.000000,3628.000000, 0.275559,0.724441, maf-5-some-pop,maf-5-all-pops 611 chr1 3455328 3455329 rs116325844 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,maf-5-all-pops 611 chr1 3456295 3456296 rs16823032 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop 611 chr1 3456482 3456483 rs1891144 0 - G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3456591 3456592 rs4648524 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1050.000000,3958.000000, 0.209665,0.790335, maf-5-some-pop,maf-5-all-pops 611 chr1 3456870 3456871 rs10737192 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 944.000000,4064.000000, 0.188498,0.811502, maf-5-some-pop,maf-5-all-pops 611 chr1 3456912 3456913 rs75132942 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop,maf-5-all-pops 611 chr1 3457310 3457311 rs12562983 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4752.000000,256.000000, 0.948882,0.051118, maf-5-some-pop 611 chr1 3457418 3457419 rs34673906 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, 611 chr1 3457475 3457476 rs116407923 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 87.000000,4921.000000, 0.017372,0.982628, 611 chr1 3457896 3457897 rs77282509 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4523.000000,485.000000, 0.903155,0.096845, maf-5-some-pop,maf-5-all-pops 611 chr1 3457953 3457954 rs371049445 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 611 chr1 3458124 3458125 rs11579487 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop,maf-5-all-pops 611 chr1 3458680 3458681 rs2794331 0 - G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3459131 3459132 rs12065874 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3772.000000,1236.000000, 0.753195,0.246805, maf-5-some-pop,maf-5-all-pops 611 chr1 3459143 3459144 rs4333795 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SC_JCM,SSMP, 2 A,G, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop,maf-5-all-pops 611 chr1 3459196 3459197 rs75201405 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop 611 chr1 3459642 3459643 rs78031257 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop 611 chr1 3459714 3459715 rs115101958 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 611 chr1 3459866 3459867 rs61762173 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4246.000000,762.000000, 0.847843,0.152157, maf-5-some-pop,maf-5-all-pops 611 chr1 3460042 3460043 rs116160116 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,maf-5-all-pops 611 chr1 3460211 3460212 rs112381444 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 G,T, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop,maf-5-all-pops 611 chr1 3460460 3460461 rs59176181 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4448.000000,560.000000, 0.888179,0.111821, maf-5-some-pop,maf-5-all-pops 611 chr1 3460678 3460679 rs72470155 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 G,T, 71.000000,4937.000000, 0.014177,0.985823, 611 chr1 3460729 3460730 rs113595493 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4288.000000,720.000000, 0.856230,0.143770, maf-5-some-pop 611 chr1 3460798 3460799 rs115013656 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 611 chr1 3460843 3460844 rs115145740 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,EVA-GONL,ILLUMINA, 2 A,G, 4734.000000,274.000000, 0.945288,0.054713, 611 chr1 3460932 3460932 rs141579753 0 + - - -/A genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,A, 4850.000000,158.000000, 0.968450,0.031549, 611 chr1 3460989 3460990 rs567898415 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 265.000000,4743.000000, 0.052915,0.947085, 611 chr1 3460998 3460999 rs57427598 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 -,G, 673.000000,4335.000000, 0.134385,0.865615, 611 chr1 3461204 3461204 rs36030995 0 + - - -/C genomic insertion unknown 0 0 intron between 1 10 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 2452.000000,2556.000000, 0.489617,0.510383, 611 chr1 3461258 3461259 rs74050573 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 611 chr1 3461346 3461347 rs10909962 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop,maf-5-all-pops 611 chr1 3461664 3461665 rs57395109 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3228.000000,1780.000000, 0.644569,0.355431, maf-5-some-pop,maf-5-all-pops 611 chr1 3461886 3461887 rs66567626 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4518.000000,490.000000, 0.902156,0.097843, maf-5-some-pop,maf-5-all-pops 611 chr1 3461966 3461967 rs61762176 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1751.000000,3257.000000, 0.349641,0.650359, maf-5-some-pop,maf-5-all-pops 611 chr1 3462119 3462143 rs147021418 0 + CCCTCCTCATCACGGGTCTGGGAG CCCTCCTCATCACGGGTCTGGGAG -/CCCTCCTCATCACGGGTCTGGGAG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CCCTCCTCATCACGGGTCTGGGAG, 57.000000,4951.000000, 0.011382,0.988618, 611 chr1 3462330 3462331 rs78193450 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4575.000000,433.000000, 0.913538,0.086462, maf-5-some-pop,maf-5-all-pops 611 chr1 3462751 3462752 rs114223897 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 611 chr1 3462774 3462775 rs78007021 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 611 chr1 3462903 3462904 rs10797401 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops 611 chr1 3463032 3463033 rs61548507 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 470.000000,4538.000000, 0.093850,0.906150, maf-5-some-pop,maf-5-all-pops 611 chr1 3463227 3463228 rs28479691 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSAHASNP,SSMP, 2 A,G, 679.000000,4329.000000, 0.135583,0.864417, 611 chr1 3463234 3463235 rs376875953 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, 611 chr1 3463322 3463323 rs533257274 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4955.000000,53.000000, 0.989417,0.010583, 611 chr1 3463348 3463349 rs13374309 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP,WUGSC_SSAHASNP, 2 C,G, 3422.000000,1586.000000, 0.683307,0.316693, maf-5-some-pop,maf-5-all-pops 611 chr1 3463407 3463407 rs371259878 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,SSIP, 2 -,T, 4910.000000,98.000000, 0.980431,0.019569, 611 chr1 3463461 3463462 rs566395941 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 97.000000,4911.000000, 0.019369,0.980631, 611 chr1 3463479 3463480 rs139084864 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 611 chr1 3463496 3463497 rs571214361 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, 611 chr1 3463542 3463546 rs562027890 0 + GGGC GGGC -/GGGC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GGGC, 55.000000,4953.000000, 0.010982,0.989018, 611 chr1 3463546 3463547 rs573900935 0 + T T A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 55.000000,4953.000000, 0.010982,0.989018, 611 chr1 3463691 3463692 rs74794208 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, 611 chr1 3463723 3463724 rs74362571 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 611 chr1 3463802 3463803 rs34748054 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop,maf-5-all-pops 611 chr1 3463991 3463992 rs184845816 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, 611 chr1 3464350 3464350 rs565759021 0 + - - -/C genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,SSIP, 2 -,C, 4917.000000,91.000000, 0.981829,0.018171, 611 chr1 3464450 3464451 rs6685801 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1550.000000,3458.000000, 0.309505,0.690495, maf-5-some-pop 611 chr1 3464892 3464893 rs72853558 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop 611 chr1 3465079 3465080 rs74050576 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 60.000000,4948.000000, 0.011981,0.988019, 611 chr1 3465193 3465194 rs13374124 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 611 chr1 3465372 3465373 rs7340017 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3997.000000,1011.000000, 0.798123,0.201877, maf-5-some-pop,maf-5-all-pops 611 chr1 3465675 3465675 rs145857827 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,T, 4936.000000,72.000000, 0.985623,0.014377, 611 chr1 3465695 3465696 rs7539836 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3491.000000,1517.000000, 0.697085,0.302915, maf-5-some-pop,maf-5-all-pops 611 chr1 3465818 3465819 rs114683813 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 611 chr1 3465947 3465948 rs116825811 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 611 chr1 3466090 3466091 rs75311167 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 611 chr1 3466409 3466410 rs186299954 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 124.000000,4884.000000, 0.024760,0.975240, 611 chr1 3466548 3466549 rs76655078 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,C, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 611 chr1 3466557 3466558 rs180747064 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 611 chr1 3466852 3466853 rs116512791 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, 611 chr1 3466853 3466854 rs6675513 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop 611 chr1 3466894 3466895 rs72853563 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, 611 chr1 3467001 3467002 rs58554322 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 332.000000,4676.000000, 0.066294,0.933706, maf-5-some-pop,maf-5-all-pops 611 chr1 3467071 3467071 rs35289361 0 + - - -/G genomic insertion unknown 0 0 intron between 1 10 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 3617.000000,1391.000000, 0.722244,0.277756, 611 chr1 3467083 3467084 rs6693174 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop 611 chr1 3467464 3467465 rs72853566 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, 611 chr1 3467517 3467518 rs116070433 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 611 chr1 3467567 3467568 rs114802872 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 611 chr1 3467652 3467653 rs115743020 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 611 chr1 3467751 3467752 rs114034200 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 611 chr1 3468134 3468135 rs367642882 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4919.000000,89.000000, 0.982228,0.017772, 611 chr1 3468149 3468150 rs7533321 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 394.000000,4614.000000, 0.078674,0.921326, maf-5-some-pop,maf-5-all-pops 611 chr1 3468253 3468254 rs59238677 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,G, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,maf-5-all-pops 611 chr1 3468304 3468305 rs116213832 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, 611 chr1 3468415 3468416 rs114613507 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop,maf-5-all-pops 611 chr1 3468683 3468684 rs375527867 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 611 chr1 3468957 3468958 rs6413780 0 + A A A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4332.000000,676.000000, 0.865016,0.134984, maf-5-some-pop 611 chr1 3468991 3468992 rs59039040 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop,maf-5-all-pops 611 chr1 3469016 3469017 rs150164312 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4924.000000,84.000000, 0.983227,0.016773, 611 chr1 3469028 3469029 rs61320690 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 611 chr1 3469088 3469089 rs7355038 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 441.000000,4567.000000, 0.088059,0.911941, maf-5-some-pop,maf-5-all-pops 611 chr1 3469947 3469948 rs72853567 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 611 chr1 3470082 3470083 rs145371585 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 611 chr1 3470121 3470122 rs10909964 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4558.000000,450.000000, 0.910144,0.089856, maf-5-some-pop,maf-5-all-pops 611 chr1 3470140 3470141 rs376991818 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, 611 chr1 3470362 3470363 rs10909965 0 + T T G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1156.000000,3852.000000, 0.230831,0.769169, maf-5-some-pop,maf-5-all-pops 611 chr1 3470380 3470381 rs12078542 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop,maf-5-all-pops 611 chr1 3470696 3470697 rs112661244 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 G,T, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop,maf-5-all-pops 611 chr1 3470813 3470814 rs74050582 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 611 chr1 3470887 3470888 rs72853571 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop 611 chr1 3470892 3470893 rs115729404 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 85.000000,4923.000000, 0.016973,0.983027, 611 chr1 3470906 3470907 rs146401417 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,LUNTER, 2 -,G, 104.000000,4904.000000, 0.020767,0.979233, 611 chr1 3470934 3470935 rs117457660 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 611 chr1 3470972 3470973 rs59048512 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 611 chr1 3471094 3471095 rs74048603 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 611 chr1 3471290 3471291 rs7554029 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4605.000000,403.000000, 0.919529,0.080471, maf-5-some-pop,maf-5-all-pops 611 chr1 3472345 3472346 rs77858489 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop,maf-5-all-pops 611 chr1 3472392 3472393 rs7516641 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3504.000000,1504.000000, 0.699681,0.300319, maf-5-some-pop 611 chr1 3472396 3472397 rs7516644 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 4810.000000,198.000000, 0.960463,0.039537, maf-5-some-pop 611 chr1 3472544 3472545 rs7512442 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,PERLEGEN,TISHKOFF,WI_SSAHASNP, 2 C,G, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop 611 chr1 3472750 3472751 rs878062 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,PERLEGEN,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop,maf-5-all-pops 611 chr1 3472803 3472804 rs59424892 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 611 chr1 3472851 3472852 rs57653990 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 611 chr1 3472884 3472885 rs75716600 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4816.000000,192.000000, 0.961661,0.038339, maf-5-some-pop,maf-5-all-pops 611 chr1 3472927 3472928 rs878063 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 1525.000000,3483.000000, 0.304513,0.695487, maf-5-some-pop 611 chr1 3472951 3472952 rs7520098 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 781.000000,4227.000000, 0.155950,0.844050, maf-5-some-pop,maf-5-all-pops 611 chr1 3472962 3472963 rs78511956 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 611 chr1 3473136 3473137 rs145494380 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 611 chr1 3473154 3473155 rs57692280 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 704.000000,4304.000000, 0.140575,0.859425, maf-5-some-pop,maf-5-all-pops 611 chr1 3473191 3473192 rs115372619 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 611 chr1 3473273 3473274 rs116993728 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 611 chr1 3473363 3473364 rs75261080 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 611 chr1 3473427 3473428 rs79386324 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 611 chr1 3473469 3473470 rs138382094 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 4907.000000,101.000000, 0.979832,0.020168, 611 chr1 3473824 3473825 rs75118127 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 611 chr1 3474045 3474046 rs114424306 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop,maf-5-all-pops 611 chr1 3474366 3474367 rs79376744 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 611 chr1 3474422 3474423 rs74048612 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 611 chr1 3474467 3474468 rs10909966 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop 611 chr1 3474524 3474525 rs12069523 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 611 chr1 3474604 3474605 rs12069532 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP, 2 A,G, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop 611 chr1 3474867 3474868 rs77524887 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 611 chr1 3475145 3475146 rs74324014 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 611 chr1 3475200 3475201 rs13374641 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop 611 chr1 3475369 3475370 rs10909967 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop 611 chr1 3475506 3475507 rs113426263 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, 611 chr1 3476014 3476015 rs60423097 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 611 chr1 3476086 3476090 rs538805487 0 + AAAA AAAA -/AAAA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AAAA, 1636.000000,3372.000000, 0.326677,0.673323, 611 chr1 3476278 3476279 rs2794345 0 - A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 611 chr1 3476333 3476334 rs139247464 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, 611 chr1 3476346 3476347 rs7544344 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,WI_SSAHASNP, 2 A,G, 155.000000,4853.000000, 0.030950,0.969050, 611 chr1 3476398 3476401 rs554233563 0 + CCC CCC -/CCC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CCC, 130.000000,4878.000000, 0.025959,0.974042, 611 chr1 3476498 3476499 rs56920770 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4887.000000,121.000000, 0.975839,0.024161, 611 chr1 3476836 3476837 rs72633402 0 + C C C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4898.000000,110.000000, 0.978035,0.021965, 611 chr1 3476975 3476976 rs74048618 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 611 chr1 3477414 3477418 rs138354618 0 + GGCT GGCT -/GGCT genomic deletion unknown 0 0 intron,near-gene-5 range 1 6 1000GENOMES,BL,EVA-GONL,LUNTER,PJP,SSMP, 2 -,GGCT, 1371.000000,3637.000000, 0.273762,0.726238, 611 chr1 3477694 3477695 rs76817982 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 611 chr1 3477820 3477820 rs199588481 0 + - - -/A genomic insertion unknown 0 0 intron,near-gene-5 between 1 2 1000GENOMES,SSMP, 2 -,A, 4901.000000,107.000000, 0.978634,0.021366, 611 chr1 3477821 3477822 rs547535388 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,SSIP, 2 C,G, 4901.000000,107.000000, 0.978634,0.021366, 611 chr1 3478035 3478036 rs554515204 0 + G G -/G genomic deletion unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 -,G, 54.000000,4954.000000, 0.010783,0.989217, 611 chr1 3478228 3478229 rs116911050 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 77.000000,4931.000000, 0.015375,0.984625, 611 chr1 3478289 3478290 rs74048619 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 289.000000,4719.000000, 0.057708,0.942292, maf-5-some-pop 611 chr1 3478411 3478412 rs150463965 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4929.000000,79.000000, 0.984225,0.015775, 611 chr1 3478465 3478466 rs76426398 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, 611 chr1 3478716 3478717 rs533206898 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,SSIP, 2 C,G, 136.000000,4872.000000, 0.027157,0.972844, 611 chr1 3479334 3479335 rs7525042 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2225.000000,2783.000000, 0.444289,0.555711, maf-5-some-pop,maf-5-all-pops 611 chr1 3479524 3479525 rs59629050 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 A,C, 64.000000,4944.000000, 0.012780,0.987220, maf-5-some-pop,maf-5-all-pops 611 chr1 3479589 3479590 rs59493396 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 611 chr1 3479741 3479742 rs10909968 0 + A A A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3139.000000,1869.000000, 0.626797,0.373203, maf-5-some-pop,maf-5-all-pops 611 chr1 3479840 3479841 rs188336265 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, 611 chr1 3479885 3479886 rs74757774 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 611 chr1 3479940 3479941 rs114367859 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 611 chr1 3480106 3480107 rs117556715 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 611 chr1 3480161 3480162 rs77039417 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop 611 chr1 3480412 3480413 rs74346751 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 611 chr1 3480664 3480665 rs12082190 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2195.000000,2813.000000, 0.438299,0.561701, maf-5-some-pop,maf-5-all-pops 611 chr1 3480714 3480715 rs74048623 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 611 chr1 3480723 3480724 rs181674010 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 611 chr1 3480732 3480733 rs149019651 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4932.000000,76.000000, 0.984824,0.015176, 611 chr1 3480789 3480790 rs74048624 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 611 chr1 3480994 3480995 rs59425749 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 611 chr1 3481014 3481015 rs117047788 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 611 chr1 3481072 3481073 rs60609290 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,C, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 611 chr1 3481183 3481184 rs113235815 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop,maf-5-all-pops 611 chr1 3481331 3481332 rs78517021 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 611 chr1 3481348 3481349 rs12756207 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2599.000000,2409.000000, 0.518970,0.481030, maf-5-some-pop,maf-5-all-pops 611 chr1 3481690 3481691 rs117159993 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,maf-5-all-pops 611 chr1 3481935 3481936 rs78000012 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,maf-5-all-pops 611 chr1 3481968 3481969 rs2794352 0 - G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 611 chr1 3482170 3482171 rs7515919 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,WI_SSAHASNP, 2 G,T, 4932.000000,76.000000, 0.984824,0.015176, 611 chr1 3482174 3482175 rs7524959 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,WI_SSAHASNP, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 611 chr1 3482394 3482395 rs7518226 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 611 chr1 3482490 3482491 rs79241523 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 78.000000,4930.000000, 0.015575,0.984425, 611 chr1 3482682 3482683 rs60955331 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 611 chr1 3482703 3482704 rs13375456 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 611 chr1 3483341 3483342 rs947356 0 - C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3483360 3483361 rs880801 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1122.000000,3886.000000, 0.224042,0.775958, maf-5-some-pop 611 chr1 3483371 3483372 rs74686086 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 611 chr1 3483440 3483441 rs74048627 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 611 chr1 3483499 3483500 rs10909971 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop 611 chr1 3483557 3483558 rs115528446 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 72.000000,4936.000000, 0.014377,0.985623, 611 chr1 3483680 3483681 rs117872586 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 611 chr1 3483944 3483945 rs74048628 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, maf-5-some-pop,maf-5-all-pops 611 chr1 3483953 3483954 rs74048629 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 611 chr1 3484001 3484002 rs74048630 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 G,T, 4881.000000,127.000000, 0.974641,0.025359, maf-5-some-pop,maf-5-all-pops 611 chr1 3484005 3484006 rs556128556 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSIP, 2 G,T, 4875.000000,133.000000, 0.973442,0.026557, 611 chr1 3484074 3484075 rs11806716 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,TISHKOFF, 2 A,G, 4750.000000,258.000000, 0.948482,0.051518, maf-5-some-pop,maf-5-all-pops 611 chr1 3484092 3484092 rs527346002 0 + - - -/C/CC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 3 -,C,CC, 4527.000000,411.000000,70.000000, 0.903954,0.082069,0.013978, 611 chr1 3484190 3484191 rs116321925 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, 611 chr1 3484298 3484299 rs118078790 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 611 chr1 3484314 3484315 rs1539128 0 - C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3484352 3484353 rs78283552 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4658.000000,350.000000, 0.930112,0.069888, maf-5-some-pop 611 chr1 3484572 3484573 rs61762177 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop 611 chr1 3484601 3484602 rs117017592 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 611 chr1 3484602 3484603 rs72853588 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 611 chr1 3484821 3484822 rs74553677 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop,maf-5-all-pops 611 chr1 3484899 3484900 rs10127607 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,C, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,maf-5-all-pops 611 chr1 3484921 3484922 rs56410789 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,G, 383.000000,4625.000000, 0.076478,0.923522, maf-5-some-pop,maf-5-all-pops 611 chr1 3484968 3484969 rs12732239 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 611 chr1 3484972 3484973 rs12744669 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSAHASNP, 2 A,T, 76.000000,4932.000000, 0.015176,0.984824, 611 chr1 3485052 3485053 rs74048632 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 611 chr1 3485107 3485108 rs75995598 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, 611 chr1 3485124 3485125 rs115948343 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop,maf-5-all-pops 611 chr1 3485251 3485252 rs114332395 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 611 chr1 3485427 3485428 rs75820626 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 611 chr1 3485562 3485562 rs61428836 0 + - - -/G genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 4217.000000,791.000000, 0.842053,0.157947, 611 chr1 3486014 3486015 rs868611 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4414.000000,594.000000, 0.881390,0.118610, maf-5-some-pop 611 chr1 3486122 3486123 rs11586018 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop,maf-5-all-pops 611 chr1 3486173 3486174 rs143687793 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 611 chr1 3486312 3486313 rs75463977 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 611 chr1 3486651 3486652 rs11806148 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 496.000000,4512.000000, 0.099041,0.900958, maf-5-some-pop 611 chr1 3486749 3486750 rs113613690 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 611 chr1 3486808 3486809 rs116161231 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, 611 chr1 3487168 3487169 rs78130504 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 611 chr1 3487303 3487304 rs79568147 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, 611 chr1 3487921 3487922 rs56365936 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4807.000000,201.000000, 0.959864,0.040136, maf-5-some-pop 611 chr1 3488156 3488157 rs61762178 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,EVA-GONL,SSMP, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 611 chr1 3488238 3488239 rs118038352 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 611 chr1 3488284 3488285 rs76663737 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ENSEMBL,EVA-GONL, 2 A,G, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop,maf-5-all-pops 611 chr1 3488293 3488294 rs571897741 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 408.000000,4600.000000, 0.081470,0.918530, 611 chr1 3488298 3488299 rs531119362 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4590.000000,418.000000, 0.916534,0.083467, 611 chr1 3488299 3488300 rs75683812 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ENSEMBL, 2 A,G, 4544.000000,464.000000, 0.907348,0.092652, 611 chr1 3488307 3488308 rs140497795 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 436.000000,4572.000000, 0.087061,0.912939, 611 chr1 3488311 3488312 rs535874508 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, 611 chr1 3488327 3488328 rs552513540 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4593.000000,415.000000, 0.917133,0.082867, 611 chr1 3488386 3488387 rs2794351 0 - G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 611 chr1 3488424 3488425 rs2794350 0 - C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SC_JCM, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 611 chr1 3488436 3488437 rs3001108 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SC_JCM, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 611 chr1 3488611 3488612 rs117840399 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, 611 chr1 3488796 3488797 rs377687293 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4740.000000,268.000000, 0.946486,0.053514, 611 chr1 3489063 3489064 rs146849918 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, 611 chr1 3489625 3489626 rs7533029 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4513.000000,495.000000, 0.901158,0.098842, maf-5-some-pop 611 chr1 3489639 3489640 rs115014124 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 611 chr1 3489694 3489695 rs574735242 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, 611 chr1 3490150 3490151 rs6424084 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4390.000000,618.000000, 0.876597,0.123403, maf-5-some-pop 611 chr1 3490247 3490248 rs541211780 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSIP, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, 611 chr1 3490262 3490263 rs7535878 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,TISHKOFF,WI_SSAHASNP, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,maf-5-all-pops 611 chr1 3490352 3490353 rs115334335 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 611 chr1 3490620 3490621 rs34444449 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4755.000000,253.000000, 0.949481,0.050519, maf-5-some-pop 611 chr1 3490633 3490634 rs59849089 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 530.000000,4478.000000, 0.105831,0.894169, maf-5-some-pop 611 chr1 3491106 3491107 rs4431782 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 702.000000,4306.000000, 0.140176,0.859824, maf-5-some-pop 611 chr1 3491142 3491143 rs143774881 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, 611 chr1 3491308 3491309 rs77066806 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4268.000000,740.000000, 0.852236,0.147764, 611 chr1 3491484 3491485 rs150750108 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 611 chr1 3491498 3491499 rs115753535 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, 611 chr1 3491573 3491574 rs74048636 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,maf-5-all-pops 611 chr1 3491785 3491786 rs4648394 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4615.000000,393.000000, 0.921526,0.078474, maf-5-some-pop 611 chr1 3492089 3492090 rs10909972 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop,maf-5-all-pops 611 chr1 3492143 3492144 rs139713475 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 611 chr1 3492171 3492172 rs113253193 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, 611 chr1 3492196 3492196 rs33989938 0 + - - -/CG/TCTTACG/TCTTATG/TG genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BL,BUSHMAN,HGSV,TISHKOFF, 5 -,CG,TCTTACG,TCTTATG,TG, 1332.000000,50.000000,61.000000,364.000000,3201.000000, 0.265975,0.009984,0.012180,0.072684,0.639177, 611 chr1 3492218 3492219 rs4648525 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,PJP,SSMP,WI_SSAHASNP, 2 A,G, 4169.000000,839.000000, 0.832468,0.167532, 611 chr1 3492290 3492291 rs150217081 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 611 chr1 3492291 3492292 rs12408628 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 529.000000,4479.000000, 0.105631,0.894369, 611 chr1 3492503 3492504 rs61445693 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4816.000000,192.000000, 0.961661,0.038339, maf-5-some-pop,maf-5-all-pops 611 chr1 3492553 3492556 rs34729687 0 + CTC CTC -/CTC genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,CTC, 1965.000000,3043.000000, 0.392372,0.607628, 611 chr1 3492881 3492882 rs185835182 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 611 chr1 3493139 3493140 rs6694608 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop,maf-5-all-pops 611 chr1 3493211 3493212 rs149317421 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 611 chr1 3493263 3493264 rs2821056 0 - A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3493341 3493342 rs143574151 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 59.000000,4949.000000, 0.011781,0.988219, 611 chr1 3493715 3493716 rs148031076 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 611 chr1 3493784 3493785 rs7513242 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,TISHKOFF,WI_SSAHASNP, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop,maf-5-all-pops 611 chr1 3493818 3493819 rs7513251 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop,maf-5-all-pops 611 chr1 3493970 3493971 rs75884503 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 611 chr1 3494078 3494079 rs12080677 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop 611 chr1 3494104 3494105 rs79880502 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 611 chr1 3494440 3494441 rs139824312 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 611 chr1 3494460 3494461 rs141493141 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 611 chr1 3494500 3494501 rs533490589 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSIP, 2 C,G, 120.000000,4888.000000, 0.023962,0.976038, 611 chr1 3494694 3494695 rs12406782 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4452.000000,556.000000, 0.888978,0.111022, maf-5-some-pop 611 chr1 3494893 3494894 rs543504466 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSIP, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, 611 chr1 3495000 3495001 rs566127264 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,G, 57.000000,4951.000000, 0.011382,0.988618, 611 chr1 3495100 3495101 rs369635231 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 -,G, 1592.000000,3416.000000, 0.317891,0.682109, 611 chr1 3495107 3495108 rs555377849 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 611 chr1 3495224 3495225 rs115154972 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 227.000000,4781.000000, 0.045327,0.954673, maf-5-some-pop 611 chr1 3495253 3495254 rs74048641 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 C,T, 4759.000000,249.000000, 0.950280,0.049720, maf-5-some-pop,maf-5-all-pops 611 chr1 3495280 3495283 rs61161473 0 + CAA CAA -/CAA genomic deletion unknown 0 0 intron range 1 11 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,CAA, 3390.000000,1618.000000, 0.676917,0.323083, 611 chr1 3495414 3495415 rs76613457 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 327.000000,31.000000, 0.913408,0.086592, maf-5-some-pop 611 chr1 3495436 3495437 rs2794342 0 - T T A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSAHASNP, 2 A,G, 6.000000,4.000000, 0.600000,0.400000, maf-5-some-pop,maf-5-all-pops 611 chr1 3495468 3495469 rs56044258 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,G, 1020.000000,3988.000000, 0.203674,0.796326, maf-5-some-pop,maf-5-all-pops 611 chr1 3495671 3495672 rs10909973 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,G, 827.000000,4181.000000, 0.165136,0.834864, maf-5-some-pop 611 chr1 3495815 3495816 rs79521133 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, maf-5-some-pop,maf-5-all-pops 611 chr1 3495971 3495972 rs111749967 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 611 chr1 3496035 3496036 rs72853598 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 611 chr1 3496053 3496054 rs2821052 0 - G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 611 chr1 3496129 3496130 rs11585159 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,JMKIDD_LAB,TISHKOFF, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 611 chr1 3496132 3496133 rs11585907 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,JMKIDD_LAB,TISHKOFF, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop,maf-5-all-pops 611 chr1 3496142 3496143 rs11583682 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 611 chr1 3496252 3496266 rs144928681 0 + CCTCAGAAGAATGC CCTCAGAAGAATGC -/CCTCAGAAGAATGC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,CCTCAGAAGAATGC, 151.000000,4857.000000, 0.030152,0.969848, 611 chr1 3496739 3496740 rs144688841 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 611 chr1 3496885 3496886 rs111468489 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 611 chr1 3496958 3496959 rs190246571 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 611 chr1 3497131 3497132 rs5772110 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 9 1000GENOMES,ABI,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 2940.000000,2068.000000, 0.587061,0.412939, 611 chr1 3497186 3497187 rs112884116 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 4705.000000,303.000000, 0.939497,0.060503, maf-5-some-pop,maf-5-all-pops 611 chr1 3497208 3497208 rs139714087 0 + - - -/C genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 4775.000000,233.000000, 0.953474,0.046526, 611 chr1 3497282 3497283 rs114558695 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 611 chr1 3497298 3497317 rs553965266 0 + GGCAGGGCCAGGGTGGGAT GGCAGGGCCAGGGTGGGAT -/GGCAGGGCCAGGGTGGGAT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GGCAGGGCCAGGGTGGGAT, 57.000000,4951.000000, 0.011382,0.988618, 611 chr1 3497842 3497843 rs12084388 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,SC_SNP,TISHKOFF, 2 C,G, 4885.000000,123.000000, 0.975439,0.024561, 611 chr1 3497946 3497947 rs573413591 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, 611 chr1 3497993 3497994 rs56722379 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,HGSV,SSMP, 2 C,T, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop,maf-5-all-pops 611 chr1 3497994 3497995 rs12041495 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3418.000000,1590.000000, 0.682508,0.317492, maf-5-some-pop,maf-5-all-pops 611 chr1 3498382 3498383 rs7528821 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3775.000000,1233.000000, 0.753794,0.246206, maf-5-some-pop,maf-5-all-pops 611 chr1 3498477 3498478 rs7528917 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3556.000000,1452.000000, 0.710064,0.289936, maf-5-some-pop,maf-5-all-pops 611 chr1 3498670 3498671 rs7536401 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1518.000000,3490.000000, 0.303115,0.696885, maf-5-some-pop,maf-5-all-pops 611 chr1 3499066 3499067 rs10909974 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3632.000000,1376.000000, 0.725240,0.274760, maf-5-some-pop,maf-5-all-pops 611 chr1 3499077 3499078 rs75723975 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 611 chr1 3499149 3499150 rs10909976 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 3561.000000,1447.000000, 0.711062,0.288938, maf-5-some-pop,maf-5-all-pops 611 chr1 3499214 3499215 rs60490092 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 611 chr1 3499229 3499230 rs78974574 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop,maf-5-all-pops 611 chr1 3499295 3499296 rs75898828 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4741.000000,267.000000, 0.946685,0.053315, maf-5-some-pop 611 chr1 3499407 3499408 rs4648526 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3514.000000,1494.000000, 0.701677,0.298323, maf-5-some-pop,maf-5-all-pops 611 chr1 3499528 3499529 rs2794335 0 - C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3499574 3499575 rs76127418 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 611 chr1 3500227 3500228 rs552943870 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 853.000000,4155.000000, 0.170327,0.829673, 611 chr1 3500507 3500508 rs144401544 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, 611 chr1 3500509 3500510 rs76663739 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,SSMP, 2 C,T, 3805.000000,1203.000000, 0.759784,0.240216, maf-5-some-pop,maf-5-all-pops 611 chr1 3500705 3500706 rs75713517 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 611 chr1 3500923 3500924 rs74048645 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 611 chr1 3500979 3500980 rs116015934 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, 611 chr1 3501174 3501175 rs12043059 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3937.000000,1071.000000, 0.786142,0.213858, maf-5-some-pop,maf-5-all-pops 611 chr1 3501186 3501187 rs78555476 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop,maf-5-all-pops 611 chr1 3501194 3501195 rs77677121 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 611 chr1 3501383 3501384 rs79583357 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 611 chr1 3501392 3501393 rs12409706 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3388.000000,1620.000000, 0.676518,0.323482, maf-5-some-pop,maf-5-all-pops 611 chr1 3501599 3501600 rs114325920 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop,maf-5-all-pops 611 chr1 3501614 3501615 rs539953950 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4825.000000,183.000000, 0.963458,0.036541, 611 chr1 3501624 3501625 rs560284536 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4835.000000,173.000000, 0.965455,0.034545, 611 chr1 3501626 3501627 rs532383486 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, 611 chr1 3501815 3501816 rs530105250 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 226.000000,4782.000000, 0.045128,0.954872, 611 chr1 3501841 3501842 rs111203515 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 611 chr1 3501911 3501915 rs201557474 0 + GTGA GTGA -/GTGA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GTGA, 62.000000,4946.000000, 0.012380,0.987620, 611 chr1 3501969 3501973 rs138346708 0 + GTGA GTGA -/GTGA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GTGA, 62.000000,4946.000000, 0.012380,0.987620, 611 chr1 3502004 3502005 rs184557157 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 611 chr1 3502190 3502191 rs553938230 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, 611 chr1 3502207 3502208 rs150949626 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 611 chr1 3502286 3502287 rs62653679 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 A,G, 3846.000000,1162.000000, 0.767971,0.232029, 611 chr1 3502354 3502355 rs375122644 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 133.000000,4875.000000, 0.026557,0.973442, 611 chr1 3502568 3502569 rs375994045 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 A,C, 4934.000000,74.000000, 0.985224,0.014776, 611 chr1 3502569 3502570 rs369301416 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,G, 4934.000000,74.000000, 0.985224,0.014776, 611 chr1 3502759 3502760 rs117934925 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 225.000000,4783.000000, 0.044928,0.955072, maf-5-some-pop,maf-5-all-pops 611 chr1 3502874 3502875 rs115787582 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 611 chr1 3503081 3503082 rs76224458 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 421.000000,4587.000000, 0.084065,0.915935, maf-5-some-pop,maf-5-all-pops 611 chr1 3503237 3503238 rs78946699 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, 611 chr1 3503353 3503354 rs10909977 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2647.000000,2361.000000, 0.528554,0.471446, maf-5-some-pop,maf-5-all-pops 611 chr1 3503396 3503397 rs75939298 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop 611 chr1 3503511 3503512 rs112222574 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop 611 chr1 3503566 3503567 rs12133810 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2570.000000,2438.000000, 0.513179,0.486821, maf-5-some-pop,maf-5-all-pops 611 chr1 3503587 3503588 rs76932621 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 611 chr1 3504366 3504367 rs75192096 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 611 chr1 3504485 3504486 rs149116203 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,EVA-GONL, 2 C,G, 3498.000000,1510.000000, 0.698482,0.301518, 611 chr1 3504486 3504487 rs530762981 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 1510.000000,3498.000000, 0.301518,0.698482, 611 chr1 3504506 3504507 rs575038871 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 1772.000000,3236.000000, 0.353834,0.646166, 611 chr1 3504509 3504510 rs567422217 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 3236.000000,1772.000000, 0.646166,0.353834, 611 chr1 3504517 3504518 rs536161824 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 3721.000000,1287.000000, 0.743011,0.256989, 611 chr1 3504519 3504520 rs147481572 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,EVA-GONL, 2 A,G, 3721.000000,1287.000000, 0.743011,0.256989, 611 chr1 3504539 3504540 rs572193701 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 3809.000000,1199.000000, 0.760583,0.239417, 611 chr1 3504540 3504541 rs535004313 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 1199.000000,3809.000000, 0.239417,0.760583, 611 chr1 3504757 3504758 rs562768712 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, 611 chr1 3504759 3504760 rs537524743 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4472.000000,536.000000, 0.892971,0.107029, 611 chr1 3504763 3504764 rs557282287 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 536.000000,4472.000000, 0.107029,0.892971, 611 chr1 3504822 3504823 rs574131018 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4729.000000,279.000000, 0.944289,0.055711, 611 chr1 3504829 3504830 rs542962528 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4729.000000,279.000000, 0.944289,0.055711, 611 chr1 3504833 3504834 rs559610774 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, 611 chr1 3505080 3505081 rs3122612 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4219.000000,789.000000, 0.842452,0.157548, 611 chr1 3505196 3505197 rs149377824 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, 611 chr1 3505753 3505754 rs12138798 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 3643.000000,1365.000000, 0.727436,0.272564, maf-5-some-pop,maf-5-all-pops 611 chr1 3505782 3505783 rs187604608 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 611 chr1 3505786 3505787 rs148485508 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,LUNTER, 2 -,T, 81.000000,4927.000000, 0.016174,0.983826, 611 chr1 3505844 3505845 rs75346041 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 611 chr1 3505900 3505901 rs10909978 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1402.000000,3606.000000, 0.279952,0.720048, maf-5-some-pop,maf-5-all-pops 611 chr1 3505914 3505915 rs77991337 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 221.000000,4787.000000, 0.044129,0.955871, maf-5-some-pop 611 chr1 3506086 3506087 rs10909979 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 3652.000000,1356.000000, 0.729233,0.270767, maf-5-some-pop,maf-5-all-pops 611 chr1 3506325 3506326 rs57453372 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,T, 389.000000,4619.000000, 0.077676,0.922324, maf-5-some-pop 611 chr1 3506496 3506497 rs2794320 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2275.000000,2733.000000, 0.454273,0.545727, maf-5-some-pop,maf-5-all-pops 611 chr1 3506668 3506669 rs115790072 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 611 chr1 3507001 3507002 rs117427662 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop,maf-5-all-pops 611 chr1 3507014 3507015 rs56327544 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3311.000000,1697.000000, 0.661142,0.338858, maf-5-some-pop,maf-5-all-pops 611 chr1 3507394 3507395 rs555984553 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4926.000000,82.000000, 0.983626,0.016374, 611 chr1 3507501 3507502 rs76405910 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 611 chr1 3507516 3507517 rs79315961 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 611 chr1 3507538 3507539 rs117280557 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 611 chr1 3507544 3507545 rs79544802 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 611 chr1 3507811 3507812 rs12138013 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1984.000000,3024.000000, 0.396166,0.603834, maf-5-some-pop,maf-5-all-pops 611 chr1 3507847 3507848 rs116070709 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, 611 chr1 3507950 3507951 rs4233026 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 768.000000,4240.000000, 0.153355,0.846645, maf-5-some-pop,maf-5-all-pops 611 chr1 3508173 3508174 rs74641075 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 611 chr1 3508187 3508188 rs76782544 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 481.000000,4527.000000, 0.096046,0.903954, maf-5-some-pop 611 chr1 3508248 3508249 rs4571911 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP, 2 A,G, 4793.000000,215.000000, 0.957069,0.042931, maf-5-some-pop 611 chr1 3508319 3508320 rs12047815 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 G,T, 1655.000000,3353.000000, 0.330471,0.669529, maf-5-some-pop,maf-5-all-pops 611 chr1 3508520 3508521 rs61762207 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 1622.000000,3386.000000, 0.323882,0.676118, maf-5-some-pop,maf-5-all-pops 611 chr1 3508521 3508522 rs115221070 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 221.000000,4787.000000, 0.044129,0.955871, maf-5-some-pop 611 chr1 3508850 3508851 rs115868017 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 254.000000,4754.000000, 0.050719,0.949281, maf-5-some-pop 611 chr1 3508920 3508921 rs78335503 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 611 chr1 3509390 3509391 rs148310063 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,A, 219.000000,4789.000000, 0.043730,0.956270, 611 chr1 3509669 3509670 rs10909980 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 2925.000000,2083.000000, 0.584065,0.415935, maf-5-some-pop,maf-5-all-pops 611 chr1 3509912 3509913 rs79595966 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 611 chr1 3510307 3510308 rs376714802 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 611 chr1 3510308 3510309 rs79522103 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 611 chr1 3510369 3510370 rs75883047 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop 611 chr1 3510373 3510374 rs80100000 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop 611 chr1 3510543 3510544 rs6702451 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 3435.000000,1573.000000, 0.685903,0.314097, maf-5-some-pop,maf-5-all-pops 611 chr1 3510672 3510673 rs74717216 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 264.000000,4744.000000, 0.052716,0.947284, maf-5-some-pop,maf-5-all-pops 611 chr1 3510884 3510885 rs75279253 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop,maf-5-all-pops 611 chr1 3510929 3510930 rs144108869 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, 611 chr1 3511004 3511005 rs74510287 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop 611 chr1 3511063 3511064 rs115776923 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 611 chr1 3511294 3511295 rs7544357 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 611 chr1 3511583 3511584 rs57876771 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop,maf-5-all-pops 611 chr1 3511740 3511741 rs55901423 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 611 chr1 3511878 3511879 rs111792035 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 611 chr1 3511933 3511934 rs7513275 0 + A A A/G genomic single unknown 0 0 missense exact 1 15 1000GENOMES,BGI,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3870.000000,1138.000000, 0.772764,0.227236, maf-5-some-pop,maf-5-all-pops 611 chr1 3512187 3512188 rs7554061 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3739.000000,1269.000000, 0.746605,0.253395, maf-5-some-pop,maf-5-all-pops 611 chr1 3512337 3512338 rs60835757 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 278.000000,4730.000000, 0.055511,0.944489, maf-5-some-pop 611 chr1 3512340 3512341 rs2794327 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2016.000000,2992.000000, 0.402556,0.597444, maf-5-some-pop,maf-5-all-pops 611 chr1 3512468 3512469 rs75124866 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop 611 chr1 3512621 3512622 rs77701767 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop,maf-5-all-pops 611 chr1 3513001 3513017 rs138102317 0 + CCTGCGCCATCCCCTG CCTGCGCCATCCCCTG -/CCTGCGCCATCCCCTG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,CCTGCGCCATCCCCTG, 229.000000,4779.000000, 0.045727,0.954273, 611 chr1 3513225 3513226 rs563024811 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 611 chr1 3513246 3513247 rs6697282 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3791.000000,1217.000000, 0.756989,0.243011, 611 chr1 3513563 3513564 rs113705732 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 76.000000,4932.000000, 0.015176,0.984824, 611 chr1 3513736 3513737 rs3001105 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 790.000000,4218.000000, 0.157748,0.842252, maf-5-some-pop,maf-5-all-pops 611 chr1 3513879 3513880 rs2995005 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3979.000000,1029.000000, 0.794529,0.205471, maf-5-some-pop,maf-5-all-pops 611 chr1 3513928 3513929 rs74048652 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 611 chr1 3513965 3513966 rs6690231 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop,maf-5-all-pops 611 chr1 3513982 3513983 rs36017484 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,BL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA, 2 G,T, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop,maf-5-all-pops 611 chr1 3513995 3513996 rs3001106 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 A,G, 443.000000,4565.000000, 0.088459,0.911542, maf-5-some-pop,maf-5-all-pops 611 chr1 3514197 3514198 rs79817688 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,maf-5-all-pops 611 chr1 3514269 3514270 rs3001107 0 + A A A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 481.000000,4527.000000, 0.096046,0.903954, maf-5-some-pop 611 chr1 3514360 3514361 rs2995006 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 418.000000,4590.000000, 0.083466,0.916534, maf-5-some-pop 611 chr1 3514750 3514751 rs6701230 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 3683.000000,1325.000000, 0.735423,0.264577, maf-5-some-pop,maf-5-all-pops 611 chr1 3515050 3515051 rs78462652 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 254.000000,4754.000000, 0.050719,0.949281, maf-5-some-pop,maf-5-all-pops 611 chr1 3515068 3515068 rs36094767 0 + - - -/C genomic insertion unknown 0 0 intron between 1 10 1000GENOMES,ABI,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 1494.000000,3514.000000, 0.298323,0.701677, 611 chr1 3515094 3515095 rs75773605 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop,maf-5-all-pops 611 chr1 3515192 3515193 rs79675089 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop,maf-5-all-pops 611 chr1 3515279 3515281 rs146218411 0 + CC CC -/CC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,PJP,SSMP, 2 -,CC, 4930.000000,78.000000, 0.984425,0.015575, 611 chr1 3515291 3515292 rs77696155 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,BL,GMI,PJP, 2 C,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 611 chr1 3515382 3515383 rs143533936 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4894.000000,114.000000, 0.977236,0.022764, 611 chr1 3515395 3515396 rs2794328 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4343.000000,665.000000, 0.867212,0.132788, maf-5-some-pop 611 chr1 3515433 3515434 rs2821010 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 814.000000,4194.000000, 0.162540,0.837460, maf-5-some-pop,maf-5-all-pops 611 chr1 3515539 3515540 rs75654140 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4667.000000,341.000000, 0.931909,0.068091, maf-5-some-pop 611 chr1 3515719 3515720 rs79167494 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop 611 chr1 3515729 3515730 rs2821011 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4615.000000,393.000000, 0.921526,0.078474, maf-5-some-pop 611 chr1 3515838 3515839 rs114738346 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop,maf-5-all-pops 611 chr1 3516235 3516236 rs4648395 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3544.000000,1464.000000, 0.707668,0.292332, maf-5-some-pop,maf-5-all-pops 611 chr1 3516419 3516420 rs7552280 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1457.000000,3551.000000, 0.290935,0.709065, maf-5-some-pop,maf-5-all-pops 611 chr1 3516779 3516780 rs4018202 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1465.000000,3543.000000, 0.292532,0.707468, maf-5-some-pop,maf-5-all-pops 611 chr1 3517278 3517279 rs4648528 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1463.000000,3545.000000, 0.292133,0.707867, maf-5-some-pop,maf-5-all-pops 611 chr1 3517476 3517477 rs6703496 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1456.000000,3552.000000, 0.290735,0.709265, maf-5-some-pop,maf-5-all-pops 611 chr1 3517535 3517536 rs6693958 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3552.000000,1456.000000, 0.709265,0.290735, maf-5-some-pop,maf-5-all-pops 611 chr1 3517572 3517573 rs6693971 0 + G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3926.000000,1082.000000, 0.783946,0.216054, maf-5-some-pop 611 chr1 3517747 3517748 rs75465985 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 611 chr1 3518129 3518130 rs12046758 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,GMI,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 611 chr1 3518223 3518224 rs78066551 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4788.000000,220.000000, 0.956070,0.043930, maf-5-some-pop,maf-5-all-pops 611 chr1 3518383 3518384 rs2821012 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop 611 chr1 3518384 3518385 rs74048665 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,G, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop,maf-5-all-pops 611 chr1 3518414 3518415 rs12410528 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 2044.000000,2964.000000, 0.408147,0.591853, maf-5-some-pop 611 chr1 3518418 3518419 rs12401505 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2512.000000,2496.000000, 0.501597,0.498403, maf-5-some-pop,maf-5-all-pops 611 chr1 3518487 3518488 rs60957843 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2496.000000,2512.000000, 0.498403,0.501597, maf-5-some-pop,maf-5-all-pops 611 chr1 3518704 3518705 rs113881340 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop,maf-5-all-pops 611 chr1 3518727 3518728 rs74048668 0 + A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 3722.000000,1286.000000, 0.743211,0.256789, maf-5-some-pop,maf-5-all-pops 611 chr1 3518742 3518743 rs7514061 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2767.000000,2241.000000, 0.552516,0.447484, maf-5-some-pop,maf-5-all-pops 611 chr1 3518908 3518909 rs76496459 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 G,T, 4861.000000,147.000000, 0.970647,0.029353, 611 chr1 3518911 3518912 rs112589871 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 G,T, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop,maf-5-all-pops 611 chr1 3518943 3518944 rs7521546 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3099.000000,1909.000000, 0.618810,0.381190, maf-5-some-pop,maf-5-all-pops 611 chr1 3519161 3519162 rs61737345 0 + G G A/G genomic single unknown 0 0 missense exact 1 7 1000GENOMES,CORNELL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 611 chr1 3519178 3519179 rs2794330 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2877.000000,2131.000000, 0.574481,0.425519, maf-5-some-pop,maf-5-all-pops 611 chr1 3519392 3519393 rs115371870 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 611 chr1 3519433 3519434 rs12024499 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2395.000000,2613.000000, 0.478235,0.521765, maf-5-some-pop,maf-5-all-pops 611 chr1 3519499 3519500 rs78547875 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 611 chr1 3519543 3519544 rs74998818 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop,maf-5-all-pops 611 chr1 3519602 3519603 rs12025426 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3090.000000,1918.000000, 0.617013,0.382987, maf-5-some-pop,maf-5-all-pops 611 chr1 3519641 3519642 rs78970717 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,C, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop,maf-5-all-pops 611 chr1 3519668 3519669 rs116752847 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 611 chr1 3519682 3519683 rs78949361 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 611 chr1 3519866 3519867 rs75869562 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 611 chr1 3519867 3519868 rs59341129 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,G, 95.000000,4913.000000, 0.018970,0.981030, 611 chr1 3520033 3520034 rs10752738 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop 611 chr1 3520126 3520127 rs2821015 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop 611 chr1 3520328 3520331 rs528487984 0 + GCC GCC -/GCC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GCC, 95.000000,4913.000000, 0.018970,0.981030, 611 chr1 3520333 3520334 rs546519578 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 95.000000,4913.000000, 0.018970,0.981030, 611 chr1 3520376 3520395 rs146443812 0 + GCCCCGTCCAGCCACCCTG GCCCCGTCCAGCCACCCTG -/GCCCCGTCCAGCCACCCTG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GCCCCGTCCAGCCACCCTG, 194.000000,4814.000000, 0.038738,0.961262, 611 chr1 3520513 3520514 rs147186742 0 + T T A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 67.000000,4941.000000, 0.013379,0.986621, 611 chr1 3520671 3520672 rs2821016 0 + A A A/C genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop 611 chr1 3520852 3520853 rs61737343 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CORNELL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 611 chr1 3520865 3520866 rs61737344 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CORNELL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 611 chr1 3521053 3521054 rs76372797 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop 611 chr1 3521099 3521100 rs116118465 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 611 chr1 3521389 3521390 rs72855430 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 611 chr1 3521392 3521393 rs76797542 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 611 chr1 3521477 3521478 rs72855431 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 611 chr1 3521548 3521549 rs72855433 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 611 chr1 3521632 3521634 rs201341497 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,CA, 155.000000,4853.000000, 0.030950,0.969050, 611 chr1 3521712 3521716 rs144587389 0 + CACT CACT -/CACT genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CACT, 1621.000000,3387.000000, 0.323682,0.676318, 611 chr1 3521915 3521916 rs12743246 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4000.000000,1008.000000, 0.798722,0.201278, maf-5-some-pop 611 chr1 3521929 3521933 rs138240095 0 + CACT CACT -/CACT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,PJP, 2 -,CACT, 2187.000000,2821.000000, 0.436701,0.563299, 611 chr1 3521930 3521931 rs367557194 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4815.000000,193.000000, 0.961462,0.038538, 611 chr1 3521965 3521966 rs528351983 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 611 chr1 3522048 3522049 rs116469737 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 A,G, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop 611 chr1 3522110 3522111 rs56140438 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,PJP,TISHKOFF, 2 C,T, 4524.000000,484.000000, 0.903355,0.096645, 611 chr1 3522120 3522120 rs150535944 0 + - - -/CACT genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,CACT, 1314.000000,3694.000000, 0.262380,0.737620, 611 chr1 3522131 3522132 rs59902405 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,GMI,HGSV,TISHKOFF, 2 A,T, 3100.000000,1908.000000, 0.619010,0.380990, 611 chr1 3522198 3522199 rs36127958 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3757.000000,1251.000000, 0.750200,0.249800, maf-5-some-pop,maf-5-all-pops 611 chr1 3522213 3522214 rs58072665 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,SSMP, 2 A,G, 347.000000,4661.000000, 0.069289,0.930711, maf-5-some-pop,maf-5-all-pops 611 chr1 3522251 3522253 rs61171592 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,GMI,HGSV,SSMP, 2 -,AT, 415.000000,4593.000000, 0.082867,0.917133, 611 chr1 3522317 3522317 rs200964265 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,A, 4909.000000,99.000000, 0.980232,0.019768, 611 chr1 3522560 3522561 rs35701577 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1033.000000,3975.000000, 0.206270,0.793730, maf-5-some-pop 611 chr1 3522688 3522689 rs76616683 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,TISHKOFF, 2 G,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop 611 chr1 3523337 3523338 rs115433416 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, 611 chr1 3523395 3523396 rs115328528 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 611 chr1 3523579 3523580 rs77283091 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 611 chr1 3523896 3523897 rs2821018 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop 611 chr1 3523917 3523918 rs2821020 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 4721.000000,287.000000, 0.942692,0.057308, maf-5-some-pop 611 chr1 3523996 3524000 rs200736104 0 + AATT AATT -/AATT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AATT, 52.000000,4956.000000, 0.010383,0.989617, 611 chr1 3524098 3524099 rs34680520 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop,maf-5-all-pops 611 chr1 3524142 3524143 rs2821021 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3198.000000,1810.000000, 0.638578,0.361422, maf-5-some-pop,maf-5-all-pops 611 chr1 3524247 3524248 rs74504141 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop 611 chr1 3524289 3524290 rs78038866 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 611 chr1 3524358 3524359 rs114691750 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 G,T, 4954.000000,54.000000, 0.989217,0.010783, 611 chr1 3524590 3524591 rs12096300 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 G,T, 4943.000000,65.000000, 0.987021,0.012979, 611 chr1 3524711 3524712 rs115176445 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,C, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 611 chr1 3524890 3524891 rs2821022 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,T, 1694.000000,3314.000000, 0.338259,0.661741, maf-5-some-pop,maf-5-all-pops 611 chr1 3524905 3524906 rs74048679 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 611 chr1 3525281 3525282 rs116692519 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 611 chr1 3525284 3525285 rs4648529 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3642.000000,1366.000000, 0.727236,0.272764, maf-5-some-pop,maf-5-all-pops 611 chr1 3525320 3525321 rs2794353 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3525531 3525532 rs113632525 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 91.000000,4917.000000, 0.018171,0.981829, 611 chr1 3525606 3525607 rs36031771 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2291.000000,2717.000000, 0.457468,0.542532, maf-5-some-pop,maf-5-all-pops 611 chr1 3525621 3525622 rs10909984 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,C, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 611 chr1 3525638 3525639 rs10909985 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,G, 3221.000000,1787.000000, 0.643171,0.356829, maf-5-some-pop,maf-5-all-pops 611 chr1 3525639 3525640 rs34852522 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 A,G, 2076.000000,2932.000000, 0.414537,0.585463, maf-5-some-pop,maf-5-all-pops 611 chr1 3525835 3525836 rs10909986 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4317.000000,691.000000, 0.862021,0.137979, maf-5-some-pop 611 chr1 3525938 3525939 rs116159646 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 611 chr1 3525999 3526000 rs74659429 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,maf-5-all-pops 611 chr1 3526019 3526020 rs79522215 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,maf-5-all-pops 611 chr1 3526109 3526110 rs72855441 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 611 chr1 3526146 3526147 rs142313095 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 611 chr1 3526240 3526241 rs34222941 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3674.000000,1334.000000, 0.733626,0.266374, maf-5-some-pop,maf-5-all-pops 611 chr1 3526272 3526273 rs114787883 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 A,G, 4884.000000,124.000000, 0.975240,0.024760, 611 chr1 3526313 3526314 rs150153798 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, 611 chr1 3526389 3526390 rs12121341 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 410.000000,4598.000000, 0.081869,0.918131, maf-5-some-pop 611 chr1 3526403 3526404 rs58913621 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 G,T, 4917.000000,91.000000, 0.981829,0.018171, 611 chr1 3526416 3526417 rs78000706 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 611 chr1 3526710 3526711 rs59839028 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 588.000000,4420.000000, 0.117412,0.882588, maf-5-some-pop,maf-5-all-pops 611 chr1 3526904 3526905 rs74421199 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4652.000000,356.000000, 0.928914,0.071086, maf-5-some-pop 611 chr1 3527290 3527291 rs7516425 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1014.000000,3994.000000, 0.202476,0.797524, maf-5-some-pop,maf-5-all-pops 611 chr1 3527365 3527366 rs7525560 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3738.000000,1270.000000, 0.746406,0.253594, maf-5-some-pop,maf-5-all-pops 611 chr1 3527474 3527475 rs138591622 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 87.000000,4921.000000, 0.017372,0.982628, 611 chr1 3527482 3527483 rs148869898 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 611 chr1 3527637 3527638 rs116244295 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 78.000000,4930.000000, 0.015575,0.984425, 611 chr1 3527943 3527944 rs10797402 0 + C C C/G genomic single unknown 0 0 untranslated-5 exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 317.000000,4691.000000, 0.063299,0.936701, 611 chr1 3528081 3528082 rs10797403 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 611 chr1 3528245 3528246 rs546659827 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 611 chr1 3528259 3528260 rs12751514 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 C,T, 3735.000000,1273.000000, 0.745807,0.254193, maf-5-some-pop,maf-5-all-pops 611 chr1 3528271 3528272 rs552038586 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 74.000000,4934.000000, 0.014776,0.985224, 611 chr1 3528292 3528293 rs60020855 0 + C C -/C genomic deletion unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,EVA-GONL,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,C, 3854.000000,1154.000000, 0.769569,0.230431, 611 chr1 3528536 3528537 rs57902798 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 2464.000000,2544.000000, 0.492013,0.507987, maf-5-some-pop,maf-5-all-pops 611 chr1 3528585 3528586 rs78267041 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4655.000000,353.000000, 0.929513,0.070487, maf-5-some-pop 611 chr1 3528859 3528860 rs139174924 0 + C C -/C genomic deletion unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,LUNTER,TISHKOFF, 2 -,C, 52.000000,4956.000000, 0.010383,0.989617, 611 chr1 3528919 3528920 rs35761570 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1161.000000,3847.000000, 0.231829,0.768171, maf-5-some-pop,maf-5-all-pops 611 chr1 3528966 3528967 rs116551529 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, 611 chr1 3529253 3529254 rs76952126 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 349.000000,4659.000000, 0.069688,0.930312, maf-5-some-pop,maf-5-all-pops 611 chr1 3529333 3529334 rs12027874 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,SC_SNP,SSMP, 2 A,C, 146.000000,4862.000000, 0.029153,0.970847, 611 chr1 3529334 3529335 rs12027875 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,SC_SNP,SSMP, 2 C,G, 4862.000000,146.000000, 0.970847,0.029153, 611 chr1 3529388 3529389 rs10909987 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2667.000000,2341.000000, 0.532548,0.467452, maf-5-some-pop,maf-5-all-pops 611 chr1 3529612 3529613 rs74782587 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop,maf-5-all-pops 611 chr1 3529787 3529788 rs139369923 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 611 chr1 3530062 3530063 rs12070289 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP, 2 A,T, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop,maf-5-all-pops 611 chr1 3530590 3530591 rs4648530 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3945.000000,1063.000000, 0.787740,0.212260, maf-5-some-pop,maf-5-all-pops 611 chr1 3530601 3530602 rs116658804 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 611 chr1 3530603 3530604 rs78586220 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 196.000000,4812.000000, 0.039137,0.960863, maf-5-some-pop,maf-5-all-pops 611 chr1 3530668 3530669 rs4648531 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 G,T, 4739.000000,269.000000, 0.946286,0.053714, maf-5-some-pop,maf-5-all-pops 611 chr1 3530710 3530711 rs59300619 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 611 chr1 3530925 3530926 rs564393339 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 611 chr1 3531221 3531222 rs4648396 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 593.000000,4415.000000, 0.118411,0.881589, maf-5-some-pop 611 chr1 3531440 3531441 rs4648397 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4383.000000,625.000000, 0.875200,0.124800, maf-5-some-pop 611 chr1 3531594 3531595 rs4648398 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1525.000000,3483.000000, 0.304513,0.695487, maf-5-some-pop,maf-5-all-pops 611 chr1 3531700 3531701 rs12069712 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 611 chr1 3531920 3531921 rs59988660 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4556.000000,452.000000, 0.909744,0.090256, maf-5-some-pop 611 chr1 3532083 3532084 rs61026690 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4638.000000,370.000000, 0.926118,0.073882, maf-5-some-pop 611 chr1 3532298 3532299 rs947357 0 - G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 611 chr1 3532463 3532464 rs59988821 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop,maf-5-all-pops 611 chr1 3532626 3532627 rs60636539 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop,maf-5-all-pops 611 chr1 3532627 3532628 rs12405423 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1157.000000,3851.000000, 0.231030,0.768970, maf-5-some-pop,maf-5-all-pops 611 chr1 3532642 3532643 rs79603637 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4705.000000,303.000000, 0.939497,0.060503, maf-5-some-pop,maf-5-all-pops 611 chr1 3532702 3532703 rs6693192 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1413.000000,3595.000000, 0.282149,0.717851, maf-5-some-pop,maf-5-all-pops 611 chr1 3532708 3532709 rs6678958 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4096.000000,912.000000, 0.817891,0.182109, maf-5-some-pop 611 chr1 3533042 3533043 rs12033348 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 C,T, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 611 chr1 3533155 3533156 rs116151799 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 611 chr1 3533418 3533419 rs12734949 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 1483.000000,3525.000000, 0.296126,0.703874, maf-5-some-pop,maf-5-all-pops 611 chr1 3533563 3533564 rs55728961 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,C, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop 611 chr1 3533623 3533624 rs56385042 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2442.000000,2566.000000, 0.487620,0.512380, maf-5-some-pop,maf-5-all-pops 611 chr1 3533721 3533722 rs114059369 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 611 chr1 3533921 3533921 rs113593566 0 + - - -/CCGGCT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,CCGGCT, 775.000000,4233.000000, 0.154752,0.845248, 611 chr1 3533986 3533987 rs10797404 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2485.000000,2523.000000, 0.496206,0.503794, maf-5-some-pop,maf-5-all-pops 611 chr1 3534316 3534317 rs115295427 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 611 chr1 3534476 3534477 rs115941719 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop,maf-5-all-pops 611 chr1 3534522 3534523 rs4648532 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1206.000000,3802.000000, 0.240815,0.759185, maf-5-some-pop 611 chr1 3534574 3534575 rs144697046 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 611 chr1 3534705 3534706 rs10909988 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 772.000000,4236.000000, 0.154153,0.845847, maf-5-some-pop 611 chr1 3534791 3534792 rs7522500 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4010.000000,998.000000, 0.800719,0.199281, maf-5-some-pop 611 chr1 3534807 3534808 rs7522507 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop 611 chr1 3534902 3534903 rs78644906 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 611 chr1 3535053 3535054 rs79910673 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop,maf-5-all-pops 611 chr1 3535111 3535112 rs78918330 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop,maf-5-all-pops 611 chr1 3535463 3535464 rs7538707 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1146.000000,3862.000000, 0.228834,0.771166, maf-5-some-pop 611 chr1 3535504 3535505 rs60812771 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 611 chr1 3535549 3535550 rs7525476 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1659.000000,3349.000000, 0.331270,0.668730, maf-5-some-pop,maf-5-all-pops 611 chr1 3535556 3535557 rs7538796 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3349.000000,1659.000000, 0.668730,0.331270, maf-5-some-pop,maf-5-all-pops 611 chr1 3535679 3535680 rs10797406 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,G, 1496.000000,3512.000000, 0.298722,0.701278, maf-5-some-pop,maf-5-all-pops 611 chr1 3535850 3535851 rs80103199 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 611 chr1 3536022 3536023 rs149407488 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 -,C, 84.000000,4924.000000, 0.016773,0.983227, 611 chr1 3536050 3536051 rs72855463 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4158.000000,850.000000, 0.830272,0.169728, maf-5-some-pop 611 chr1 3536069 3536070 rs71634349 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 140.000000,4868.000000, 0.027955,0.972045, 611 chr1 3536135 3536136 rs115265138 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 611 chr1 3536178 3536179 rs12747021 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,TISHKOFF, 2 C,G, 4090.000000,918.000000, 0.816693,0.183307, 611 chr1 3536327 3536328 rs4648533 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4256.000000,752.000000, 0.849840,0.150160, maf-5-some-pop 611 chr1 3536399 3536400 rs4648534 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3497.000000,1511.000000, 0.698283,0.301717, maf-5-some-pop,maf-5-all-pops 611 chr1 3536459 3536460 rs4648535 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4251.000000,757.000000, 0.848842,0.151158, 611 chr1 3536561 3536562 rs4648399 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 737.000000,4271.000000, 0.147165,0.852835, maf-5-some-pop 611 chr1 3536602 3536603 rs12065068 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 611 chr1 3536626 3536626 rs35020651 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,ABI,BILGI_BIOE,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,C, 3232.000000,1776.000000, 0.645367,0.354633, 611 chr1 3537048 3537049 rs80119906 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 611 chr1 3537361 3537362 rs4648400 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 734.000000,4274.000000, 0.146565,0.853435, maf-5-some-pop 611 chr1 3537508 3537509 rs113346860 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCM-HGSC-SUB,EVA-GONL, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 611 chr1 3537634 3537635 rs146509777 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 611 chr1 3537857 3537858 rs4648401 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1093.000000,3915.000000, 0.218251,0.781749, 611 chr1 3537861 3537862 rs60916778 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,HGSV,TISHKOFF, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 611 chr1 3537989 3537990 rs78846576 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 611 chr1 3538023 3538024 rs57669894 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,HGSV, 2 G,T, 4945.000000,63.000000, 0.987420,0.012580, 611 chr1 3538152 3538153 rs57075872 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop 611 chr1 3538304 3538305 rs12723588 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1104.000000,3904.000000, 0.220447,0.779553, maf-5-some-pop 611 chr1 3538479 3538480 rs4400556 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1091.000000,3917.000000, 0.217851,0.782149, maf-5-some-pop,maf-5-all-pops 611 chr1 3538500 3538501 rs4364818 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2219.000000,2789.000000, 0.443091,0.556909, maf-5-some-pop,maf-5-all-pops 611 chr1 3538758 3538759 rs12403935 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 1142.000000,3866.000000, 0.228035,0.771965, 611 chr1 3538834 3538835 rs6424087 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2767.000000,2241.000000, 0.552516,0.447484, maf-5-some-pop,maf-5-all-pops 612 chr1 3539081 3539082 rs10909989 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1095.000000,3913.000000, 0.218650,0.781350, maf-5-some-pop 612 chr1 3539480 3539481 rs10909990 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 954.000000,4054.000000, 0.190495,0.809505, maf-5-some-pop 612 chr1 3539602 3539603 rs12128132 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP, 2 A,C, 123.000000,4885.000000, 0.024561,0.975439, 612 chr1 3539678 3539679 rs74048683 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 612 chr1 3539785 3539786 rs12073618 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4643.000000,365.000000, 0.927117,0.072883, maf-5-some-pop,maf-5-all-pops 612 chr1 3539979 3539980 rs116362344 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop,maf-5-all-pops 612 chr1 3540023 3540024 rs12757620 0 + T T G/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP, 2 G,T, 1878.000000,3130.000000, 0.375000,0.625000, maf-5-some-pop,maf-5-all-pops 612 chr1 3540145 3540146 rs41315300 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,G, 3914.000000,1094.000000, 0.781550,0.218450, maf-5-some-pop,maf-5-all-pops 612 chr1 3540151 3540152 rs34128889 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,C, 3076.000000,1932.000000, 0.614217,0.385783, maf-5-some-pop,maf-5-all-pops 612 chr1 3540200 3540201 rs149535648 0 + G G -/G genomic deletion unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP, 2 -,G, 54.000000,4954.000000, 0.010783,0.989217, 612 chr1 3540373 3540374 rs4648537 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3489.000000,1519.000000, 0.696685,0.303315, maf-5-some-pop,maf-5-all-pops 612 chr1 3540590 3540591 rs116768681 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 612 chr1 3541039 3541040 rs10909991 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 412.000000,4596.000000, 0.082268,0.917732, maf-5-some-pop,maf-5-all-pops 612 chr1 3541068 3541069 rs141983279 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 71.000000,4937.000000, 0.014177,0.985823, 612 chr1 3541355 3541356 rs76777395 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 612 chr1 3541722 3541723 rs61454555 0 + C C C/T genomic single unknown 0 0 coding-synon,intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 612 chr1 3542185 3542186 rs139992228 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 612 chr1 3542311 3542312 rs200029021 0 + T T G/T genomic single by-cluster,by-frequency 0.108387 0.206024 intron,missense exact 1 NonIntegerChromCount 3 CLINSEQ_SNP,EXOME_CHIP,ILLUMINA, 2 G,T, 38.869999,637.130005, 0.057500,0.942500, maf-5-some-pop,maf-5-all-pops 612 chr1 3542968 3542969 rs16823920 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 4588.000000,420.000000, 0.916134,0.083866, maf-5-some-pop 612 chr1 3543073 3543074 rs77827871 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 A,G, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 612 chr1 3543162 3543163 rs75189684 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 612 chr1 3543492 3543493 rs4648538 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3916.000000,1092.000000, 0.781949,0.218051, maf-5-some-pop 612 chr1 3543689 3543690 rs11804428 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4585.000000,423.000000, 0.915535,0.084465, 612 chr1 3543705 3543706 rs4648540 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3916.000000,1092.000000, 0.781949,0.218051, 612 chr1 3543777 3543778 rs4648541 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2264.000000,2744.000000, 0.452077,0.547923, 612 chr1 3543887 3543897 rs149914769 0 + AAATAAAAAC AAATAAAAAC -/AAATAAAAAC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,AAATAAAAAC, 418.000000,4590.000000, 0.083467,0.916534, 612 chr1 3543950 3543951 rs16823922 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop 612 chr1 3543958 3543959 rs16823923 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,PERLEGEN,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop 612 chr1 3544186 3544187 rs113982697 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 7 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop 612 chr1 3544235 3544236 rs5772111 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 1674.000000,3334.000000, 0.334265,0.665735, 612 chr1 3544345 3544346 rs4276857 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop,maf-5-all-pops 612 chr1 3544557 3544558 rs78069363 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,maf-5-all-pops 612 chr1 3544619 3544620 rs72855483 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop,maf-5-all-pops 612 chr1 3544867 3544868 rs16823926 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4613.000000,395.000000, 0.921126,0.078874, maf-5-some-pop 612 chr1 3545450 3545451 rs74048687 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 612 chr1 3545492 3545493 rs4512587 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 C,G, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop,maf-5-all-pops 612 chr1 3545611 3545612 rs1128474 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 22 1000GENOMES,ABI,AFFY,BGI,BL,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3981.000000,1027.000000, 0.794928,0.205072, maf-5-some-pop 612 chr1 3546125 3546129 rs138757642 0 + CAAA CAAA -/CAAA genomic deletion unknown 0 0 untranslated-3 range 1 6 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CAAA, 1068.000000,3940.000000, 0.213259,0.786741, 612 chr1 3546218 3546219 rs28712325 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 419.000000,4589.000000, 0.083666,0.916334, 612 chr1 3546428 3546429 rs144580928 0 - C C C/G genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 612 chr1 3546999 3546999 rs144795955 0 + - - -/A genomic insertion unknown 0 0 intron,near-gene-3 between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 4495.000000,513.000000, 0.897564,0.102436, 612 chr1 3547028 3547029 rs71634350 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 11 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3980.000000,1028.000000, 0.794728,0.205272, maf-5-some-pop,maf-5-all-pops 612 chr1 3547036 3547037 rs34946124 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 11 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 C,G, 1028.000000,3980.000000, 0.205272,0.794728, maf-5-some-pop,maf-5-all-pops 612 chr1 3547051 3547052 rs75430370 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4613.000000,395.000000, 0.921126,0.078874, maf-5-some-pop 612 chr1 3547768 3547769 rs12079436 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 8 1000GENOMES,BUSHMAN,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,G, 4584.000000,424.000000, 0.915335,0.084665, maf-5-some-pop,maf-5-all-pops 612 chr1 3548049 3548050 rs76211155 0 + G G A/G genomic single unknown 0 0 near-gene-3,missense exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop 612 chr1 3548197 3548198 rs16823940 0 + C C C/T genomic single unknown 0 0 near-gene-3,missense exact 1 7 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop 612 chr1 3548831 3548832 rs2760320 0 - G G C/G genomic single unknown 0 0 intron,missense exact 1 15 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 612 chr1 3548961 3548961 rs150544518 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,T, 4952.000000,56.000000, 0.988818,0.011182, 612 chr1 3549029 3549030 rs10909993 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,G, 403.000000,4605.000000, 0.080471,0.919529, maf-5-some-pop,maf-5-all-pops 612 chr1 3549093 3549094 rs562833923 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,C, 424.000000,4584.000000, 0.084665,0.915335, 612 chr1 3549196 3549197 rs10909994 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 424.000000,4584.000000, 0.084665,0.915335, maf-5-some-pop 612 chr1 3549275 3549276 rs115954327 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 612 chr1 3549578 3549579 rs114027090 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 612 chr1 3549998 3549999 rs77612789 0 + C C C/G genomic single unknown 0 0 coding-synon exact 1 3 1000GENOMES,NHLBI-ESP,SEATTLESEQ, 2 C,G, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop 612 chr1 3550601 3550606 rs200535465 0 + GTGGC GTGGC -/GTGGC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GTGGC, 72.000000,4936.000000, 0.014377,0.985623, 612 chr1 3550689 3550690 rs72855490 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 4091.000000,917.000000, 0.816893,0.183107, maf-5-some-pop 612 chr1 3551307 3551308 rs12085065 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,C, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 612 chr1 3551660 3551661 rs79481270 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 612 chr1 3551897 3551898 rs28446481 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,TISHKOFF, 2 A,C, 383.000000,4625.000000, 0.076478,0.923522, maf-5-some-pop 612 chr1 3551900 3551901 rs76802820 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop 612 chr1 3551904 3551905 rs28503229 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,TISHKOFF, 2 A,G, 4584.000000,424.000000, 0.915335,0.084665, maf-5-some-pop 612 chr1 3552828 3552829 rs113800789 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 612 chr1 3553025 3553026 rs111910303 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,G, 4788.000000,220.000000, 0.956070,0.043930, maf-5-some-pop,maf-5-all-pops 612 chr1 3553354 3553355 rs74369606 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 612 chr1 3553827 3553828 rs12078530 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop,maf-5-all-pops 612 chr1 3553854 3553855 rs12078536 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 4685.000000,323.000000, 0.935503,0.064497, maf-5-some-pop,maf-5-all-pops 612 chr1 3553993 3553993 rs141791653 0 + - - -/C genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,C, 3975.000000,1033.000000, 0.793730,0.206270, 612 chr1 3554234 3554235 rs10909996 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4682.000000,326.000000, 0.934904,0.065096, maf-5-some-pop,maf-5-all-pops 612 chr1 3554380 3554381 rs138851887 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 612 chr1 3554397 3554398 rs10909997 0 + A A A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop,maf-5-all-pops 612 chr1 3554651 3554652 rs75863907 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop,maf-5-all-pops 612 chr1 3554767 3554768 rs58651937 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 612 chr1 3554988 3554989 rs111433926 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 612 chr1 3555090 3555091 rs10909999 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 612 chr1 3555461 3555462 rs78047291 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 612 chr1 3555469 3555470 rs57595901 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4810.000000,198.000000, 0.960463,0.039537, maf-5-some-pop,maf-5-all-pops 612 chr1 3555541 3555542 rs75167783 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 612 chr1 3555593 3555596 rs141003288 0 + TGT TGT -/TGT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,WARNICH_LAB, 2 -,TGT, 202.000000,4806.000000, 0.040335,0.959665, 612 chr1 3555671 3555672 rs12038064 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4025.000000,983.000000, 0.803714,0.196286, maf-5-some-pop,maf-5-all-pops 612 chr1 3556066 3556067 rs12077454 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 G,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 612 chr1 3556097 3556098 rs114714764 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 612 chr1 3556315 3556316 rs149788200 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 144.000000,4864.000000, 0.028754,0.971246, 612 chr1 3556444 3556445 rs114814922 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 612 chr1 3556854 3556855 rs77421722 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4020.000000,988.000000, 0.802716,0.197284, maf-5-some-pop,maf-5-all-pops 612 chr1 3556963 3556964 rs114105634 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop,maf-5-all-pops 612 chr1 3557073 3557074 rs113943602 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 212.000000,4796.000000, 0.042332,0.957668, 612 chr1 3557110 3557111 rs189655207 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 208.000000,4800.000000, 0.041533,0.958466, 612 chr1 3557273 3557274 rs72857306 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 612 chr1 3557297 3557298 rs113975534 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 371.000000,4637.000000, 0.074082,0.925919, maf-5-some-pop,maf-5-all-pops 612 chr1 3557686 3557687 rs116258796 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 612 chr1 3557692 3557693 rs72857308 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4679.000000,329.000000, 0.934305,0.065695, maf-5-some-pop,maf-5-all-pops 612 chr1 3557817 3557818 rs72857310 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop,maf-5-all-pops 612 chr1 3557880 3557881 rs59491949 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4679.000000,329.000000, 0.934305,0.065695, maf-5-some-pop,maf-5-all-pops 612 chr1 3557921 3557922 rs34461044 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 C,G, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop,maf-5-all-pops 612 chr1 3558061 3558062 rs113866023 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop,maf-5-all-pops 612 chr1 3558120 3558121 rs7526126 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4328.000000,680.000000, 0.864217,0.135783, maf-5-some-pop,maf-5-all-pops 612 chr1 3558130 3558131 rs7526179 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,WI_SSAHASNP, 2 C,T, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop,maf-5-all-pops 612 chr1 3558173 3558173 rs145587365 0 + - - -/A genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,EVA-GONL,LUNTER,TISHKOFF, 2 -,A, 4685.000000,323.000000, 0.935503,0.064497, 612 chr1 3558194 3558195 rs7517179 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop,maf-5-all-pops 612 chr1 3558227 3558228 rs7528494 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop 612 chr1 3558261 3558262 rs7519550 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 A,G, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop 612 chr1 3558325 3558329 rs568813910 0 + AAAA AAAA -/AAAA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AAAA, 126.000000,4882.000000, 0.025160,0.974840, 612 chr1 3558332 3558333 rs59201848 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, 612 chr1 3558563 3558564 rs72857313 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 612 chr1 3558829 3558830 rs77779093 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 612 chr1 3558956 3558957 rs114041865 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 612 chr1 3559029 3559030 rs113727502 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4567.000000,441.000000, 0.911941,0.088059, maf-5-some-pop,maf-5-all-pops 612 chr1 3559301 3559302 rs35743795 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,ABI,HGSV,PJP, 2 -,A, 2803.000000,2205.000000, 0.559704,0.440296, 612 chr1 3559481 3559482 rs3765689 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 4610.000000,398.000000, 0.920527,0.079473, maf-5-some-pop 612 chr1 3559559 3559560 rs61489571 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop,maf-5-all-pops 612 chr1 3559900 3559901 rs78348416 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop,maf-5-all-pops 612 chr1 3559929 3559930 rs79572785 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 612 chr1 3560022 3560023 rs77302873 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 612 chr1 3560023 3560024 rs72857315 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, maf-5-some-pop,maf-5-all-pops 612 chr1 3560128 3560129 rs117909042 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4610.000000,398.000000, 0.920527,0.079473, maf-5-some-pop,maf-5-all-pops 612 chr1 3560140 3560141 rs554760400 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4611.000000,397.000000, 0.920727,0.079273, 612 chr1 3560596 3560597 rs554032631 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 1431.000000,3577.000000, 0.285743,0.714257, 612 chr1 3560599 3560600 rs576477215 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 1431.000000,3577.000000, 0.285743,0.714257, 612 chr1 3560647 3560648 rs545761385 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 670.000000,4338.000000, 0.133786,0.866214, 612 chr1 3560650 3560651 rs562477884 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 670.000000,4338.000000, 0.133786,0.866214, 612 chr1 3560855 3560856 rs576102796 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4893.000000,115.000000, 0.977037,0.022963, 612 chr1 3560906 3560907 rs541534042 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, 612 chr1 3560957 3560958 rs186570197 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4941.000000,67.000000, 0.986621,0.013379, 612 chr1 3560973 3560974 rs60777787 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB, 2 A,G, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop,maf-5-all-pops 612 chr1 3560982 3560983 rs569125990 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4326.000000,682.000000, 0.863818,0.136182, 612 chr1 3560993 3560994 rs140490693 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 612 chr1 3560997 3560998 rs6686644 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,HGSV,JMKIDD_LAB, 2 A,G, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop,maf-5-all-pops 612 chr1 3561007 3561008 rs12408890 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2419.000000,2589.000000, 0.483027,0.516973, maf-5-some-pop,maf-5-all-pops 612 chr1 3561257 3561258 rs10910000 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 612 chr1 3561528 3561529 rs114491188 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 612 chr1 3561919 3561920 rs12046309 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP, 2 C,T, 1410.000000,3598.000000, 0.281550,0.718450, 612 chr1 3561944 3561945 rs12046328 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 1123.000000,3885.000000, 0.224241,0.775759, 612 chr1 3561995 3561996 rs12730278 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 4154.000000,854.000000, 0.829473,0.170527, 612 chr1 3562955 3562956 rs74224224 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 397.000000,4611.000000, 0.079273,0.920727, maf-5-some-pop 612 chr1 3563427 3563428 rs76161888 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4539.000000,469.000000, 0.906350,0.093650, maf-5-some-pop,maf-5-all-pops 612 chr1 3563487 3563488 rs76982295 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 612 chr1 3563512 3563513 rs34514629 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 2579.000000,2429.000000, 0.514976,0.485024, 612 chr1 3563513 3563514 rs12087237 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop,maf-5-all-pops 612 chr1 3563603 3563604 rs114901913 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 612 chr1 3564230 3564231 rs12086552 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4180.000000,828.000000, 0.834665,0.165335, maf-5-some-pop 612 chr1 3564817 3564818 rs3765690 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,T, 4334.000000,674.000000, 0.865415,0.134585, maf-5-some-pop 612 chr1 3565815 3565816 rs118080244 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,C, 118.000000,4890.000000, 0.023562,0.976438, 612 chr1 3566074 3566075 rs116665793 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 612 chr1 3566278 3566279 rs7537171 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,maf-5-all-pops 612 chr1 3566285 3566286 rs56354975 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA,TISHKOFF, 2 G,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 612 chr1 3566432 3566433 rs1004649 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,EVA-GONL,GMI,SSMP,TSC-CSHL,YUSUKE, 2 G,T, 398.000000,4610.000000, 0.079473,0.920527, maf-5-some-pop,maf-5-all-pops 612 chr1 3566625 3566633 rs145464993 0 + GCAGGCTG GCAGGCTG -/GCAGGCTG genomic deletion unknown 0 0 untranslated-5 range 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,PJP, 2 -,GCAGGCTG, 1874.000000,3134.000000, 0.374201,0.625799, 612 chr1 3566628 3566629 rs561941921 0 + G G C/G genomic single unknown 0 0 untranslated-5 exact 1 1 1000GENOMES, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 612 chr1 3566631 3566632 rs546989541 0 + T T C/T genomic single unknown 0 0 untranslated-5 exact 1 1 1000GENOMES, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 612 chr1 3567023 3567023 rs111748210 0 + - - -/AT genomic insertion unknown 0 0 near-gene-5 between 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER, 2 -,AT, 4323.000000,685.000000, 0.863219,0.136781, 612 chr1 3567139 3567140 rs116307511 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4884.000000,124.000000, 0.975240,0.024760, 612 chr1 3567560 3567561 rs77609057 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 612 chr1 3568262 3568263 rs151017471 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 612 chr1 3568520 3568521 rs190702241 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 127.000000,4881.000000, 0.025359,0.974641, 612 chr1 3568543 3568544 rs72857320 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop,maf-5-all-pops 612 chr1 3570672 3570673 rs115712190 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 612 chr1 3570767 3570768 rs114533509 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 612 chr1 3570882 3570883 rs6697769 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3195.000000,1813.000000, 0.637979,0.362021, maf-5-some-pop,maf-5-all-pops 612 chr1 3570936 3570937 rs76899183 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 612 chr1 3571009 3571010 rs12097483 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop 612 chr1 3571165 3571166 rs72857321 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 331.000000,4677.000000, 0.066094,0.933906, maf-5-some-pop,maf-5-all-pops 612 chr1 3571213 3571214 rs57118960 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,C, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop,maf-5-all-pops 612 chr1 3571316 3571317 rs10910001 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 832.000000,4176.000000, 0.166134,0.833866, maf-5-some-pop 612 chr1 3571754 3571755 rs60453085 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4689.000000,319.000000, 0.936302,0.063698, 612 chr1 3572208 3572209 rs12117913 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SC_SNP, 2 G,T, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 612 chr1 3572608 3572609 rs112535445 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,maf-5-all-pops 612 chr1 3572611 3572612 rs151200161 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,C, 118.000000,4890.000000, 0.023562,0.976438, 612 chr1 3572687 3572688 rs6663736 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2260.000000,2748.000000, 0.451278,0.548722, maf-5-some-pop,maf-5-all-pops 612 chr1 3572731 3572732 rs10752739 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 3149.000000,1859.000000, 0.628794,0.371206, 612 chr1 3572818 3572819 rs6663853 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB,TISHKOFF, 2 C,T, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 612 chr1 3572820 3572821 rs75284414 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop 612 chr1 3573699 3573700 rs7534180 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 612 chr1 3574288 3574289 rs12089203 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 G,T, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,maf-5-all-pops 612 chr1 3574318 3574319 rs79789491 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop 612 chr1 3574346 3574347 rs76626189 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, 612 chr1 3574418 3574419 rs9662739 0 + T T A/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,T, 1777.000000,3231.000000, 0.354832,0.645168, maf-5-some-pop,maf-5-all-pops 612 chr1 3574419 3574420 rs9662052 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 1779.000000,3229.000000, 0.355232,0.644768, maf-5-some-pop,maf-5-all-pops 612 chr1 3574452 3574453 rs117395896 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 612 chr1 3574498 3574499 rs118172687 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, 612 chr1 3574804 3574805 rs117634357 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop,maf-5-all-pops 612 chr1 3575104 3575105 rs5772113 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,G, 1609.000000,3399.000000, 0.321286,0.678714, 612 chr1 3575145 3575146 rs77569282 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop,maf-5-all-pops 612 chr1 3575319 3575320 rs116035842 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, 612 chr1 3575322 3575323 rs72470156 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 495.000000,4513.000000, 0.098842,0.901158, maf-5-some-pop,maf-5-all-pops 612 chr1 3575377 3575378 rs550753698 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 612 chr1 3575413 3575414 rs10910002 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3140.000000,1868.000000, 0.626997,0.373003, 612 chr1 3575548 3575549 rs534031939 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, 612 chr1 3575610 3575611 rs4648544 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2472.000000,2536.000000, 0.493610,0.506390, maf-5-some-pop,maf-5-all-pops 612 chr1 3575741 3575742 rs5772114 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 7 1000GENOMES,BILGI_BIOE,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 -,A, 3389.000000,1619.000000, 0.676717,0.323283, 612 chr1 3575928 3575929 rs10910003 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 796.000000,4212.000000, 0.158946,0.841054, maf-5-some-pop 612 chr1 3575948 3575949 rs117239257 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 612 chr1 3576169 3576170 rs72857325 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 612 chr1 3576196 3576197 rs10910004 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop,maf-5-all-pops 612 chr1 3576350 3576351 rs10797407 0 + T T A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1094.000000,3914.000000, 0.218450,0.781550, 612 chr1 3576393 3576393 rs139565835 0 + - - -/CGTCCAG genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CGTCCAG, 3914.000000,1094.000000, 0.781550,0.218450, 612 chr1 3576415 3576416 rs56666456 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 1094.000000,3914.000000, 0.218450,0.781550, 612 chr1 3576546 3576547 rs10737193 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1095.000000,3913.000000, 0.218650,0.781350, maf-5-some-pop,maf-5-all-pops 612 chr1 3576661 3576662 rs80303864 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 612 chr1 3577134 3577135 rs6690927 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,G, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop,maf-5-all-pops 612 chr1 3577254 3577255 rs76003222 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,T, 341.000000,4667.000000, 0.068091,0.931909, 612 chr1 3577320 3577321 rs4648545 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop 612 chr1 3577561 3577562 rs12117522 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3986.000000,1022.000000, 0.795927,0.204073, maf-5-some-pop,maf-5-all-pops 612 chr1 3577692 3577693 rs572271804 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 -,T, 199.000000,4809.000000, 0.039736,0.960264, 612 chr1 3577789 3577790 rs6703610 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4107.000000,901.000000, 0.820088,0.179912, maf-5-some-pop,maf-5-all-pops 612 chr1 3578359 3578360 rs6657865 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 3923.000000,1085.000000, 0.783347,0.216653, maf-5-some-pop,maf-5-all-pops 612 chr1 3578438 3578439 rs539026054 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,T, 64.000000,4944.000000, 0.012780,0.987220, 612 chr1 3578443 3578444 rs6665998 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 540.000000,4468.000000, 0.107827,0.892173, 612 chr1 3578622 3578622 rs553848635 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 3898.000000,1110.000000, 0.778355,0.221645, 612 chr1 3578743 3578744 rs116527216 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 612 chr1 3578945 3578946 rs11590111 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop,maf-5-all-pops 612 chr1 3579059 3579060 rs78648315 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,maf-5-all-pops 612 chr1 3579346 3579347 rs12402637 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1093.000000,3915.000000, 0.218251,0.781749, maf-5-some-pop,maf-5-all-pops 612 chr1 3579465 3579466 rs12118148 0 + C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3376.000000,1632.000000, 0.674121,0.325879, maf-5-some-pop,maf-5-all-pops 612 chr1 3579827 3579828 rs1885861 0 - A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 612 chr1 3580063 3580064 rs2004875 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ABI,TSC-CSHL, 2 G,T, 4948.000000,60.000000, 0.988019,0.011981, 612 chr1 3580242 3580243 rs10910005 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4017.000000,991.000000, 0.802117,0.197883, maf-5-some-pop,maf-5-all-pops 612 chr1 3580259 3580260 rs36060423 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,ABI,BUSHMAN,SSMP, 2 -,A, 1009.000000,3999.000000, 0.201478,0.798522, 612 chr1 3580262 3580263 rs6669612 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,BL,BUSHMAN,EVA-GONL,HGSV,TISHKOFF, 2 A,C, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop,maf-5-all-pops 612 chr1 3580270 3580271 rs12062999 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BGI,BUSHMAN,GMI,SC_SNP,TISHKOFF, 2 A,G, 3696.000000,1312.000000, 0.738019,0.261981, 612 chr1 3580392 3580393 rs12097936 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,SC_SNP,TISHKOFF, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 612 chr1 3580573 3580574 rs10752740 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3914.000000,1094.000000, 0.781550,0.218450, maf-5-some-pop,maf-5-all-pops 612 chr1 3580604 3580605 rs115603218 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop,maf-5-all-pops 612 chr1 3580665 3580666 rs10910006 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3991.000000,1017.000000, 0.796925,0.203075, maf-5-some-pop,maf-5-all-pops 612 chr1 3580811 3580812 rs755161 0 - C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 612 chr1 3580829 3580830 rs10797408 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3352.000000,1656.000000, 0.669329,0.330671, maf-5-some-pop,maf-5-all-pops 612 chr1 3581033 3581034 rs5772115 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,GMI,LUNTER,SSMP, 2 -,C, 340.000000,4668.000000, 0.067891,0.932109, 612 chr1 3581126 3581127 rs875233 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1751.000000,3257.000000, 0.349641,0.650359, maf-5-some-pop,maf-5-all-pops 612 chr1 3581129 3581130 rs111684188 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop,maf-5-all-pops 612 chr1 3581447 3581448 rs74507487 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 612 chr1 3581800 3581801 rs12058527 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,SC_SNP,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 612 chr1 3581862 3581863 rs74045907 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 612 chr1 3581960 3581961 rs874532 0 - G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 612 chr1 3582244 3582245 rs6679560 0 + T T G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP, 2 G,T, 4105.000000,903.000000, 0.819688,0.180312, 612 chr1 3582370 3582371 rs12755108 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 A,C, 4905.000000,103.000000, 0.979433,0.020567, 612 chr1 3582635 3582636 rs76150705 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,T, 73.000000,4935.000000, 0.014577,0.985423, 612 chr1 3583208 3583209 rs78826500 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop,maf-5-all-pops 612 chr1 3583477 3583478 rs75940686 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop 612 chr1 3583507 3583508 rs77767239 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 612 chr1 3583691 3583692 rs1885859 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 612 chr1 3583693 3583694 rs80074126 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop,maf-5-all-pops 612 chr1 3583758 3583759 rs146021182 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 612 chr1 3585130 3585131 rs74224226 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 612 chr1 3585417 3585418 rs74386189 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,EVA-GONL,SSMP, 2 C,T, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 612 chr1 3585581 3585582 rs3765694 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1520.000000,3488.000000, 0.303514,0.696486, maf-5-some-pop 612 chr1 3585603 3585604 rs151078147 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 612 chr1 3585658 3585659 rs74393281 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, 612 chr1 3585863 3585864 rs11801431 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop,maf-5-all-pops 612 chr1 3586231 3586232 rs76073395 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4537.000000,471.000000, 0.905950,0.094049, maf-5-some-pop,maf-5-all-pops 612 chr1 3586249 3586250 rs732901 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4581.000000,427.000000, 0.914736,0.085264, maf-5-some-pop 612 chr1 3586282 3586283 rs732902 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop 612 chr1 3586449 3586450 rs732903 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop 612 chr1 3586487 3586488 rs78218373 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop,maf-5-all-pops 612 chr1 3586699 3586700 rs6657895 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1530.000000,3478.000000, 0.305511,0.694489, maf-5-some-pop 612 chr1 3586809 3586810 rs11576405 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 612 chr1 3587096 3587097 rs4999519 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop 612 chr1 3587122 3587123 rs138669159 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 71.000000,4937.000000, 0.014177,0.985823, 612 chr1 3587160 3587161 rs149322468 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,JMKIDD_LAB, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 612 chr1 3587265 3587266 rs75368081 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4530.000000,478.000000, 0.904553,0.095447, maf-5-some-pop,maf-5-all-pops 612 chr1 3587299 3587300 rs117656734 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,SSMP, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 612 chr1 3587376 3587377 rs3765695 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,C, 933.000000,4075.000000, 0.186302,0.813698, maf-5-some-pop,maf-5-all-pops 612 chr1 3587537 3587538 rs12059505 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 711.000000,4297.000000, 0.141973,0.858027, maf-5-some-pop,maf-5-all-pops 612 chr1 3587545 3587546 rs3765697 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1276.000000,3732.000000, 0.254792,0.745208, maf-5-some-pop,maf-5-all-pops 612 chr1 3587557 3587558 rs3765698 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,SSMP,YUSUKE, 2 C,T, 480.000000,4528.000000, 0.095847,0.904153, maf-5-some-pop,maf-5-all-pops 612 chr1 3587639 3587640 rs3765699 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,YUSUKE, 2 A,G, 4529.000000,479.000000, 0.904353,0.095647, maf-5-some-pop,maf-5-all-pops 612 chr1 3587691 3587692 rs78507106 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4529.000000,479.000000, 0.904353,0.095647, maf-5-some-pop,maf-5-all-pops 612 chr1 3587922 3587923 rs6679210 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop 612 chr1 3588070 3588071 rs79037007 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 473.000000,4535.000000, 0.094449,0.905551, maf-5-some-pop,maf-5-all-pops 612 chr1 3588161 3588162 rs114828477 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 G,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 612 chr1 3588538 3588539 rs112223461 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 G,T, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop,maf-5-all-pops 612 chr1 3588620 3588621 rs74910150 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 612 chr1 3588900 3588901 rs3765700 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 1538.000000,3470.000000, 0.307109,0.692891, maf-5-some-pop,maf-5-all-pops 612 chr1 3588982 3588983 rs78593730 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop,maf-5-all-pops 612 chr1 3589129 3589130 rs78488894 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop,maf-5-all-pops 612 chr1 3589309 3589310 rs75990771 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop,maf-5-all-pops 612 chr1 3589552 3589553 rs77112258 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 612 chr1 3589645 3589646 rs75865900 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,G, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop,maf-5-all-pops 612 chr1 3589665 3589666 rs77741698 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BGI, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 612 chr1 3590021 3590022 rs148074394 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 612 chr1 3590252 3590253 rs74796852 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop,maf-5-all-pops 612 chr1 3590424 3590425 rs6671482 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1594.000000,3414.000000, 0.318291,0.681709, maf-5-some-pop,maf-5-all-pops 612 chr1 3591142 3591143 rs3819954 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2462.000000,2546.000000, 0.491613,0.508387, maf-5-some-pop,maf-5-all-pops 612 chr1 3591447 3591448 rs12027041 0 + G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CORNELL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1770.000000,3238.000000, 0.353435,0.646565, maf-5-some-pop,maf-5-all-pops 612 chr1 3592186 3592187 rs3765702 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2574.000000,2434.000000, 0.513978,0.486022, maf-5-some-pop,maf-5-all-pops 612 chr1 3592223 3592224 rs78695499 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, 612 chr1 3592435 3592436 rs3765703 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 2032.000000,2976.000000, 0.405751,0.594249, maf-5-some-pop,maf-5-all-pops 612 chr1 3592482 3592483 rs10910007 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4598.000000,410.000000, 0.918131,0.081869, maf-5-some-pop 612 chr1 3592517 3592518 rs72634669 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 177.000000,4831.000000, 0.035344,0.964656, 612 chr1 3592597 3592598 rs76170056 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop 612 chr1 3592806 3592807 rs114671412 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 362.000000,4646.000000, 0.072284,0.927716, maf-5-some-pop,maf-5-all-pops 612 chr1 3592962 3592963 rs115239205 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 612 chr1 3593005 3593006 rs12028205 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3178.000000,1830.000000, 0.634585,0.365415, maf-5-some-pop,maf-5-all-pops 612 chr1 3594104 3594105 rs1122723 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 2836.000000,2172.000000, 0.566294,0.433706, maf-5-some-pop,maf-5-all-pops 612 chr1 3594206 3594207 rs1122724 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,TISHKOFF,TSC-CSHL, 2 C,G, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,maf-5-all-pops 612 chr1 3594334 3594335 rs142987281 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, 612 chr1 3594640 3594641 rs12062249 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 175.000000,4833.000000, 0.034944,0.965056, 612 chr1 3594755 3594756 rs2368542 0 - A A A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 612 chr1 3595051 3595052 rs6665164 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB, 2 A,G, 4880.000000,128.000000, 0.974441,0.025559, 612 chr1 3595225 3595226 rs7554226 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 612 chr1 3595244 3595245 rs149130532 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 612 chr1 3595696 3595697 rs117122665 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 612 chr1 3595767 3595768 rs10910008 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2693.000000,2315.000000, 0.537740,0.462260, maf-5-some-pop,maf-5-all-pops 612 chr1 3595914 3595915 rs115303734 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, 612 chr1 3596093 3596097 rs201955024 0 + TCTC TCTC -/TCTC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,TCTC, 159.000000,4849.000000, 0.031749,0.968251, 612 chr1 3596186 3596187 rs12121199 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,SC_SNP,SSMP, 2 C,T, 581.000000,4427.000000, 0.116014,0.883986, 612 chr1 3596371 3596377 rs150761928 0 + TCTCTG TCTCTG -/TCTCTG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,GMI, 2 -,TCTCTG, 1522.000000,3486.000000, 0.303914,0.696086, 612 chr1 3597016 3597017 rs3765705 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 A,G, 643.000000,4365.000000, 0.128395,0.871605, maf-5-some-pop 612 chr1 3597223 3597224 rs3765706 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 766.000000,4242.000000, 0.152955,0.847045, maf-5-some-pop,maf-5-all-pops 612 chr1 3597328 3597329 rs72634672 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 612 chr1 3597690 3597691 rs3819955 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP,YUSUKE, 2 C,T, 4232.000000,776.000000, 0.845048,0.154952, maf-5-some-pop,maf-5-all-pops 612 chr1 3597829 3597830 rs3765707 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 820.000000,4188.000000, 0.163738,0.836262, maf-5-some-pop,maf-5-all-pops 612 chr1 3598168 3598169 rs12025725 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4177.000000,831.000000, 0.834065,0.165935, maf-5-some-pop 612 chr1 3598307 3598308 rs75163047 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,BGI,SSMP, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop 612 chr1 3598336 3598337 rs10910009 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4163.000000,845.000000, 0.831270,0.168730, maf-5-some-pop 612 chr1 3598416 3598417 rs1885874 0 - C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 612 chr1 3598440 3598441 rs12403618 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,SSMP, 2 A,G, 4232.000000,776.000000, 0.845048,0.154952, 612 chr1 3598484 3598485 rs112016560 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB, 2 G,T, 751.000000,4257.000000, 0.149960,0.850040, 612 chr1 3598490 3598491 rs113874189 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4257.000000,751.000000, 0.850040,0.149960, 612 chr1 3598491 3598492 rs56265633 0 + T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 667.000000,4341.000000, 0.133187,0.866813, maf-5-some-pop,maf-5-all-pops 612 chr1 3598605 3598606 rs10910010 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 11 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4075.000000,933.000000, 0.813698,0.186302, maf-5-some-pop,maf-5-all-pops 612 chr1 3598909 3598910 rs1801173 0 + C C C/T genomic single unknown 0 0 untranslated-5 exact 1 12 1000GENOMES,BL,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SNP500CANCER,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4117.000000,891.000000, 0.822085,0.177915, maf-5-some-pop,maf-5-all-pops 612 chr1 3599407 3599408 rs75902087 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 612 chr1 3599469 3599470 rs543693711 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 777.000000,4231.000000, 0.155152,0.844848, 612 chr1 3599472 3599473 rs200152559 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4231.000000,777.000000, 0.844848,0.155152, 612 chr1 3599513 3599514 rs57596460 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4165.000000,843.000000, 0.831669,0.168331, maf-5-some-pop,maf-5-all-pops 612 chr1 3599592 3599593 rs114167646 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, 612 chr1 3600418 3600419 rs3765709 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4094.000000,914.000000, 0.817492,0.182508, maf-5-some-pop,maf-5-all-pops 612 chr1 3600432 3600433 rs3765710 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,C, 4112.000000,896.000000, 0.821086,0.178914, maf-5-some-pop,maf-5-all-pops 612 chr1 3600443 3600444 rs3765711 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop,maf-5-all-pops 612 chr1 3600798 3600799 rs3765712 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1183.000000,3825.000000, 0.236222,0.763778, maf-5-some-pop,maf-5-all-pops 612 chr1 3601122 3601123 rs3765713 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2145.000000,2863.000000, 0.428315,0.571685, maf-5-some-pop,maf-5-all-pops 612 chr1 3601489 3601490 rs3753205 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,G, 904.000000,4104.000000, 0.180511,0.819489, maf-5-some-pop,maf-5-all-pops 612 chr1 3601653 3601654 rs3765714 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop 612 chr1 3601939 3601940 rs3765716 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 A,G, 900.000000,4108.000000, 0.179712,0.820288, maf-5-some-pop,maf-5-all-pops 612 chr1 3602339 3602340 rs3753206 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1444.000000,3564.000000, 0.288339,0.711661, maf-5-some-pop,maf-5-all-pops 612 chr1 3602554 3602555 rs3765717 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,SSMP,TISHKOFF,YUSUKE, 2 A,G, 865.000000,4143.000000, 0.172724,0.827276, maf-5-some-pop,maf-5-all-pops 612 chr1 3602562 3602563 rs148744953 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 612 chr1 3602629 3602630 rs142304593 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,C, 96.000000,4912.000000, 0.019169,0.980831, 612 chr1 3602743 3602744 rs74045912 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4830.000000,178.000000, 0.964457,0.035543, maf-5-some-pop,maf-5-all-pops 612 chr1 3603496 3603497 rs12064267 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 612 chr1 3603649 3603650 rs114522823 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 612 chr1 3603694 3603695 rs3765718 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,T, 4082.000000,926.000000, 0.815096,0.184904, maf-5-some-pop 612 chr1 3603733 3603734 rs75929463 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4913.000000,95.000000, 0.981030,0.018970, 612 chr1 3603890 3603891 rs3765719 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 535.000000,4473.000000, 0.106829,0.893171, maf-5-some-pop 612 chr1 3603925 3603926 rs3765720 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,G, 3133.000000,1875.000000, 0.625599,0.374401, maf-5-some-pop,maf-5-all-pops 612 chr1 3603946 3603947 rs3765721 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop,maf-5-all-pops 612 chr1 3604135 3604137 rs57765962 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,EVA-GONL,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,AT, 834.000000,4174.000000, 0.166534,0.833466, 612 chr1 3604188 3604189 rs78030280 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4505.000000,503.000000, 0.899561,0.100439, maf-5-some-pop 612 chr1 3604811 3604812 rs12562573 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1307.000000,3701.000000, 0.260982,0.739018, maf-5-some-pop 612 chr1 3605507 3605508 rs78353993 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop,maf-5-all-pops 612 chr1 3605583 3605584 rs76416414 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 612 chr1 3605586 3605587 rs1885870 0 - G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 612 chr1 3606440 3606441 rs3765724 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 1677.000000,3331.000000, 0.334864,0.665136, maf-5-some-pop,maf-5-all-pops 612 chr1 3606455 3606456 rs145389759 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 G,T, 4950.000000,58.000000, 0.988419,0.011582, 612 chr1 3606480 3606481 rs78360892 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 612 chr1 3606549 3606550 rs3765725 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1658.000000,3350.000000, 0.331070,0.668930, maf-5-some-pop,maf-5-all-pops 612 chr1 3606625 3606626 rs3765727 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP,YUSUKE, 2 A,G, 1177.000000,3831.000000, 0.235024,0.764976, maf-5-some-pop,maf-5-all-pops 612 chr1 3606641 3606642 rs78495330 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BGI,EVA-GONL,SSMP, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, 612 chr1 3606849 3606850 rs3765728 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3026.000000,1982.000000, 0.604233,0.395767, maf-5-some-pop,maf-5-all-pops 612 chr1 3607037 3607038 rs60033255 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 612 chr1 3607159 3607160 rs12121865 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BL,EVA-GONL,ILLUMINA,SC_SNP, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, 612 chr1 3607354 3607355 rs3765729 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 4 1000GENOMES,GMI,SSMP,YUSUKE, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 612 chr1 3607519 3607520 rs3765730 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1186.000000,3822.000000, 0.236821,0.763179, maf-5-some-pop 612 chr1 3607531 3607532 rs12122732 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 490.000000,4518.000000, 0.097843,0.902156, maf-5-some-pop,maf-5-all-pops 612 chr1 3608226 3608227 rs34868661 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3711.000000,1297.000000, 0.741014,0.258986, maf-5-some-pop,maf-5-all-pops 612 chr1 3608280 3608281 rs12126706 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3887.000000,1121.000000, 0.776158,0.223842, maf-5-some-pop,maf-5-all-pops 612 chr1 3608553 3608557 rs201305176 0 + TGTG TGTG -/TGTG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TGTG, 122.000000,4886.000000, 0.024361,0.975639, 612 chr1 3608587 3608588 rs140282665 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 612 chr1 3608593 3608594 rs751035 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,HGSV,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop 612 chr1 3608838 3608839 rs375939129 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 62.000000,4946.000000, 0.012380,0.987620, 612 chr1 3609476 3609477 rs80350526 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,SSMP, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop,maf-5-all-pops 612 chr1 3609653 3609653 rs201851670 0 + - - -/CAGGGCCCAGAGC genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,CAGGGCCCAGAGC, 4899.000000,109.000000, 0.978235,0.021765, 612 chr1 3609822 3609823 rs115030036 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 612 chr1 3609940 3609941 rs139672539 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, 612 chr1 3610067 3610068 rs114203426 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 612 chr1 3610298 3610299 rs34095686 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,C, 1026.000000,3982.000000, 0.204872,0.795128, 612 chr1 3610311 3610312 rs36150902 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,BL,EVA-GONL,SSMP, 2 C,T, 594.000000,4414.000000, 0.118610,0.881390, 612 chr1 3610330 3610331 rs71503063 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSMP, 2 C,G, 3590.000000,1418.000000, 0.716853,0.283147, 612 chr1 3610333 3610334 rs34612797 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSMP, 2 A,C, 3590.000000,1418.000000, 0.716853,0.283147, 612 chr1 3610403 3610404 rs61762234 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 A,C, 2303.000000,2705.000000, 0.459864,0.540136, 612 chr1 3610579 3610580 rs71634356 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 A,C, 3433.000000,1575.000000, 0.685503,0.314497, 612 chr1 3610601 3610602 rs71634357 0 + C C C/T genomic single by-cluster,by-frequency 0.5 0 intron exact 1 3 ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 C,T, 5.000000,5.000000, 0.500000,0.500000, 612 chr1 3610848 3610849 rs78670682 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,ENSEMBL,GMI,SSMP, 2 C,T, 2164.000000,2844.000000, 0.432109,0.567891, 612 chr1 3610999 3611000 rs35552997 0 + G G C/G genomic single by-cluster,by-frequency 0.492188 0.06201 intron exact 1 4 ABI,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI, 2 C,G, 9.000000,7.000000, 0.562500,0.437500, 612 chr1 3611002 3611003 rs67571009 0 + A A A/C genomic single by-cluster,by-frequency 0.5 0 intron exact 1 3 ENSEMBL,HUMANGENOME_JCVI,SSMP, 2 A,C, 8.000000,8.000000, 0.500000,0.500000, 612 chr1 3611142 3611143 rs67930876 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HUMANGENOME_JCVI,SSMP, 2 A,C, 3170.000000,1838.000000, 0.632987,0.367013, 612 chr1 3611282 3611283 rs149255971 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BL,SSMP, 2 A,C, 3329.000000,1679.000000, 0.664736,0.335264, 612 chr1 3611317 3611318 rs112486614 0 + A A A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 A,C, 2492.000000,2516.000000, 0.497604,0.502396, 612 chr1 3611420 3611421 rs12738417 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,SSAHASNP,SSMP, 2 C,G, 1765.000000,3243.000000, 0.352436,0.647564, 612 chr1 3611596 3611597 rs10910012 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1341.000000,3667.000000, 0.267772,0.732228, maf-5-some-pop,maf-5-all-pops 612 chr1 3611652 3611653 rs76412586 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 483.000000,4525.000000, 0.096446,0.903554, maf-5-some-pop,maf-5-all-pops 612 chr1 3611657 3611658 rs6700120 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM_SSAHASNP,TISHKOFF, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 612 chr1 3611891 3611892 rs3765731 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1119.000000,3889.000000, 0.223442,0.776558, maf-5-some-pop,maf-5-all-pops 612 chr1 3611959 3611960 rs3765732 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop,maf-5-all-pops 612 chr1 3612293 3612294 rs3765733 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop 612 chr1 3612418 3612419 rs3765734 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop 612 chr1 3612441 3612442 rs115433499 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 612 chr1 3612783 3612786 rs146302179 0 + GAA GAA -/GAA genomic deletion unknown 0 0 intron,near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,GAA, 54.000000,4954.000000, 0.010783,0.989217, 612 chr1 3613037 3613038 rs77227066 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 612 chr1 3613066 3613067 rs3819958 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 840.000000,4168.000000, 0.167732,0.832268, maf-5-some-pop,maf-5-all-pops 612 chr1 3613712 3613713 rs76941383 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BL,BUSHMAN,SSMP, 2 C,G, 736.000000,4272.000000, 0.146965,0.853035, 612 chr1 3613731 3613732 rs549426334 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 612 chr1 3613738 3613739 rs569768982 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 612 chr1 3613769 3613770 rs10910013 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4043.000000,965.000000, 0.807308,0.192692, maf-5-some-pop,maf-5-all-pops 612 chr1 3613819 3613820 rs78340412 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 640.000000,4368.000000, 0.127796,0.872204, maf-5-some-pop,maf-5-all-pops 612 chr1 3613859 3613860 rs77096286 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 612 chr1 3613862 3613863 rs75866898 0 + T T A/T genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 612 chr1 3613920 3613921 rs35837097 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3025.000000,1983.000000, 0.604034,0.395966, maf-5-some-pop,maf-5-all-pops 612 chr1 3615047 3615048 rs112805272 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 438.000000,4570.000000, 0.087460,0.912540, maf-5-some-pop,maf-5-all-pops 612 chr1 3615052 3615053 rs12033595 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4156.000000,852.000000, 0.829872,0.170128, maf-5-some-pop,maf-5-all-pops 612 chr1 3615081 3615082 rs12032247 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4159.000000,849.000000, 0.830471,0.169529, maf-5-some-pop,maf-5-all-pops 612 chr1 3615155 3615156 rs12032272 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4149.000000,859.000000, 0.828474,0.171526, maf-5-some-pop,maf-5-all-pops 612 chr1 3615253 3615254 rs112513747 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 612 chr1 3615427 3615428 rs11580811 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1229.000000,3779.000000, 0.245407,0.754593, maf-5-some-pop,maf-5-all-pops 612 chr1 3615645 3615646 rs561278452 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 65.000000,4943.000000, 0.012979,0.987021, 612 chr1 3615658 3615659 rs182167926 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4943.000000,65.000000, 0.987021,0.012979, 612 chr1 3615779 3615780 rs78413366 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 612 chr1 3616101 3616102 rs113289380 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 612 chr1 3616600 3616601 rs3765736 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3538.000000,1470.000000, 0.706470,0.293530, maf-5-some-pop,maf-5-all-pops,microattr-tpa 612 chr1 3616791 3616792 rs3765737 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3526.000000,1482.000000, 0.704073,0.295927, maf-5-some-pop,maf-5-all-pops 612 chr1 3616797 3616798 rs3765738 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1485.000000,3523.000000, 0.296526,0.703474, maf-5-some-pop,maf-5-all-pops 612 chr1 3616869 3616870 rs79493695 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 612 chr1 3616974 3616975 rs4610947 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1225.000000,3783.000000, 0.244609,0.755391, maf-5-some-pop,maf-5-all-pops 612 chr1 3617073 3617074 rs78081454 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,BGI,LUNTER,SSMP, 2 -,A, 160.000000,4848.000000, 0.031949,0.968051, 612 chr1 3617118 3617119 rs4378145 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1377.000000,3631.000000, 0.274960,0.725040, 612 chr1 3617189 3617190 rs151288057 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 612 chr1 3617608 3617609 rs114165747 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 612 chr1 3617620 3617621 rs3765739 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3517.000000,1491.000000, 0.702276,0.297724, maf-5-some-pop,maf-5-all-pops 612 chr1 3618235 3618235 rs570041706 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,EVA-GONL, 2 -,T, 4601.000000,407.000000, 0.918730,0.081270, 612 chr1 3618564 3618565 rs3819959 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1283.000000,3725.000000, 0.256190,0.743810, maf-5-some-pop,maf-5-all-pops 612 chr1 3618713 3618714 rs3765740 0 + T T G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 2258.000000,2750.000000, 0.450879,0.549121, maf-5-some-pop,maf-5-all-pops 612 chr1 3618782 3618783 rs3765741 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3701.000000,1307.000000, 0.739018,0.260982, maf-5-some-pop 612 chr1 3618825 3618826 rs3765742 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1252.000000,3756.000000, 0.250000,0.750000, maf-5-some-pop,maf-5-all-pops 612 chr1 3619030 3619037 rs560852733 0 + CCCCAGC CCCCAGC -/CCCCAGC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CCCCAGC, 171.000000,4837.000000, 0.034145,0.965855, 612 chr1 3619108 3619109 rs3765743 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1801.000000,3207.000000, 0.359625,0.640375, maf-5-some-pop,maf-5-all-pops 612 chr1 3619186 3619187 rs111829113 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 612 chr1 3619430 3619431 rs114610116 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 612 chr1 3619612 3619613 rs3765745 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,SSMP,YUSUKE, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 612 chr1 3619756 3619757 rs3765746 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, 612 chr1 3619819 3619820 rs79808218 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 612 chr1 3619946 3619947 rs34881405 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1473.000000,3535.000000, 0.294129,0.705871, maf-5-some-pop,maf-5-all-pops 612 chr1 3619998 3619999 rs111388076 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, 612 chr1 3620058 3620059 rs112929951 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 612 chr1 3620161 3620162 rs74045918 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 612 chr1 3620434 3620435 rs12742969 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3650.000000,1358.000000, 0.728834,0.271166, maf-5-some-pop,maf-5-all-pops 612 chr1 3620459 3620460 rs12735439 0 + C C A/C genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1454.000000,3554.000000, 0.290335,0.709665, maf-5-some-pop,maf-5-all-pops 612 chr1 3620557 3620558 rs111648991 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,SSMP,TISHKOFF, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 612 chr1 3620692 3620693 rs75972949 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 612 chr1 3620713 3620714 rs111345277 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 612 chr1 3620912 3620913 rs115229594 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 612 chr1 3621185 3621186 rs3765747 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,YUSUKE, 2 C,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 612 chr1 3621260 3621261 rs74904021 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 612 chr1 3621322 3621323 rs115244497 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 612 chr1 3621478 3621479 rs3765749 0 + A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,T, 3675.000000,1333.000000, 0.733826,0.266174, maf-5-some-pop,maf-5-all-pops 612 chr1 3621618 3621619 rs140890768 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 612 chr1 3622072 3622073 rs115694533 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,ILLUMINA, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 612 chr1 3622183 3622184 rs3765751 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 2220.000000,2788.000000, 0.443291,0.556709, maf-5-some-pop,maf-5-all-pops 612 chr1 3622280 3622281 rs3765752 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1401.000000,3607.000000, 0.279752,0.720248, maf-5-some-pop,maf-5-all-pops 612 chr1 3622305 3622306 rs3765753 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 2785.000000,2223.000000, 0.556110,0.443890, maf-5-some-pop,maf-5-all-pops 612 chr1 3622396 3622397 rs75847200 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 612 chr1 3622476 3622477 rs74819158 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BGI,SSMP, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 612 chr1 3622560 3622561 rs56271782 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,maf-5-all-pops 612 chr1 3622635 3622636 rs12086279 0 + A A A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4177.000000,831.000000, 0.834065,0.165935, maf-5-some-pop,maf-5-all-pops 612 chr1 3622695 3622696 rs56043502 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 612 chr1 3622881 3622882 rs56124535 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,SSMP, 2 A,G, 3919.000000,1089.000000, 0.782548,0.217452, maf-5-some-pop,maf-5-all-pops 612 chr1 3622891 3622892 rs55976062 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV, 2 C,T, 1030.000000,3978.000000, 0.205671,0.794329, 612 chr1 3622892 3622893 rs56143470 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,HGSV, 2 G,T, 3978.000000,1030.000000, 0.794329,0.205671, 612 chr1 3623074 3623075 rs72470159 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 150.000000,4858.000000, 0.029952,0.970048, 612 chr1 3623130 3623131 rs116462451 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 612 chr1 3623133 3623134 rs80335368 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop,maf-5-all-pops 612 chr1 3623139 3623140 rs116578530 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 612 chr1 3623324 3623325 rs12564843 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,G, 3369.000000,1639.000000, 0.672724,0.327276, maf-5-some-pop,maf-5-all-pops 612 chr1 3623413 3623414 rs9786966 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2841.000000,2167.000000, 0.567292,0.432708, maf-5-some-pop,maf-5-all-pops 612 chr1 3623620 3623621 rs55657548 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop,maf-5-all-pops 612 chr1 3623688 3623689 rs114601113 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 612 chr1 3623865 3623866 rs72846529 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,T, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop,maf-5-all-pops 612 chr1 3623905 3623906 rs201701596 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,TISHKOFF,WARNICH_LAB, 2 -,G, 51.000000,4957.000000, 0.010184,0.989816, 612 chr1 3624870 3624871 rs140391190 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 612 chr1 3624882 3624883 rs115236310 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop,maf-5-all-pops 612 chr1 3624908 3624909 rs10910016 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 573.000000,4435.000000, 0.114417,0.885583, maf-5-some-pop,maf-5-all-pops 612 chr1 3625272 3625273 rs11806612 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 612 chr1 3625285 3625286 rs146984373 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 612 chr1 3625547 3625548 rs3765754 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1241.000000,3767.000000, 0.247804,0.752196, maf-5-some-pop,maf-5-all-pops 612 chr1 3625802 3625803 rs113343840 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB, 2 G,T, 4865.000000,143.000000, 0.971446,0.028554, 612 chr1 3625806 3625807 rs34768796 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP, 2 C,T, 4803.000000,205.000000, 0.959065,0.040934, maf-5-some-pop 612 chr1 3625852 3625853 rs78282063 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 612 chr1 3625907 3625908 rs72846536 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF, 2 C,G, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 612 chr1 3625928 3625929 rs79146552 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,SSMP, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 612 chr1 3626167 3626168 rs12130809 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 726.000000,4282.000000, 0.144968,0.855032, maf-5-some-pop,maf-5-all-pops 612 chr1 3626517 3626518 rs4582730 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3571.000000,1437.000000, 0.713059,0.286941, maf-5-some-pop,maf-5-all-pops 612 chr1 3626727 3626728 rs3753208 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 4436.000000,572.000000, 0.885783,0.114217, maf-5-some-pop,maf-5-all-pops 612 chr1 3626763 3626764 rs3753209 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,SSMP,YUSUKE, 2 A,G, 524.000000,4484.000000, 0.104633,0.895367, maf-5-some-pop,maf-5-all-pops 612 chr1 3626769 3626770 rs561614586 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4032.000000,976.000000, 0.805112,0.194888, 612 chr1 3626851 3626852 rs76619144 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 612 chr1 3626959 3626960 rs116577071 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 612 chr1 3627305 3627307 rs201364887 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,CA, 82.000000,4926.000000, 0.016374,0.983626, 612 chr1 3627401 3627402 rs9787049 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3692.000000,1316.000000, 0.737220,0.262780, maf-5-some-pop,maf-5-all-pops 612 chr1 3627420 3627420 rs201301292 0 + - - -/C genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,C, 4948.000000,60.000000, 0.988019,0.011981, 612 chr1 3627523 3627524 rs116460710 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 612 chr1 3627665 3627666 rs9786961 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1080.000000,3928.000000, 0.215655,0.784345, maf-5-some-pop,maf-5-all-pops 612 chr1 3628070 3628071 rs3819960 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3939.000000,1069.000000, 0.786542,0.213458, maf-5-some-pop,maf-5-all-pops 612 chr1 3628210 3628211 rs3819961 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 746.000000,4262.000000, 0.148962,0.851038, maf-5-some-pop,maf-5-all-pops 612 chr1 3628252 3628253 rs114448178 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 612 chr1 3628302 3628303 rs3819962 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4437.000000,571.000000, 0.885982,0.114018, maf-5-some-pop,maf-5-all-pops 612 chr1 3628340 3628341 rs3819963 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4484.000000,524.000000, 0.895367,0.104633, maf-5-some-pop,maf-5-all-pops 612 chr1 3628409 3628410 rs3819965 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,YUSUKE, 2 A,G, 3825.000000,1183.000000, 0.763778,0.236222, 612 chr1 3628449 3628451 rs74455032 0 + AT AT -/AT genomic deletion unknown 0 0 intron range 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,AT, 501.000000,4507.000000, 0.100040,0.899960, 612 chr1 3628548 3628549 rs116990052 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, 612 chr1 3628662 3628663 rs6424089 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2889.000000,2119.000000, 0.576877,0.423123, maf-5-some-pop,maf-5-all-pops 612 chr1 3628676 3628677 rs6424090 0 + A A A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1607.000000,3401.000000, 0.320887,0.679113, maf-5-some-pop 612 chr1 3628931 3628932 rs11808081 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA-UK,TISHKOFF, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 612 chr1 3628932 3628933 rs111372411 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 612 chr1 3629130 3629131 rs116763661 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,T, 82.000000,4926.000000, 0.016374,0.983626, 612 chr1 3629271 3629272 rs61568045 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4353.000000,655.000000, 0.869209,0.130791, maf-5-some-pop,maf-5-all-pops 612 chr1 3629493 3629500 rs139040805 0 + CCCCTGC CCCCTGC -/CCCCTGC genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CCCCTGC, 1072.000000,3936.000000, 0.214058,0.785942, 612 chr1 3629591 3629592 rs3765758 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3042.000000,1966.000000, 0.607428,0.392572, maf-5-some-pop,maf-5-all-pops 612 chr1 3629848 3629849 rs3765759 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,T, 1045.000000,3963.000000, 0.208666,0.791334, maf-5-some-pop,maf-5-all-pops 612 chr1 3629959 3629960 rs3765760 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3962.000000,1046.000000, 0.791134,0.208866, maf-5-some-pop,maf-5-all-pops 612 chr1 3630475 3630476 rs3765761 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4544.000000,464.000000, 0.907348,0.092652, maf-5-some-pop 612 chr1 3630524 3630525 rs3765762 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 612 chr1 3630628 3630629 rs74046832 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK, 2 A,G, 133.000000,4875.000000, 0.026557,0.973442, 612 chr1 3630629 3630630 rs6688320 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 612 chr1 3630684 3630685 rs76038281 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 612 chr1 3630881 3630882 rs76059942 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 612 chr1 3631114 3631115 rs3765763 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,YUSUKE, 2 A,C, 467.000000,4541.000000, 0.093251,0.906749, maf-5-some-pop 612 chr1 3631237 3631238 rs79514469 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 612 chr1 3632030 3632034 rs146065670 0 + CAGA CAGA -/CAGA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CAGA, 194.000000,4814.000000, 0.038738,0.961262, 612 chr1 3632118 3632119 rs80004076 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop 612 chr1 3632383 3632384 rs77976081 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 612 chr1 3632607 3632608 rs3753211 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 477.000000,4531.000000, 0.095248,0.904752, maf-5-some-pop 612 chr1 3632729 3632730 rs4648551 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1133.000000,3875.000000, 0.226238,0.773762, maf-5-some-pop 612 chr1 3632902 3632903 rs74046833 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 612 chr1 3633536 3633537 rs3765764 0 + G G A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 3319.000000,1689.000000, 0.662740,0.337260, maf-5-some-pop 612 chr1 3633825 3633826 rs78842275 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4931.000000,77.000000, 0.984625,0.015375, 612 chr1 3633927 3633928 rs114839520 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 612 chr1 3634458 3634459 rs3765765 0 + C C A/C genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,C, 1564.000000,3444.000000, 0.312300,0.687700, maf-5-some-pop,maf-5-all-pops 612 chr1 3634659 3634660 rs3765766 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3205.000000,1803.000000, 0.639976,0.360024, maf-5-some-pop 612 chr1 3635112 3635134 rs147565379 0 + GCAGGGGCCTAGGGGAGGGGCT GCAGGGGCCTAGGGGAGGGGCT -/GCAGGGGCCTAGGGGAGGGGCT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GCAGGGGCCTAGGGGAGGGGCT, 379.000000,4629.000000, 0.075679,0.924321, 612 chr1 3635590 3635591 rs3765768 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3268.000000,1740.000000, 0.652556,0.347444, maf-5-some-pop,maf-5-all-pops 612 chr1 3635619 3635620 rs3819968 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 3606.000000,1402.000000, 0.720048,0.279952, maf-5-some-pop,maf-5-all-pops 612 chr1 3635629 3635630 rs3765769 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 237.000000,4771.000000, 0.047324,0.952676, maf-5-some-pop 612 chr1 3635699 3635699 rs199794571 0 + - - -/G genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,G, 4925.000000,83.000000, 0.983427,0.016573, 612 chr1 3635980 3635981 rs3765770 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 226.000000,4782.000000, 0.045128,0.954872, maf-5-some-pop 612 chr1 3636265 3636266 rs74046834 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,ILLUMINA-UK, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 612 chr1 3636323 3636324 rs541243903 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,C, 439.000000,4569.000000, 0.087660,0.912340, 612 chr1 3636759 3636760 rs115384663 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 612 chr1 3637156 3637157 rs116294353 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 612 chr1 3637246 3637247 rs3765771 0 + G G C/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,G, 3034.000000,1974.000000, 0.605831,0.394169, maf-5-some-pop,maf-5-all-pops 612 chr1 3637458 3637459 rs12731705 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3613.000000,1395.000000, 0.721446,0.278554, maf-5-some-pop 612 chr1 3638566 3638567 rs61023021 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4427.000000,581.000000, 0.883986,0.116014, maf-5-some-pop 612 chr1 3638673 3638674 rs1801174 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 30 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1322.000000,3686.000000, 0.263978,0.736022, maf-5-some-pop 612 chr1 3638820 3638821 rs116167852 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,NHLBI-ESP,TISHKOFF, 2 C,G, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 612 chr1 3638833 3638834 rs12737840 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3885.000000,1123.000000, 0.775759,0.224241, maf-5-some-pop,maf-5-all-pops 612 chr1 3639257 3639258 rs61759268 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,SSMP, 2 C,G, 962.000000,4046.000000, 0.192093,0.807907, maf-5-some-pop,maf-5-all-pops 612 chr1 3639393 3639394 rs114025441 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 612 chr1 3639394 3639395 rs115039692 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 612 chr1 3639404 3639405 rs142202282 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 612 chr1 3639642 3639643 rs4648552 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3580.000000,1428.000000, 0.714856,0.285144, maf-5-some-pop,maf-5-all-pops 612 chr1 3639723 3639724 rs7537335 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 947.000000,4061.000000, 0.189097,0.810903, maf-5-some-pop,maf-5-all-pops 612 chr1 3640134 3640138 rs35939665 0 + CTGC CTGC -/CTGC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,CTGC, 3573.000000,1435.000000, 0.713458,0.286542, 612 chr1 3640687 3640687 rs35380007 0 + - - -/A genomic insertion unknown 0 0 intron between 1 9 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 4145.000000,863.000000, 0.827676,0.172324, 612 chr1 3640701 3640702 rs80249931 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 4936.000000,72.000000, 0.985623,0.014377, 612 chr1 3640778 3640779 rs115461186 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 612 chr1 3641025 3641026 rs6687491 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2013.000000,2995.000000, 0.401957,0.598043, maf-5-some-pop,maf-5-all-pops 612 chr1 3641081 3641082 rs7416277 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 612 chr1 3641122 3641123 rs6701784 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,C, 1391.000000,3617.000000, 0.277756,0.722244, maf-5-some-pop,maf-5-all-pops 612 chr1 3641585 3641586 rs192670245 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 612 chr1 3642003 3642007 rs571472774 0 + TGGA TGGA -/TGGA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TGGA, 111.000000,4897.000000, 0.022164,0.977835, 612 chr1 3642133 3642133 rs148348219 0 + - - -/ATGG genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,ATGG, 4679.000000,329.000000, 0.934305,0.065695, 612 chr1 3642152 3642153 rs34178965 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI, 2 C,G, 3040.000000,1968.000000, 0.607029,0.392971, maf-5-some-pop,maf-5-all-pops 612 chr1 3642247 3642248 rs111063491 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,SSMP, 2 A,G, 1907.000000,3101.000000, 0.380791,0.619209, maf-5-some-pop,maf-5-all-pops 612 chr1 3642311 3642311 rs368804380 0 + - - -/TGGA/TGGATGGA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 3 -,TGGA,TGGATGGA, 2402.000000,15.000000,2591.000000, 0.479633,0.002995,0.517372, 612 chr1 3642669 3642673 rs148748031 0 + TGGA TGGA -/TGGA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,TGGA, 3029.000000,1979.000000, 0.604832,0.395168, 612 chr1 3642852 3642856 rs138461490 0 + TGGA TGGA -/TGGA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,TGGA, 1544.000000,3464.000000, 0.308307,0.691693, 612 chr1 3642920 3642921 rs141968167 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 66.000000,4942.000000, 0.013179,0.986821, 612 chr1 3642959 3642959 rs145686205 0 + - - -/CGGA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,CGGA, 1841.000000,3167.000000, 0.367612,0.632388, 612 chr1 3643031 3643035 rs142535996 0 + GATT GATT -/GATT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,GATT, 922.000000,4086.000000, 0.184105,0.815895, 612 chr1 3643241 3643266 rs559564901 0 + GGGTGGGTGGATGGATGGTTGGATG GGGTGGGTGGATGGATGGTTGGATG -/GGGTGGGTGGATGGATGGTTGGATG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GGGTGGGTGGATGGATGGTTGGATG, 332.000000,4676.000000, 0.066294,0.933706, 612 chr1 3643422 3643430 rs144546084 0 + TGGATGGA TGGATGGA -/TGGATGGA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,SSMP, 2 -,TGGATGGA, 327.000000,4681.000000, 0.065296,0.934704, 612 chr1 3643680 3643681 rs61736981 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,CLINSEQ_SNP,CORNELL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, 612 chr1 3644084 3644085 rs10910017 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 1109.000000,3899.000000, 0.221446,0.778554, maf-5-some-pop 612 chr1 3644290 3644291 rs115639865 0 + C C A/C genomic single unknown 0 0 coding-synon exact 1 5 1000GENOMES,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF, 2 A,C, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop 612 chr1 3644321 3644322 rs61737710 0 + G G A/G genomic single unknown 0 0 missense exact 1 5 1000GENOMES,CORNELL,EVA-GONL,EXOME_CHIP,NHLBI-ESP, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop 612 chr1 3644463 3644464 rs76013221 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 612 chr1 3644659 3644660 rs115818333 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 612 chr1 3644714 3644715 rs12046074 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 12 1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,CORNELL,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4615.000000,393.000000, 0.921526,0.078474, maf-5-some-pop 612 chr1 3644753 3644754 rs12048341 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 16 1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,CORNELL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 551.000000,4457.000000, 0.110024,0.889976, maf-5-some-pop 612 chr1 3644857 3644858 rs2236365 0 - G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 612 chr1 3644876 3644877 rs116802335 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4914.000000,94.000000, 0.981230,0.018770, 612 chr1 3645051 3645052 rs12095248 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3425.000000,1583.000000, 0.683906,0.316094, maf-5-some-pop,maf-5-all-pops 612 chr1 3645182 3645183 rs114793815 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 612 chr1 3645207 3645208 rs79372369 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4724.000000,284.000000, 0.943291,0.056709, maf-5-some-pop 612 chr1 3645495 3645496 rs115496227 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, maf-5-some-pop,maf-5-all-pops 612 chr1 3645556 3645558 rs145086412 0 + AG AG -/AG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,AG, 604.000000,4404.000000, 0.120607,0.879393, 612 chr1 3645558 3645558 rs563633429 0 + - - -/AGAGAG genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AGAGAG, 3023.000000,1985.000000, 0.603634,0.396366, 612 chr1 3645737 3645740 rs140714850 0 + AAG AAG -/AAG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,AAG, 122.000000,4886.000000, 0.024361,0.975639, 612 chr1 3645843 3645844 rs2096224 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 2703.000000,2305.000000, 0.539736,0.460264, maf-5-some-pop,maf-5-all-pops 612 chr1 3645988 3645989 rs61736049 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,CORNELL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop 612 chr1 3646136 3646137 rs11589885 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3017.000000,1991.000000, 0.602436,0.397564, maf-5-some-pop,maf-5-all-pops 612 chr1 3646517 3646518 rs79198967 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 612 chr1 3647052 3647053 rs74046868 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,G, 75.000000,4933.000000, 0.014976,0.985024, 612 chr1 3647143 3647144 rs112742364 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, 612 chr1 3647282 3647283 rs76061588 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 612 chr1 3647283 3647284 rs117868534 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop,maf-5-all-pops 612 chr1 3647418 3647419 rs41301973 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,G, 542.000000,4466.000000, 0.108227,0.891773, maf-5-some-pop,maf-5-all-pops 612 chr1 3647711 3647712 rs60679866 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,PJP,SSMP, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, 612 chr1 3647824 3647825 rs78831753 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 612 chr1 3647831 3647832 rs80066543 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 612 chr1 3647876 3647877 rs7517037 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 667.000000,4341.000000, 0.133187,0.866813, maf-5-some-pop 612 chr1 3647943 3647944 rs12569205 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop,maf-5-all-pops 612 chr1 3648253 3648254 rs34661835 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,PJP, 2 A,G, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop 612 chr1 3648267 3648268 rs6664760 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 680.000000,4328.000000, 0.135783,0.864217, maf-5-some-pop 612 chr1 3648827 3648828 rs76564960 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 612 chr1 3649036 3649037 rs112711404 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4948.000000,60.000000, 0.988019,0.011981, 612 chr1 3649232 3649233 rs116313323 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 122.000000,4886.000000, 0.024361,0.975639, 612 chr1 3649297 3649298 rs115668288 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop 612 chr1 3649402 3649403 rs61735051 0 + G G A/G genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 10 1000GENOMES,BGI,CLINSEQ_SNP,CORNELL,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop 612 chr1 3649420 3649421 rs116174056 0 + T T C/T genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 6 1000GENOMES,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop 612 chr1 3649561 3649562 rs9662633 0 + G G A/G genomic single unknown 0 0 coding-synon,untranslated-3 exact 1 15 1000GENOMES,BGI,BUSHMAN,CANCER-GENOME,CORNELL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 540.000000,4468.000000, 0.107827,0.892173, maf-5-some-pop,microattr-tpa 612 chr1 3649793 3649794 rs9659687 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4320.000000,688.000000, 0.862620,0.137380, maf-5-some-pop 612 chr1 3649804 3649805 rs9659688 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4320.000000,688.000000, 0.862620,0.137380, maf-5-some-pop 612 chr1 3650315 3650316 rs79726755 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 4 1000GENOMES,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 612 chr1 3650838 3650839 rs77595011 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 145.000000,4863.000000, 0.028954,0.971046, maf-5-some-pop,maf-5-all-pops 612 chr1 3650886 3650887 rs116486945 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 612 chr1 3651030 3651031 rs12562437 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4726.000000,282.000000, 0.943690,0.056310, maf-5-some-pop,microattr-tpa 612 chr1 3651125 3651126 rs1181868 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3003.000000,2005.000000, 0.599641,0.400359, maf-5-some-pop,maf-5-all-pops 612 chr1 3651408 3651409 rs10910018 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 8 1000GENOMES,BGI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop,microattr-tpa 612 chr1 3651414 3651416 rs141822565 0 + AG AG -/AG genomic deletion unknown 0 0 untranslated-3 range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,AG, 157.000000,4851.000000, 0.031350,0.968650, 612 chr1 3651939 3651940 rs115978793 0 + C C C/T genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 612 chr1 3652046 3652047 rs76577680 0 + G G C/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 1 1000GENOMES, 2 C,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 612 chr1 3652383 3652384 rs116806114 0 + G G A/G genomic single unknown 0 0 near-gene-3,ncRNA,untranslated-3 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop,maf-5-all-pops 612 chr1 3652468 3652469 rs116114852 0 + G G A/G genomic single unknown 0 0 near-gene-3,ncRNA,untranslated-3 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 138.000000,4870.000000, 0.027556,0.972444, maf-5-some-pop,maf-5-all-pops 612 chr1 3652537 3652538 rs80098330 0 + C C C/T genomic single unknown 0 0 near-gene-3,ncRNA,untranslated-3 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 612 chr1 3652616 3652617 rs1047928 0 - G G C/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 12 1000GENOMES,AFFY,CGAP-GAI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,LEE,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 612 chr1 3652817 3652818 rs61759293 0 + G G A/G genomic single unknown 0 0 intron,near-gene-3,ncRNA exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1052.000000,3956.000000, 0.210064,0.789936, maf-5-some-pop 612 chr1 3652821 3652822 rs9800 0 - C C C/G genomic single unknown 0 0 intron,near-gene-3,ncRNA exact 1 20 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KWOK,LEE,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 612 chr1 3652878 3652879 rs76593173 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3,ncRNA exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 612 chr1 3653000 3653001 rs6661768 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3,ncRNA exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,TISHKOFF, 2 C,G, 97.000000,4911.000000, 0.019369,0.980631, 612 chr1 3654594 3654595 rs7514979 0 + C C C/T genomic single unknown 0 0 intron,ncRNA exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop 612 chr1 3654746 3654747 rs7515164 0 + C C A/C genomic single unknown 0 0 intron,ncRNA exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 861.000000,4147.000000, 0.171925,0.828075, maf-5-some-pop 612 chr1 3655140 3655141 rs111810228 0 + T T C/T genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 612 chr1 3655718 3655719 rs4098708 0 + G G A/G genomic single unknown 0 0 intron,ncRNA exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 279.000000,4729.000000, 0.055711,0.944289, maf-5-some-pop,maf-5-all-pops 612 chr1 3656069 3656070 rs544553541 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 1 1000GENOMES, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, 612 chr1 3656508 3656509 rs57738814 0 + T T G/T genomic single unknown 0 0 intron,ncRNA exact 1 5 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB, 2 G,T, 185.000000,4823.000000, 0.036941,0.963059, 612 chr1 3657068 3657069 rs12061947 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP, 2 C,T, 4506.000000,502.000000, 0.899760,0.100240, 612 chr1 3657150 3657151 rs114178327 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop,maf-5-all-pops 612 chr1 3657307 3657308 rs76059087 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 612 chr1 3657429 3657430 rs79895458 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 162.000000,4846.000000, 0.032348,0.967652, 612 chr1 3657469 3657470 rs61339658 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4424.000000,584.000000, 0.883387,0.116613, maf-5-some-pop 612 chr1 3657758 3657759 rs12117836 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1924.000000,3084.000000, 0.384185,0.615815, maf-5-some-pop,maf-5-all-pops 612 chr1 3657782 3657783 rs55704710 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3682.000000,1326.000000, 0.735224,0.264776, maf-5-some-pop,maf-5-all-pops 612 chr1 3658236 3658237 rs10797409 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1328.000000,3680.000000, 0.265176,0.734824, maf-5-some-pop,maf-5-all-pops 612 chr1 3658769 3658770 rs12068191 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 442.000000,4566.000000, 0.088259,0.911741, maf-5-some-pop 612 chr1 3659094 3659094 rs112223100 0 + - - -/G genomic insertion unknown 0 0 intron,near-gene-3 between 1 9 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 3074.000000,1934.000000, 0.613818,0.386182, 612 chr1 3659656 3659657 rs2298222 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,ABI,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1329.000000,3679.000000, 0.265375,0.734625, maf-5-some-pop,maf-5-all-pops 612 chr1 3659741 3659742 rs2298223 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 12 1000GENOMES,BGI,CLINSEQ_SNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4672.000000,336.000000, 0.932907,0.067093, maf-5-some-pop 612 chr1 3660214 3660215 rs7531587 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,WI_SSAHASNP, 2 C,T, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop,maf-5-all-pops 612 chr1 3660340 3660341 rs10910020 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3674.000000,1334.000000, 0.733626,0.266374, maf-5-some-pop,maf-5-all-pops 612 chr1 3660481 3660484 rs144753150 0 + AAA AAA -/AAA genomic deletion unknown 0 0 intron range 1 7 1000GENOMES,BILGI_BIOE,BL,GMI,PJP,SSMP,TISHKOFF, 2 -,AAA, 2112.000000,2896.000000, 0.421725,0.578275, 612 chr1 3660657 3660658 rs113147870 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 612 chr1 3660794 3660795 rs61759295 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4427.000000,581.000000, 0.883986,0.116014, 612 chr1 3660854 3660855 rs147101404 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4219.000000,789.000000, 0.842452,0.157548, 612 chr1 3660973 3660974 rs61759297 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4571.000000,437.000000, 0.912740,0.087260, 612 chr1 3661012 3661013 rs77051568 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 336.000000,4672.000000, 0.067093,0.932907, maf-5-some-pop 612 chr1 3661027 3661046 rs563871602 0 + AGACTCCGTCAGAGGAGTG AGACTCCGTCAGAGGAGTG -/AGACTCCGTCAGAGGAGTG genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,AGACTCCGTCAGAGGAGTG, 82.000000,4926.000000, 0.016374,0.983626, 612 chr1 3661181 3661182 rs72634702 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3073.000000,1935.000000, 0.613618,0.386382, maf-5-some-pop,maf-5-all-pops 612 chr1 3661248 3661249 rs72637004 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3658.000000,1350.000000, 0.730431,0.269569, maf-5-some-pop,maf-5-all-pops 612 chr1 3661750 3661751 rs61759298 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop,maf-5-all-pops 612 chr1 3661805 3661806 rs61759299 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop,maf-5-all-pops 612 chr1 3662072 3662073 rs56358243 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 612 chr1 3662308 3662309 rs35508285 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,ILLUMINA,NHLBI-ESP, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop 612 chr1 3662408 3662409 rs35766062 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,APPLERA_GI,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop 612 chr1 3662844 3662845 rs3737589 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3070.000000,1938.000000, 0.613019,0.386981, maf-5-some-pop,maf-5-all-pops 612 chr1 3663056 3663057 rs3737590 0 + A A A/T genomic single unknown 0 0 ncRNA exact 1 12 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,T, 3667.000000,1341.000000, 0.732228,0.267772, maf-5-some-pop,maf-5-all-pops 612 chr1 3663127 3663128 rs3737591 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop,maf-5-all-pops 612 chr1 3663553 3663554 rs79803404 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 612 chr1 3663640 3663641 rs75438821 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 9 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3674.000000,1334.000000, 0.733626,0.266374, maf-5-some-pop,maf-5-all-pops 612 chr1 3663649 3663650 rs72846548 0 + C C A/C genomic single unknown 0 0 near-gene-5,ncRNA exact 1 3 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS, 2 A,C, 499.000000,4509.000000, 0.099641,0.900359, maf-5-some-pop,maf-5-all-pops 612 chr1 3663680 3663681 rs114714099 0 + C C C/T genomic single unknown 0 0 near-gene-5,ncRNA exact 1 1 1000GENOMES, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,maf-5-all-pops 612 chr1 3663699 3663700 rs116606145 0 + G G A/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 1 1000GENOMES, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 612 chr1 3663771 3663772 rs185506327 0 + C C C/G genomic single unknown 0 0 near-gene-5,ncRNA exact 1 1 1000GENOMES, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 612 chr1 3664417 3664418 rs61759300 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4628.000000,380.000000, 0.924121,0.075879, maf-5-some-pop,maf-5-all-pops 612 chr1 3664693 3664694 rs116014069 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, 612 chr1 3664945 3664946 rs12239244 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4688.000000,320.000000, 0.936102,0.063898, 612 chr1 3665139 3665140 rs113401367 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, 612 chr1 3665347 3665348 rs142035492 0 + C C -/C genomic deletion unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,LUNTER, 2 -,C, 61.000000,4947.000000, 0.012180,0.987819, 612 chr1 3666078 3666079 rs76322599 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 341.000000,4667.000000, 0.068091,0.931909, maf-5-some-pop 612 chr1 3666548 3666549 rs61355809 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4885.000000,123.000000, 0.975439,0.024561, 612 chr1 3667354 3667355 rs114813909 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 612 chr1 3667498 3667499 rs61759301 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 383.000000,4625.000000, 0.076478,0.923522, maf-5-some-pop,maf-5-all-pops 612 chr1 3668212 3668213 rs139770297 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 338.000000,4670.000000, 0.067492,0.932508, 612 chr1 3668314 3668315 rs149772029 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 612 chr1 3668416 3668417 rs185485215 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 612 chr1 3668568 3668569 rs569812636 0 + T T -/T genomic deletion unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 -,T, 96.000000,4912.000000, 0.019169,0.980831, 612 chr1 3668569 3668569 rs530565393 0 + - - -/T/TT genomic insertion unknown 0 0 near-gene-5 between 1 1 1000GENOMES, 3 -,T,TT, 4711.000000,291.000000,6.000000, 0.940695,0.058107,0.001198, 612 chr1 3668752 3668753 rs12128253 0 + A A A/C genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4223.000000,785.000000, 0.843251,0.156749, maf-5-some-pop 612 chr1 3668780 3668781 rs12123850 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3075.000000,1933.000000, 0.614018,0.385982, maf-5-some-pop,maf-5-all-pops 612 chr1 3669171 3669172 rs41315312 0 + C C C/T genomic single unknown 0 0 missense exact 1 15 1000GENOMES,BCMHGSC_JDW,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4618.000000,390.000000, 0.922125,0.077875, maf-5-some-pop 612 chr1 3669200 3669201 rs10797410 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 24 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SC_SNP,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2459.000000,2549.000000, 0.491014,0.508986, maf-5-some-pop,maf-5-all-pops 612 chr1 3669204 3669205 rs10910021 0 + C C C/G genomic single unknown 0 0 missense exact 1 23 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SC_SNP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 C,G, 3069.000000,1939.000000, 0.612819,0.387181, maf-5-some-pop,maf-5-all-pops 612 chr1 3669280 3669281 rs114328241 0 + G G A/G genomic single unknown 0 0 missense exact 1 5 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 612 chr1 3669499 3669500 rs10910022 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop 612 chr1 3669619 3669620 rs10797411 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1941.000000,3067.000000, 0.387580,0.612420, maf-5-some-pop,maf-5-all-pops 612 chr1 3669863 3669864 rs114275298 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 130.000000,4878.000000, 0.025959,0.974042, maf-5-some-pop,maf-5-all-pops 612 chr1 3669929 3669930 rs183944508 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, 613 chr1 3670652 3670656 rs149705892 0 + TGTC TGTC -/TGTC genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,WARNICH_LAB, 2 -,TGTC, 339.000000,4669.000000, 0.067692,0.932308, 613 chr1 3670690 3670691 rs75854782 0 + A A A/G genomic single unknown 0 0 missense exact 1 5 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP, 2 A,G, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop 613 chr1 3670859 3670860 rs113554610 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 613 chr1 3670945 3670946 rs74438944 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop 613 chr1 3671695 3671696 rs72846554 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop,maf-5-all-pops 613 chr1 3671775 3671776 rs80129211 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop,maf-5-all-pops 613 chr1 3672155 3672156 rs4648555 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 790.000000,4218.000000, 0.157748,0.842252, maf-5-some-pop,maf-5-all-pops 613 chr1 3672693 3672693 rs56657883 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,TISHKOFF, 2 -,A, 4905.000000,103.000000, 0.979433,0.020567, 613 chr1 3672909 3672909 rs535731871 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 4341.000000,667.000000, 0.866813,0.133187, 613 chr1 3672991 3672992 rs75920155 0 + C C A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 609.000000,4399.000000, 0.121605,0.878395, maf-5-some-pop 613 chr1 3673002 3673003 rs79053221 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop 613 chr1 3673149 3673151 rs35440871 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 9 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,AA, 791.000000,4217.000000, 0.157947,0.842053, 613 chr1 3673243 3673244 rs78306395 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 613 chr1 3673495 3673496 rs4648405 0 + T T G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1415.000000,3593.000000, 0.282548,0.717452, maf-5-some-pop,maf-5-all-pops 613 chr1 3673865 3673866 rs79273351 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop,maf-5-all-pops 613 chr1 3674004 3674005 rs55805269 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK, 2 G,T, 4697.000000,311.000000, 0.937899,0.062101, maf-5-some-pop,maf-5-all-pops 613 chr1 3674151 3674152 rs7542464 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 C,T, 2663.000000,2345.000000, 0.531749,0.468251, 613 chr1 3674304 3674305 rs148215808 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 613 chr1 3674305 3674306 rs140255365 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 856.000000,4152.000000, 0.170927,0.829073, 613 chr1 3674753 3674754 rs1181886 0 - A A A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 613 chr1 3674757 3674758 rs9424312 0 + T T A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP, 2 A,T, 1017.000000,3991.000000, 0.203075,0.796925, maf-5-some-pop,maf-5-all-pops 613 chr1 3674777 3674778 rs59291549 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 3893.000000,1115.000000, 0.777356,0.222644, 613 chr1 3674825 3674826 rs138479865 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, 613 chr1 3675001 3675002 rs6682863 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1333.000000,3675.000000, 0.266174,0.733826, 613 chr1 3675704 3675705 rs146128470 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 613 chr1 3675780 3675780 rs369459668 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BILGI_BIOE, 2 -,A, 3953.000000,1055.000000, 0.789337,0.210663, 613 chr1 3675836 3675837 rs12128570 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4132.000000,876.000000, 0.825080,0.174920, maf-5-some-pop,maf-5-all-pops 613 chr1 3675958 3675959 rs12131045 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1071.000000,3937.000000, 0.213858,0.786142, maf-5-some-pop,maf-5-all-pops 613 chr1 3676076 3676077 rs12128669 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4211.000000,797.000000, 0.840855,0.159145, maf-5-some-pop,maf-5-all-pops 613 chr1 3676867 3676868 rs76582618 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, 613 chr1 3677448 3677449 rs11805366 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 613 chr1 3677578 3677579 rs115363106 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 613 chr1 3677817 3677818 rs41311979 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,TISHKOFF, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop 613 chr1 3678127 3678128 rs78231122 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 613 chr1 3678133 3678134 rs75302785 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 613 chr1 3678220 3678221 rs1181882 0 - G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 613 chr1 3678230 3678231 rs7516756 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 4146.000000,862.000000, 0.827875,0.172125, maf-5-some-pop,maf-5-all-pops 613 chr1 3678510 3678511 rs7516968 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop,maf-5-all-pops 613 chr1 3678735 3678736 rs72637017 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 857.000000,4151.000000, 0.171126,0.828874, maf-5-some-pop,maf-5-all-pops 613 chr1 3678848 3678849 rs115255243 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 613 chr1 3678897 3678898 rs1181881 0 - A A A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 4 A,C,G,T, 2547.000000,2461.000000,2461.000000,2547.000000, 0.254293,0.245707,0.245707,0.254293, maf-5-some-pop,maf-5-all-pops 613 chr1 3678953 3678954 rs76563254 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, 613 chr1 3679145 3679146 rs4648556 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 899.000000,4109.000000, 0.179513,0.820487, maf-5-some-pop,maf-5-all-pops 613 chr1 3679202 3679203 rs75571263 0 + C C C/T genomic single unknown 0 0 missense exact 1 5 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,NHLBI-ESP, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop 613 chr1 3679306 3679307 rs4648557 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BL,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 901.000000,4107.000000, 0.179912,0.820088, maf-5-some-pop,maf-5-all-pops 613 chr1 3679460 3679461 rs4648558 0 + A A A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4121.000000,887.000000, 0.822883,0.177117, maf-5-some-pop,maf-5-all-pops 613 chr1 3679476 3679477 rs6699377 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 4115.000000,893.000000, 0.821685,0.178315, maf-5-some-pop,maf-5-all-pops 613 chr1 3679513 3679514 rs6699385 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 880.000000,4128.000000, 0.175719,0.824281, maf-5-some-pop,maf-5-all-pops 613 chr1 3679540 3679541 rs147251165 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 143.000000,4865.000000, 0.028554,0.971446, 613 chr1 3679774 3679775 rs10910024 0 + C C C/T genomic single unknown 0 0 missense exact 1 17 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 4264.000000,744.000000, 0.851438,0.148562, maf-5-some-pop 613 chr1 3679782 3679783 rs76416341 0 + T T C/T genomic single unknown 0 0 missense exact 1 7 1000GENOMES,EVA-GONL,EXOME_CHIP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, 613 chr1 3680055 3680056 rs56079032 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,EVA-GONL,HGSV,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 613 chr1 3680149 3680150 rs370577539 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 55.000000,4953.000000, 0.010982,0.989018, 613 chr1 3680332 3680333 rs75853003 0 + C C C/T genomic single unknown 0 0 missense exact 1 10 1000GENOMES,BGI,CLINSEQ_SNP,EVA-GONL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop 613 chr1 3680426 3680427 rs41306998 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 613 chr1 3680480 3680481 rs59381825 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,maf-5-all-pops 613 chr1 3680655 3680656 rs16824067 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,G, 209.000000,4799.000000, 0.041733,0.958267, maf-5-some-pop,maf-5-all-pops 613 chr1 3681062 3681063 rs6669358 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3632.000000,1376.000000, 0.725240,0.274760, maf-5-some-pop 613 chr1 3682004 3682005 rs75596937 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 613 chr1 3683083 3683085 rs374337995 0 + TC TC -/TC genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,EVA-GONL,SSIP,SSMP, 2 -,TC, 63.000000,4945.000000, 0.012580,0.987420, 613 chr1 3683348 3683349 rs16824081 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 626.000000,4382.000000, 0.125000,0.875000, maf-5-some-pop 613 chr1 3683396 3683397 rs28489121 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSAHASNP, 2 A,C, 4905.000000,103.000000, 0.979433,0.020567, 613 chr1 3683490 3683491 rs150490288 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 613 chr1 3683499 3683500 rs6694997 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 683.000000,4325.000000, 0.136382,0.863618, 613 chr1 3683913 3683914 rs2275839 0 - T T A/T genomic single unknown 0 0 missense exact 1 11 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 613 chr1 3684106 3684107 rs1181872 0 - T T A/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 613 chr1 3684616 3684617 rs76615735 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 613 chr1 3684938 3684939 rs10797412 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1024.000000,3984.000000, 0.204473,0.795527, maf-5-some-pop,maf-5-all-pops 613 chr1 3685377 3685378 rs112702192 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 G,T, 4913.000000,95.000000, 0.981030,0.018970, 613 chr1 3685770 3685771 rs78474288 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4777.000000,231.000000, 0.953874,0.046126, maf-5-some-pop 613 chr1 3685838 3685839 rs59757565 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 613 chr1 3686414 3686415 rs41315316 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SI_EXO, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop 613 chr1 3686752 3686753 rs57804846 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 613 chr1 3687385 3687387 rs36002367 0 + AG AG -/AG genomic deletion unknown 0 0 intron,near-gene-5 range 1 6 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,AG, 1360.000000,3648.000000, 0.271565,0.728435, 613 chr1 3687502 3687505 rs200840516 0 + GAG GAG -/GAG genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,GAG, 61.000000,4947.000000, 0.012180,0.987819, 613 chr1 3687888 3687889 rs76581100 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop 613 chr1 3688029 3688030 rs3737592 0 + C C C/G genomic single unknown 0 0 coding-synon,near-gene-5 exact 1 15 1000GENOMES,ABI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop 613 chr1 3688323 3688324 rs35583009 0 + T T A/T genomic single unknown 0 0 near-gene-3,near-gene-5 exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 417.000000,4591.000000, 0.083267,0.916733, maf-5-some-pop,maf-5-all-pops 613 chr1 3688826 3688827 rs150437326 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 1 1000GENOMES, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, 613 chr1 3688848 3688849 rs115228421 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4211.000000,797.000000, 0.840855,0.159145, maf-5-some-pop,maf-5-all-pops 613 chr1 3689074 3689075 rs189577189 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 184.000000,4824.000000, 0.036741,0.963259, 613 chr1 3689109 3689125 rs367810010 0 + GCCCCGCCCCCCTCTC GCCCCGCCCCCCTCTC -/GCCCCGCCCCCCTCTC genomic deletion unknown 0 0 near-gene-5 range 1 2 1000GENOMES,LUNTER, 2 -,GCCCCGCCCCCCTCTC, 1831.000000,3177.000000, 0.365615,0.634385, 613 chr1 3689851 3689852 rs34961462 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,TISHKOFF, 2 C,T, 4628.000000,380.000000, 0.924121,0.075879, maf-5-some-pop,maf-5-all-pops 613 chr1 3690396 3690397 rs76140795 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4786.000000,222.000000, 0.955671,0.044329, 613 chr1 3690805 3690806 rs112694859 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 613 chr1 3691263 3691264 rs2797432 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1513.000000,3495.000000, 0.302117,0.697883, maf-5-some-pop 613 chr1 3691489 3691490 rs6673829 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 669.000000,4339.000000, 0.133586,0.866414, maf-5-some-pop 613 chr1 3691591 3691592 rs9424296 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1001.000000,4007.000000, 0.199880,0.800120, maf-5-some-pop,maf-5-all-pops 613 chr1 3692126 3692127 rs7537868 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop,maf-5-all-pops 613 chr1 3692240 3692241 rs71634364 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop,maf-5-all-pops 613 chr1 3692749 3692750 rs7540647 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,SSMP,WI_SSAHASNP, 2 C,T, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop,maf-5-all-pops 613 chr1 3692795 3692796 rs75673976 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 613 chr1 3692798 3692799 rs111575493 0 + C C C/G genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,G, 4911.000000,97.000000, 0.980631,0.019369, 613 chr1 3692985 3692987 rs146199766 0 + CT CT -/CT genomic deletion unknown 0 0 near-gene-3 range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,CT, 171.000000,4837.000000, 0.034145,0.965855, 613 chr1 3693109 3693110 rs9424313 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1127.000000,3881.000000, 0.225040,0.774960, maf-5-some-pop 613 chr1 3693129 3693130 rs35616712 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BUSHMAN,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,C, 448.000000,4560.000000, 0.089457,0.910543, 613 chr1 3693172 3693173 rs35568319 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4560.000000,448.000000, 0.910543,0.089457, maf-5-some-pop,maf-5-all-pops 613 chr1 3693224 3693225 rs34955593 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop,maf-5-all-pops 613 chr1 3693485 3693486 rs76095402 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 622.000000,4386.000000, 0.124201,0.875799, maf-5-some-pop,maf-5-all-pops 613 chr1 3693510 3693511 rs78393723 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4562.000000,446.000000, 0.910942,0.089057, maf-5-some-pop,maf-5-all-pops 613 chr1 3693590 3693591 rs112642923 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 A,C, 4915.000000,93.000000, 0.981430,0.018570, 613 chr1 3693653 3693654 rs118114505 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop,maf-5-all-pops 613 chr1 3693673 3693674 rs71634365 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 450.000000,4558.000000, 0.089856,0.910144, maf-5-some-pop,maf-5-all-pops 613 chr1 3693729 3693730 rs11576246 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3880.000000,1128.000000, 0.774760,0.225240, maf-5-some-pop 613 chr1 3693751 3693752 rs111624354 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,G, 97.000000,4911.000000, 0.019369,0.980631, 613 chr1 3693758 3693759 rs75713165 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop 613 chr1 3693833 3693834 rs117110389 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop,maf-5-all-pops 613 chr1 3694079 3694080 rs75742653 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop 613 chr1 3694329 3694330 rs71634366 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop,maf-5-all-pops 613 chr1 3694353 3694354 rs71634367 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4560.000000,448.000000, 0.910543,0.089457, maf-5-some-pop,maf-5-all-pops 613 chr1 3694361 3694362 rs77799767 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, 613 chr1 3694437 3694438 rs71634368 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI,TISHKOFF, 2 A,C, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop,maf-5-all-pops 613 chr1 3694479 3694480 rs34137352 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 620.000000,4388.000000, 0.123802,0.876198, maf-5-some-pop,maf-5-all-pops 613 chr1 3694498 3694499 rs74049724 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 613 chr1 3694608 3694609 rs34838707 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 C,T, 4639.000000,369.000000, 0.926318,0.073682, maf-5-some-pop,maf-5-all-pops 613 chr1 3694755 3694758 rs5772125 0 + CTG CTG -/CTG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,ABI,LUNTER, 2 -,CTG, 61.000000,4947.000000, 0.012180,0.987819, 613 chr1 3694775 3694776 rs59674885 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 613 chr1 3695154 3695155 rs71634369 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop,maf-5-all-pops 613 chr1 3695304 3695305 rs71634370 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4560.000000,448.000000, 0.910543,0.089457, maf-5-some-pop,maf-5-all-pops 613 chr1 3695560 3695561 rs35938957 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop,maf-5-all-pops 613 chr1 3695582 3695583 rs80140736 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 613 chr1 3695644 3695645 rs114578581 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,maf-5-all-pops 613 chr1 3695666 3695667 rs35169286 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4639.000000,369.000000, 0.926318,0.073682, maf-5-some-pop,maf-5-all-pops 613 chr1 3695899 3695900 rs34121825 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4636.000000,372.000000, 0.925719,0.074281, maf-5-some-pop,maf-5-all-pops 613 chr1 3696054 3696055 rs10909790 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 613 chr1 3696216 3696217 rs35860660 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, maf-5-some-pop,maf-5-all-pops 613 chr1 3696355 3696356 rs12061931 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 4671.000000,337.000000, 0.932708,0.067292, maf-5-some-pop,maf-5-all-pops 613 chr1 3696535 3696536 rs3737593 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, maf-5-some-pop 613 chr1 3696638 3696639 rs16824088 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop 613 chr1 3696769 3696770 rs3737594 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF,YUSUKE, 2 C,T, 560.000000,4448.000000, 0.111821,0.888179, maf-5-some-pop,maf-5-all-pops 613 chr1 3696889 3696890 rs8379 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 27 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2673.000000,2335.000000, 0.533746,0.466254, maf-5-some-pop 613 chr1 3697034 3697035 rs17411356 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4638.000000,370.000000, 0.926118,0.073882, maf-5-some-pop 613 chr1 3697485 3697486 rs34286051 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 4445.000000,563.000000, 0.887580,0.112420, maf-5-some-pop,maf-5-all-pops 613 chr1 3697699 3697700 rs6694319 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 13 1000GENOMES,APPLERA_GI,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,TISHKOFF, 2 A,G, 337.000000,4671.000000, 0.067292,0.932708, maf-5-some-pop 613 chr1 3698016 3698017 rs12745312 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 560.000000,4448.000000, 0.111821,0.888179, maf-5-some-pop,maf-5-all-pops 613 chr1 3698223 3698224 rs17411384 0 + G G C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop 613 chr1 3698311 3698312 rs61402779 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,HGSV, 2 C,T, 193.000000,4815.000000, 0.038538,0.961462, 613 chr1 3698401 3698402 rs41315254 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4620.000000,388.000000, 0.922524,0.077476, 613 chr1 3698456 3698457 rs57413808 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop,maf-5-all-pops 613 chr1 3698527 3698528 rs2799186 0 - C C C/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 613 chr1 3698636 3698637 rs55848151 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 389.000000,4619.000000, 0.077676,0.922324, maf-5-some-pop,maf-5-all-pops 613 chr1 3698802 3698803 rs140085613 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, 613 chr1 3698815 3698817 rs113619399 0 + TT TT -/TT genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,TT, 388.000000,4620.000000, 0.077476,0.922524, 613 chr1 3698835 3698836 rs113936893 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 560.000000,4448.000000, 0.111821,0.888179, 613 chr1 3698916 3698917 rs35033791 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, 613 chr1 3698927 3698928 rs113838899 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, maf-5-some-pop,maf-5-all-pops 613 chr1 3698946 3698947 rs12122058 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,BCMHGSC_JDW,EVA-GONL,KRIBB_YJKIM,SC_SNP, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop 613 chr1 3699138 3699139 rs150073693 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,LUNTER,SSMP,WARNICH_LAB, 2 -,T, 137.000000,4871.000000, 0.027356,0.972644, 613 chr1 3699567 3699568 rs2799185 0 - G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 613 chr1 3699674 3699675 rs35550470 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,ABI,SSMP, 2 -,A, 781.000000,4227.000000, 0.155950,0.844050, 613 chr1 3699889 3699890 rs151222880 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 172.000000,4836.000000, 0.034345,0.965655, 613 chr1 3699984 3699984 rs575528149 0 + - - -/AA genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,AA, 2303.000000,2705.000000, 0.459864,0.540136, 613 chr1 3700118 3700119 rs12738904 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3498.000000,1510.000000, 0.698482,0.301518, maf-5-some-pop,maf-5-all-pops 613 chr1 3700178 3700179 rs79085335 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 613 chr1 3700429 3700430 rs36124273 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4633.000000,375.000000, 0.925120,0.074880, maf-5-some-pop 613 chr1 3700849 3700850 rs2298228 0 - C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 613 chr1 3701088 3701089 rs34545744 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 555.000000,4453.000000, 0.110823,0.889177, maf-5-some-pop,maf-5-all-pops 613 chr1 3701123 3701124 rs80020130 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop,maf-5-all-pops 613 chr1 3701163 3701164 rs34555288 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4623.000000,385.000000, 0.923123,0.076877, maf-5-some-pop,maf-5-all-pops 613 chr1 3701221 3701222 rs79696707 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 613 chr1 3701489 3701490 rs58614279 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, 613 chr1 3701579 3701580 rs57217928 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 554.000000,4454.000000, 0.110623,0.889377, maf-5-some-pop,maf-5-all-pops 613 chr1 3701794 3701795 rs116036316 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop 613 chr1 3701831 3701832 rs71634371 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 383.000000,4625.000000, 0.076478,0.923522, maf-5-some-pop,maf-5-all-pops 613 chr1 3701918 3701919 rs2298226 0 - C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 613 chr1 3702142 3702143 rs57921733 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop,maf-5-all-pops 613 chr1 3702528 3702529 rs149985684 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, 613 chr1 3702647 3702648 rs112014047 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 568.000000,4440.000000, 0.113419,0.886581, 613 chr1 3702831 3702832 rs1106265 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4528.000000,480.000000, 0.904153,0.095847, 613 chr1 3702949 3702950 rs2017435 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 572.000000,4436.000000, 0.114217,0.885783, maf-5-some-pop 613 chr1 3703333 3703334 rs7549076 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 613 chr1 3703336 3703337 rs2368537 0 - G G C/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 613 chr1 3703369 3703370 rs113681554 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,NHLBI-ESP, 2 A,G, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 613 chr1 3703697 3703698 rs41307854 0 + A A A/G genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP, 2 A,G, 4831.000000,177.000000, 0.964656,0.035344, 613 chr1 3704040 3704041 rs7527973 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4204.000000,804.000000, 0.839457,0.160543, maf-5-some-pop,maf-5-all-pops 613 chr1 3704451 3704452 rs12142183 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,PJP,SC_SNP, 2 G,T, 54.000000,4954.000000, 0.010783,0.989217, 613 chr1 3704478 3704479 rs59839873 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,maf-5-all-pops 613 chr1 3705020 3705021 rs9424282 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2523.000000,2485.000000, 0.503794,0.496206, maf-5-some-pop,maf-5-all-pops 613 chr1 3705114 3705115 rs10909792 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3891.000000,1117.000000, 0.776957,0.223043, maf-5-some-pop 613 chr1 3705210 3705211 rs113736419 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 4901.000000,107.000000, 0.978634,0.021366, 613 chr1 3705272 3705273 rs113006428 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 147.000000,4861.000000, 0.029353,0.970647, 613 chr1 3705415 3705416 rs7547679 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3479.000000,1529.000000, 0.694688,0.305312, maf-5-some-pop 613 chr1 3705550 3705551 rs9424297 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3703.000000,1305.000000, 0.739417,0.260583, maf-5-some-pop,maf-5-all-pops 613 chr1 3705732 3705733 rs116598730 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 613 chr1 3705887 3705888 rs60946587 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4810.000000,198.000000, 0.960463,0.039537, maf-5-some-pop 613 chr1 3705984 3705985 rs6692872 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 613 chr1 3706142 3706143 rs80301333 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP, 2 A,T, 135.000000,4873.000000, 0.026957,0.973043, maf-5-some-pop,maf-5-all-pops 613 chr1 3706245 3706246 rs6657908 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 335.000000,4673.000000, 0.066893,0.933107, maf-5-some-pop,maf-5-all-pops 613 chr1 3706413 3706414 rs77748969 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop,maf-5-all-pops 613 chr1 3706505 3706506 rs112694867 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, 613 chr1 3706537 3706538 rs9424284 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3503.000000,1505.000000, 0.699481,0.300519, maf-5-some-pop 613 chr1 3706558 3706559 rs72846586 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop,maf-5-all-pops 613 chr1 3706816 3706818 rs149570540 0 + CT CT -/CT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP, 2 -,CT, 440.000000,4568.000000, 0.087859,0.912141, 613 chr1 3706892 3706893 rs58717732 0 + T T A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,HGSV, 2 A,T, 171.000000,4837.000000, 0.034145,0.965855, 613 chr1 3706893 3706894 rs58882037 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,HGSV, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, 613 chr1 3706968 3706969 rs35608411 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 335.000000,4673.000000, 0.066893,0.933107, maf-5-some-pop,maf-5-all-pops 613 chr1 3707036 3707037 rs34094195 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 4565.000000,443.000000, 0.911542,0.088459, maf-5-some-pop,maf-5-all-pops 613 chr1 3707456 3707456 rs34679063 0 + - - -/C genomic insertion unknown 0 0 intron between 1 10 1000GENOMES,ABI,BGI,BILGI_BIOE,BL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 841.000000,4167.000000, 0.167931,0.832069, 613 chr1 3707591 3707592 rs75598464 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop,maf-5-all-pops 613 chr1 3707728 3707729 rs77030949 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop 613 chr1 3708168 3708169 rs61080468 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, 613 chr1 3708551 3708552 rs57257868 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,C, 4837.000000,171.000000, 0.965855,0.034145, 613 chr1 3708716 3708717 rs57161695 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 171.000000,4837.000000, 0.034145,0.965855, maf-5-some-pop 613 chr1 3708874 3708875 rs115642699 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 613 chr1 3709026 3709027 rs565337962 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 1802.000000,3206.000000, 0.359824,0.640176, 613 chr1 3709027 3709028 rs530896763 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 1802.000000,3206.000000, 0.359824,0.640176, 613 chr1 3709092 3709093 rs61759306 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4567.000000,441.000000, 0.911941,0.088059, 613 chr1 3709109 3709110 rs35230993 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 428.000000,4580.000000, 0.085463,0.914537, 613 chr1 3709411 3709412 rs12728911 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1211.000000,3797.000000, 0.241813,0.758187, maf-5-some-pop 613 chr1 3709486 3709487 rs7513053 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4222.000000,786.000000, 0.843051,0.156949, maf-5-some-pop,maf-5-all-pops 613 chr1 3710178 3710179 rs9424285 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1118.000000,3890.000000, 0.223243,0.776757, maf-5-some-pop 613 chr1 3710956 3710957 rs9424298 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3891.000000,1117.000000, 0.776957,0.223043, maf-5-some-pop 613 chr1 3711143 3711144 rs140221300 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, 613 chr1 3711192 3711193 rs12750187 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2622.000000,2386.000000, 0.523562,0.476438, 613 chr1 3711688 3711689 rs6667255 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 621.000000,4387.000000, 0.124002,0.875998, maf-5-some-pop,maf-5-all-pops 613 chr1 3713026 3713027 rs117033631 0 + G G A/G genomic single unknown 0 0 missense exact 1 5 1000GENOMES,EXOME_CHIP,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 613 chr1 3713076 3713077 rs12759775 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,NHLBI-ESP,SSAHASNP,SSMP, 2 G,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 613 chr1 3713268 3713269 rs77439315 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4794.000000,214.000000, 0.957268,0.042732, maf-5-some-pop 613 chr1 3713326 3713327 rs12071366 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3794.000000,1214.000000, 0.757588,0.242412, maf-5-some-pop,maf-5-all-pops 613 chr1 3713745 3713746 rs6424052 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4386.000000,622.000000, 0.875799,0.124201, maf-5-some-pop,maf-5-all-pops 613 chr1 3713792 3713793 rs7554244 0 + A A A/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,T, 4652.000000,356.000000, 0.928914,0.071086, maf-5-some-pop,maf-5-all-pops 613 chr1 3713972 3713973 rs200764730 0 + C C -/C genomic deletion unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,LUNTER, 2 -,C, 65.000000,4943.000000, 0.012979,0.987021, 613 chr1 3714032 3714033 rs7543006 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3796.000000,1212.000000, 0.757987,0.242013, maf-5-some-pop 613 chr1 3714245 3714245 rs147985290 0 + - - -/TAATTTTTATATTAACCGTGTTAATA genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,LUNTER, 2 -,TAATTTTTATATTAACCGTGTTAATA, 4055.000000,953.000000, 0.809704,0.190296, 613 chr1 3714407 3714407 rs561410854 0 + - - -/TTAT genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,SSIP, 2 -,TTAT, 4871.000000,137.000000, 0.972644,0.027356, 613 chr1 3714795 3714796 rs56710549 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4794.000000,214.000000, 0.957268,0.042732, 613 chr1 3715918 3715919 rs111484302 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4794.000000,214.000000, 0.957268,0.042732, 613 chr1 3715930 3715931 rs9424286 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4025.000000,983.000000, 0.803714,0.196286, 613 chr1 3715997 3715998 rs12063833 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop,maf-5-all-pops 613 chr1 3716076 3716077 rs112460330 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 102.000000,4906.000000, 0.020367,0.979633, 613 chr1 3716325 3716325 rs202011472 0 + - - -/CCCTGCACCCCCCTGCACCCCCCTGCA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CCCTGCACCCCCCTGCACCCCCCTGCA, 4829.000000,179.000000, 0.964257,0.035743, 613 chr1 3716467 3716468 rs79289503 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 613 chr1 3716736 3716737 rs9424299 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 838.000000,4170.000000, 0.167332,0.832668, maf-5-some-pop 613 chr1 3717023 3717024 rs75317541 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ENSEMBL,GMI,JMKIDD_LAB, 2 C,G, 3957.000000,1051.000000, 0.790136,0.209864, 613 chr1 3717039 3717040 rs60615207 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 569.000000,4439.000000, 0.113618,0.886382, 613 chr1 3717102 3717103 rs78316342 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,JMKIDD_LAB, 2 A,G, 455.000000,4553.000000, 0.090855,0.909145, 613 chr1 3717138 3717139 rs77743432 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 A,C, 1161.000000,3847.000000, 0.231829,0.768171, 613 chr1 3717151 3717152 rs71503071 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB, 2 C,T, 1165.000000,3843.000000, 0.232628,0.767372, 613 chr1 3717362 3717363 rs71634372 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4498.000000,510.000000, 0.898163,0.101837, maf-5-some-pop 613 chr1 3717403 3717404 rs12403561 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 972.000000,4036.000000, 0.194089,0.805911, maf-5-some-pop 613 chr1 3717942 3717943 rs58013669 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 613 chr1 3718047 3718049 rs200974133 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,AG, 134.000000,4874.000000, 0.026757,0.973243, 613 chr1 3718068 3718069 rs6703539 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3471.000000,1537.000000, 0.693091,0.306909, 613 chr1 3718069 3718070 rs60744170 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 182.000000,4826.000000, 0.036342,0.963658, 613 chr1 3718162 3718163 rs141748878 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 65.000000,4943.000000, 0.012979,0.987021, 613 chr1 3718192 3718193 rs146231620 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 613 chr1 3718243 3718244 rs12120684 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4229.000000,779.000000, 0.844449,0.155551, 613 chr1 3718401 3718402 rs112248193 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 893.000000,4115.000000, 0.178315,0.821685, 613 chr1 3718486 3718487 rs6681383 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4714.000000,294.000000, 0.941294,0.058706, 613 chr1 3718489 3718490 rs6670245 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4785.000000,223.000000, 0.955471,0.044529, 613 chr1 3718591 3718591 rs113282222 0 + - - -/GGAG genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,GGAG, 4243.000000,765.000000, 0.847244,0.152756, 613 chr1 3718863 3718864 rs6658021 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3361.000000,1647.000000, 0.671126,0.328874, maf-5-some-pop,maf-5-all-pops 613 chr1 3719027 3719028 rs57699724 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,T, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop 613 chr1 3719056 3719057 rs7535775 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3335.000000,1673.000000, 0.665935,0.334065, maf-5-some-pop,maf-5-all-pops 613 chr1 3719134 3719135 rs115646097 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 151.000000,4857.000000, 0.030152,0.969848, 613 chr1 3719620 3719621 rs114576088 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 613 chr1 3719786 3719787 rs6676575 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3456.000000,1552.000000, 0.690096,0.309904, 613 chr1 3719796 3719797 rs12404298 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 972.000000,4036.000000, 0.194089,0.805911, 613 chr1 3719889 3719890 rs6661554 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4348.000000,660.000000, 0.868211,0.131789, 613 chr1 3719980 3719981 rs12755516 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1185.000000,3823.000000, 0.236621,0.763379, 613 chr1 3720213 3720214 rs117275297 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 613 chr1 3720322 3720323 rs10909797 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2261.000000,2747.000000, 0.451478,0.548522, maf-5-some-pop 613 chr1 3720331 3720332 rs12126299 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2290.000000,2718.000000, 0.457268,0.542732, maf-5-some-pop 613 chr1 3720956 3720957 rs12239722 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4666.000000,342.000000, 0.931709,0.068291, maf-5-some-pop,maf-5-all-pops 613 chr1 3720993 3720993 rs35447451 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,ABI,BILGI_BIOE,BL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 1552.000000,3456.000000, 0.309904,0.690096, 613 chr1 3721064 3721065 rs12134180 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4113.000000,895.000000, 0.821286,0.178714, maf-5-some-pop,maf-5-all-pops 613 chr1 3721250 3721251 rs117671242 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 613 chr1 3721386 3721387 rs6680559 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1662.000000,3346.000000, 0.331869,0.668131, 613 chr1 3721608 3721609 rs12127399 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 655.000000,4353.000000, 0.130791,0.869209, maf-5-some-pop,maf-5-all-pops 613 chr1 3721693 3721693 rs36007194 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,ABI,BILGI_BIOE,EVA-GONL,LUNTER,SSMP, 2 -,T, 4468.000000,540.000000, 0.892173,0.107827, 613 chr1 3721858 3721859 rs6691991 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1141.000000,3867.000000, 0.227835,0.772165, maf-5-some-pop,maf-5-all-pops 613 chr1 3721962 3721963 rs6424053 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1546.000000,3462.000000, 0.308706,0.691294, maf-5-some-pop,maf-5-all-pops 613 chr1 3722129 3722130 rs10909798 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1674.000000,3334.000000, 0.334265,0.665735, maf-5-some-pop,maf-5-all-pops 613 chr1 3722287 3722288 rs2996425 0 - A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 613 chr1 3722308 3722309 rs6424054 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2676.000000,2332.000000, 0.534345,0.465655, maf-5-some-pop,maf-5-all-pops 613 chr1 3722466 3722467 rs7526018 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop,maf-5-all-pops 613 chr1 3722485 3722486 rs6424056 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM_SSAHASNP,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 681.000000,4327.000000, 0.135982,0.864018, maf-5-some-pop,maf-5-all-pops 613 chr1 3722542 3722543 rs116770911 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 613 chr1 3722605 3722606 rs185503729 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4895.000000,113.000000, 0.977436,0.022564, 613 chr1 3722640 3722641 rs12746148 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1644.000000,3364.000000, 0.328275,0.671725, 613 chr1 3722652 3722653 rs12073948 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1123.000000,3885.000000, 0.224241,0.775759, 613 chr1 3722741 3722742 rs7416185 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3422.000000,1586.000000, 0.683307,0.316693, 613 chr1 3722770 3722771 rs58921282 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,HGSV,TISHKOFF, 2 A,C, 337.000000,4671.000000, 0.067292,0.932708, 613 chr1 3722808 3722810 rs35364504 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 10 1000GENOMES,ABI,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,SSMP,TISHKOFF, 2 -,GA, 3429.000000,1579.000000, 0.684704,0.315296, 613 chr1 3722829 3722830 rs12125964 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 642.000000,4366.000000, 0.128195,0.871805, 613 chr1 3722972 3722973 rs150407234 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, 613 chr1 3722984 3722985 rs145400060 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 613 chr1 3723154 3723155 rs12125237 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4153.000000,855.000000, 0.829273,0.170727, 613 chr1 3723194 3723195 rs4587513 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2563.000000,2445.000000, 0.511781,0.488219, 613 chr1 3723202 3723203 rs4366262 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3456.000000,1552.000000, 0.690096,0.309904, 613 chr1 3723226 3723227 rs12120370 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2563.000000,2445.000000, 0.511781,0.488219, 613 chr1 3723379 3723380 rs60647949 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,T, 137.000000,4871.000000, 0.027356,0.972644, 613 chr1 3723467 3723468 rs57331688 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4831.000000,177.000000, 0.964656,0.035344, maf-5-some-pop 613 chr1 3723707 3723708 rs12723041 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop,maf-5-all-pops 613 chr1 3723989 3723990 rs12723501 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 898.000000,4110.000000, 0.179313,0.820687, maf-5-some-pop,maf-5-all-pops 613 chr1 3724007 3724015 rs149043972 0 + TTTATTTA TTTATTTA -/TTTATTTA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,LUNTER, 2 -,TTTATTTA, 2400.000000,2608.000000, 0.479233,0.520767, 613 chr1 3724054 3724055 rs9424300 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4029.000000,979.000000, 0.804513,0.195487, 613 chr1 3724080 3724081 rs7526912 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 3400.000000,1608.000000, 0.678914,0.321086, 613 chr1 3724190 3724191 rs34382643 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 2919.000000,2089.000000, 0.582867,0.417133, 613 chr1 3724279 3724280 rs147338388 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4792.000000,216.000000, 0.956869,0.043131, 613 chr1 3724328 3724329 rs7529427 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3421.000000,1587.000000, 0.683107,0.316893, maf-5-some-pop,maf-5-all-pops 613 chr1 3724371 3724372 rs7515345 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1553.000000,3455.000000, 0.310104,0.689896, maf-5-some-pop,maf-5-all-pops 613 chr1 3724505 3724505 rs113531079 0 + - - -/ATCTC genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,LUNTER, 2 -,ATCTC, 1647.000000,3361.000000, 0.328874,0.671126, 613 chr1 3724587 3724588 rs7527199 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1586.000000,3422.000000, 0.316693,0.683307, maf-5-some-pop,maf-5-all-pops 613 chr1 3724826 3724827 rs142886325 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,C, 73.000000,4935.000000, 0.014577,0.985423, 613 chr1 3724884 3724885 rs12728640 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 896.000000,4112.000000, 0.178914,0.821086, maf-5-some-pop,maf-5-all-pops 613 chr1 3724900 3724901 rs9424302 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3976.000000,1032.000000, 0.793930,0.206070, maf-5-some-pop,maf-5-all-pops 613 chr1 3725071 3725072 rs141259737 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4895.000000,113.000000, 0.977436,0.022564, 613 chr1 3725195 3725196 rs28606492 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3863.000000,1145.000000, 0.771366,0.228634, 613 chr1 3725317 3725318 rs146518847 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,WARNICH_LAB, 2 G,T, 4895.000000,113.000000, 0.977436,0.022564, 613 chr1 3725441 3725442 rs7530315 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1552.000000,3456.000000, 0.309904,0.690096, maf-5-some-pop,maf-5-all-pops 613 chr1 3725590 3725591 rs72847403 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,maf-5-all-pops 613 chr1 3725719 3725720 rs113462634 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4671.000000,337.000000, 0.932708,0.067292, 613 chr1 3726325 3726326 rs10752721 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2068.000000,2940.000000, 0.412939,0.587061, maf-5-some-pop,maf-5-all-pops 613 chr1 3726356 3726357 rs138006781 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, 613 chr1 3726850 3726851 rs4648407 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3537.000000,1471.000000, 0.706270,0.293730, maf-5-some-pop 613 chr1 3727031 3727032 rs12127249 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1244.000000,3764.000000, 0.248403,0.751597, 613 chr1 3727156 3727157 rs12741242 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 515.000000,4493.000000, 0.102835,0.897165, 613 chr1 3727516 3727517 rs67003509 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4442.000000,566.000000, 0.886981,0.113019, maf-5-some-pop,maf-5-all-pops 613 chr1 3727673 3727674 rs34187245 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop,maf-5-all-pops 613 chr1 3727707 3727708 rs75752147 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 613 chr1 3728060 3728061 rs12135894 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4387.000000,621.000000, 0.875998,0.124002, maf-5-some-pop,maf-5-all-pops 613 chr1 3728102 3728103 rs6694638 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 925.000000,4083.000000, 0.184704,0.815296, maf-5-some-pop,maf-5-all-pops 613 chr1 3728304 3728305 rs12070233 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,SC_SNP, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 613 chr1 3728746 3728747 rs60142135 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 613 chr1 3729168 3729169 rs7528951 0 + C C C/G genomic single unknown 0 0 untranslated-3 exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 2706.000000,2302.000000, 0.540335,0.459665, 613 chr1 3729463 3729467 rs200260349 0 + TAAC TAAC -/TAAC genomic deletion unknown 0 0 untranslated-3 range 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 -,TAAC, 130.000000,4878.000000, 0.025959,0.974042, 613 chr1 3729566 3729567 rs76759008 0 + A A A/C genomic single unknown 0 0 untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop 613 chr1 3729586 3729587 rs7543169 0 + A A A/G genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,WI_SSAHASNP, 2 A,G, 1723.000000,3285.000000, 0.344050,0.655950, maf-5-some-pop,maf-5-all-pops 613 chr1 3729636 3729637 rs78103829 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 677.000000,4331.000000, 0.135184,0.864816, maf-5-some-pop,maf-5-all-pops 613 chr1 3729795 3729796 rs79175490 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop 613 chr1 3729818 3729818 rs566465862 0 + - - -/T genomic insertion unknown 0 0 untranslated-3 between 1 1 1000GENOMES, 2 -,T, 2244.000000,2764.000000, 0.448083,0.551917, 613 chr1 3730139 3730140 rs36097837 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4331.000000,677.000000, 0.864816,0.135184, maf-5-some-pop,maf-5-all-pops 613 chr1 3730434 3730435 rs6695834 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3267.000000,1741.000000, 0.652356,0.347644, maf-5-some-pop,maf-5-all-pops 613 chr1 3731019 3731020 rs3795256 0 - G G C/G genomic single unknown 0 0 near-gene-3,untranslated-3 exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 613 chr1 3731616 3731617 rs3795255 0 + G G C/G genomic single unknown 0 0 untranslated-3 exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,YUSUKE, 2 C,G, 176.000000,4832.000000, 0.035144,0.964856, maf-5-some-pop 613 chr1 3731653 3731654 rs113041467 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 3 1000GENOMES,BCM-HGSC-SUB,GMI, 2 C,T, 4727.000000,281.000000, 0.943890,0.056110, 613 chr1 3731656 3731657 rs34060840 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 10 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,TISHKOFF, 2 C,T, 4330.000000,678.000000, 0.864617,0.135383, maf-5-some-pop 613 chr1 3731958 3731959 rs12729542 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 12 1000GENOMES,ABI,CLINSEQ_SNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSAHASNP,SSMP, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop,maf-5-all-pops 613 chr1 3731964 3731965 rs12728401 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 13 1000GENOMES,ABI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,SSMP, 2 A,G, 516.000000,4492.000000, 0.103035,0.896965, maf-5-some-pop 613 chr1 3732102 3732103 rs4648409 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3289.000000,1719.000000, 0.656749,0.343251, maf-5-some-pop,maf-5-all-pops 613 chr1 3732171 3732172 rs4233019 0 + C C C/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1719.000000,3289.000000, 0.343251,0.656749, maf-5-some-pop,maf-5-all-pops 613 chr1 3732194 3732195 rs117132607 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop,maf-5-all-pops 613 chr1 3732253 3732254 rs35136906 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,BL,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 3091.000000,1917.000000, 0.617212,0.382788, 613 chr1 3732451 3732452 rs4648410 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1722.000000,3286.000000, 0.343850,0.656150, 613 chr1 3732495 3732496 rs4648411 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4332.000000,676.000000, 0.865016,0.134984, maf-5-some-pop 613 chr1 3732638 3732639 rs6702916 0 + T T A/T genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3288.000000,1720.000000, 0.656550,0.343450, maf-5-some-pop 613 chr1 3732706 3732707 rs6702935 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3287.000000,1721.000000, 0.656350,0.343650, maf-5-some-pop 613 chr1 3732781 3732782 rs6703035 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3463.000000,1545.000000, 0.691494,0.308506, maf-5-some-pop 613 chr1 3733160 3733161 rs11809965 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,G, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop 613 chr1 3733216 3733217 rs79287741 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop 613 chr1 3733299 3733300 rs77285885 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 613 chr1 3733390 3733391 rs12747978 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 676.000000,4332.000000, 0.134984,0.865016, maf-5-some-pop,maf-5-all-pops 613 chr1 3733465 3733466 rs9286791 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1730.000000,3278.000000, 0.345447,0.654553, maf-5-some-pop 613 chr1 3735152 3735153 rs4648412 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1726.000000,3282.000000, 0.344649,0.655351, maf-5-some-pop,maf-5-all-pops 613 chr1 3735595 3735596 rs76037079 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop 613 chr1 3735695 3735696 rs57991510 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, 613 chr1 3736318 3736319 rs9424303 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1551.000000,3457.000000, 0.309704,0.690296, maf-5-some-pop,maf-5-all-pops 613 chr1 3736335 3736336 rs9424304 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3463.000000,1545.000000, 0.691494,0.308506, maf-5-some-pop,maf-5-all-pops 613 chr1 3736339 3736340 rs9424305 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1841.000000,3167.000000, 0.367612,0.632388, maf-5-some-pop,maf-5-all-pops 613 chr1 3736681 3736682 rs58645065 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop,maf-5-all-pops 613 chr1 3736690 3736691 rs35265446 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 568.000000,4440.000000, 0.113419,0.886581, maf-5-some-pop,maf-5-all-pops 613 chr1 3736922 3736923 rs58074017 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop 613 chr1 3737035 3737036 rs9286792 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1313.000000,3695.000000, 0.262181,0.737819, maf-5-some-pop,maf-5-all-pops 613 chr1 3737058 3737058 rs563477492 0 + - - -/G genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,SSIP, 2 -,G, 3099.000000,1909.000000, 0.618810,0.381190, 613 chr1 3737102 3737103 rs9424306 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4.000000,6.000000, 0.400000,0.600000, 613 chr1 3737539 3737540 rs9424308 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1550.000000,3458.000000, 0.309505,0.690495, maf-5-some-pop,maf-5-all-pops 613 chr1 3737738 3737739 rs9424288 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1551.000000,3457.000000, 0.309704,0.690296, maf-5-some-pop 613 chr1 3738213 3738214 rs4648413 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3070.000000,1938.000000, 0.613019,0.386981, maf-5-some-pop,maf-5-all-pops 613 chr1 3738247 3738248 rs12077996 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,maf-5-all-pops 613 chr1 3738319 3738320 rs59093589 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop,maf-5-all-pops 613 chr1 3738331 3738332 rs4648414 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 1517.000000,3491.000000, 0.302915,0.697085, maf-5-some-pop 613 chr1 3738582 3738583 rs9424289 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4021.000000,987.000000, 0.802915,0.197085, maf-5-some-pop 613 chr1 3738696 3738697 rs34564995 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 225.000000,4783.000000, 0.044928,0.955072, maf-5-some-pop,maf-5-all-pops 613 chr1 3738711 3738712 rs57403742 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,maf-5-all-pops 613 chr1 3738782 3738784 rs577782062 0 + GA GA -/GA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,GA, 3455.000000,1553.000000, 0.689896,0.310104, 613 chr1 3738794 3738810 rs374817600 0 + GACAGACAGACAGAGG GACAGACAGACAGAGG -/GACAGACAGACAGAGG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GACAGACAGACAGAGG, 2095.000000,2913.000000, 0.418331,0.581669, 613 chr1 3738949 3738950 rs72847433 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 169.000000,4839.000000, 0.033746,0.966254, 613 chr1 3738953 3738954 rs79710484 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 613 chr1 3739128 3739129 rs60128072 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop 613 chr1 3739159 3739160 rs72847435 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,maf-5-all-pops 613 chr1 3739188 3739189 rs4233020 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1956.000000,3052.000000, 0.390575,0.609425, maf-5-some-pop,maf-5-all-pops 613 chr1 3739271 3739272 rs2027546 0 + T T A/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,GMI,HGSV,SSMP,TSC-CSHL, 2 A,T, 3492.000000,1516.000000, 0.697284,0.302716, 613 chr1 3739289 3739290 rs2027547 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 3071.000000,1937.000000, 0.613219,0.386781, maf-5-some-pop,maf-5-all-pops 613 chr1 3739299 3739300 rs74049758 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop,maf-5-all-pops 613 chr1 3739333 3739334 rs76736198 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 613 chr1 3739381 3739382 rs3737595 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 613 chr1 3739511 3739512 rs2027548 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 A,G, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop 613 chr1 3739610 3739611 rs59648769 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop,maf-5-all-pops 613 chr1 3740233 3740234 rs12084439 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,SC_SNP,TISHKOFF, 2 A,G, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop,maf-5-all-pops 613 chr1 3740425 3740426 rs79797528 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 175.000000,4833.000000, 0.034944,0.965056, maf-5-some-pop,maf-5-all-pops 613 chr1 3740461 3740462 rs75385332 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 175.000000,4833.000000, 0.034944,0.965056, 613 chr1 3740552 3740553 rs56366252 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,maf-5-all-pops 613 chr1 3740718 3740719 rs145183297 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, 613 chr1 3740800 3740801 rs59471290 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 567.000000,4441.000000, 0.113219,0.886781, 613 chr1 3740837 3740838 rs150444426 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4827.000000,181.000000, 0.963858,0.036142, 613 chr1 3741210 3741211 rs4648415 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3491.000000,1517.000000, 0.697085,0.302915, maf-5-some-pop 613 chr1 3741384 3741385 rs117989865 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4830.000000,178.000000, 0.964457,0.035543, maf-5-some-pop,maf-5-all-pops 613 chr1 3741417 3741418 rs183293038 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,C, 4836.000000,172.000000, 0.965655,0.034345, 613 chr1 3741440 3741441 rs34659788 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 C,T, 1942.000000,3066.000000, 0.387780,0.612220, maf-5-some-pop,maf-5-all-pops 613 chr1 3741474 3741475 rs111449448 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 259.000000,4749.000000, 0.051717,0.948283, 613 chr1 3741563 3741564 rs35600686 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,BL,EVA-GONL,SSMP, 2 C,T, 3107.000000,1901.000000, 0.620407,0.379593, 613 chr1 3741642 3741643 rs142990214 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 1959.000000,3049.000000, 0.391174,0.608826, 613 chr1 3741708 3741709 rs35628110 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 3046.000000,1962.000000, 0.608227,0.391773, 613 chr1 3741781 3741782 rs7552969 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1942.000000,3066.000000, 0.387780,0.612220, maf-5-some-pop,maf-5-all-pops 613 chr1 3741852 3741853 rs79468982 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 613 chr1 3741922 3741923 rs2996427 0 - G G A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 2 1000GENOMES,SC_JCM, 4 A,C,G,T, 4.000000,5004.000000,5004.000000,4.000000, 0.000399,0.499601,0.499601,0.000399, 613 chr1 3741984 3741985 rs16824124 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 677.000000,4331.000000, 0.135184,0.864816, maf-5-some-pop 613 chr1 3742102 3742103 rs9424309 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3637.000000,1371.000000, 0.726238,0.273762, maf-5-some-pop,maf-5-all-pops 613 chr1 3742178 3742179 rs7530291 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3453.000000,1555.000000, 0.689497,0.310503, maf-5-some-pop 613 chr1 3742256 3742257 rs12759497 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4303.000000,705.000000, 0.859225,0.140775, maf-5-some-pop 613 chr1 3742497 3742498 rs28617584 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,SSAHASNP,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 613 chr1 3742824 3742826 rs199670608 0 + TA TA -/TA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,TA, 109.000000,4899.000000, 0.021765,0.978235, 613 chr1 3743131 3743132 rs4648344 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2114.000000,2894.000000, 0.422125,0.577875, maf-5-some-pop 613 chr1 3743150 3743151 rs4648345 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 516.000000,4492.000000, 0.103035,0.896965, maf-5-some-pop 613 chr1 3743185 3743186 rs114208229 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop 613 chr1 3743318 3743319 rs6663840 0 + G G A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2371.000000,2637.000000, 0.473442,0.526558, maf-5-some-pop,maf-5-all-pops 613 chr1 3743349 3743350 rs58111155 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,G, 259.000000,4749.000000, 0.051717,0.948283, maf-5-some-pop 613 chr1 3743433 3743433 rs5772126 0 + - - -/G genomic insertion unknown 0 0 intron between 1 12 1000GENOMES,ABI,BGI,BILGI_BIOE,BL,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 828.000000,4180.000000, 0.165335,0.834665, 613 chr1 3743553 3743553 rs111326389 0 + - - -/A genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,BL,BUSHMAN,EVA-GONL,LUNTER,SSIP,SSMP,TISHKOFF, 2 -,A, 4377.000000,631.000000, 0.874002,0.125998, 613 chr1 3743702 3743703 rs16824152 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop 613 chr1 3743840 3743841 rs114895716 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 613 chr1 3743994 3743995 rs12736124 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1356.000000,3652.000000, 0.270767,0.729233, maf-5-some-pop 613 chr1 3744046 3744047 rs118082204 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop,maf-5-all-pops 613 chr1 3744083 3744084 rs9424310 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2851.000000,2157.000000, 0.569289,0.430711, maf-5-some-pop,maf-5-all-pops 613 chr1 3744125 3744126 rs78933805 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop 613 chr1 3744248 3744249 rs7511793 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop,maf-5-all-pops 613 chr1 3744272 3744273 rs75376818 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop 613 chr1 3744305 3744306 rs12727043 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1357.000000,3651.000000, 0.270966,0.729034, maf-5-some-pop 613 chr1 3744367 3744368 rs12740589 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 679.000000,4329.000000, 0.135583,0.864417, maf-5-some-pop,maf-5-all-pops 613 chr1 3744547 3744548 rs10797343 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1752.000000,3256.000000, 0.349840,0.650160, maf-5-some-pop,maf-5-all-pops 613 chr1 3744569 3744570 rs56136408 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,maf-5-all-pops 613 chr1 3744640 3744641 rs12134919 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 825.000000,4183.000000, 0.164736,0.835264, maf-5-some-pop,maf-5-all-pops 613 chr1 3745014 3745015 rs34839626 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 567.000000,4441.000000, 0.113219,0.886781, maf-5-some-pop,maf-5-all-pops 613 chr1 3745131 3745132 rs80147233 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4814.000000,194.000000, 0.961262,0.038738, maf-5-some-pop,maf-5-all-pops 613 chr1 3745132 3745133 rs6657042 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2803.000000,2205.000000, 0.559704,0.440296, maf-5-some-pop,maf-5-all-pops 613 chr1 3745192 3745193 rs6659702 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 2206.000000,2802.000000, 0.440495,0.559505, maf-5-some-pop,maf-5-all-pops 613 chr1 3745373 3745374 rs6659687 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3650.000000,1358.000000, 0.728834,0.271166, maf-5-some-pop 613 chr1 3745416 3745416 rs112957422 0 + - - -/AA genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,LUNTER,PJP, 2 -,AA, 2802.000000,2206.000000, 0.559505,0.440495, 613 chr1 3745470 3745471 rs78259431 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop,maf-5-all-pops 613 chr1 3745556 3745557 rs6670916 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1752.000000,3256.000000, 0.349840,0.650160, maf-5-some-pop,maf-5-all-pops 613 chr1 3746115 3746116 rs1836 0 + A A A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WIAF,YUSUKE, 2 A,G, 1054.000000,3954.000000, 0.210463,0.789537, maf-5-some-pop,maf-5-all-pops 613 chr1 3746588 3746589 rs2275826 0 - C C C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,NHLBI-ESP,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 613 chr1 3746634 3746635 rs145970148 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 613 chr1 3746709 3746710 rs17403773 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 613 chr1 3746818 3746819 rs77989248 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 613 chr1 3747022 3747023 rs72640913 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4182.000000,826.000000, 0.835064,0.164936, maf-5-some-pop,maf-5-all-pops 613 chr1 3747059 3747060 rs72847467 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop,maf-5-all-pops 613 chr1 3747299 3747300 rs4648416 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3651.000000,1357.000000, 0.729034,0.270966, maf-5-some-pop,maf-5-all-pops 613 chr1 3747318 3747319 rs4648417 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4181.000000,827.000000, 0.834864,0.165136, maf-5-some-pop,maf-5-all-pops 613 chr1 3747541 3747542 rs75187319 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,maf-5-all-pops 613 chr1 3747579 3747580 rs6424058 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3280.000000,1728.000000, 0.654952,0.345048, maf-5-some-pop,maf-5-all-pops 613 chr1 3747602 3747603 rs6413779 0 + T T C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop,maf-5-all-pops 613 chr1 3747826 3747827 rs72847470 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 184.000000,4824.000000, 0.036741,0.963259, 613 chr1 3748084 3748085 rs7522227 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2436.000000,2572.000000, 0.486422,0.513578, maf-5-some-pop,maf-5-all-pops 613 chr1 3748106 3748107 rs7524674 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1357.000000,3651.000000, 0.270966,0.729034, maf-5-some-pop 613 chr1 3748170 3748171 rs7524765 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 613 chr1 3748461 3748462 rs112711131 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 A,T, 102.000000,4906.000000, 0.020367,0.979633, 613 chr1 3748512 3748513 rs7535133 0 + G G G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 G,T, 3651.000000,1357.000000, 0.729034,0.270966, maf-5-some-pop 613 chr1 3748604 3748605 rs16824192 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 822.000000,4186.000000, 0.164137,0.835863, maf-5-some-pop,maf-5-all-pops 613 chr1 3748654 3748655 rs79903886 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop 613 chr1 3748687 3748688 rs17403836 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 3493.000000,1515.000000, 0.697484,0.302516, maf-5-some-pop 613 chr1 3748868 3748869 rs553956030 0 + T T G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 964.000000,4044.000000, 0.192492,0.807508, 613 chr1 3748981 3748982 rs61768911 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 984.000000,4024.000000, 0.196486,0.803514, 613 chr1 3749093 3749094 rs61768912 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI, 2 C,T, 1662.000000,3346.000000, 0.331869,0.668131, maf-5-some-pop,maf-5-all-pops 613 chr1 3749101 3749102 rs61768913 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI, 2 A,G, 3248.000000,1760.000000, 0.648562,0.351438, maf-5-some-pop,maf-5-all-pops 613 chr1 3749103 3749104 rs61768914 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 3276.000000,1732.000000, 0.654153,0.345847, maf-5-some-pop,maf-5-all-pops 613 chr1 3749114 3749115 rs61768915 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 1474.000000,3534.000000, 0.294329,0.705671, maf-5-some-pop,maf-5-all-pops 613 chr1 3749356 3749357 rs6684560 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3958.000000,1050.000000, 0.790335,0.209665, maf-5-some-pop,maf-5-all-pops 613 chr1 3749587 3749588 rs6676260 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3952.000000,1056.000000, 0.789137,0.210863, 613 chr1 3749609 3749610 rs6684759 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 814.000000,4194.000000, 0.162540,0.837460, 613 chr1 3749647 3749648 rs10797345 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP, 2 A,G, 1730.000000,3278.000000, 0.345447,0.654553, maf-5-some-pop,maf-5-all-pops 613 chr1 3749693 3749694 rs6673716 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1070.000000,3938.000000, 0.213658,0.786342, 613 chr1 3749772 3749773 rs6673807 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1054.000000,3954.000000, 0.210463,0.789537, maf-5-some-pop,maf-5-all-pops 613 chr1 3750074 3750075 rs12755519 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1389.000000,3619.000000, 0.277356,0.722644, maf-5-some-pop 613 chr1 3750685 3750686 rs58355219 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, maf-5-some-pop,maf-5-all-pops 613 chr1 3750730 3750731 rs6680017 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3954.000000,1054.000000, 0.789537,0.210463, maf-5-some-pop,maf-5-all-pops 613 chr1 3751102 3751103 rs4648418 0 + T T G/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1363.000000,3645.000000, 0.272165,0.727835, maf-5-some-pop 613 chr1 3751277 3751278 rs2887273 0 - C C C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 613 chr1 3751458 3751459 rs112306922 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,C, 120.000000,4888.000000, 0.023962,0.976038, 613 chr1 3751728 3751728 rs34966926 0 + - - -/T genomic insertion unknown 0 0 intron between 1 11 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,T, 3630.000000,1378.000000, 0.724840,0.275160, 613 chr1 3751936 3751937 rs11800962 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 613 chr1 3751965 3751966 rs4648419 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 1054.000000,3954.000000, 0.210463,0.789537, maf-5-some-pop,maf-5-all-pops 613 chr1 3752054 3752055 rs12741344 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 613 chr1 3752120 3752121 rs113946478 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 344.000000,4664.000000, 0.068690,0.931310, 613 chr1 3752569 3752570 rs34927580 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,ABI,BILGI_BIOE,BL,HGSV,SSMP, 2 -,A, 3731.000000,1277.000000, 0.745008,0.254992, 613 chr1 3752738 3752739 rs7548009 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1357.000000,3651.000000, 0.270966,0.729034, 613 chr1 3752791 3752792 rs111640545 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 620.000000,4388.000000, 0.123802,0.876198, maf-5-some-pop,maf-5-all-pops 613 chr1 3752856 3752857 rs7537951 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3643.000000,1365.000000, 0.727436,0.272564, 613 chr1 3752868 3752870 rs59512443 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,HGSV,PJP, 2 -,AA, 3945.000000,1063.000000, 0.787740,0.212260, 613 chr1 3752940 3752941 rs115574323 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 613 chr1 3753012 3753013 rs12746541 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1365.000000,3643.000000, 0.272564,0.727436, maf-5-some-pop 613 chr1 3753135 3753136 rs2275824 0 - A A A/T genomic single unknown 0 0 missense exact 1 23 1000GENOMES,AFFY,BCMHGSC_JDW,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 613 chr1 3753314 3753315 rs2275823 0 - G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,YUSUKE, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 613 chr1 3753812 3753813 rs12084604 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,TISHKOFF, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop 613 chr1 3754488 3754489 rs12409082 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop,maf-5-all-pops 613 chr1 3754595 3754596 rs6683827 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1050.000000,3958.000000, 0.209665,0.790335, maf-5-some-pop,maf-5-all-pops 613 chr1 3755043 3755044 rs4648420 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3651.000000,1357.000000, 0.729034,0.270966, maf-5-some-pop 613 chr1 3755964 3755965 rs113722586 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 613 chr1 3756225 3756226 rs61746709 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 8 1000GENOMES,CLINSEQ_SNP,CORNELL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop 613 chr1 3756461 3756462 rs143529319 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 613 chr1 3756492 3756493 rs7535887 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4051.000000,957.000000, 0.808906,0.191094, maf-5-some-pop 613 chr1 3756529 3756530 rs34211842 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 A,C, 1356.000000,3652.000000, 0.270767,0.729233, maf-5-some-pop,maf-5-all-pops 613 chr1 3756531 3756532 rs10797346 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 1926.000000,3082.000000, 0.384585,0.615415, maf-5-some-pop,maf-5-all-pops 613 chr1 3756822 3756823 rs150530900 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 613 chr1 3756908 3756909 rs7536266 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 648.000000,4360.000000, 0.129393,0.870607, 613 chr1 3756990 3756991 rs4648421 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 517.000000,4491.000000, 0.103235,0.896765, maf-5-some-pop,maf-5-all-pops 613 chr1 3757260 3757261 rs12063242 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, 613 chr1 3757299 3757300 rs10909800 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3280.000000,1728.000000, 0.654952,0.345048, 613 chr1 3757881 3757882 rs61322385 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, 613 chr1 3757887 3757888 rs60701430 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 G,T, 212.000000,4796.000000, 0.042332,0.957668, 613 chr1 3757889 3757890 rs61138141 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 -,C, 212.000000,4796.000000, 0.042332,0.957668, 613 chr1 3758199 3758200 rs116370331 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, 613 chr1 3758492 3758493 rs17412654 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 614.000000,4394.000000, 0.122604,0.877396, maf-5-some-pop,maf-5-all-pops 613 chr1 3758650 3758656 rs140734282 0 + TTTTTA TTTTTA -/TTTTTA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BL,EVA-GONL,LUNTER,TISHKOFF, 2 -,TTTTTA, 648.000000,4360.000000, 0.129393,0.870607, 613 chr1 3758680 3758681 rs12751065 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4747.000000,261.000000, 0.947883,0.052117, 613 chr1 3758714 3758715 rs12047585 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,SSMP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 613 chr1 3758717 3758718 rs4381131 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3958.000000,1050.000000, 0.790335,0.209665, 613 chr1 3758725 3758726 rs140376444 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 613 chr1 3758755 3758756 rs4411084 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 984.000000,4024.000000, 0.196486,0.803514, maf-5-some-pop,maf-5-all-pops 613 chr1 3759264 3759265 rs7542802 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4442.000000,566.000000, 0.886981,0.113019, maf-5-some-pop,maf-5-all-pops 613 chr1 3759332 3759333 rs3765773 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 3651.000000,1357.000000, 0.729034,0.270966, maf-5-some-pop 613 chr1 3759351 3759352 rs3765774 0 + T T A/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,YUSUKE, 2 A,T, 1753.000000,3255.000000, 0.350040,0.649960, maf-5-some-pop,maf-5-all-pops 613 chr1 3759499 3759500 rs3765775 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, 613 chr1 3759589 3759590 rs147342623 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 613 chr1 3759759 3759760 rs115065436 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,C, 93.000000,4915.000000, 0.018570,0.981430, 613 chr1 3759807 3759808 rs59049727 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,HGSV,ILLUMINA,TISHKOFF, 2 C,G, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop 613 chr1 3759889 3759889 rs60718273 0 + - - -/A genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,PJP,SSMP, 2 -,A, 3387.000000,1621.000000, 0.676318,0.323682, 613 chr1 3759936 3759937 rs10909801 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP, 2 A,G, 3493.000000,1515.000000, 0.697484,0.302516, maf-5-some-pop,maf-5-all-pops 613 chr1 3759939 3759940 rs578149347 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4835.000000,173.000000, 0.965455,0.034545, 613 chr1 3759940 3759940 rs34104489 0 + - - -/T genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,ABI, 2 -,T, 3090.000000,1918.000000, 0.617013,0.382987, 613 chr1 3760060 3760061 rs6701360 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1751.000000,3257.000000, 0.349641,0.650359, 613 chr1 3760108 3760114 rs55691503 0 + TTTTGA TTTTGA -/TTTTGA genomic deletion unknown 0 0 intron range 1 9 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,HGSV,LUNTER,SSMP,TISHKOFF,WARNICH_LAB, 2 -,TTTTGA, 1382.000000,3626.000000, 0.275958,0.724042, 613 chr1 3760113 3760114 rs6690371 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PJP,TISHKOFF, 2 A,G, 1069.000000,3939.000000, 0.213458,0.786542, 613 chr1 3760128 3760129 rs6678020 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1055.000000,3953.000000, 0.210663,0.789337, maf-5-some-pop,maf-5-all-pops 613 chr1 3760229 3760230 rs6680552 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 984.000000,4024.000000, 0.196486,0.803514, maf-5-some-pop 613 chr1 3760308 3760309 rs12145992 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1255.000000,3753.000000, 0.250599,0.749401, maf-5-some-pop 613 chr1 3760355 3760356 rs6695657 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4018.000000,990.000000, 0.802316,0.197684, 613 chr1 3760517 3760518 rs10752723 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 984.000000,4024.000000, 0.196486,0.803514, 613 chr1 3760669 3760670 rs7534819 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3627.000000,1381.000000, 0.724241,0.275759, maf-5-some-pop 613 chr1 3760671 3760672 rs77488694 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 613 chr1 3760983 3760984 rs75282198 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 613 chr1 3761057 3761058 rs6681372 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4329.000000,679.000000, 0.864417,0.135583, maf-5-some-pop 613 chr1 3761105 3761106 rs72848416 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4476.000000,532.000000, 0.893770,0.106230, 613 chr1 3761464 3761465 rs72848418 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 A,T, 532.000000,4476.000000, 0.106230,0.893770, maf-5-some-pop,maf-5-all-pops 613 chr1 3761771 3761772 rs7538067 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4393.000000,615.000000, 0.877196,0.122804, maf-5-some-pop,maf-5-all-pops 613 chr1 3762062 3762063 rs111581286 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,G, 4837.000000,171.000000, 0.965855,0.034145, 613 chr1 3762075 3762076 rs6699784 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SI_EXO,SSMP, 2 C,T, 1725.000000,3283.000000, 0.344449,0.655551, maf-5-some-pop,maf-5-all-pops 613 chr1 3762079 3762080 rs6699785 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SI_EXO,SSAHASNP,SSMP, 2 C,T, 3952.000000,1056.000000, 0.789137,0.210863, maf-5-some-pop,maf-5-all-pops 613 chr1 3762253 3762257 rs148788014 0 + ATTA ATTA -/ATTA genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,ATTA, 66.000000,4942.000000, 0.013179,0.986821, 613 chr1 3762415 3762416 rs6687498 0 + C C A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1750.000000,3258.000000, 0.349441,0.650559, maf-5-some-pop,maf-5-all-pops 613 chr1 3762467 3762468 rs7552387 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3650.000000,1358.000000, 0.728834,0.271166, 613 chr1 3762556 3762557 rs149454939 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,MPI_MOLGEN, 2 G,T, 80.000000,4928.000000, 0.015974,0.984026, 613 chr1 3762603 3762604 rs4494088 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1052.000000,3956.000000, 0.210064,0.789936, 613 chr1 3762720 3762721 rs4534323 0 + A A A/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1055.000000,3953.000000, 0.210663,0.789337, maf-5-some-pop,maf-5-all-pops 613 chr1 3762746 3762747 rs4307512 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1357.000000,3651.000000, 0.270966,0.729034, maf-5-some-pop,maf-5-all-pops 613 chr1 3762814 3762815 rs59414187 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 648.000000,4360.000000, 0.129393,0.870607, maf-5-some-pop,maf-5-all-pops 613 chr1 3762870 3762871 rs139636779 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,WARNICH_LAB, 2 C,T, 114.000000,4894.000000, 0.022764,0.977236, 613 chr1 3762888 3762889 rs4411083 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3611.000000,1397.000000, 0.721046,0.278954, maf-5-some-pop 613 chr1 3763163 3763164 rs12060299 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,AFFY,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop 613 chr1 3763393 3763394 rs79289264 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 613 chr1 3763566 3763567 rs10909802 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 105.000000,4903.000000, 0.020967,0.979034, maf-5-some-pop 613 chr1 3763761 3763762 rs79722905 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,T, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 613 chr1 3763863 3763864 rs12047360 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 1511.000000,3497.000000, 0.301717,0.698283, maf-5-some-pop 613 chr1 3763951 3763952 rs554534297 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 210.000000,4798.000000, 0.041933,0.958067, 613 chr1 3764215 3764216 rs10492942 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop 613 chr1 3764460 3764461 rs34401151 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3469.000000,1539.000000, 0.692692,0.307308, 613 chr1 3764610 3764611 rs55873991 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1515.000000,3493.000000, 0.302516,0.697484, maf-5-some-pop 613 chr1 3764690 3764691 rs28664230 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop,maf-5-all-pops 613 chr1 3764719 3764720 rs60475231 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop,maf-5-all-pops 613 chr1 3764833 3764834 rs56881298 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, 613 chr1 3764877 3764878 rs66497905 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3243.000000,1765.000000, 0.647564,0.352436, 613 chr1 3764967 3764968 rs184171642 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4899.000000,109.000000, 0.978235,0.021765, 613 chr1 3764978 3764979 rs12239252 0 + C C A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1766.000000,3242.000000, 0.352636,0.647364, 613 chr1 3765054 3765055 rs12239253 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3476.000000,1532.000000, 0.694089,0.305911, 613 chr1 3765095 3765096 rs371141201 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,WARNICH_LAB, 2 -,A, 1582.000000,3426.000000, 0.315895,0.684105, 613 chr1 3765385 3765386 rs3765777 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,YUSUKE, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop 613 chr1 3765423 3765424 rs10492943 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop 613 chr1 3765548 3765549 rs4648346 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3935.000000,1073.000000, 0.785743,0.214257, maf-5-some-pop,maf-5-all-pops 613 chr1 3765562 3765563 rs3765778 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1772.000000,3236.000000, 0.353834,0.646166, maf-5-some-pop,maf-5-all-pops 613 chr1 3765670 3765671 rs61768932 0 + G G C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 651.000000,4357.000000, 0.129992,0.870008, maf-5-some-pop,maf-5-all-pops 613 chr1 3765677 3765678 rs4648423 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1724.000000,3284.000000, 0.344249,0.655751, maf-5-some-pop,maf-5-all-pops 613 chr1 3765757 3765758 rs115633700 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, 613 chr1 3765830 3765831 rs59794257 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,HUMANGENOME_JCVI,PJP, 2 -,T, 3013.000000,1995.000000, 0.601637,0.398363, 613 chr1 3766058 3766059 rs12097923 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 77.000000,4931.000000, 0.015375,0.984625, 613 chr1 3766285 3766286 rs17404435 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 2815.000000,2193.000000, 0.562101,0.437899, maf-5-some-pop,maf-5-all-pops 613 chr1 3766397 3766397 rs113477425 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,BUSHMAN, 2 -,A, 4288.000000,720.000000, 0.856230,0.143770, 613 chr1 3766454 3766455 rs79717461 0 + A A A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 613 chr1 3766586 3766587 rs61768933 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 650.000000,4358.000000, 0.129792,0.870208, maf-5-some-pop,maf-5-all-pops 613 chr1 3767174 3767175 rs78023518 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 613 chr1 3767266 3767267 rs12730854 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 342.000000,4666.000000, 0.068291,0.931709, maf-5-some-pop,maf-5-all-pops 613 chr1 3767597 3767598 rs3765779 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1053.000000,3955.000000, 0.210264,0.789736, maf-5-some-pop,maf-5-all-pops 613 chr1 3767695 3767696 rs3765780 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1968.000000,3040.000000, 0.392971,0.607029, maf-5-some-pop,maf-5-all-pops 613 chr1 3767758 3767759 rs147847267 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, 613 chr1 3767818 3767819 rs12239379 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 613 chr1 3767987 3767988 rs117734715 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 613 chr1 3768567 3768568 rs72640928 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 649.000000,4359.000000, 0.129593,0.870407, maf-5-some-pop,maf-5-all-pops 613 chr1 3768718 3768719 rs1539647 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 2178.000000,2830.000000, 0.434904,0.565096, maf-5-some-pop,maf-5-all-pops 613 chr1 3768728 3768729 rs1539648 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 2197.000000,2811.000000, 0.438698,0.561302, maf-5-some-pop,maf-5-all-pops 613 chr1 3768742 3768743 rs2275820 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 613 chr1 3769033 3769034 rs3819007 0 + A A A/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,YUSUKE, 2 A,T, 3410.000000,1598.000000, 0.680911,0.319089, maf-5-some-pop,maf-5-all-pops 613 chr1 3769171 3769172 rs4540587 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 341.000000,4667.000000, 0.068091,0.931909, maf-5-some-pop,maf-5-all-pops 613 chr1 3769230 3769231 rs6657021 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2824.000000,2184.000000, 0.563898,0.436102, maf-5-some-pop,maf-5-all-pops 613 chr1 3769261 3769262 rs4507956 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3411.000000,1597.000000, 0.681110,0.318890, maf-5-some-pop,maf-5-all-pops 613 chr1 3769275 3769276 rs6668213 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 2181.000000,2827.000000, 0.435503,0.564497, maf-5-some-pop,maf-5-all-pops 613 chr1 3769285 3769286 rs6693152 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2827.000000,2181.000000, 0.564497,0.435503, maf-5-some-pop,maf-5-all-pops 613 chr1 3769328 3769329 rs6657132 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2827.000000,2181.000000, 0.564497,0.435503, maf-5-some-pop,maf-5-all-pops 613 chr1 3769364 3769365 rs6668306 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 2182.000000,2826.000000, 0.435703,0.564297, maf-5-some-pop,maf-5-all-pops 613 chr1 3769376 3769377 rs6693259 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2824.000000,2184.000000, 0.563898,0.436102, maf-5-some-pop,maf-5-all-pops 613 chr1 3769465 3769465 rs138280171 0 + - - -/GGCCAAGGA genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,BILGI_BIOE,LUNTER,TISHKOFF, 2 -,GGCCAAGGA, 3500.000000,1508.000000, 0.698882,0.301118, 613 chr1 3769478 3769479 rs75410905 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SSMP,TISHKOFF, 2 C,T, 2189.000000,2819.000000, 0.437101,0.562899, 613 chr1 3769563 3769564 rs11576718 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4018.000000,990.000000, 0.802316,0.197684, maf-5-some-pop,maf-5-all-pops 613 chr1 3769589 3769590 rs11578021 0 + G G C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 2184.000000,2824.000000, 0.436102,0.563898, maf-5-some-pop,maf-5-all-pops 613 chr1 3769599 3769600 rs56377927 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,TISHKOFF, 2 C,T, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 613 chr1 3769870 3769871 rs11578070 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 643.000000,4365.000000, 0.128395,0.871605, maf-5-some-pop,maf-5-all-pops 613 chr1 3769969 3769969 rs199709121 0 + - - -/GA genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,GMI, 2 -,GA, 4837.000000,171.000000, 0.965855,0.034145, 613 chr1 3769970 3769971 rs78653465 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,BL, 2 A,G, 4339.000000,669.000000, 0.866414,0.133586, 613 chr1 3769971 3769972 rs563523464 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4899.000000,109.000000, 0.978235,0.021765, 613 chr1 3770203 3770204 rs114955688 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 113.000000,4895.000000, 0.022564,0.977436, 613 chr1 3770364 3770365 rs61309375 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 11 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,A, 1830.000000,3178.000000, 0.365415,0.634585, 613 chr1 3770424 3770425 rs4233023 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1511.000000,3497.000000, 0.301717,0.698283, maf-5-some-pop,maf-5-all-pops 613 chr1 3770449 3770450 rs113120570 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 640.000000,4368.000000, 0.127796,0.872204, maf-5-some-pop,maf-5-all-pops 613 chr1 3770485 3770486 rs78359290 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 613 chr1 3770619 3770620 rs75401080 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, 613 chr1 3770641 3770642 rs11578581 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 648.000000,4360.000000, 0.129393,0.870607, maf-5-some-pop,maf-5-all-pops 613 chr1 3770732 3770733 rs79335678 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop 613 chr1 3770735 3770736 rs4582731 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1511.000000,3497.000000, 0.301717,0.698283, maf-5-some-pop 613 chr1 3770799 3770800 rs10909803 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1830.000000,3178.000000, 0.365415,0.634585, maf-5-some-pop,maf-5-all-pops 613 chr1 3770913 3770914 rs11576900 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4360.000000,648.000000, 0.870607,0.129393, maf-5-some-pop,maf-5-all-pops 613 chr1 3771083 3771084 rs11578652 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 649.000000,4359.000000, 0.129593,0.870407, 613 chr1 3771107 3771108 rs12023761 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1538.000000,3470.000000, 0.307109,0.692891, maf-5-some-pop 613 chr1 3771119 3771120 rs12023762 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1510.000000,3498.000000, 0.301518,0.698482, maf-5-some-pop 613 chr1 3771162 3771163 rs12026284 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1510.000000,3498.000000, 0.301518,0.698482, 613 chr1 3771199 3771202 rs547587334 0 + TTT TTT -/TTT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TTT, 1999.000000,3009.000000, 0.399161,0.600839, 613 chr1 3771347 3771348 rs4648424 0 + C C C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3224.000000,1784.000000, 0.643770,0.356230, maf-5-some-pop 613 chr1 3771368 3771369 rs12024538 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1538.000000,3470.000000, 0.307109,0.692891, maf-5-some-pop,maf-5-all-pops 613 chr1 3771546 3771547 rs7552678 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2831.000000,2177.000000, 0.565296,0.434704, 613 chr1 3771581 3771582 rs113135814 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4775.000000,233.000000, 0.953474,0.046526, 613 chr1 3771722 3771723 rs10909805 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 941.000000,4067.000000, 0.187899,0.812101, maf-5-some-pop 613 chr1 3771738 3771742 rs565815724 0 + TTTT TTTT -/TTTT genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,TTTT, 3158.000000,1850.000000, 0.630591,0.369409, 613 chr1 3771893 3771894 rs114176026 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 212.000000,4796.000000, 0.042332,0.957668, maf-5-some-pop 613 chr1 3772054 3772055 rs117431877 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop,maf-5-all-pops 613 chr1 3772274 3772275 rs4648348 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 14 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3475.000000,1533.000000, 0.693890,0.306110, maf-5-some-pop 613 chr1 3772358 3772359 rs4564078 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3177.000000,1831.000000, 0.634385,0.365615, maf-5-some-pop,maf-5-all-pops 613 chr1 3772459 3772460 rs35946672 0 + T T C/T genomic single unknown 0 0 coding-synon,intron,near-gene-5 exact 1 5 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,ILLUMINA, 2 C,T, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 613 chr1 3772865 3772866 rs61768936 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4343.000000,665.000000, 0.867212,0.132788, 613 chr1 3772938 3772939 rs4648349 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1827.000000,3181.000000, 0.364816,0.635184, maf-5-some-pop,maf-5-all-pops 613 chr1 3773033 3773034 rs4648425 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1593.000000,3415.000000, 0.318091,0.681909, maf-5-some-pop,maf-5-all-pops 613 chr1 3773078 3773079 rs140260649 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, 613 chr1 3773088 3773089 rs4648426 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1593.000000,3415.000000, 0.318091,0.681909, maf-5-some-pop,maf-5-all-pops 613 chr1 3773105 3773106 rs6424059 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3512.000000,1496.000000, 0.701278,0.298722, maf-5-some-pop 613 chr1 3773155 3773156 rs7533397 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,WI_SSAHASNP, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 613 chr1 3773250 3773251 rs4648427 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 3408.000000,1600.000000, 0.680511,0.319489, maf-5-some-pop,maf-5-all-pops 613 chr1 3773251 3773252 rs6424060 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,C, 1731.000000,3277.000000, 0.345647,0.654353, maf-5-some-pop,maf-5-all-pops 613 chr1 3773374 3773375 rs529748592 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 613 chr1 3773380 3773387 rs149429689 0 + CCCGCGC CCCGCGC -/CCCGCGC genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CCCGCGC, 1658.000000,3350.000000, 0.331070,0.668930, 613 chr1 3773387 3773387 rs569625053 0 + - - -/CCCGCGC genomic insertion unknown 0 0 intron,near-gene-5 between 1 1 1000GENOMES, 2 -,CCCGCGC, 4846.000000,162.000000, 0.967652,0.032348, 613 chr1 3773545 3773546 rs12145238 0 + A A A/C genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,SC_SNP,SSMP, 2 A,C, 3417.000000,1591.000000, 0.682308,0.317692, 613 chr1 3773587 3773588 rs7542369 0 + C C C/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3273.000000,1735.000000, 0.653554,0.346446, maf-5-some-pop,maf-5-all-pops 613 chr1 3773717 3773718 rs4648428 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 613 chr1 3773732 3773733 rs13374773 0 + C C A/C genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 12 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,WUGSC_SSAHASNP, 2 A,C, 1552.000000,3456.000000, 0.309904,0.690096, maf-5-some-pop,maf-5-all-pops 613 chr1 3773814 3773815 rs12126653 0 + C C C/G genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SC_SNP,SSMP, 2 C,G, 4300.000000,708.000000, 0.858626,0.141374, maf-5-some-pop,maf-5-all-pops 613 chr1 3774129 3774130 rs34891610 0 + A A A/G genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSMP, 2 A,G, 3454.000000,1554.000000, 0.689696,0.310304, maf-5-some-pop,maf-5-all-pops 613 chr1 3774137 3774138 rs12723005 0 + T T C/T genomic single unknown 0 0 near-gene-5,ncRNA,untranslated-5 exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SI_EXO,SSAHASNP,SSMP, 2 C,T, 1554.000000,3454.000000, 0.310304,0.689696, maf-5-some-pop,maf-5-all-pops 613 chr1 3774311 3774312 rs12726906 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1554.000000,3454.000000, 0.310304,0.689696, maf-5-some-pop,maf-5-all-pops 613 chr1 3774472 3774473 rs12740603 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3453.000000,1555.000000, 0.689497,0.310503, maf-5-some-pop,maf-5-all-pops 613 chr1 3774548 3774549 rs12127619 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3665.000000,1343.000000, 0.731829,0.268171, maf-5-some-pop 613 chr1 3774602 3774603 rs6667526 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 A,G, 659.000000,4349.000000, 0.131589,0.868411, maf-5-some-pop,maf-5-all-pops 613 chr1 3774625 3774626 rs10909806 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3965.000000,1043.000000, 0.791733,0.208267, maf-5-some-pop,maf-5-all-pops 613 chr1 3775136 3775137 rs59485899 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 613 chr1 3775225 3775226 rs58941669 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,CLINSEQ_SNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop 613 chr1 3775453 3775454 rs4376673 0 + C C C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 935.000000,4073.000000, 0.186701,0.813299, maf-5-some-pop 613 chr1 3775596 3775597 rs58298325 0 + G G C/G genomic single unknown 0 0 intron,near-gene-5 exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop,maf-5-all-pops 613 chr1 3775990 3775991 rs28633918 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSAHASNP, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 613 chr1 3776021 3776022 rs9786959 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3503.000000,1505.000000, 0.699481,0.300519, maf-5-some-pop 613 chr1 3776104 3776105 rs6660371 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop,maf-5-all-pops 613 chr1 3776165 3776166 rs6660459 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop 613 chr1 3776189 3776190 rs6660467 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop,maf-5-all-pops 613 chr1 3776613 3776614 rs59165038 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 978.000000,4030.000000, 0.195288,0.804712, maf-5-some-pop,maf-5-all-pops 613 chr1 3776677 3776678 rs58255137 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 664.000000,4344.000000, 0.132588,0.867412, maf-5-some-pop,maf-5-all-pops 613 chr1 3776988 3776989 rs12129902 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4310.000000,698.000000, 0.860623,0.139377, maf-5-some-pop 613 chr1 3777590 3777591 rs144128055 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 613 chr1 3777610 3777611 rs11800725 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1190.000000,3818.000000, 0.237620,0.762380, 613 chr1 3778237 3778238 rs12131756 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3667.000000,1341.000000, 0.732228,0.267772, maf-5-some-pop,maf-5-all-pops 613 chr1 3778883 3778884 rs6670437 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4367.000000,641.000000, 0.872005,0.127995, maf-5-some-pop,maf-5-all-pops 613 chr1 3779053 3779054 rs72848452 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop,maf-5-all-pops 613 chr1 3779150 3779151 rs4400555 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 973.000000,4035.000000, 0.194289,0.805711, maf-5-some-pop,maf-5-all-pops 613 chr1 3779440 3779441 rs11487242 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,SC_SNP,TISHKOFF, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, maf-5-some-pop,maf-5-all-pops 613 chr1 3779636 3779637 rs4573474 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4050.000000,958.000000, 0.808706,0.191294, 613 chr1 3779643 3779644 rs4475689 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3812.000000,1196.000000, 0.761182,0.238818, maf-5-some-pop,maf-5-all-pops 613 chr1 3779679 3779680 rs4393098 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1196.000000,3812.000000, 0.238818,0.761182, maf-5-some-pop,maf-5-all-pops 613 chr1 3779817 3779818 rs77486118 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4344.000000,664.000000, 0.867412,0.132588, maf-5-some-pop,maf-5-all-pops 613 chr1 3780115 3780116 rs116590486 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, 613 chr1 3780338 3780339 rs77858528 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4664.000000,344.000000, 0.931310,0.068690, maf-5-some-pop,maf-5-all-pops 613 chr1 3780555 3780556 rs10909807 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 956.000000,4052.000000, 0.190895,0.809105, maf-5-some-pop,maf-5-all-pops 613 chr1 3780983 3780984 rs6664953 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4390.000000,618.000000, 0.876597,0.123403, maf-5-some-pop,maf-5-all-pops 613 chr1 3781095 3781096 rs10797348 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,C, 3102.000000,1906.000000, 0.619409,0.380591, maf-5-some-pop,maf-5-all-pops 613 chr1 3781135 3781136 rs10752724 0 + C C C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop 613 chr1 3781340 3781341 rs10909808 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 613 chr1 3781829 3781830 rs12741965 0 + C C A/C genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1326.000000,3682.000000, 0.264776,0.735224, maf-5-some-pop 613 chr1 3781978 3781979 rs80311127 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 613 chr1 3782607 3782608 rs10909809 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCMHGSC_JDW,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 2833.000000,2175.000000, 0.565695,0.434305, maf-5-some-pop,maf-5-all-pops 613 chr1 3782633 3782634 rs61035383 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4778.000000,230.000000, 0.954073,0.045927, 613 chr1 3783133 3783134 rs79971761 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 613 chr1 3783277 3783278 rs10909810 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2122.000000,2886.000000, 0.423722,0.576278, maf-5-some-pop,maf-5-all-pops 613 chr1 3783441 3783442 rs61768956 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 613 chr1 3783451 3783452 rs76013156 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 252.000000,4756.000000, 0.050320,0.949681, maf-5-some-pop 613 chr1 3783497 3783498 rs11578530 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 366.000000,4642.000000, 0.073083,0.926917, 613 chr1 3783509 3783510 rs59518792 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,T, 4874.000000,134.000000, 0.973243,0.026757, 613 chr1 3783518 3783519 rs148277617 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4655.000000,353.000000, 0.929513,0.070487, 613 chr1 3783519 3783520 rs59455391 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 613 chr1 3783524 3783525 rs61423356 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, 613 chr1 3783572 3783573 rs10797349 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2388.000000,2620.000000, 0.476837,0.523163, 613 chr1 3783619 3783620 rs10797350 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2659.000000,2349.000000, 0.530950,0.469050, 613 chr1 3783662 3783663 rs10752726 0 + T T G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2508.000000,2500.000000, 0.500799,0.499201, 613 chr1 3783750 3783751 rs12035912 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3549.000000,1459.000000, 0.708666,0.291334, maf-5-some-pop,maf-5-all-pops 613 chr1 3783879 3783880 rs75683196 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, 613 chr1 3783897 3783898 rs71634375 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP, 2 C,T, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop,maf-5-all-pops 613 chr1 3783902 3783903 rs117488799 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 613 chr1 3784275 3784276 rs72848464 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 267.000000,4741.000000, 0.053315,0.946685, maf-5-some-pop 613 chr1 3784453 3784454 rs76754622 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 438.000000,4570.000000, 0.087460,0.912540, maf-5-some-pop,maf-5-all-pops 613 chr1 3784463 3784464 rs72848469 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 759.000000,4249.000000, 0.151558,0.848442, maf-5-some-pop,maf-5-all-pops 613 chr1 3785084 3785085 rs77694850 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 A,G, 4544.000000,464.000000, 0.907348,0.092652, maf-5-some-pop,maf-5-all-pops 613 chr1 3785171 3785172 rs75471632 0 + T T C/T genomic single by-cluster,by-frequency 0.277778 0.248452 intron exact 1 4 BL,BUSHMAN,ENSEMBL,SSMP, 2 C,T, 10.000000,2.000000, 0.833333,0.166667, 613 chr1 3785176 3785177 rs74205640 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,GMI,HUMANGENOME_JCVI,MPI_MOLGEN,PJP, 2 C,G, 2597.000000,2411.000000, 0.518570,0.481430, 613 chr1 3785223 3785228 rs565199748 0 + CCACA CCACA -/CCACA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CCACA, 4634.000000,374.000000, 0.925319,0.074681, 613 chr1 3785318 3785319 rs35748554 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 A,G, 4345.000000,663.000000, 0.867612,0.132388, maf-5-some-pop,maf-5-all-pops 613 chr1 3785374 3785375 rs35265408 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop,maf-5-all-pops 613 chr1 3785422 3785423 rs34874218 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4716.000000,292.000000, 0.941693,0.058307, maf-5-some-pop,maf-5-all-pops 613 chr1 3785460 3785461 rs116441473 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 613 chr1 3785537 3785538 rs78142113 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,C, 58.000000,4950.000000, 0.011582,0.988419, 613 chr1 3785625 3785626 rs187299116 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 4942.000000,66.000000, 0.986821,0.013179, 613 chr1 3785670 3785671 rs201185632 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 -,T, 60.000000,4948.000000, 0.011981,0.988019, 613 chr1 3785890 3785891 rs12734981 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4702.000000,306.000000, 0.938898,0.061102, 613 chr1 3785903 3785904 rs34141819 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4340.000000,668.000000, 0.866613,0.133387, 613 chr1 3785995 3785996 rs74585156 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4541.000000,467.000000, 0.906749,0.093251, maf-5-some-pop,maf-5-all-pops 613 chr1 3786032 3786033 rs77937786 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4563.000000,445.000000, 0.911142,0.088858, maf-5-some-pop,maf-5-all-pops 613 chr1 3786054 3786055 rs113558809 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4539.000000,469.000000, 0.906350,0.093650, maf-5-some-pop,maf-5-all-pops 613 chr1 3786145 3786146 rs35969031 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,NHLBI-ESP,PJP,SSMP,TISHKOFF, 2 C,G, 4341.000000,667.000000, 0.866813,0.133187, maf-5-some-pop,maf-5-all-pops 613 chr1 3786188 3786189 rs1141070 0 + G G A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 15 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,LEE,MGC_GENOME_DIFF,NHLBI-ESP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF, 2 A,G, 1073.000000,3935.000000, 0.214257,0.785743, maf-5-some-pop,maf-5-all-pops 613 chr1 3786409 3786410 rs10909811 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 657.000000,4351.000000, 0.131190,0.868810, maf-5-some-pop,maf-5-all-pops 613 chr1 3786575 3786576 rs12739949 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4703.000000,305.000000, 0.939097,0.060903, maf-5-some-pop 613 chr1 3786588 3786589 rs10909813 0 + T T G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop,maf-5-all-pops 613 chr1 3786595 3786596 rs371250222 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 613 chr1 3786611 3786612 rs5013486 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,TISHKOFF, 2 C,T, 3592.000000,1416.000000, 0.717252,0.282748, maf-5-some-pop,maf-5-all-pops 613 chr1 3786705 3786706 rs5013484 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3673.000000,1335.000000, 0.733427,0.266573, maf-5-some-pop,maf-5-all-pops 613 chr1 3786715 3786716 rs112873144 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4543.000000,465.000000, 0.907149,0.092851, maf-5-some-pop,maf-5-all-pops 613 chr1 3786744 3786745 rs12740232 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop,maf-5-all-pops 613 chr1 3786793 3786794 rs111737584 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 613 chr1 3786979 3786980 rs141048570 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,G, 493.000000,4515.000000, 0.098443,0.901558, 613 chr1 3787023 3787024 rs115336625 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop,maf-5-all-pops 613 chr1 3787030 3787031 rs35204761 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 292.000000,4716.000000, 0.058307,0.941693, maf-5-some-pop,maf-5-all-pops 613 chr1 3787129 3787130 rs12029267 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 608.000000,4400.000000, 0.121406,0.878594, maf-5-some-pop,maf-5-all-pops 613 chr1 3787186 3787187 rs35035893 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 644.000000,4364.000000, 0.128594,0.871406, maf-5-some-pop,maf-5-all-pops 613 chr1 3787195 3787196 rs34019348 0 + A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,T, 3621.000000,1387.000000, 0.723043,0.276957, maf-5-some-pop,maf-5-all-pops 613 chr1 3787293 3787294 rs74586717 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 658.000000,4350.000000, 0.131390,0.868610, maf-5-some-pop,maf-5-all-pops 613 chr1 3787378 3787379 rs78236349 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,MPI_MOLGEN, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 613 chr1 3787618 3787619 rs111459784 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, 613 chr1 3787671 3787672 rs76560640 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 613 chr1 3787719 3787720 rs181760725 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, 613 chr1 3787849 3787849 rs143728286 0 + - - -/T genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,T, 4632.000000,376.000000, 0.924920,0.075080, 613 chr1 3787881 3787882 rs113710477 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4528.000000,480.000000, 0.904153,0.095847, maf-5-some-pop,maf-5-all-pops 613 chr1 3787937 3787938 rs35787084 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4715.000000,293.000000, 0.941494,0.058506, 613 chr1 3787995 3787996 rs144840243 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 613 chr1 3788010 3788011 rs372868079 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 613 chr1 3788193 3788194 rs111904369 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 613 chr1 3788235 3788236 rs10909815 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4357.000000,651.000000, 0.870008,0.129992, maf-5-some-pop,maf-5-all-pops 613 chr1 3788319 3788320 rs112867265 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 613 chr1 3788436 3788437 rs10909816 0 + C C C/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4352.000000,656.000000, 0.869010,0.130990, maf-5-some-pop,maf-5-all-pops 613 chr1 3788498 3788499 rs12731872 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3013.000000,1995.000000, 0.601637,0.398363, maf-5-some-pop,maf-5-all-pops 613 chr1 3788637 3788638 rs66525235 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1090.000000,3918.000000, 0.217652,0.782348, maf-5-some-pop,maf-5-all-pops 613 chr1 3788705 3788706 rs72848480 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop 613 chr1 3788890 3788891 rs151051391 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4785.000000,223.000000, 0.955471,0.044529, 613 chr1 3788924 3788925 rs12085494 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4722.000000,286.000000, 0.942891,0.057109, maf-5-some-pop,maf-5-all-pops 613 chr1 3788932 3788933 rs112792642 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 262.000000,4746.000000, 0.052316,0.947684, 613 chr1 3788936 3788937 rs112427210 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 4743.000000,265.000000, 0.947085,0.052915, 613 chr1 3788967 3788968 rs111645751 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,TISHKOFF, 2 A,G, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop,maf-5-all-pops 613 chr1 3789194 3789195 rs11581401 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SI_EXO,SSMP, 2 C,T, 2131.000000,2877.000000, 0.425519,0.574481, maf-5-some-pop,maf-5-all-pops 613 chr1 3789210 3789211 rs75402433 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,G, 204.000000,36.000000, 0.850000,0.150000, maf-5-some-pop,maf-5-all-pops 613 chr1 3789318 3789319 rs34725762 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop,maf-5-all-pops 613 chr1 3789347 3789348 rs75796323 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 613 chr1 3789361 3789362 rs35930817 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4196.000000,812.000000, 0.837859,0.162141, maf-5-some-pop,maf-5-all-pops 613 chr1 3789661 3789662 rs11581471 0 + A A A/G genomic single unknown 0 0 intron,ncRNA exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1827.000000,3181.000000, 0.364816,0.635184, 613 chr1 3789813 3789814 rs66849805 0 + A A A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 3907.000000,1101.000000, 0.780152,0.219848, maf-5-some-pop,maf-5-all-pops 613 chr1 3789851 3789852 rs12756705 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4240.000000,768.000000, 0.846645,0.153355, maf-5-some-pop 613 chr1 3790000 3790001 rs35371895 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4240.000000,768.000000, 0.846645,0.153355, maf-5-some-pop,maf-5-all-pops 613 chr1 3790021 3790022 rs115738971 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop,maf-5-all-pops 613 chr1 3790129 3790130 rs12130391 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 795.000000,4213.000000, 0.158746,0.841254, 613 chr1 3790322 3790323 rs76249771 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 768.000000,4240.000000, 0.153355,0.846645, maf-5-some-pop 613 chr1 3790331 3790332 rs34108662 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 770.000000,4238.000000, 0.153754,0.846246, maf-5-some-pop,maf-5-all-pops 613 chr1 3790425 3790426 rs111901899 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, maf-5-some-pop,maf-5-all-pops 613 chr1 3790578 3790578 rs33942957 0 + - - -/TT genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,SSMP,TISHKOFF, 2 -,TT, 4239.000000,769.000000, 0.846446,0.153554, 613 chr1 3790644 3790645 rs35061131 0 + T T A/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,T, 769.000000,4239.000000, 0.153554,0.846446, maf-5-some-pop,maf-5-all-pops 613 chr1 3790656 3790657 rs139361830 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, 613 chr1 3790674 3790675 rs144308111 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, 613 chr1 3790772 3790773 rs34451576 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 A,G, 4155.000000,853.000000, 0.829673,0.170327, maf-5-some-pop,maf-5-all-pops 613 chr1 3790827 3790828 rs34664006 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,ABI,GMI,HUMANGENOME_JCVI,LUNTER,SSMP, 2 -,G, 765.000000,4243.000000, 0.152756,0.847244, 613 chr1 3790864 3790865 rs140475212 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4810.000000,198.000000, 0.960463,0.039537, 613 chr1 3791213 3791214 rs10752727 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 7.000000,11.000000, 0.388889,0.611111, 613 chr1 3791317 3791318 rs71634381 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP, 2 C,T, 4238.000000,770.000000, 0.846246,0.153754, 613 chr1 3791333 3791334 rs34001258 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL, 2 A,G, 340.000000,4668.000000, 0.067891,0.932109, maf-5-some-pop,maf-5-all-pops 613 chr1 3791347 3791348 rs77027679 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4521.000000,487.000000, 0.902756,0.097244, maf-5-some-pop,maf-5-all-pops 613 chr1 3791532 3791533 rs11584266 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1837.000000,3171.000000, 0.366813,0.633187, maf-5-some-pop,maf-5-all-pops 613 chr1 3791567 3791568 rs74752626 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 327.000000,4681.000000, 0.065296,0.934704, 613 chr1 3791582 3791583 rs35027999 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 4239.000000,769.000000, 0.846446,0.153554, maf-5-some-pop,maf-5-all-pops 613 chr1 3791926 3791927 rs78782686 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 613 chr1 3792054 3792055 rs59387186 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4072.000000,936.000000, 0.813099,0.186901, maf-5-some-pop,maf-5-all-pops 613 chr1 3792223 3792224 rs57783663 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 768.000000,4240.000000, 0.153355,0.846645, maf-5-some-pop,maf-5-all-pops 613 chr1 3792260 3792261 rs72848486 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop,maf-5-all-pops 613 chr1 3792309 3792310 rs36081432 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop 613 chr1 3792341 3792342 rs112169818 0 + T T G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 613 chr1 3792449 3792450 rs12757805 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 938.000000,4070.000000, 0.187300,0.812700, 613 chr1 3792485 3792486 rs12753769 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4070.000000,938.000000, 0.812700,0.187300, 613 chr1 3792501 3792502 rs112611665 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4862.000000,146.000000, 0.970847,0.029153, 613 chr1 3792521 3792522 rs12757844 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 304.000000,4704.000000, 0.060703,0.939297, 613 chr1 3792592 3792593 rs112003108 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 146.000000,4862.000000, 0.029153,0.970847, 613 chr1 3792656 3792657 rs111503079 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop,maf-5-all-pops 613 chr1 3792714 3792715 rs12754083 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4239.000000,769.000000, 0.846446,0.153554, maf-5-some-pop,maf-5-all-pops 613 chr1 3792727 3792728 rs12758318 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop,maf-5-all-pops 613 chr1 3792815 3792816 rs74510180 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop,maf-5-all-pops 613 chr1 3792867 3792868 rs77382547 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop,maf-5-all-pops 613 chr1 3792971 3792972 rs77838018 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop,maf-5-all-pops 613 chr1 3793067 3793068 rs57719213 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop,maf-5-all-pops 613 chr1 3793114 3793115 rs112624848 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 613 chr1 3793179 3793180 rs112902388 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 613 chr1 3793239 3793240 rs6670589 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop,maf-5-all-pops 613 chr1 3793323 3793324 rs6668103 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3465.000000,1543.000000, 0.691893,0.308107, maf-5-some-pop,maf-5-all-pops 613 chr1 3793373 3793374 rs6679297 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 763.000000,4245.000000, 0.152356,0.847644, maf-5-some-pop,maf-5-all-pops 613 chr1 3793781 3793782 rs60073470 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,LUNTER,TISHKOFF, 2 -,T, 228.000000,4780.000000, 0.045527,0.954473, 613 chr1 3793817 3793818 rs34103490 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4263.000000,745.000000, 0.851238,0.148762, maf-5-some-pop,maf-5-all-pops 613 chr1 3794112 3794113 rs77865905 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4785.000000,223.000000, 0.955471,0.044529, maf-5-some-pop,maf-5-all-pops 613 chr1 3794272 3794273 rs12132240 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4159.000000,849.000000, 0.830471,0.169529, maf-5-some-pop 613 chr1 3794285 3794286 rs7536320 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop,maf-5-all-pops 613 chr1 3794393 3794411 rs141793753 0 + CTGTGCCGGCTTTCTATT CTGTGCCGGCTTTCTATT -/CTGTGCCGGCTTTCTATT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,PJP, 2 -,CTGTGCCGGCTTTCTATT, 687.000000,4321.000000, 0.137181,0.862819, 613 chr1 3794420 3794421 rs60573564 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 227.000000,4781.000000, 0.045327,0.954673, maf-5-some-pop,maf-5-all-pops 613 chr1 3794469 3794470 rs113080768 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 227.000000,4781.000000, 0.045327,0.954673, maf-5-some-pop,maf-5-all-pops 613 chr1 3794503 3794504 rs72848494 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 613 chr1 3794647 3794648 rs59779728 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 741.000000,4267.000000, 0.147963,0.852037, maf-5-some-pop,maf-5-all-pops 613 chr1 3794676 3794677 rs72848496 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 613 chr1 3794766 3794767 rs12029387 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4265.000000,743.000000, 0.851637,0.148363, maf-5-some-pop,maf-5-all-pops 613 chr1 3794815 3794816 rs143376950 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, 613 chr1 3795068 3795069 rs72848497 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 613 chr1 3795091 3795092 rs72848499 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 613 chr1 3795265 3795266 rs117918273 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 613 chr1 3795287 3795288 rs77433109 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 434.000000,4574.000000, 0.086661,0.913339, maf-5-some-pop,maf-5-all-pops 613 chr1 3795290 3795291 rs12027018 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4269.000000,739.000000, 0.852436,0.147564, maf-5-some-pop,maf-5-all-pops 613 chr1 3795293 3795294 rs12080493 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 C,G, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 613 chr1 3795295 3795296 rs12027792 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 739.000000,4269.000000, 0.147564,0.852436, maf-5-some-pop,maf-5-all-pops 613 chr1 3795367 3795368 rs12027817 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 945.000000,4063.000000, 0.188698,0.811302, maf-5-some-pop,maf-5-all-pops 613 chr1 3795390 3795391 rs10737189 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3321.000000,1687.000000, 0.663139,0.336861, maf-5-some-pop,maf-5-all-pops 613 chr1 3795463 3795464 rs12027841 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 738.000000,4270.000000, 0.147364,0.852636, maf-5-some-pop,maf-5-all-pops 613 chr1 3795515 3795516 rs57517757 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3924.000000,1084.000000, 0.783546,0.216454, maf-5-some-pop,maf-5-all-pops 613 chr1 3795665 3795666 rs12027139 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4261.000000,747.000000, 0.850839,0.149161, maf-5-some-pop,maf-5-all-pops 613 chr1 3795716 3795717 rs12027929 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 738.000000,4270.000000, 0.147364,0.852636, maf-5-some-pop,maf-5-all-pops 613 chr1 3795933 3795934 rs12027244 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4312.000000,696.000000, 0.861022,0.138978, maf-5-some-pop 613 chr1 3796021 3796022 rs12028018 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 924.000000,4084.000000, 0.184505,0.815495, maf-5-some-pop,maf-5-all-pops 613 chr1 3796134 3796135 rs6675754 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3842.000000,1166.000000, 0.767173,0.232827, maf-5-some-pop,maf-5-all-pops 613 chr1 3796151 3796152 rs56070860 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3872.000000,1136.000000, 0.773163,0.226837, maf-5-some-pop,maf-5-all-pops 613 chr1 3796236 3796237 rs189257248 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4908.000000,100.000000, 0.980032,0.019968, 613 chr1 3796356 3796357 rs78804074 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop,maf-5-all-pops 613 chr1 3796541 3796542 rs12071660 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2012.000000,2996.000000, 0.401757,0.598243, maf-5-some-pop,maf-5-all-pops 613 chr1 3796644 3796645 rs6666303 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop,maf-5-all-pops 613 chr1 3796693 3796694 rs6678859 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop,maf-5-all-pops 613 chr1 3796710 3796711 rs6678866 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop,maf-5-all-pops 613 chr1 3796755 3796756 rs12038647 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop,maf-5-all-pops 613 chr1 3796761 3796762 rs111365188 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4785.000000,223.000000, 0.955471,0.044529, maf-5-some-pop,maf-5-all-pops 613 chr1 3797118 3797119 rs112834473 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, maf-5-some-pop,maf-5-all-pops 613 chr1 3797124 3797125 rs35259658 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop,maf-5-all-pops 613 chr1 3797218 3797219 rs4074710 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1794.000000,3214.000000, 0.358227,0.641773, maf-5-some-pop,maf-5-all-pops 613 chr1 3797308 3797309 rs61768959 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop,maf-5-all-pops 613 chr1 3797394 3797395 rs12725173 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4086.000000,922.000000, 0.815895,0.184105, maf-5-some-pop,maf-5-all-pops 613 chr1 3797476 3797477 rs7538222 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,TISHKOFF,WI_SSAHASNP, 2 G,T, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop,maf-5-all-pops 613 chr1 3797632 3797633 rs12039565 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop,maf-5-all-pops 613 chr1 3797677 3797678 rs12029890 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 924.000000,4084.000000, 0.184505,0.815495, maf-5-some-pop,maf-5-all-pops 613 chr1 3797918 3797919 rs116294018 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,EVA-GONL,ILLUMINA, 2 C,T, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 613 chr1 3797963 3797964 rs12039666 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 4785.000000,223.000000, 0.955471,0.044529, maf-5-some-pop 613 chr1 3798018 3798019 rs76337218 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 206.000000,4802.000000, 0.041134,0.958866, maf-5-some-pop,maf-5-all-pops 613 chr1 3798072 3798073 rs80228892 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4843.000000,165.000000, 0.967053,0.032947, 613 chr1 3798198 3798198 rs538948122 0 + - - -/GGGAGGCCAAGGTC genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,SSIP, 2 -,GGGAGGCCAAGGTC, 4659.000000,349.000000, 0.930312,0.069688, 613 chr1 3798237 3798238 rs143484146 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 613 chr1 3798305 3798306 rs71503074 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4267.000000,741.000000, 0.852037,0.147963, 613 chr1 3798338 3798339 rs71503075 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4314.000000,694.000000, 0.861422,0.138578, 613 chr1 3798374 3798375 rs139014401 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, 613 chr1 3798399 3798400 rs12084944 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2983.000000,2025.000000, 0.595647,0.404353, 613 chr1 3798433 3798434 rs77630554 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,BL,BUSHMAN,GMI,SSMP, 2 -,A, 2404.000000,2604.000000, 0.480032,0.519968, 613 chr1 3798600 3798600 rs140958443 0 + - - -/AAT genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER, 2 -,AAT, 2729.000000,2279.000000, 0.544928,0.455072, 613 chr1 3798673 3798674 rs12030906 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3087.000000,1921.000000, 0.616414,0.383586, maf-5-some-pop,maf-5-all-pops 613 chr1 3798806 3798806 rs34172576 0 + - - -/T genomic insertion unknown 0 0 intron between 1 11 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 2705.000000,2303.000000, 0.540136,0.459864, 613 chr1 3798880 3798881 rs113072806 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 613 chr1 3798983 3798984 rs144266924 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 613 chr1 3799084 3799085 rs12564320 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 142.000000,4866.000000, 0.028355,0.971645, 613 chr1 3799125 3799126 rs76906854 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1126.000000,3882.000000, 0.224840,0.775160, 613 chr1 3799251 3799252 rs12075759 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 570.000000,4438.000000, 0.113818,0.886182, maf-5-some-pop 613 chr1 3799568 3799571 rs200251035 0 + TTT TTT -/TTT genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 -,TTT, 1480.000000,3528.000000, 0.295527,0.704473, 613 chr1 3799628 3799629 rs149907545 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 613 chr1 3800053 3800054 rs12086722 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SC_SNP, 2 C,G, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 613 chr1 3800241 3800242 rs3205087 0 + A A A/G genomic single unknown 0 0 coding-synon,ncRNA exact 1 25 1000GENOMES,ABI,APPLERA_GI,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3226.000000,1782.000000, 0.644169,0.355831, maf-5-some-pop,maf-5-all-pops 613 chr1 3800479 3800480 rs7555538 0 + G G G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 12 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3227.000000,1781.000000, 0.644369,0.355631, maf-5-some-pop,maf-5-all-pops 614 chr1 3801140 3801141 rs45603135 0 + T T G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 G,T, 373.000000,4635.000000, 0.074481,0.925519, maf-5-some-pop,maf-5-all-pops 614 chr1 3801246 3801247 rs10909817 0 + T T G/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 3314.000000,1694.000000, 0.661741,0.338259, 614 chr1 3801319 3801320 rs45463695 0 + A A A/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 A,T, 4031.000000,977.000000, 0.804912,0.195088, 614 chr1 3801610 3801611 rs114196787 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB, 2 C,T, 59.000000,4949.000000, 0.011781,0.988219, 614 chr1 3801827 3801828 rs10909818 0 + G G A/G genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 14 1000GENOMES,ABI,AFFY,BGI,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 469.000000,4539.000000, 0.093650,0.906350, maf-5-some-pop 614 chr1 3801972 3801973 rs7551237 0 + T T C/T genomic single unknown 0 0 ncRNA,untranslated-3 exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop,maf-5-all-pops 614 chr1 3802017 3802018 rs41307043 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,T, 331.000000,4677.000000, 0.066094,0.933906, maf-5-some-pop,maf-5-all-pops 614 chr1 3802391 3802392 rs72849313 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA, 2 A,G, 4923.000000,85.000000, 0.983027,0.016973, 614 chr1 3802654 3802655 rs11583347 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 946.000000,4062.000000, 0.188898,0.811102, maf-5-some-pop,maf-5-all-pops 614 chr1 3802770 3802771 rs11584721 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 744.000000,4264.000000, 0.148562,0.851438, maf-5-some-pop 614 chr1 3802810 3802811 rs112726072 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, 614 chr1 3802868 3802869 rs74608314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 614 chr1 3802899 3802900 rs9786975 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,G, 572.000000,4436.000000, 0.114217,0.885783, maf-5-some-pop,maf-5-all-pops 614 chr1 3803060 3803061 rs111915346 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop 614 chr1 3803277 3803278 rs12073955 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 A,G, 381.000000,4627.000000, 0.076078,0.923922, maf-5-some-pop,maf-5-all-pops 614 chr1 3803458 3803459 rs78780784 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 614 chr1 3803700 3803701 rs12136187 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop,maf-5-all-pops 614 chr1 3803941 3803942 rs141671597 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 138.000000,4870.000000, 0.027556,0.972444, 614 chr1 3804016 3804017 rs7540944 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 G,T, 974.000000,4034.000000, 0.194489,0.805511, maf-5-some-pop,maf-5-all-pops 614 chr1 3804191 3804194 rs201243345 0 + TTA TTA -/TTA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TTA, 51.000000,4957.000000, 0.010184,0.989816, 614 chr1 3804542 3804543 rs116703176 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 614 chr1 3804682 3804683 rs12753572 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3730.000000,1278.000000, 0.744808,0.255192, maf-5-some-pop,maf-5-all-pops 614 chr1 3804711 3804712 rs75067058 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop,maf-5-all-pops 614 chr1 3804747 3804748 rs6424061 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop 614 chr1 3804911 3804912 rs75841479 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 614 chr1 3805020 3805021 rs112913458 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop 614 chr1 3805097 3805098 rs7530189 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4196.000000,812.000000, 0.837859,0.162141, maf-5-some-pop 614 chr1 3805197 3805198 rs113719135 0 + T T C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, 614 chr1 3805254 3805255 rs7544191 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 11 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3923.000000,1085.000000, 0.783347,0.216653, maf-5-some-pop 614 chr1 3805439 3805440 rs6678851 0 + C C C/T genomic single unknown 0 0 intron,near-gene-3 exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4282.000000,726.000000, 0.855032,0.144968, 614 chr1 3806073 3806074 rs4075974 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3394.000000,1614.000000, 0.677716,0.322284, 614 chr1 3806334 3806335 rs10797351 0 + G G G/T genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4607.000000,401.000000, 0.919928,0.080072, maf-5-some-pop 614 chr1 3806357 3806358 rs10909819 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 727.000000,4281.000000, 0.145168,0.854832, maf-5-some-pop,maf-5-all-pops 614 chr1 3806547 3806548 rs61737469 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 6 1000GENOMES,CORNELL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop 614 chr1 3806622 3806623 rs11809187 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,ABI,APPLERA_GI,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 614 chr1 3806642 3806643 rs4520357 0 + T T A/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SI_EXO,SSMP,TISHKOFF, 2 A,T, 2111.000000,2897.000000, 0.421526,0.578474, maf-5-some-pop,maf-5-all-pops 614 chr1 3806818 3806819 rs35933963 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop,maf-5-all-pops 614 chr1 3806972 3806973 rs12073945 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop 614 chr1 3807121 3807122 rs7513321 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PJP,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 885.000000,4123.000000, 0.176717,0.823283, maf-5-some-pop 614 chr1 3807257 3807258 rs12036962 0 + G G C/G genomic single unknown 0 0 missense exact 1 13 1000GENOMES,ABI,AFFY,CLINSEQ_SNP,ENSEMBL,EXOME_CHIP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP, 2 C,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop 614 chr1 3807387 3807388 rs4131373 0 + G G A/G genomic single unknown 0 0 coding-synon exact 1 21 1000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 732.000000,4276.000000, 0.146166,0.853834, maf-5-some-pop 614 chr1 3807449 3807450 rs10909820 0 + C C A/C genomic single unknown 0 0 missense exact 1 16 1000GENOMES,ABI,AFFY,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,PERLEGEN,SC_SNP,SEATTLESEQ,SSMP, 2 A,C, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop 614 chr1 3807748 3807749 rs74530517 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop,maf-5-all-pops 614 chr1 3807813 3807814 rs149064323 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,LUNTER,SSMP,TISHKOFF,WARNICH_LAB, 2 -,C, 155.000000,4853.000000, 0.030950,0.969050, 614 chr1 3807892 3807893 rs12044200 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4730.000000,278.000000, 0.944489,0.055511, maf-5-some-pop,maf-5-all-pops 614 chr1 3808170 3808171 rs6701422 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 3580.000000,1428.000000, 0.714856,0.285144, maf-5-some-pop,maf-5-all-pops 614 chr1 3808193 3808194 rs10909821 0 + A A A/G genomic single unknown 0 0 intron,missense exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4607.000000,401.000000, 0.919928,0.080072, maf-5-some-pop,maf-5-all-pops 614 chr1 3808361 3808362 rs4446914 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1760.000000,3248.000000, 0.351438,0.648562, maf-5-some-pop,maf-5-all-pops 614 chr1 3808636 3808637 rs113087963 0 + C C A/C genomic single by-cluster,by-frequency 0.5 0 intron exact 1 1 COMPLETE_GENOMICS, 2 A,C, 9.000000,9.000000, 0.500000,0.500000, 614 chr1 3808744 3808745 rs113439586 0 + G G A/G genomic single by-cluster,by-frequency 0.5 0 intron exact 1 1 COMPLETE_GENOMICS, 2 A,G, 5.000000,5.000000, 0.500000,0.500000, 614 chr1 3809096 3809097 rs12757292 0 + A A A/C genomic single by-cluster,by-frequency 0.5 0 intron exact 1 6 COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,C, 5.000000,5.000000, 0.500000,0.500000, 614 chr1 3809109 3809110 rs59232452 0 + C C A/C genomic single by-cluster,by-frequency 0.5 0 intron exact 1 6 COMPLETE_GENOMICS,ENSEMBL,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 A,C, 5.000000,5.000000, 0.500000,0.500000, 614 chr1 3809188 3809189 rs186667865 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,C, 164.000000,4844.000000, 0.032748,0.967252, 614 chr1 3809226 3809227 rs113598275 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 614 chr1 3809298 3809299 rs79308453 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB, 2 A,T, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop,maf-5-all-pops 614 chr1 3809325 3809326 rs72849326 0 + C C C/T genomic single unknown 0 0 intron,untranslated-5 exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop,maf-5-all-pops 614 chr1 3809422 3809423 rs11807227 0 + G G A/G genomic single unknown 0 0 intron,untranslated-5 exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,NHLBI-ESP,SSMP,TISHKOFF, 2 A,G, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop,maf-5-all-pops 614 chr1 3809527 3809528 rs35157037 0 + C C C/T genomic single unknown 0 0 coding-synon,untranslated-5 exact 1 10 1000GENOMES,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP,TISHKOFF, 2 C,T, 4852.000000,156.000000, 0.968850,0.031150, maf-5-some-pop 614 chr1 3810197 3810198 rs12046376 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4730.000000,278.000000, 0.944489,0.055511, maf-5-some-pop,maf-5-all-pops 614 chr1 3810279 3810280 rs72849327 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop 614 chr1 3810385 3810386 rs4568776 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4278.000000,730.000000, 0.854233,0.145767, maf-5-some-pop,maf-5-all-pops 614 chr1 3810505 3810506 rs78397137 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 614 chr1 3810824 3810825 rs115924488 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 614 chr1 3810888 3810889 rs12094819 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4144.000000,864.000000, 0.827476,0.172524, maf-5-some-pop 614 chr1 3810908 3810909 rs12094822 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4197.000000,811.000000, 0.838059,0.161941, 614 chr1 3810960 3810961 rs540627729 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 614 chr1 3811059 3811060 rs145716888 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4854.000000,154.000000, 0.969249,0.030751, 614 chr1 3811170 3811170 rs56302416 0 + - - -/A genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BILGI_BIOE,HUMANGENOME_JCVI,PJP,SSMP, 2 -,A, 3024.000000,1984.000000, 0.603834,0.396166, 614 chr1 3811202 3811203 rs7515869 0 + A A A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1620.000000,3388.000000, 0.323482,0.676518, maf-5-some-pop,maf-5-all-pops 614 chr1 3811367 3811368 rs6674160 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 730.000000,4278.000000, 0.145767,0.854233, maf-5-some-pop,maf-5-all-pops 614 chr1 3811789 3811790 rs12085743 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 G,T, 4044.000000,964.000000, 0.807508,0.192492, maf-5-some-pop 614 chr1 3811809 3811810 rs12082157 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 964.000000,4044.000000, 0.192492,0.807508, maf-5-some-pop 614 chr1 3812104 3812105 rs10909822 0 + A A A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,CSHL-HAPMAP,ILLUMINA,SC_SNP,SI_EXO,SSMP, 2 A,C, 4344.000000,664.000000, 0.867412,0.132588, 614 chr1 3812122 3812123 rs200290675 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,C, 867.000000,4141.000000, 0.173123,0.826877, 614 chr1 3812433 3812434 rs74632069 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 614 chr1 3812607 3812608 rs117832892 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 614 chr1 3812660 3812661 rs12097610 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop 614 chr1 3812706 3812707 rs76363675 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop 614 chr1 3812709 3812710 rs10797352 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2111.000000,2897.000000, 0.421526,0.578474, maf-5-some-pop,maf-5-all-pops 614 chr1 3812916 3812917 rs144862200 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 614 chr1 3812919 3812920 rs75585322 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 614 chr1 3813242 3813243 rs7552665 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop 614 chr1 3814289 3814290 rs10797354 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3389.000000,1619.000000, 0.676717,0.323283, 614 chr1 3814360 3814361 rs61124252 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 730.000000,4278.000000, 0.145767,0.854233, 614 chr1 3814659 3814660 rs10909823 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop,maf-5-all-pops 614 chr1 3814741 3814742 rs6658198 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3389.000000,1619.000000, 0.676717,0.323283, maf-5-some-pop,maf-5-all-pops 614 chr1 3814882 3814883 rs12092962 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3976.000000,1032.000000, 0.793930,0.206070, maf-5-some-pop,maf-5-all-pops 614 chr1 3814934 3814935 rs111228447 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 154.000000,4854.000000, 0.030751,0.969249, 614 chr1 3814993 3814994 rs12093013 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3987.000000,1021.000000, 0.796126,0.203874, 614 chr1 3815115 3815116 rs114642882 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 6.000000,114.000000, 0.050000,0.950000, maf-5-some-pop,maf-5-all-pops 614 chr1 3815293 3815294 rs78802412 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 614 chr1 3815350 3815350 rs58663935 0 + - - -/AAAG genomic insertion unknown 0 0 intron,near-gene-5 between 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,TISHKOFF, 2 -,AAAG, 3919.000000,1089.000000, 0.782548,0.217452, 614 chr1 3815620 3815621 rs138047880 0 + A A -/A genomic deletion unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,SSMP, 2 -,A, 1019.000000,3989.000000, 0.203474,0.796526, 614 chr1 3815679 3815680 rs78729430 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop,maf-5-all-pops 614 chr1 3815849 3815850 rs10909824 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1076.000000,3932.000000, 0.214856,0.785144, maf-5-some-pop 614 chr1 3816031 3816032 rs78881134 0 + C C A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 1 1000GENOMES, 2 A,C, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 614 chr1 3816054 3816074 rs113724249 0 + CAGACACTGGCACCCCCCTT CAGACACTGGCACCCCCCTT -/CAGACACTGGCACCCCCCTT genomic deletion unknown 0 0 intron,near-gene-5 range 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,CAGACACTGGCACCCCCCTT, 1060.000000,3948.000000, 0.211661,0.788339, 614 chr1 3816507 3816508 rs35131135 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2111.000000,2897.000000, 0.421526,0.578474, maf-5-some-pop,maf-5-all-pops 614 chr1 3816597 3816598 rs112821673 0 + A A A/C genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 A,C, 3929.000000,1079.000000, 0.784545,0.215455, maf-5-some-pop 614 chr1 3816603 3816604 rs112886428 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 800.000000,4208.000000, 0.159744,0.840256, maf-5-some-pop,maf-5-all-pops 614 chr1 3816682 3816683 rs113529609 0 + A A A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 A,G, 3931.000000,1077.000000, 0.784944,0.215056, maf-5-some-pop,maf-5-all-pops 614 chr1 3816853 3816854 rs61770363 0 + G G A/G genomic single unknown 0 0 near-gene-5,untranslated-5 exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 743.000000,4265.000000, 0.148363,0.851637, maf-5-some-pop,maf-5-all-pops 614 chr1 3816907 3816908 rs12095854 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SC_SNP, 2 A,C, 112.000000,4896.000000, 0.022364,0.977636, 614 chr1 3816909 3816910 rs12095856 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SC_SNP, 2 A,C, 112.000000,4896.000000, 0.022364,0.977636, 614 chr1 3816949 3816950 rs75689004 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop 614 chr1 3817092 3817092 rs139505893 0 + - - -/T genomic insertion unknown 0 0 near-gene-5,ncRNA between 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,T, 4855.000000,153.000000, 0.969449,0.030551, 614 chr1 3817251 3817252 rs12741752 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 271.000000,4737.000000, 0.054113,0.945887, maf-5-some-pop 614 chr1 3817259 3817260 rs10909825 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop 614 chr1 3817338 3817338 rs141329498 0 + - - -/T genomic insertion unknown 0 0 intron,near-gene-5 between 1 5 1000GENOMES,LUNTER,SSIP,SSMP,TISHKOFF, 2 -,T, 4617.000000,391.000000, 0.921925,0.078075, 614 chr1 3817389 3817390 rs28623548 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,BCMHGSC_JDW,BGI,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 4407.000000,601.000000, 0.879992,0.120008, maf-5-some-pop,maf-5-all-pops 614 chr1 3817538 3817539 rs35759189 0 + G G -/G genomic deletion unknown 0 0 intron,near-gene-5 exact 1 9 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 955.000000,4053.000000, 0.190695,0.809305, 614 chr1 3817604 3817605 rs12097125 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4287.000000,721.000000, 0.856030,0.143970, maf-5-some-pop 614 chr1 3817849 3817850 rs59731576 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 4 1000GENOMES,HGSV,SSMP,TISHKOFF, 2 C,T, 4834.000000,174.000000, 0.965256,0.034744, maf-5-some-pop,maf-5-all-pops 614 chr1 3817970 3817971 rs11811801 0 + C C C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 13 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop,maf-5-all-pops 614 chr1 3818037 3818038 rs12041728 0 + G G G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 G,T, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop,maf-5-all-pops 614 chr1 3818098 3818099 rs72849340 0 + T T G/T genomic single unknown 0 0 intron,near-gene-5 exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 1077.000000,3931.000000, 0.215056,0.784944, maf-5-some-pop 614 chr1 3818134 3818138 rs200148559 0 + TTTG TTTG -/TTTG genomic deletion unknown 0 0 intron,near-gene-5 range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,TTTG, 237.000000,4771.000000, 0.047324,0.952676, 614 chr1 3818381 3818382 rs140004086 0 + G G A/G genomic single unknown 0 0 intron,near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, 614 chr1 3818443 3818443 rs111746656 0 + - - -/TTCTTTTCTT genomic insertion unknown 0 0 intron,near-gene-5 between 1 4 1000GENOMES,BILGI_BIOE,BUSHMAN,LUNTER, 2 -,TTCTTTTCTT, 1909.000000,3099.000000, 0.381190,0.618810, 614 chr1 3818743 3818744 rs10797355 0 + T T C/T genomic single unknown 0 0 intron,near-gene-5 exact 1 10 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 1744.000000,3264.000000, 0.348243,0.651757, maf-5-some-pop,maf-5-all-pops 614 chr1 3819244 3819245 rs112974178 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 614 chr1 3819323 3819324 rs6672335 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3088.000000,1920.000000, 0.616613,0.383387, maf-5-some-pop,maf-5-all-pops 614 chr1 3819335 3819336 rs116818039 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 65.000000,4943.000000, 0.012979,0.987021, 614 chr1 3819417 3819418 rs76703445 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 614 chr1 3819444 3819445 rs187314673 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4950.000000,58.000000, 0.988419,0.011582, 614 chr1 3819570 3819571 rs150136419 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, 614 chr1 3820015 3820016 rs12139857 0 + G G C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,G, 681.000000,4327.000000, 0.135982,0.864018, maf-5-some-pop,maf-5-all-pops 614 chr1 3820206 3820207 rs77647183 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 614 chr1 3820485 3820486 rs35329253 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,G, 4087.000000,921.000000, 0.816094,0.183906, maf-5-some-pop,maf-5-all-pops 614 chr1 3820491 3820492 rs114171918 0 + G G C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 82.000000,4926.000000, 0.016374,0.983626, maf-5-some-pop,maf-5-all-pops 614 chr1 3820674 3820675 rs10909829 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 614 chr1 3820933 3820934 rs200840442 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 -,C, 65.000000,4943.000000, 0.012979,0.987021, 614 chr1 3821012 3821013 rs115158549 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 614 chr1 3821035 3821036 rs142206202 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 614 chr1 3821215 3821216 rs6687869 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1827.000000,3181.000000, 0.364816,0.635184, maf-5-some-pop,maf-5-all-pops 614 chr1 3821311 3821312 rs12092253 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 C,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop,maf-5-all-pops 614 chr1 3821333 3821334 rs10797357 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3421.000000,1587.000000, 0.683107,0.316893, maf-5-some-pop,maf-5-all-pops 614 chr1 3821508 3821509 rs78208353 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 614 chr1 3821659 3821660 rs11589081 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 955.000000,4053.000000, 0.190695,0.809305, maf-5-some-pop,maf-5-all-pops 614 chr1 3822192 3822193 rs115076398 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 614 chr1 3822679 3822680 rs79856197 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 614 chr1 3822702 3822703 rs10909830 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3533.000000,1475.000000, 0.705471,0.294529, maf-5-some-pop,maf-5-all-pops 614 chr1 3822752 3822753 rs113996897 0 + G G A/G genomic single by-frequency,by-1000genomes 0.001834 0.030229 intron exact 1 1 1000GENOMES, 2 A,G, 2.000000,116.000000, 0.016949,0.983051, 614 chr1 3823149 3823150 rs79348100 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 614 chr1 3823262 3823263 rs74048347 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 614 chr1 3823394 3823395 rs28973022 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4050.000000,958.000000, 0.808706,0.191294, maf-5-some-pop,maf-5-all-pops 614 chr1 3823430 3823431 rs77084525 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 614 chr1 3823473 3823474 rs149747536 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 614 chr1 3823803 3823804 rs76419011 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4676.000000,332.000000, 0.933706,0.066294, maf-5-some-pop,maf-5-all-pops 614 chr1 3824290 3824291 rs76331297 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 614 chr1 3824482 3824483 rs151146184 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 614 chr1 3824655 3824656 rs78783957 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 614 chr1 3825028 3825029 rs538730351 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4706.000000,302.000000, 0.939696,0.060304, 614 chr1 3825066 3825070 rs111248066 0 + AGTA AGTA -/AGTA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,BUSHMAN, 2 -,AGTA, 51.000000,4957.000000, 0.010184,0.989816, 614 chr1 3825216 3825217 rs75100690 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 614 chr1 3825349 3825350 rs113427994 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, maf-5-some-pop,maf-5-all-pops 614 chr1 3825451 3825452 rs145097490 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 614 chr1 3825524 3825525 rs35383955 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3734.000000,1274.000000, 0.745607,0.254393, maf-5-some-pop,maf-5-all-pops 614 chr1 3825592 3825593 rs72849353 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop 614 chr1 3825710 3825711 rs35031681 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,BCM-HGSC-SUB,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4685.000000,323.000000, 0.935503,0.064497, maf-5-some-pop,maf-5-all-pops 614 chr1 3826117 3826118 rs116824400 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 614 chr1 3826427 3826428 rs144710259 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 76.000000,4932.000000, 0.015176,0.984824, 614 chr1 3826625 3826626 rs35332894 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3328.000000,1680.000000, 0.664537,0.335463, maf-5-some-pop,maf-5-all-pops 614 chr1 3827057 3827058 rs180691668 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, 614 chr1 3827197 3827198 rs74716290 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop 614 chr1 3827379 3827380 rs80132346 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop,maf-5-all-pops 614 chr1 3827480 3827481 rs61770379 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3531.000000,1477.000000, 0.705072,0.294928, maf-5-some-pop,maf-5-all-pops 614 chr1 3827497 3827498 rs61770380 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop,maf-5-all-pops 614 chr1 3827580 3827581 rs75186451 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,maf-5-all-pops 614 chr1 3828446 3828447 rs80183713 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4776.000000,232.000000, 0.953674,0.046326, maf-5-some-pop,maf-5-all-pops 614 chr1 3828447 3828448 rs35413097 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 1275.000000,3733.000000, 0.254593,0.745407, maf-5-some-pop,maf-5-all-pops 614 chr1 3828663 3828664 rs78715604 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 614 chr1 3828753 3828754 rs35620403 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1523.000000,3485.000000, 0.304113,0.695887, maf-5-some-pop,maf-5-all-pops 614 chr1 3828901 3828902 rs77851199 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop,maf-5-all-pops 614 chr1 3829159 3829160 rs34825671 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3331.000000,1677.000000, 0.665136,0.334864, maf-5-some-pop,maf-5-all-pops 614 chr1 3829243 3829244 rs35836251 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 921.000000,4087.000000, 0.183906,0.816094, maf-5-some-pop,maf-5-all-pops 614 chr1 3829417 3829418 rs35368826 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1936.000000,3072.000000, 0.386581,0.613419, maf-5-some-pop,maf-5-all-pops 614 chr1 3829613 3829614 rs35583447 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1435.000000,3573.000000, 0.286542,0.713458, maf-5-some-pop,maf-5-all-pops 614 chr1 3830040 3830041 rs34284135 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 2720.000000,2288.000000, 0.543131,0.456869, maf-5-some-pop,maf-5-all-pops 614 chr1 3830091 3830092 rs77967445 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,TISHKOFF, 2 A,G, 349.000000,4659.000000, 0.069688,0.930312, maf-5-some-pop,maf-5-all-pops 614 chr1 3830231 3830231 rs528141149 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 3609.000000,1399.000000, 0.720647,0.279353, 614 chr1 3830742 3830743 rs111854503 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 614 chr1 3831045 3831046 rs76079542 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop 614 chr1 3831102 3831103 rs35355307 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1619.000000,3389.000000, 0.323283,0.676717, maf-5-some-pop,maf-5-all-pops 614 chr1 3831162 3831163 rs115350581 0 + G G C/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 C,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 614 chr1 3831231 3831232 rs35241263 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1287.000000,3721.000000, 0.256989,0.743011, maf-5-some-pop 614 chr1 3831239 3831240 rs114272920 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop,maf-5-all-pops 614 chr1 3831335 3831336 rs78880082 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 614 chr1 3831441 3831442 rs72849358 0 + C C A/C genomic single unknown 0 0 ncRNA exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 A,C, 389.000000,4619.000000, 0.077676,0.922324, maf-5-some-pop 614 chr1 3831555 3831556 rs34803434 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop 614 chr1 3831749 3831750 rs75380240 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop,maf-5-all-pops 614 chr1 3832469 3832470 rs76308797 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop,maf-5-all-pops 614 chr1 3832602 3832603 rs74604895 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop,maf-5-all-pops 614 chr1 3832849 3832850 rs150209639 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 614 chr1 3833106 3833107 rs75692068 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 614 chr1 3833192 3833193 rs61770387 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4353.000000,655.000000, 0.869209,0.130791, maf-5-some-pop,maf-5-all-pops 614 chr1 3833320 3833321 rs61770388 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1888.000000,3120.000000, 0.376997,0.623003, maf-5-some-pop,maf-5-all-pops 614 chr1 3833653 3833654 rs111655943 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 614 chr1 3833877 3833877 rs145187421 0 + - - -/A/AA/AAAA genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 4 -,A,AA,AAAA, 3715.000000,1236.000000,37.000000,20.000000, 0.741813,0.246805,0.007388,0.003994, rs-cluster-nonoverlapping-alleles 614 chr1 3834482 3834483 rs117109066 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 614 chr1 3834490 3834491 rs114798406 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 614 chr1 3834569 3834570 rs115111253 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 614 chr1 3834702 3834703 rs114171881 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 614 chr1 3834763 3834764 rs72640980 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop 614 chr1 3834952 3834953 rs113533535 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4535.000000,473.000000, 0.905551,0.094449, maf-5-some-pop 614 chr1 3835092 3835093 rs145881799 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BL,GMI, 2 C,T, 1921.000000,3087.000000, 0.383586,0.616414, 614 chr1 3835102 3835103 rs146888557 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,TISHKOFF, 2 C,T, 203.000000,4805.000000, 0.040535,0.959465, 614 chr1 3835103 3835104 rs139397707 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 115.000000,4893.000000, 0.022963,0.977037, 614 chr1 3835118 3835119 rs61770390 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2137.000000,2871.000000, 0.426717,0.573283, 614 chr1 3835127 3835128 rs35323681 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, 614 chr1 3835170 3835171 rs112996520 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4482.000000,526.000000, 0.894968,0.105032, 614 chr1 3835190 3835191 rs72640981 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF, 2 A,C, 1069.000000,3939.000000, 0.213458,0.786542, maf-5-some-pop 614 chr1 3835386 3835387 rs78263616 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop,maf-5-all-pops 614 chr1 3835428 3835429 rs66859195 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 502.000000,4506.000000, 0.100240,0.899760, maf-5-some-pop 614 chr1 3835463 3835464 rs61770392 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 2676.000000,2332.000000, 0.534345,0.465655, maf-5-some-pop,maf-5-all-pops 614 chr1 3835538 3835539 rs78666115 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop,maf-5-all-pops 614 chr1 3835766 3835767 rs72849363 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB, 2 C,T, 150.000000,4858.000000, 0.029952,0.970048, maf-5-some-pop,maf-5-all-pops 614 chr1 3835788 3835789 rs34283457 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3517.000000,1491.000000, 0.702276,0.297724, maf-5-some-pop,maf-5-all-pops 614 chr1 3835840 3835841 rs114621797 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, 614 chr1 3835923 3835924 rs111999093 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 614 chr1 3835966 3835967 rs80294302 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 782.000000,4226.000000, 0.156150,0.843850, maf-5-some-pop,maf-5-all-pops 614 chr1 3836094 3836095 rs74986126 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4793.000000,215.000000, 0.957069,0.042931, maf-5-some-pop,maf-5-all-pops 614 chr1 3836299 3836300 rs72849365 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 614 chr1 3836598 3836599 rs138647098 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,C, 317.000000,4691.000000, 0.063299,0.936701, 614 chr1 3836641 3836642 rs77730699 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4733.000000,275.000000, 0.945088,0.054912, 614 chr1 3836675 3836676 rs185877906 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, 614 chr1 3836993 3836994 rs111063492 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCM-HGSC-SUB,EVA-GONL, 2 A,C, 307.000000,4701.000000, 0.061302,0.938698, 614 chr1 3837074 3837076 rs528884763 0 + TC TC -/TC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TC, 330.000000,4678.000000, 0.065895,0.934105, 614 chr1 3837415 3837416 rs35315338 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4688.000000,320.000000, 0.936102,0.063898, maf-5-some-pop 614 chr1 3837460 3837461 rs72640984 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop,maf-5-all-pops 614 chr1 3837744 3837744 rs137901447 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,G, 4906.000000,102.000000, 0.979633,0.020367, 614 chr1 3837828 3837829 rs72849368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 614 chr1 3837861 3837862 rs553819966 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 92.000000,4916.000000, 0.018371,0.981629, 614 chr1 3838221 3838222 rs111276937 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 614 chr1 3838246 3838247 rs111412332 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 G,T, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 614 chr1 3838329 3838330 rs200839565 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,A, 102.000000,4906.000000, 0.020367,0.979633, 614 chr1 3838337 3838338 rs77950739 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,G, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 614 chr1 3838399 3838400 rs36109325 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4412.000000,596.000000, 0.880990,0.119010, maf-5-some-pop,maf-5-all-pops 614 chr1 3838425 3838426 rs72849370 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop 614 chr1 3838484 3838485 rs72849373 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 614 chr1 3838546 3838547 rs74048371 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 614 chr1 3838730 3838731 rs35965334 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 614 chr1 3838913 3838914 rs79811232 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop,maf-5-all-pops 614 chr1 3839079 3839080 rs36197555 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 614 chr1 3839180 3839180 rs35543753 0 + - - -/GTTT genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,ABI,EVA-GONL,LUNTER, 2 -,GTTT, 4706.000000,302.000000, 0.939696,0.060304, 614 chr1 3839504 3839505 rs35357981 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 614 chr1 3839520 3839521 rs34851205 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop,maf-5-all-pops 614 chr1 3839727 3839728 rs112851425 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 614 chr1 3839857 3839858 rs72849377 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 614 chr1 3840282 3840283 rs77226598 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 614 chr1 3840448 3840449 rs35025175 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4476.000000,532.000000, 0.893770,0.106230, maf-5-some-pop,maf-5-all-pops 614 chr1 3840644 3840645 rs35265992 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3124.000000,1884.000000, 0.623802,0.376198, maf-5-some-pop,maf-5-all-pops 614 chr1 3840684 3840685 rs74465348 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 221.000000,4787.000000, 0.044129,0.955871, maf-5-some-pop,maf-5-all-pops 614 chr1 3840695 3840696 rs74048372 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,PJP, 2 A,G, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 614 chr1 3840708 3840709 rs36022479 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4593.000000,415.000000, 0.917133,0.082867, maf-5-some-pop,maf-5-all-pops 614 chr1 3840738 3840739 rs35882848 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 G,T, 496.000000,4512.000000, 0.099041,0.900958, maf-5-some-pop 614 chr1 3840877 3840878 rs35974482 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 1230.000000,3778.000000, 0.245607,0.754393, maf-5-some-pop,maf-5-all-pops 614 chr1 3841027 3841028 rs35314156 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 2181.000000,2827.000000, 0.435503,0.564497, maf-5-some-pop,maf-5-all-pops 614 chr1 3841489 3841490 rs151062680 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 614 chr1 3841864 3841865 rs114326162 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 614 chr1 3841929 3841930 rs34442114 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 365.000000,4643.000000, 0.072883,0.927117, maf-5-some-pop,maf-5-all-pops 614 chr1 3842111 3842112 rs34835780 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3091.000000,1917.000000, 0.617212,0.382788, maf-5-some-pop,maf-5-all-pops 614 chr1 3843055 3843056 rs77857932 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 614 chr1 3843101 3843102 rs77907745 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, maf-5-some-pop,maf-5-all-pops 614 chr1 3843202 3843202 rs149274791 0 + - - -/CCAC genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CCAC, 2960.000000,2048.000000, 0.591054,0.408946, 614 chr1 3843264 3843265 rs75306138 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB, 2 A,C, 4821.000000,187.000000, 0.962660,0.037340, maf-5-some-pop,maf-5-all-pops 614 chr1 3843528 3843532 rs572960990 0 + ATCT ATCT -/ATCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,ATCT, 174.000000,4834.000000, 0.034744,0.965256, 614 chr1 3843639 3843642 rs562443375 0 + TAT TAT -/TAT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TAT, 59.000000,4949.000000, 0.011781,0.988219, 614 chr1 3843643 3843644 rs578260916 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 59.000000,4949.000000, 0.011781,0.988219, 614 chr1 3843658 3843662 rs527885162 0 + ATCT ATCT -/ATCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,ATCT, 655.000000,4353.000000, 0.130791,0.869209, 614 chr1 3843674 3843675 rs117537417 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,JMKIDD_LAB, 2 A,G, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop,maf-5-all-pops 614 chr1 3843701 3843705 rs200294766 0 + AATC AATC -/AATC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AATC, 206.000000,4802.000000, 0.041134,0.958866, 614 chr1 3843722 3843723 rs568936013 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 208.000000,4800.000000, 0.041533,0.958466, 614 chr1 3843874 3843878 rs369617466 0 + TCTA TCTA -/TCTA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,TCTA, 242.000000,4766.000000, 0.048323,0.951677, 614 chr1 3843878 3843878 rs538607674 0 + - - -/TCTA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TCTA, 4761.000000,247.000000, 0.950679,0.049321, 614 chr1 3844020 3844020 rs113893921 0 + - - -/ATCT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,ATCT, 2435.000000,2573.000000, 0.486222,0.513778, 614 chr1 3844021 3844021 rs533762792 0 + - - -/TCTG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TCTG, 4940.000000,68.000000, 0.986422,0.013578, 614 chr1 3844025 3844025 rs77860264 0 + - - -/TCTAATC genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BCMHGSC_JDW,GMI, 2 -,TCTAATC, 4454.000000,554.000000, 0.889377,0.110623, 614 chr1 3844026 3844026 rs573681154 0 + - - -/G/TCAG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 3 -,G,TCAG, 4386.000000,554.000000,68.000000, 0.875799,0.110623,0.013578, 614 chr1 3844357 3844358 rs115691900 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 614 chr1 3844603 3844604 rs75037339 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 614 chr1 3844612 3844613 rs75784984 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 614 chr1 3844753 3844754 rs115687139 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 614 chr1 3845066 3845067 rs138623508 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 84.000000,4924.000000, 0.016773,0.983227, 614 chr1 3845181 3845182 rs111877914 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 614 chr1 3845186 3845187 rs111214040 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 615 chr1 3995286 3995287 rs183507928 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 615 chr1 3995287 3995288 rs143325924 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,C, 1058.000000,3950.000000, 0.211262,0.788738, 615 chr1 3995340 3995341 rs147524386 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 615 chr1 3995643 3995644 rs80309618 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4762.000000,246.000000, 0.950879,0.049121, maf-5-some-pop 615 chr1 3995764 3995765 rs78395838 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop,maf-5-all-pops 615 chr1 3995771 3995772 rs72640988 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 444.000000,4564.000000, 0.088658,0.911342, maf-5-some-pop,maf-5-all-pops 615 chr1 3995905 3995906 rs61770398 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 815.000000,4193.000000, 0.162740,0.837260, maf-5-some-pop,maf-5-all-pops 615 chr1 3996074 3996075 rs34770924 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop 615 chr1 3996133 3996134 rs75063628 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop,maf-5-all-pops 615 chr1 3996245 3996246 rs34345080 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop 615 chr1 3996489 3996490 rs67479958 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 G,T, 3792.000000,1216.000000, 0.757188,0.242812, maf-5-some-pop,maf-5-all-pops 615 chr1 3996592 3996593 rs200405318 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,GMI, 2 -,A, 2949.000000,2059.000000, 0.588858,0.411142, 615 chr1 3996711 3996712 rs12023431 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 392.000000,4616.000000, 0.078275,0.921725, maf-5-some-pop 615 chr1 3996794 3996795 rs77119707 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 615 chr1 3996945 3996946 rs6695346 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 3322.000000,1686.000000, 0.663339,0.336661, maf-5-some-pop,maf-5-all-pops 615 chr1 3997019 3997019 rs111669085 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,T, 4837.000000,171.000000, 0.965855,0.034145, 615 chr1 3997514 3997515 rs7536236 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,WI_SSAHASNP, 2 C,T, 4772.000000,236.000000, 0.952875,0.047125, 615 chr1 3997586 3997587 rs115885994 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 238.000000,4770.000000, 0.047524,0.952476, maf-5-some-pop 615 chr1 3997700 3997701 rs150781352 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 238.000000,4770.000000, 0.047524,0.952476, 615 chr1 3997908 3997909 rs147560106 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 238.000000,4770.000000, 0.047524,0.952476, 615 chr1 3997990 3997991 rs117009886 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop,maf-5-all-pops 615 chr1 3997999 3998000 rs10915429 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 615 chr1 3998430 3998431 rs76878289 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop,maf-5-all-pops 615 chr1 3998580 3998581 rs12031934 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop,maf-5-all-pops 615 chr1 3998732 3998732 rs113047805 0 + - - -/TTGT genomic insertion unknown 0 0 near-gene-5 between 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,TTGT, 4918.000000,90.000000, 0.982029,0.017971, 615 chr1 3998890 3998891 rs74048376 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 235.000000,4773.000000, 0.046925,0.953075, maf-5-some-pop,maf-5-all-pops 615 chr1 3998907 3998908 rs80151641 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop,maf-5-all-pops 615 chr1 3999042 3999043 rs12029677 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop,maf-5-all-pops 615 chr1 3999591 3999592 rs12032899 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop 615 chr1 3999811 3999812 rs74588787 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 615 chr1 4000015 4000016 rs10159050 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 615 chr1 4000040 4000041 rs12405341 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 614.000000,4394.000000, 0.122604,0.877396, maf-5-some-pop 615 chr1 4000090 4000091 rs10157948 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 990.000000,4018.000000, 0.197684,0.802316, maf-5-some-pop 615 chr1 4000432 4000433 rs76332900 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,maf-5-all-pops 615 chr1 4000567 4000568 rs56775334 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 615 chr1 4000609 4000610 rs12405638 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 599.000000,4409.000000, 0.119609,0.880391, maf-5-some-pop,maf-5-all-pops 615 chr1 4000692 4000693 rs60487652 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,HGSV,ILLUMINA,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 615 chr1 4000830 4000831 rs115883817 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 615 chr1 4000956 4000957 rs61156287 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,BUSHMAN,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 593.000000,4415.000000, 0.118411,0.881589, maf-5-some-pop,maf-5-all-pops 615 chr1 4001334 4001335 rs72849387 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 615 chr1 4001463 4001464 rs35304605 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,G, 631.000000,4377.000000, 0.125998,0.874002, maf-5-some-pop,maf-5-all-pops 615 chr1 4001794 4001795 rs11804348 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK, 2 C,G, 4451.000000,557.000000, 0.888778,0.111222, maf-5-some-pop,maf-5-all-pops 615 chr1 4002097 4002098 rs34678432 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1091.000000,3917.000000, 0.217851,0.782149, maf-5-some-pop,maf-5-all-pops 615 chr1 4002125 4002126 rs7536132 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4038.000000,970.000000, 0.806310,0.193690, 615 chr1 4002257 4002257 rs564991222 0 + - - -/T genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,T, 2388.000000,2620.000000, 0.476837,0.523163, 615 chr1 4002349 4002350 rs7536323 0 + T T G/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 4024.000000,984.000000, 0.803514,0.196486, maf-5-some-pop 615 chr1 4002378 4002379 rs7538593 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4029.000000,979.000000, 0.804513,0.195487, 615 chr1 4002390 4002391 rs60379561 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 114.000000,4894.000000, 0.022764,0.977236, 615 chr1 4002497 4002498 rs7538691 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2817.000000,2191.000000, 0.562500,0.437500, maf-5-some-pop,maf-5-all-pops 615 chr1 4002599 4002600 rs28438555 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 772.000000,4236.000000, 0.154153,0.845847, maf-5-some-pop 615 chr1 4002645 4002646 rs12074787 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4609.000000,399.000000, 0.920327,0.079673, maf-5-some-pop,maf-5-all-pops 615 chr1 4002765 4002766 rs12073174 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2889.000000,2119.000000, 0.576877,0.423123, maf-5-some-pop,maf-5-all-pops 615 chr1 4002819 4002820 rs61770400 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4527.000000,481.000000, 0.903954,0.096046, maf-5-some-pop,maf-5-all-pops 615 chr1 4002831 4002832 rs12724233 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1120.000000,3888.000000, 0.223642,0.776358, maf-5-some-pop 615 chr1 4002953 4002954 rs72640991 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4583.000000,425.000000, 0.915136,0.084864, 615 chr1 4002957 4002958 rs10915568 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 1192.000000,3816.000000, 0.238019,0.761981, maf-5-some-pop,maf-5-all-pops 615 chr1 4003033 4003034 rs112836263 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 615 chr1 4003275 4003276 rs75558957 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, 615 chr1 4003283 4003284 rs7515173 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1183.000000,3825.000000, 0.236222,0.763778, maf-5-some-pop,maf-5-all-pops 615 chr1 4003295 4003296 rs116047005 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,maf-5-all-pops 615 chr1 4003893 4003894 rs12079672 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop 615 chr1 4003982 4003983 rs72849392 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 615 chr1 4004027 4004028 rs72640993 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop,maf-5-all-pops 615 chr1 4004036 4004037 rs12076404 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4081.000000,927.000000, 0.814896,0.185104, maf-5-some-pop,maf-5-all-pops 615 chr1 4004044 4004045 rs117476193 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4834.000000,174.000000, 0.965256,0.034744, 615 chr1 4004107 4004108 rs59573354 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,TISHKOFF, 2 C,T, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 615 chr1 4004249 4004250 rs11583257 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3471.000000,1537.000000, 0.693091,0.306909, maf-5-some-pop,maf-5-all-pops 615 chr1 4004261 4004262 rs72640998 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4269.000000,739.000000, 0.852436,0.147564, maf-5-some-pop,maf-5-all-pops 615 chr1 4004262 4004263 rs7518198 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1103.000000,3905.000000, 0.220248,0.779752, maf-5-some-pop 615 chr1 4004398 4004399 rs55651676 0 + C C C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 2710.000000,2298.000000, 0.541134,0.458866, maf-5-some-pop,maf-5-all-pops 615 chr1 4004427 4004428 rs77820424 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 1218.000000,3790.000000, 0.243211,0.756789, maf-5-some-pop,maf-5-all-pops 615 chr1 4004470 4004471 rs58741245 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 615 chr1 4004488 4004489 rs74050425 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop,maf-5-all-pops 615 chr1 4004575 4004576 rs72849394 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 340.000000,4668.000000, 0.067891,0.932109, maf-5-some-pop,maf-5-all-pops 615 chr1 4004732 4004733 rs111696901 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 177.000000,4831.000000, 0.035344,0.964656, 615 chr1 4004760 4004761 rs72849395 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3466.000000,1542.000000, 0.692093,0.307907, maf-5-some-pop,maf-5-all-pops 615 chr1 4004812 4004813 rs56300127 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2295.000000,2713.000000, 0.458267,0.541733, maf-5-some-pop,maf-5-all-pops 615 chr1 4005044 4005045 rs11585024 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 G,T, 3982.000000,1026.000000, 0.795128,0.204872, maf-5-some-pop,maf-5-all-pops 615 chr1 4005160 4005161 rs10915614 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4442.000000,566.000000, 0.886981,0.113019, maf-5-some-pop,maf-5-all-pops 615 chr1 4005177 4005178 rs72641002 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 574.000000,4434.000000, 0.114617,0.885383, maf-5-some-pop,maf-5-all-pops 615 chr1 4005222 4005223 rs11585050 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1028.000000,3980.000000, 0.205272,0.794728, 615 chr1 4005227 4005229 rs146723137 0 + AC AC -/AC genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,AC, 243.000000,4765.000000, 0.048522,0.951478, 615 chr1 4005255 4005256 rs116446811 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 615 chr1 4005385 4005386 rs72642205 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4459.000000,549.000000, 0.890375,0.109625, maf-5-some-pop,maf-5-all-pops 615 chr1 4005411 4005412 rs11583584 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3459.000000,1549.000000, 0.690695,0.309305, maf-5-some-pop,maf-5-all-pops 615 chr1 4005507 4005508 rs11583599 0 + A A A/C genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 3460.000000,1548.000000, 0.690895,0.309105, maf-5-some-pop,maf-5-all-pops 615 chr1 4005539 4005540 rs57415555 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 3462.000000,1546.000000, 0.691294,0.308706, maf-5-some-pop,maf-5-all-pops 615 chr1 4005547 4005548 rs57255582 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 3430.000000,1578.000000, 0.684904,0.315096, maf-5-some-pop,maf-5-all-pops 615 chr1 4005692 4005693 rs7524279 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1517.000000,3491.000000, 0.302915,0.697085, maf-5-some-pop,maf-5-all-pops 615 chr1 4005717 4005718 rs7513058 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3465.000000,1543.000000, 0.691893,0.308107, maf-5-some-pop,maf-5-all-pops 615 chr1 4005820 4005821 rs60448107 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop,maf-5-all-pops 615 chr1 4005823 4005824 rs74050430 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop,maf-5-all-pops 615 chr1 4005928 4005929 rs7513254 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,G, 3461.000000,1547.000000, 0.691094,0.308906, maf-5-some-pop,maf-5-all-pops 615 chr1 4005992 4005993 rs77339597 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 615 chr1 4006183 4006184 rs74050432 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop,maf-5-all-pops 615 chr1 4006291 4006292 rs56393758 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1546.000000,3462.000000, 0.308706,0.691294, maf-5-some-pop,maf-5-all-pops 615 chr1 4006305 4006306 rs9794011 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,G, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop,maf-5-all-pops 615 chr1 4006366 4006367 rs9793287 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2094.000000,2914.000000, 0.418131,0.581869, maf-5-some-pop,maf-5-all-pops 615 chr1 4006431 4006432 rs72642208 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 175.000000,4833.000000, 0.034944,0.965056, 615 chr1 4006670 4006671 rs7526903 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2268.000000,2740.000000, 0.452875,0.547125, maf-5-some-pop,maf-5-all-pops 615 chr1 4006787 4006788 rs7551771 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2897.000000,2111.000000, 0.578474,0.421526, maf-5-some-pop,maf-5-all-pops 615 chr1 4006846 4006847 rs147298525 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,G, 478.000000,4530.000000, 0.095447,0.904553, 615 chr1 4007109 4007110 rs7519458 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2605.000000,2403.000000, 0.520168,0.479832, maf-5-some-pop,maf-5-all-pops 615 chr1 4007557 4007558 rs10737395 0 + C C A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, 2 A,C, 475.000000,4533.000000, 0.094848,0.905152, maf-5-some-pop 615 chr1 4007687 4007688 rs12090228 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4183.000000,825.000000, 0.835264,0.164736, maf-5-some-pop,maf-5-all-pops 615 chr1 4007705 4007706 rs34088401 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,C, 2226.000000,2782.000000, 0.444489,0.555511, 615 chr1 4007776 4007777 rs79360330 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 615 chr1 4007783 4007783 rs567442533 0 + - - -/C genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,C, 4784.000000,224.000000, 0.955272,0.044728, 615 chr1 4008028 4008029 rs10799163 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,PJP,SC_SNP,SSMP, 2 G,T, 3369.000000,1639.000000, 0.672724,0.327276, maf-5-some-pop,maf-5-all-pops 615 chr1 4008051 4008052 rs10915345 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3063.000000,1945.000000, 0.611621,0.388379, maf-5-some-pop,maf-5-all-pops 615 chr1 4008173 4008174 rs34175943 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 661.000000,4347.000000, 0.131989,0.868011, 615 chr1 4008184 4008185 rs112623807 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 615 chr1 4008483 4008484 rs12095155 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 931.000000,4077.000000, 0.185903,0.814097, maf-5-some-pop,maf-5-all-pops 615 chr1 4008568 4008569 rs79279812 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4614.000000,394.000000, 0.921326,0.078674, maf-5-some-pop,maf-5-all-pops 615 chr1 4008668 4008669 rs72850803 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4616.000000,392.000000, 0.921725,0.078275, maf-5-some-pop 615 chr1 4008700 4008701 rs10915368 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4073.000000,935.000000, 0.813299,0.186701, maf-5-some-pop,maf-5-all-pops 615 chr1 4008814 4008815 rs72850805 0 + A A A/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4618.000000,390.000000, 0.922125,0.077875, maf-5-some-pop 615 chr1 4008947 4008948 rs114390224 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, 615 chr1 4009109 4009110 rs76841129 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop,maf-5-all-pops 615 chr1 4009393 4009393 rs146737652 0 + - - -/C genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,C, 4070.000000,938.000000, 0.812700,0.187300, 615 chr1 4009483 4009484 rs6668397 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 955.000000,4053.000000, 0.190695,0.809305, maf-5-some-pop,maf-5-all-pops 615 chr1 4009749 4009750 rs6682838 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM_SSAHASNP,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 271.000000,4737.000000, 0.054113,0.945887, maf-5-some-pop 615 chr1 4009792 4009793 rs4654480 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4046.000000,962.000000, 0.807907,0.192093, maf-5-some-pop,maf-5-all-pops 615 chr1 4009854 4009855 rs4654481 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3380.000000,1628.000000, 0.674920,0.325080, maf-5-some-pop,maf-5-all-pops 615 chr1 4009955 4009956 rs6661168 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4373.000000,635.000000, 0.873203,0.126797, maf-5-some-pop 615 chr1 4009960 4009961 rs59190284 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1627.000000,3381.000000, 0.324880,0.675120, maf-5-some-pop,maf-5-all-pops 615 chr1 4009992 4009993 rs74050435 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4637.000000,371.000000, 0.925919,0.074082, maf-5-some-pop,maf-5-all-pops 615 chr1 4010035 4010036 rs6683165 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2483.000000,2525.000000, 0.495807,0.504193, maf-5-some-pop,maf-5-all-pops 615 chr1 4010057 4010058 rs35302885 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,BILGI_BIOE,BL,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 3989.000000,1019.000000, 0.796526,0.203474, 615 chr1 4010243 4010244 rs10799194 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3494.000000,1514.000000, 0.697684,0.302316, maf-5-some-pop,maf-5-all-pops 615 chr1 4010277 4010277 rs549229988 0 + - - -/G genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,G, 4917.000000,91.000000, 0.981829,0.018171, 615 chr1 4010308 4010309 rs12067409 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4291.000000,717.000000, 0.856829,0.143171, maf-5-some-pop 615 chr1 4010311 4010312 rs115882873 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 217.000000,4791.000000, 0.043331,0.956669, 615 chr1 4010341 4010342 rs12046333 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4336.000000,672.000000, 0.865815,0.134185, maf-5-some-pop 615 chr1 4010413 4010414 rs115414387 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop,maf-5-all-pops 615 chr1 4010668 4010669 rs72850807 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4742.000000,266.000000, 0.946885,0.053115, maf-5-some-pop,maf-5-all-pops 615 chr1 4010682 4010683 rs72850808 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4132.000000,876.000000, 0.825080,0.174920, maf-5-some-pop,maf-5-all-pops 615 chr1 4010742 4010743 rs4654482 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2861.000000,2147.000000, 0.571286,0.428714, maf-5-some-pop,maf-5-all-pops 615 chr1 4010745 4010746 rs74050438 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop,maf-5-all-pops 615 chr1 4010759 4010760 rs10915419 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4851.000000,157.000000, 0.968650,0.031350, maf-5-some-pop 615 chr1 4010799 4010800 rs112509360 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 615 chr1 4010888 4010889 rs6426385 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,T, 897.000000,4111.000000, 0.179113,0.820887, maf-5-some-pop,maf-5-all-pops 615 chr1 4010985 4010986 rs139046102 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4918.000000,90.000000, 0.982029,0.017971, 615 chr1 4011084 4011085 rs12726656 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 659.000000,4349.000000, 0.131589,0.868411, 615 chr1 4011296 4011297 rs146633888 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4582.000000,426.000000, 0.914936,0.085064, 615 chr1 4011304 4011305 rs141368950 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4800.000000,208.000000, 0.958466,0.041533, 615 chr1 4011321 4011322 rs143331422 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 615 chr1 4011389 4011390 rs11576512 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 529.000000,4479.000000, 0.105631,0.894369, 615 chr1 4011440 4011441 rs140505433 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 253.000000,4755.000000, 0.050519,0.949481, 615 chr1 4011638 4011639 rs10753364 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 669.000000,4339.000000, 0.133586,0.866414, maf-5-some-pop 615 chr1 4011666 4011667 rs10915426 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop,maf-5-all-pops 615 chr1 4011744 4011745 rs76919143 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 615 chr1 4012009 4012010 rs74050439 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop 615 chr1 4012232 4012233 rs10915427 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop 615 chr1 4012348 4012349 rs12058774 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 13 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop 615 chr1 4012471 4012472 rs11590912 0 + A A A/C genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP, 2 A,C, 4193.000000,815.000000, 0.837260,0.162740, maf-5-some-pop,maf-5-all-pops 615 chr1 4012646 4012647 rs114359120 0 + A A A/T genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4956.000000,52.000000, 0.989617,0.010383, 615 chr1 4012706 4012707 rs74417278 0 + T T C/T genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 615 chr1 4012708 4012709 rs12411104 0 + A A A/T genomic single unknown 0 0 near-gene-3 exact 1 12 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,T, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop,maf-5-all-pops 615 chr1 4012823 4012824 rs141205519 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 615 chr1 4012861 4012862 rs77548256 0 + C C A/C genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 615 chr1 4012945 4012946 rs77713227 0 + A A A/G genomic single unknown 0 0 near-gene-3 exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 615 chr1 4012990 4012991 rs12404745 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SI_EXO,SSMP, 2 C,T, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop 615 chr1 4013036 4013037 rs12401979 0 + G G A/G genomic single unknown 0 0 near-gene-3 exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 287.000000,4721.000000, 0.057308,0.942692, maf-5-some-pop 615 chr1 4013187 4013188 rs113280925 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 G,T, 4950.000000,58.000000, 0.988419,0.011582, 615 chr1 4013534 4013535 rs12061407 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop,maf-5-all-pops 615 chr1 4013564 4013565 rs75687659 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 615 chr1 4013601 4013602 rs10753366 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 791.000000,4217.000000, 0.157947,0.842053, maf-5-some-pop 615 chr1 4013617 4013618 rs10799202 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 792.000000,4216.000000, 0.158147,0.841853, maf-5-some-pop 615 chr1 4013631 4013632 rs12061446 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP, 2 A,G, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop,maf-5-all-pops 615 chr1 4013748 4013749 rs12096512 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP, 2 C,T, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop 615 chr1 4013986 4013987 rs115150666 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, 615 chr1 4013996 4013997 rs10915431 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP, 2 C,T, 4714.000000,294.000000, 0.941294,0.058706, maf-5-some-pop 615 chr1 4014058 4014059 rs10915432 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 348.000000,4660.000000, 0.069489,0.930511, maf-5-some-pop,maf-5-all-pops 615 chr1 4014090 4014091 rs10915433 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 389.000000,4619.000000, 0.077676,0.922324, maf-5-some-pop 615 chr1 4014245 4014246 rs12405124 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop 615 chr1 4014275 4014276 rs79701314 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, 615 chr1 4014327 4014328 rs9659781 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 813.000000,4195.000000, 0.162340,0.837660, maf-5-some-pop 615 chr1 4014339 4014340 rs9662760 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop 615 chr1 4014410 4014411 rs113193376 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 615 chr1 4014491 4014492 rs12759473 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 351.000000,4657.000000, 0.070088,0.929912, maf-5-some-pop 615 chr1 4014533 4014534 rs12747375 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,GMI,ILLUMINA,SSAHASNP, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, maf-5-some-pop,maf-5-all-pops 615 chr1 4014561 4014562 rs56122622 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HUMANGENOME_JCVI,ILLUMINA,SI_EXO,SSMP, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 615 chr1 4014563 4014563 rs565052973 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,G, 4942.000000,66.000000, 0.986821,0.013179, 615 chr1 4014569 4014572 rs532453700 0 + TTT TTT -/TTT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TTT, 64.000000,4944.000000, 0.012780,0.987220, 615 chr1 4014574 4014575 rs547672325 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 64.000000,4944.000000, 0.012780,0.987220, 615 chr1 4014577 4014577 rs541052892 0 + - - -/AC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AC, 4942.000000,66.000000, 0.986821,0.013179, 615 chr1 4014702 4014703 rs41266221 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF, 2 C,T, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop 615 chr1 4014742 4014743 rs12074335 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 615 chr1 4014964 4014965 rs115966115 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4924.000000,84.000000, 0.983227,0.016773, 615 chr1 4015039 4015040 rs12730895 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop,maf-5-all-pops 615 chr1 4015045 4015046 rs12098029 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 351.000000,4657.000000, 0.070088,0.929912, maf-5-some-pop,maf-5-all-pops 615 chr1 4015080 4015081 rs116207291 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 615 chr1 4015109 4015110 rs114628480 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 615 chr1 4015350 4015350 rs201782433 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,C, 4940.000000,68.000000, 0.986422,0.013578, 615 chr1 4015381 4015382 rs6681347 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1329.000000,3679.000000, 0.265375,0.734625, maf-5-some-pop,maf-5-all-pops 615 chr1 4015512 4015513 rs10799204 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop,maf-5-all-pops 615 chr1 4015517 4015518 rs10799205 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4746.000000,262.000000, 0.947684,0.052316, maf-5-some-pop,maf-5-all-pops 615 chr1 4015542 4015543 rs79929730 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 55.000000,4953.000000, 0.010982,0.989018, 615 chr1 4015667 4015668 rs12401537 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,GMI,SSMP,TISHKOFF, 2 G,T, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop 615 chr1 4015895 4015896 rs10915439 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop,maf-5-all-pops 615 chr1 4015960 4015961 rs10915440 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop,maf-5-all-pops 615 chr1 4016177 4016178 rs117109237 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 615 chr1 4016263 4016269 rs113582912 0 + CTTTCT CTTTCT -/CTTTCT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,CTTTCT, 312.000000,4696.000000, 0.062300,0.937700, 615 chr1 4016266 4016270 rs140641600 0 + TCTC TCTC -/TCTC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,TCTC, 137.000000,4871.000000, 0.027356,0.972644, 615 chr1 4016421 4016422 rs28689971 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSAHASNP,TISHKOFF, 2 A,C, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 615 chr1 4016641 4016641 rs55698528 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,BGI,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 1276.000000,3732.000000, 0.254792,0.745208, 615 chr1 4016865 4016866 rs117692073 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 G,T, 138.000000,4870.000000, 0.027556,0.972444, maf-5-some-pop,maf-5-all-pops 615 chr1 4016933 4016934 rs4654493 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1539.000000,3469.000000, 0.307308,0.692692, maf-5-some-pop,maf-5-all-pops 615 chr1 4017034 4017035 rs79967430 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 138.000000,4870.000000, 0.027556,0.972444, maf-5-some-pop,maf-5-all-pops 615 chr1 4017136 4017137 rs7522140 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1727.000000,3281.000000, 0.344848,0.655152, maf-5-some-pop 615 chr1 4017195 4017196 rs79163690 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,JMKIDD_LAB, 2 A,G, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 615 chr1 4017196 4017197 rs80088720 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 G,T, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop,maf-5-all-pops 615 chr1 4017361 4017362 rs80116688 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop,maf-5-all-pops 615 chr1 4017541 4017542 rs60753427 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 615 chr1 4017549 4017550 rs56756652 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 615 chr1 4018037 4018038 rs115402422 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop 615 chr1 4018778 4018779 rs74591403 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 266.000000,4742.000000, 0.053115,0.946885, maf-5-some-pop,maf-5-all-pops 615 chr1 4018994 4018995 rs77103526 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop,maf-5-all-pops 615 chr1 4019174 4019175 rs12072706 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 615 chr1 4019236 4019237 rs6426393 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2157.000000,2851.000000, 0.430711,0.569289, maf-5-some-pop,maf-5-all-pops 615 chr1 4019261 4019262 rs114059471 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 615 chr1 4019306 4019306 rs149638328 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF,WARNICH_LAB, 2 -,C, 4735.000000,273.000000, 0.945487,0.054513, 615 chr1 4019337 4019339 rs538717453 0 + TT TT -/TT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TT, 99.000000,4909.000000, 0.019768,0.980232, 615 chr1 4019379 4019380 rs6426394 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4138.000000,870.000000, 0.826278,0.173722, 615 chr1 4019398 4019399 rs6426395 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1121.000000,3887.000000, 0.223842,0.776158, 615 chr1 4019455 4019456 rs77805542 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4204.000000,804.000000, 0.839457,0.160543, maf-5-some-pop,maf-5-all-pops 615 chr1 4019509 4019510 rs76284010 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4186.000000,822.000000, 0.835863,0.164137, 615 chr1 4019520 4019521 rs149295368 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4751.000000,257.000000, 0.948682,0.051318, 615 chr1 4019549 4019550 rs113679638 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 810.000000,4198.000000, 0.161741,0.838259, 615 chr1 4019696 4019697 rs9426474 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,G, 1835.000000,3173.000000, 0.366414,0.633586, maf-5-some-pop,maf-5-all-pops 615 chr1 4020135 4020136 rs112087829 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 615 chr1 4020444 4020445 rs66490264 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 447.000000,4561.000000, 0.089257,0.910743, maf-5-some-pop 615 chr1 4020624 4020625 rs75193541 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 644.000000,4364.000000, 0.128594,0.871406, 615 chr1 4020766 4020776 rs146158902 0 + ATAAATAAAT ATAAATAAAT -/ATAAATAAAT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,ATAAATAAAT, 880.000000,4128.000000, 0.175719,0.824281, 615 chr1 4020869 4020870 rs74604038 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, 615 chr1 4020978 4020979 rs77290862 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 706.000000,4302.000000, 0.140974,0.859026, maf-5-some-pop 615 chr1 4021401 4021402 rs72850835 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 356.000000,4652.000000, 0.071086,0.928914, maf-5-some-pop,maf-5-all-pops 615 chr1 4021518 4021519 rs79416905 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 615 chr1 4021548 4021549 rs72850836 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 603.000000,4405.000000, 0.120407,0.879593, maf-5-some-pop,maf-5-all-pops 615 chr1 4021584 4021585 rs57524465 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,TISHKOFF, 2 G,T, 4892.000000,116.000000, 0.976837,0.023163, maf-5-some-pop,maf-5-all-pops 615 chr1 4021618 4021619 rs77325902 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, 615 chr1 4021897 4021897 rs543642158 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 2977.000000,2031.000000, 0.594449,0.405551, 615 chr1 4021979 4021980 rs114924780 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4668.000000,340.000000, 0.932109,0.067891, maf-5-some-pop,maf-5-all-pops 615 chr1 4022122 4022123 rs113489719 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 615 chr1 4022374 4022375 rs57341805 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 A,T, 871.000000,4137.000000, 0.173922,0.826078, maf-5-some-pop 615 chr1 4022464 4022465 rs10915469 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2752.000000,2256.000000, 0.549521,0.450479, maf-5-some-pop,maf-5-all-pops 615 chr1 4022711 4022712 rs7540846 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2262.000000,2746.000000, 0.451677,0.548323, maf-5-some-pop,maf-5-all-pops 615 chr1 4022722 4022722 rs377446504 0 + - - -/TGGTAGGC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,TGGTAGGC, 4892.000000,116.000000, 0.976837,0.023163, 615 chr1 4022978 4022979 rs7516192 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2749.000000,2259.000000, 0.548922,0.451078, maf-5-some-pop 615 chr1 4022994 4022995 rs9426476 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4086.000000,922.000000, 0.815895,0.184105, maf-5-some-pop,maf-5-all-pops 615 chr1 4023034 4023037 rs61596013 0 + TTT TTT -/TTT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,GMI,HGSV,PJP, 2 -,TTT, 2769.000000,2239.000000, 0.552915,0.447085, 615 chr1 4023049 4023050 rs7548134 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,WI_SSAHASNP, 2 G,T, 875.000000,4133.000000, 0.174720,0.825280, 615 chr1 4023113 4023114 rs7541241 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2749.000000,2259.000000, 0.548922,0.451078, 615 chr1 4023209 4023210 rs113121441 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,C, 930.000000,4078.000000, 0.185703,0.814297, 615 chr1 4023385 4023386 rs9426498 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2747.000000,2261.000000, 0.548522,0.451478, maf-5-some-pop,maf-5-all-pops 615 chr1 4023532 4023533 rs72850839 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 924.000000,4084.000000, 0.184505,0.815495, maf-5-some-pop,maf-5-all-pops 615 chr1 4023597 4023598 rs9426499 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2261.000000,2747.000000, 0.451478,0.548522, maf-5-some-pop,maf-5-all-pops 615 chr1 4023735 4023736 rs9426477 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 2263.000000,2745.000000, 0.451877,0.548123, maf-5-some-pop,maf-5-all-pops 615 chr1 4023859 4023860 rs72850845 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 903.000000,4105.000000, 0.180312,0.819688, maf-5-some-pop 615 chr1 4023993 4023994 rs75981201 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 615 chr1 4024080 4024081 rs6698811 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2743.000000,2265.000000, 0.547724,0.452276, maf-5-some-pop,maf-5-all-pops 615 chr1 4024255 4024256 rs11578019 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2268.000000,2740.000000, 0.452875,0.547125, maf-5-some-pop,maf-5-all-pops 615 chr1 4024325 4024326 rs11584552 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2748.000000,2260.000000, 0.548722,0.451278, maf-5-some-pop,maf-5-all-pops 615 chr1 4024418 4024419 rs11578438 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2265.000000,2743.000000, 0.452276,0.547724, maf-5-some-pop,maf-5-all-pops 615 chr1 4024528 4024529 rs72850848 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 615 chr1 4024554 4024555 rs11803204 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 474.000000,4534.000000, 0.094649,0.905351, maf-5-some-pop,maf-5-all-pops 615 chr1 4024613 4024614 rs10799215 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2743.000000,2265.000000, 0.547724,0.452276, maf-5-some-pop,maf-5-all-pops 615 chr1 4024753 4024754 rs80036173 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 635.000000,4373.000000, 0.126797,0.873203, maf-5-some-pop,maf-5-all-pops 615 chr1 4024755 4024756 rs79670266 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 615 chr1 4024758 4024759 rs77208442 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop 615 chr1 4024926 4024927 rs10753373 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 925.000000,4083.000000, 0.184704,0.815296, maf-5-some-pop 615 chr1 4024956 4024957 rs115666300 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 615 chr1 4025088 4025089 rs114160626 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 615 chr1 4025235 4025236 rs147900888 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 615 chr1 4025358 4025359 rs34322311 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,PJP,SSMP, 2 -,A, 3263.000000,1745.000000, 0.651558,0.348442, 615 chr1 4025571 4025572 rs34400281 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 2265.000000,2743.000000, 0.452276,0.547724, 615 chr1 4025740 4025741 rs10915481 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1640.000000,3368.000000, 0.327476,0.672524, maf-5-some-pop,maf-5-all-pops 615 chr1 4025941 4025942 rs7550426 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1696.000000,3312.000000, 0.338658,0.661342, maf-5-some-pop,maf-5-all-pops 615 chr1 4025992 4025993 rs145169855 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 52.000000,4956.000000, 0.010383,0.989617, 615 chr1 4026097 4026098 rs7550609 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4098.000000,910.000000, 0.818291,0.181709, maf-5-some-pop 615 chr1 4026320 4026321 rs10915483 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2696.000000,2312.000000, 0.538339,0.461661, maf-5-some-pop,maf-5-all-pops 615 chr1 4026360 4026361 rs10915484 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2265.000000,2743.000000, 0.452276,0.547724, maf-5-some-pop,maf-5-all-pops 615 chr1 4026727 4026728 rs7410846 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 879.000000,4129.000000, 0.175519,0.824481, maf-5-some-pop 615 chr1 4026837 4026838 rs7417834 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 925.000000,4083.000000, 0.184704,0.815296, maf-5-some-pop 615 chr1 4026967 4026968 rs78312602 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 615 chr1 4027110 4027111 rs72850857 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4096.000000,912.000000, 0.817891,0.182109, maf-5-some-pop 615 chr1 4027159 4027160 rs79332590 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 615 chr1 4027180 4027181 rs58378666 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4239.000000,769.000000, 0.846446,0.153554, maf-5-some-pop,maf-5-all-pops 615 chr1 4027242 4027243 rs11576802 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3314.000000,1694.000000, 0.661741,0.338259, maf-5-some-pop,maf-5-all-pops 615 chr1 4027322 4027323 rs116631582 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 615 chr1 4027454 4027455 rs12756428 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 615 chr1 4027589 4027590 rs6693909 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2244.000000,2764.000000, 0.448083,0.551917, maf-5-some-pop,maf-5-all-pops 615 chr1 4027964 4027965 rs4654520 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4082.000000,926.000000, 0.815096,0.184904, maf-5-some-pop 615 chr1 4027988 4027989 rs57197012 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4662.000000,346.000000, 0.930911,0.069090, maf-5-some-pop,maf-5-all-pops 615 chr1 4028549 4028550 rs76979594 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 615 chr1 4028684 4028685 rs11584297 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2266.000000,2742.000000, 0.452476,0.547524, maf-5-some-pop,maf-5-all-pops 615 chr1 4028853 4028854 rs72850858 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop,maf-5-all-pops 615 chr1 4028923 4028924 rs10915490 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 960.000000,4048.000000, 0.191693,0.808307, maf-5-some-pop 615 chr1 4028936 4028937 rs10915491 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1049.000000,3959.000000, 0.209465,0.790535, maf-5-some-pop,maf-5-all-pops 615 chr1 4029015 4029016 rs78371992 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 615 chr1 4029088 4029089 rs60369876 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4324.000000,684.000000, 0.863419,0.136581, maf-5-some-pop 615 chr1 4029153 4029154 rs116621184 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 615 chr1 4029183 4029184 rs79567277 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4323.000000,685.000000, 0.863219,0.136781, maf-5-some-pop 615 chr1 4029256 4029257 rs76856914 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 615 chr1 4029732 4029733 rs10915495 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1051.000000,3957.000000, 0.209864,0.790136, maf-5-some-pop 615 chr1 4029765 4029766 rs78497699 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 627.000000,4381.000000, 0.125200,0.874800, maf-5-some-pop 615 chr1 4030054 4030055 rs74385856 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, 615 chr1 4030085 4030086 rs74757235 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 615 chr1 4030199 4030200 rs7417339 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3959.000000,1049.000000, 0.790535,0.209465, maf-5-some-pop 615 chr1 4030261 4030262 rs7417345 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4049.000000,959.000000, 0.808506,0.191494, maf-5-some-pop,maf-5-all-pops 615 chr1 4030263 4030264 rs10915496 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2329.000000,2679.000000, 0.465056,0.534944, maf-5-some-pop,maf-5-all-pops 615 chr1 4030455 4030456 rs74050448 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 A,C, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop,maf-5-all-pops 615 chr1 4030602 4030603 rs115822211 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 615 chr1 4030749 4030750 rs77933698 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 615 chr1 4030809 4030810 rs56073688 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 615 chr1 4031025 4031026 rs10915497 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 615 chr1 4031078 4031079 rs10915498 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop 615 chr1 4031093 4031094 rs4654427 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2698.000000,2310.000000, 0.538738,0.461262, maf-5-some-pop,maf-5-all-pops 615 chr1 4031196 4031196 rs145014763 0 + - - -/AC genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,AC, 4919.000000,89.000000, 0.982228,0.017772, 615 chr1 4031643 4031644 rs58856511 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4045.000000,963.000000, 0.807708,0.192292, maf-5-some-pop 615 chr1 4031685 4031686 rs139326853 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 615 chr1 4031813 4031814 rs10915504 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3963.000000,1045.000000, 0.791334,0.208666, maf-5-some-pop 615 chr1 4032083 4032084 rs77075952 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 615 chr1 4032111 4032112 rs77640783 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,maf-5-all-pops 615 chr1 4032151 4032152 rs74363376 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop 615 chr1 4032182 4032183 rs74707015 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,maf-5-all-pops 615 chr1 4032372 4032373 rs6426410 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4192.000000,816.000000, 0.837061,0.162939, maf-5-some-pop 615 chr1 4032761 4032762 rs57147548 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4039.000000,969.000000, 0.806510,0.193490, maf-5-some-pop,maf-5-all-pops 615 chr1 4033251 4033252 rs60584658 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop,maf-5-all-pops 615 chr1 4033386 4033387 rs7533940 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2193.000000,2815.000000, 0.437899,0.562101, maf-5-some-pop,maf-5-all-pops 615 chr1 4033650 4033651 rs80250234 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 A,C, 21.000000,99.000000, 0.175000,0.825000, maf-5-some-pop,maf-5-all-pops 615 chr1 4033692 4033693 rs111448074 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,SSMP, 2 C,T, 1046.000000,3962.000000, 0.208866,0.791134, 615 chr1 4033698 4033699 rs112979055 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 1138.000000,3870.000000, 0.227236,0.772764, 615 chr1 4033702 4033703 rs113733434 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 3870.000000,1138.000000, 0.772764,0.227236, 615 chr1 4033790 4033791 rs115910829 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 615 chr1 4034058 4034059 rs12029788 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 950.000000,4058.000000, 0.189696,0.810304, maf-5-some-pop 615 chr1 4034096 4034097 rs12031557 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop 615 chr1 4034199 4034200 rs60072498 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,SSMP,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 615 chr1 4034245 4034246 rs11581573 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 819.000000,4189.000000, 0.163538,0.836462, maf-5-some-pop 615 chr1 4034564 4034564 rs532285797 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 3430.000000,1578.000000, 0.684904,0.315096, 615 chr1 4034938 4034939 rs11803504 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,HGSV,JMKIDD_LAB,PJP,TISHKOFF, 2 G,T, 98.000000,4910.000000, 0.019569,0.980431, 615 chr1 4034949 4034951 rs60863111 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,HGSV,PJP,TISHKOFF, 2 -,AT, 96.000000,4912.000000, 0.019169,0.980831, 615 chr1 4034950 4034951 rs10915513 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2246.000000,2762.000000, 0.448482,0.551518, 615 chr1 4035002 4035004 rs140978034 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 8 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,CA, 2194.000000,2814.000000, 0.438099,0.561901, 615 chr1 4035048 4035049 rs12073280 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4038.000000,970.000000, 0.806310,0.193690, maf-5-some-pop 615 chr1 4035104 4035105 rs117329980 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, 615 chr1 4035116 4035117 rs143794538 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 615 chr1 4035128 4035129 rs10799224 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4197.000000,811.000000, 0.838059,0.161941, maf-5-some-pop 615 chr1 4035160 4035161 rs10799225 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4189.000000,819.000000, 0.836462,0.163538, maf-5-some-pop 615 chr1 4035171 4035172 rs116088910 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, 615 chr1 4035184 4035186 rs140513451 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,CA, 852.000000,4156.000000, 0.170128,0.829872, 615 chr1 4035254 4035255 rs10799226 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2813.000000,2195.000000, 0.561701,0.438299, maf-5-some-pop,maf-5-all-pops 615 chr1 4035266 4035267 rs10915514 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2194.000000,2814.000000, 0.438099,0.561901, maf-5-some-pop,maf-5-all-pops 615 chr1 4035276 4035277 rs12076881 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 970.000000,4038.000000, 0.193690,0.806310, maf-5-some-pop,maf-5-all-pops 615 chr1 4035291 4035292 rs12073419 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3940.000000,1068.000000, 0.786741,0.213259, maf-5-some-pop,maf-5-all-pops 615 chr1 4035306 4035307 rs12073422 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4039.000000,969.000000, 0.806510,0.193490, maf-5-some-pop,maf-5-all-pops 615 chr1 4035672 4035673 rs10799227 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 818.000000,4190.000000, 0.163339,0.836661, maf-5-some-pop 615 chr1 4035969 4035970 rs116645965 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, maf-5-some-pop,maf-5-all-pops 615 chr1 4036079 4036080 rs116429408 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 615 chr1 4036194 4036195 rs10753378 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4279.000000,729.000000, 0.854433,0.145567, maf-5-some-pop 615 chr1 4036265 4036266 rs10915516 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4320.000000,688.000000, 0.862620,0.137380, 615 chr1 4036412 4036413 rs7526523 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2211.000000,2797.000000, 0.441494,0.558506, maf-5-some-pop 615 chr1 4036423 4036424 rs7551254 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2738.000000,2270.000000, 0.546725,0.453275, maf-5-some-pop,maf-5-all-pops 615 chr1 4036822 4036823 rs7526924 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2299.000000,2709.000000, 0.459065,0.540935, maf-5-some-pop,maf-5-all-pops 615 chr1 4036952 4036953 rs78333027 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop,maf-5-all-pops 615 chr1 4037314 4037315 rs75916826 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop,maf-5-all-pops 615 chr1 4037664 4037665 rs12028397 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2419.000000,2589.000000, 0.483027,0.516973, maf-5-some-pop,maf-5-all-pops 615 chr1 4037708 4037709 rs12747955 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,TISHKOFF, 2 A,C, 2225.000000,2783.000000, 0.444289,0.555711, maf-5-some-pop 615 chr1 4037718 4037718 rs56700097 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,SSIP,TISHKOFF, 2 -,A, 2626.000000,2382.000000, 0.524361,0.475639, 615 chr1 4038043 4038044 rs116831197 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 615 chr1 4038064 4038065 rs78738452 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 288.000000,4720.000000, 0.057508,0.942492, maf-5-some-pop,maf-5-all-pops 615 chr1 4038358 4038359 rs72644269 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop,maf-5-all-pops 615 chr1 4038767 4038771 rs75263835 0 + TAGA TAGA -/TAGA genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,LUNTER,SSMP, 2 -,TAGA, 1697.000000,3311.000000, 0.338858,0.661142, 615 chr1 4038771 4038772 rs10799229 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 2305.000000,2703.000000, 0.460264,0.539736, maf-5-some-pop,maf-5-all-pops 615 chr1 4038848 4038849 rs141124131 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 110.000000,4898.000000, 0.021965,0.978035, 615 chr1 4038876 4038877 rs4654524 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2304.000000,2704.000000, 0.460064,0.539936, maf-5-some-pop,maf-5-all-pops 615 chr1 4038904 4038905 rs115965977 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 615 chr1 4039144 4039145 rs4654428 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1902.000000,3106.000000, 0.379792,0.620208, maf-5-some-pop,maf-5-all-pops 615 chr1 4039248 4039249 rs72644271 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4210.000000,798.000000, 0.840655,0.159345, maf-5-some-pop,maf-5-all-pops 615 chr1 4039439 4039440 rs12758410 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2695.000000,2313.000000, 0.538139,0.461861, maf-5-some-pop,maf-5-all-pops 615 chr1 4039840 4039841 rs74778903 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 615 chr1 4039895 4039896 rs11587331 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2788.000000,2220.000000, 0.556709,0.443291, maf-5-some-pop,maf-5-all-pops 615 chr1 4039987 4039988 rs72644272 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 676.000000,4332.000000, 0.134984,0.865016, maf-5-some-pop 615 chr1 4040088 4040089 rs56884685 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,JMKIDD_LAB, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 615 chr1 4040154 4040155 rs4654525 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 735.000000,4273.000000, 0.146765,0.853235, maf-5-some-pop 615 chr1 4040365 4040366 rs141832632 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 615 chr1 4040795 4040796 rs79355023 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 615 chr1 4041180 4041181 rs72644273 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 798.000000,4210.000000, 0.159345,0.840655, maf-5-some-pop 615 chr1 4041477 4041478 rs10753379 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1936.000000,3072.000000, 0.386581,0.613419, maf-5-some-pop,maf-5-all-pops 615 chr1 4041959 4041960 rs142497735 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4845.000000,163.000000, 0.967452,0.032548, 615 chr1 4042975 4042976 rs74050452 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop,maf-5-all-pops 615 chr1 4042978 4042979 rs60972376 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 3231.000000,1777.000000, 0.645168,0.354832, maf-5-some-pop,maf-5-all-pops 615 chr1 4043048 4043049 rs55887893 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4526.000000,482.000000, 0.903754,0.096246, maf-5-some-pop 615 chr1 4043099 4043100 rs77902758 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 615 chr1 4043136 4043137 rs56324870 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop,maf-5-all-pops 615 chr1 4043515 4043516 rs10799231 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2715.000000,2293.000000, 0.542133,0.457867, maf-5-some-pop,maf-5-all-pops 615 chr1 4043677 4043678 rs72850879 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop,maf-5-all-pops 615 chr1 4044790 4044791 rs59118111 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1738.000000,3270.000000, 0.347045,0.652955, maf-5-some-pop,maf-5-all-pops 615 chr1 4044913 4044914 rs74050454 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 615 chr1 4045002 4045003 rs72850882 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop,maf-5-all-pops 615 chr1 4045326 4045327 rs4654538 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop 615 chr1 4045584 4045584 rs34170841 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,ABI,BILGI_BIOE,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 -,A, 2036.000000,2972.000000, 0.406550,0.593450, 615 chr1 4045639 4045640 rs72629504 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 601.000000,4407.000000, 0.120008,0.879992, maf-5-some-pop 615 chr1 4045995 4045996 rs180702037 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, 615 chr1 4046360 4046361 rs74974509 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 615 chr1 4046380 4046381 rs199751607 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 64.000000,4944.000000, 0.012780,0.987220, 615 chr1 4046628 4046629 rs11584108 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB, 2 A,G, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop,maf-5-all-pops 615 chr1 4046778 4046779 rs200747238 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,C, 51.000000,4957.000000, 0.010184,0.989816, 615 chr1 4046785 4046789 rs200118404 0 + GCCT GCCT -/GCCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GCCT, 52.000000,4956.000000, 0.010383,0.989617, 615 chr1 4047035 4047036 rs117910573 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 615 chr1 4047136 4047137 rs61423816 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 615 chr1 4047262 4047263 rs11809590 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 615 chr1 4047276 4047277 rs4654543 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4251.000000,757.000000, 0.848842,0.151158, maf-5-some-pop 615 chr1 4047554 4047555 rs60199044 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop 615 chr1 4047618 4047619 rs10449244 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1512.000000,3496.000000, 0.301917,0.698083, maf-5-some-pop,maf-5-all-pops 615 chr1 4048673 4048674 rs4654544 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 772.000000,4236.000000, 0.154153,0.845847, maf-5-some-pop 615 chr1 4048856 4048857 rs536604850 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 2530.000000,2478.000000, 0.505192,0.494808, 615 chr1 4049020 4049021 rs150535300 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 159.000000,4849.000000, 0.031749,0.968251, 615 chr1 4049069 4049070 rs7413980 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 4757.000000,251.000000, 0.949880,0.050120, 615 chr1 4049109 4049110 rs143141992 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4900.000000,108.000000, 0.978435,0.021566, 615 chr1 4049127 4049128 rs12046032 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4421.000000,587.000000, 0.882788,0.117212, 615 chr1 4049511 4049512 rs74509653 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, maf-5-some-pop,maf-5-all-pops 615 chr1 4049777 4049778 rs145355554 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 615 chr1 4049785 4049786 rs6426416 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4335.000000,673.000000, 0.865615,0.134385, maf-5-some-pop 615 chr1 4049798 4049799 rs12035085 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 814.000000,4194.000000, 0.162540,0.837460, maf-5-some-pop 615 chr1 4049979 4049980 rs4654437 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2793.000000,2215.000000, 0.557708,0.442292, maf-5-some-pop,maf-5-all-pops 615 chr1 4050459 4050460 rs572399514 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4941.000000,67.000000, 0.986621,0.013379, 615 chr1 4050519 4050520 rs66622962 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4295.000000,713.000000, 0.857628,0.142372, 615 chr1 4050952 4050953 rs10737411 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 826.000000,4182.000000, 0.164936,0.835064, maf-5-some-pop 615 chr1 4051248 4051249 rs10915546 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2230.000000,2778.000000, 0.445288,0.554712, maf-5-some-pop,maf-5-all-pops 615 chr1 4051400 4051401 rs12082255 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, 615 chr1 4052054 4052055 rs12145443 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 750.000000,4258.000000, 0.149760,0.850240, maf-5-some-pop 615 chr1 4052216 4052217 rs79434501 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 615 chr1 4052335 4052336 rs143970398 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,WARNICH_LAB, 2 A,G, 4899.000000,109.000000, 0.978235,0.021765, 615 chr1 4052367 4052368 rs148226214 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, 615 chr1 4052428 4052429 rs114606406 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 615 chr1 4052959 4052960 rs56943026 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 615 chr1 4053434 4053435 rs12038964 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 948.000000,4060.000000, 0.189297,0.810703, maf-5-some-pop,maf-5-all-pops 615 chr1 4053509 4053510 rs12040628 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3753.000000,1255.000000, 0.749401,0.250599, maf-5-some-pop,maf-5-all-pops 615 chr1 4053695 4053696 rs77935991 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 615 chr1 4053913 4053914 rs78103353 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, 615 chr1 4054066 4054067 rs6691155 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2461.000000,2547.000000, 0.491414,0.508586, maf-5-some-pop,maf-5-all-pops 615 chr1 4054244 4054245 rs77114824 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop,maf-5-all-pops 615 chr1 4054577 4054578 rs75088874 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 615 chr1 4054971 4054972 rs9426500 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3881.000000,1127.000000, 0.774960,0.225040, maf-5-some-pop,maf-5-all-pops 615 chr1 4054992 4054993 rs79636570 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, maf-5-some-pop,maf-5-all-pops 615 chr1 4055077 4055078 rs140868110 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 615 chr1 4055229 4055230 rs12040165 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop 615 chr1 4055257 4055258 rs76385798 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4955.000000,53.000000, 0.989417,0.010583, 615 chr1 4055279 4055280 rs7413013 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2179.000000,2829.000000, 0.435104,0.564896, maf-5-some-pop,maf-5-all-pops 615 chr1 4055578 4055579 rs10799242 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2380.000000,2628.000000, 0.475240,0.524760, maf-5-some-pop,maf-5-all-pops 615 chr1 4055626 4055627 rs9426501 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4409.000000,599.000000, 0.880391,0.119609, maf-5-some-pop 615 chr1 4055715 4055716 rs4654553 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1997.000000,3011.000000, 0.398762,0.601238, maf-5-some-pop,maf-5-all-pops 615 chr1 4055777 4055778 rs4654554 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,WI_SSAHASNP, 2 C,G, 54.000000,4954.000000, 0.010783,0.989217, 615 chr1 4056111 4056112 rs116469517 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4954.000000,54.000000, 0.989217,0.010783, 615 chr1 4056263 4056264 rs79762816 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, maf-5-some-pop,maf-5-all-pops 615 chr1 4056355 4056356 rs7413578 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3120.000000,1888.000000, 0.623003,0.376997, maf-5-some-pop,maf-5-all-pops 615 chr1 4056463 4056464 rs28609919 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 888.000000,4120.000000, 0.177316,0.822684, maf-5-some-pop 615 chr1 4056595 4056595 rs145915805 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 4915.000000,93.000000, 0.981430,0.018570, 615 chr1 4057347 4057348 rs80285126 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop 615 chr1 4057388 4057389 rs12756251 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4462.000000,546.000000, 0.890974,0.109026, maf-5-some-pop 615 chr1 4057401 4057402 rs12733769 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 1010.000000,3998.000000, 0.201677,0.798323, maf-5-some-pop 615 chr1 4058072 4058073 rs111571530 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 615 chr1 4058098 4058099 rs116559629 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 615 chr1 4058375 4058376 rs115047060 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 615 chr1 4058443 4058444 rs4654557 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2634.000000,2374.000000, 0.525958,0.474042, maf-5-some-pop,maf-5-all-pops 615 chr1 4058452 4058453 rs115702386 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 615 chr1 4059208 4059209 rs78989079 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 182.000000,4826.000000, 0.036342,0.963658, 615 chr1 4059273 4059274 rs115311387 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4639.000000,369.000000, 0.926318,0.073682, maf-5-some-pop,maf-5-all-pops 615 chr1 4059364 4059365 rs140832950 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4351.000000,657.000000, 0.868810,0.131190, 615 chr1 4059699 4059700 rs76511860 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 4414.000000,594.000000, 0.881390,0.118610, 615 chr1 4059749 4059750 rs4654559 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4457.000000,551.000000, 0.889976,0.110024, 615 chr1 4059757 4059758 rs113285680 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 A,C, 1463.000000,3545.000000, 0.292133,0.707867, 615 chr1 4059839 4059840 rs373611949 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,T, 2683.000000,2325.000000, 0.535743,0.464257, 615 chr1 4059846 4059847 rs4654560 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSAHASNP,WI_SSAHASNP, 2 A,G, 2108.000000,2900.000000, 0.420927,0.579073, 615 chr1 4059849 4059850 rs12139977 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,SC_SNP, 2 A,G, 2315.000000,2693.000000, 0.462260,0.537740, 615 chr1 4059853 4059854 rs4654445 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ENSEMBL,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 2315.000000,2693.000000, 0.462260,0.537740, 615 chr1 4059875 4059876 rs534548848 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 987.000000,4021.000000, 0.197085,0.802915, 615 chr1 4059876 4059877 rs79905058 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,GMI,SSMP, 2 A,G, 4066.000000,942.000000, 0.811901,0.188099, 615 chr1 4059906 4059907 rs11808399 0 + A A A/G genomic single by-cluster,by-frequency,by-hapmap 0.48 0.09798 unknown exact 1 4 COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,SSMP, 2 A,G, 4.000000,6.000000, 0.400000,0.600000, 615 chr1 4059926 4059927 rs11807610 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,SSMP, 2 C,T, 4502.000000,506.000000, 0.898962,0.101038, 615 chr1 4059939 4059940 rs11800198 0 + C C A/C genomic single by-cluster,by-frequency,by-hapmap 0.489796 0.070696 unknown exact 1 5 BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL, 2 A,C, 8.000000,6.000000, 0.571429,0.428571, 615 chr1 4059954 4059955 rs10915563 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,SC_SNP, 2 A,G, 1481.000000,3527.000000, 0.295727,0.704273, 615 chr1 4059978 4059979 rs556268362 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4957.000000,51.000000, 0.989816,0.010184, 615 chr1 4059979 4059980 rs576409751 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 615 chr1 4059993 4059994 rs10799245 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,SC_SNP,SSMP, 2 A,C, 3920.000000,1088.000000, 0.782748,0.217252, 615 chr1 4059998 4059999 rs10915564 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2932.000000,2076.000000, 0.585463,0.414537, maf-5-some-pop,maf-5-all-pops 615 chr1 4060150 4060151 rs79414495 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, 615 chr1 4060171 4060172 rs72850900 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 565.000000,4443.000000, 0.112819,0.887181, maf-5-some-pop,maf-5-all-pops 615 chr1 4060193 4060194 rs11809548 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL, 2 C,G, 490.000000,4518.000000, 0.097843,0.902156, 615 chr1 4060194 4060194 rs77287069 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,GMI,LUNTER, 2 -,C, 4790.000000,218.000000, 0.956470,0.043530, 615 chr1 4060214 4060215 rs78220068 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,maf-5-all-pops 615 chr1 4060222 4060223 rs74597891 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4725.000000,283.000000, 0.943490,0.056510, maf-5-some-pop 615 chr1 4060233 4060236 rs141691364 0 + CTT CTT -/CTT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,CTT, 201.000000,4807.000000, 0.040136,0.959864, 615 chr1 4060260 4060261 rs79626672 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop,maf-5-all-pops 615 chr1 4060338 4060339 rs150859299 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4951.000000,57.000000, 0.988618,0.011382, 615 chr1 4060869 4060870 rs59166696 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 615 chr1 4060933 4060934 rs57178507 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 312.000000,4696.000000, 0.062300,0.937700, maf-5-some-pop,maf-5-all-pops 615 chr1 4061018 4061019 rs139998311 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 615 chr1 4061354 4061355 rs6670453 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 1792.000000,3216.000000, 0.357827,0.642173, maf-5-some-pop,maf-5-all-pops 615 chr1 4061369 4061370 rs6672877 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 3237.000000,1771.000000, 0.646366,0.353634, maf-5-some-pop,maf-5-all-pops 615 chr1 4061376 4061377 rs12045715 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,SC_SNP,SSMP,TISHKOFF, 2 A,G, 963.000000,4045.000000, 0.192292,0.807708, maf-5-some-pop 615 chr1 4061427 4061428 rs12743513 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2561.000000,2447.000000, 0.511382,0.488618, maf-5-some-pop,maf-5-all-pops 615 chr1 4061553 4061554 rs139101420 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, 615 chr1 4061571 4061572 rs72852506 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4613.000000,395.000000, 0.921126,0.078874, maf-5-some-pop 615 chr1 4061607 4061608 rs12045781 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 973.000000,4035.000000, 0.194289,0.805711, maf-5-some-pop 615 chr1 4061687 4061688 rs10799247 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3217.000000,1791.000000, 0.642372,0.357628, maf-5-some-pop,maf-5-all-pops 615 chr1 4061802 4061803 rs77506630 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 615 chr1 4061952 4061953 rs74561326 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4762.000000,246.000000, 0.950879,0.049121, maf-5-some-pop 615 chr1 4062138 4062139 rs11810393 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 712.000000,4296.000000, 0.142173,0.857827, maf-5-some-pop 615 chr1 4062149 4062150 rs4654565 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3548.000000,1460.000000, 0.708466,0.291534, maf-5-some-pop 615 chr1 4062278 4062279 rs58822993 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4198.000000,810.000000, 0.838259,0.161741, maf-5-some-pop 615 chr1 4062431 4062432 rs72629511 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 615 chr1 4062729 4062730 rs78082845 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB, 2 C,T, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 615 chr1 4062842 4062843 rs4654448 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 522.000000,4486.000000, 0.104233,0.895767, maf-5-some-pop,maf-5-all-pops 615 chr1 4062897 4062898 rs56962648 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4132.000000,876.000000, 0.825080,0.174920, maf-5-some-pop 615 chr1 4062995 4062996 rs4654567 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4344.000000,664.000000, 0.867412,0.132588, maf-5-some-pop 615 chr1 4063019 4063020 rs79867362 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 615 chr1 4063038 4063039 rs4654449 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4488.000000,520.000000, 0.896166,0.103834, maf-5-some-pop 615 chr1 4063123 4063124 rs115360155 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 616 chr1 4063367 4063368 rs58780785 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4282.000000,726.000000, 0.855032,0.144968, maf-5-some-pop 616 chr1 4063446 4063447 rs7520607 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1750.000000,3258.000000, 0.349441,0.650559, maf-5-some-pop,maf-5-all-pops 616 chr1 4063746 4063747 rs4654568 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4491.000000,517.000000, 0.896765,0.103235, maf-5-some-pop,maf-5-all-pops 616 chr1 4063765 4063766 rs12027462 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3246.000000,1762.000000, 0.648163,0.351837, maf-5-some-pop,maf-5-all-pops 616 chr1 4063923 4063924 rs4654451 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1254.000000,3754.000000, 0.250399,0.749601, maf-5-some-pop 616 chr1 4064103 4064104 rs10915570 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 2564.000000,2444.000000, 0.511981,0.488019, maf-5-some-pop,maf-5-all-pops 616 chr1 4064436 4064437 rs79347929 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4810.000000,198.000000, 0.960463,0.039537, maf-5-some-pop,maf-5-all-pops 616 chr1 4064514 4064515 rs7516738 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4512.000000,496.000000, 0.900958,0.099041, maf-5-some-pop,maf-5-all-pops 616 chr1 4064782 4064783 rs6426429 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3202.000000,1806.000000, 0.639377,0.360623, maf-5-some-pop,maf-5-all-pops 616 chr1 4064808 4064829 rs138792175 0 + TGTCTGGGGCTAAGGGGCCAG TGTCTGGGGCTAAGGGGCCAG -/TGTCTGGGGCTAAGGGGCCAG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,TGTCTGGGGCTAAGGGGCCAG, 231.000000,4777.000000, 0.046126,0.953874, 616 chr1 4064841 4064842 rs74048782 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4372.000000,636.000000, 0.873003,0.126997, maf-5-some-pop,maf-5-all-pops 616 chr1 4064985 4064986 rs56048591 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4733.000000,275.000000, 0.945088,0.054912, maf-5-some-pop 616 chr1 4064996 4064997 rs11802469 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3946.000000,1062.000000, 0.787939,0.212061, maf-5-some-pop,maf-5-all-pops 616 chr1 4065031 4065032 rs12091143 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1162.000000,3846.000000, 0.232029,0.767971, maf-5-some-pop,maf-5-all-pops 616 chr1 4065271 4065272 rs4074993 0 - C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 616 chr1 4065355 4065356 rs12028658 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4408.000000,600.000000, 0.880192,0.119808, maf-5-some-pop,maf-5-all-pops 616 chr1 4065659 4065660 rs12723273 0 + G G G/T genomic single by-cluster,by-frequency,by-hapmap 0.023416 0.105639 unknown exact 1 3 ENSEMBL,HUMANGENOME_JCVI,SSAHASNP, 2 G,T, 417.000000,5.000000, 0.988152,0.011848, 616 chr1 4065675 4065676 rs57323923 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2302.000000,2706.000000, 0.459665,0.540335, maf-5-some-pop,maf-5-all-pops 616 chr1 4066116 4066117 rs141992779 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,EVA-GONL,GMI, 2 C,T, 1103.000000,3905.000000, 0.220248,0.779752, 616 chr1 4066166 4066167 rs7414863 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,C, 2165.000000,2843.000000, 0.432308,0.567692, 616 chr1 4066176 4066177 rs140324211 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 616 chr1 4066510 4066511 rs151133362 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 616 chr1 4066679 4066680 rs3935559 0 - C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 616 chr1 4066955 4066956 rs68085961 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1118.000000,3890.000000, 0.223243,0.776757, maf-5-some-pop,maf-5-all-pops 616 chr1 4067247 4067250 rs139826682 0 + AGA AGA -/AGA genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AGA, 1106.000000,3902.000000, 0.220847,0.779153, 616 chr1 4067341 4067342 rs12025250 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop,maf-5-all-pops 616 chr1 4067416 4067417 rs142012663 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, 616 chr1 4067433 4067434 rs12747294 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3896.000000,1112.000000, 0.777955,0.222045, 616 chr1 4067501 4067502 rs527403867 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSIP, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 616 chr1 4067511 4067512 rs6702213 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3899.000000,1109.000000, 0.778554,0.221446, 616 chr1 4067535 4067536 rs12063929 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3919.000000,1089.000000, 0.782548,0.217452, 616 chr1 4067544 4067545 rs6675434 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,HGSV,PJP,SSAHASNP,SSMP, 2 A,G, 1078.000000,3930.000000, 0.215256,0.784744, 616 chr1 4067573 4067574 rs12747604 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3928.000000,1080.000000, 0.784345,0.215655, 616 chr1 4067583 4067584 rs56081307 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 A,C, 1067.000000,3941.000000, 0.213059,0.786941, 616 chr1 4067597 4067598 rs6661363 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 C,T, 1080.000000,3928.000000, 0.215655,0.784345, 616 chr1 4068051 4068052 rs6675979 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 2192.000000,2816.000000, 0.437700,0.562300, maf-5-some-pop,maf-5-all-pops 616 chr1 4068145 4068146 rs12731145 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3895.000000,1113.000000, 0.777756,0.222244, maf-5-some-pop,maf-5-all-pops 616 chr1 4068212 4068213 rs6426431 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2491.000000,2517.000000, 0.497404,0.502596, maf-5-some-pop,maf-5-all-pops 616 chr1 4068244 4068245 rs12744667 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1096.000000,3912.000000, 0.218850,0.781150, maf-5-some-pop,maf-5-all-pops 616 chr1 4068300 4068301 rs76899422 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 616 chr1 4068319 4068320 rs6703103 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3937.000000,1071.000000, 0.786142,0.213858, maf-5-some-pop,maf-5-all-pops 616 chr1 4068336 4068337 rs6703106 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3939.000000,1069.000000, 0.786542,0.213458, maf-5-some-pop,maf-5-all-pops 616 chr1 4068478 4068479 rs77828611 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 616 chr1 4068676 4068677 rs12753281 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,G, 3906.000000,1102.000000, 0.779952,0.220048, 616 chr1 4068720 4068721 rs12736036 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 3905.000000,1103.000000, 0.779752,0.220248, maf-5-some-pop,maf-5-all-pops 616 chr1 4068860 4068861 rs116067164 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 616 chr1 4068865 4068866 rs34940664 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 3906.000000,1102.000000, 0.779952,0.220048, maf-5-some-pop,maf-5-all-pops 616 chr1 4068892 4068893 rs35749996 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3907.000000,1101.000000, 0.780152,0.219848, maf-5-some-pop,maf-5-all-pops 616 chr1 4068907 4068908 rs12753644 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3907.000000,1101.000000, 0.780152,0.219848, maf-5-some-pop,maf-5-all-pops 616 chr1 4068997 4068998 rs12045134 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3906.000000,1102.000000, 0.779952,0.220048, maf-5-some-pop,maf-5-all-pops 616 chr1 4069088 4069089 rs12047590 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3905.000000,1103.000000, 0.779752,0.220248, maf-5-some-pop,maf-5-all-pops 616 chr1 4069099 4069100 rs12027274 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop,maf-5-all-pops 616 chr1 4069147 4069148 rs12027284 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3906.000000,1102.000000, 0.779952,0.220048, maf-5-some-pop,maf-5-all-pops 616 chr1 4069360 4069361 rs12045225 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3905.000000,1103.000000, 0.779752,0.220248, maf-5-some-pop,maf-5-all-pops 616 chr1 4069530 4069531 rs12046014 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3911.000000,1097.000000, 0.780950,0.219050, maf-5-some-pop,maf-5-all-pops 616 chr1 4069579 4069580 rs12044268 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1095.000000,3913.000000, 0.218650,0.781350, maf-5-some-pop,maf-5-all-pops 616 chr1 4069582 4069583 rs74048784 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 C,T, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 616 chr1 4069583 4069584 rs12048464 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3913.000000,1095.000000, 0.781350,0.218650, maf-5-some-pop,maf-5-all-pops 616 chr1 4069643 4069644 rs12028147 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1100.000000,3908.000000, 0.219649,0.780351, maf-5-some-pop,maf-5-all-pops 616 chr1 4069870 4069871 rs35514116 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1099.000000,3909.000000, 0.219449,0.780551, maf-5-some-pop,maf-5-all-pops 616 chr1 4069877 4069878 rs35902612 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3909.000000,1099.000000, 0.780551,0.219449, maf-5-some-pop,maf-5-all-pops 616 chr1 4069974 4069975 rs34306433 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 1102.000000,3906.000000, 0.220048,0.779952, maf-5-some-pop,maf-5-all-pops 616 chr1 4070331 4070332 rs34458454 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1102.000000,3906.000000, 0.220048,0.779952, maf-5-some-pop,maf-5-all-pops 616 chr1 4070394 4070395 rs34994381 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1103.000000,3905.000000, 0.220248,0.779752, maf-5-some-pop,maf-5-all-pops 616 chr1 4070395 4070396 rs79377423 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, maf-5-some-pop,maf-5-all-pops 616 chr1 4070570 4070571 rs35579324 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,T, 3906.000000,1102.000000, 0.779952,0.220048, maf-5-some-pop,maf-5-all-pops 616 chr1 4070587 4070588 rs35474759 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3906.000000,1102.000000, 0.779952,0.220048, maf-5-some-pop,maf-5-all-pops 616 chr1 4070981 4070982 rs12049555 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1102.000000,3906.000000, 0.220048,0.779952, maf-5-some-pop,maf-5-all-pops 616 chr1 4071051 4071052 rs6664533 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3906.000000,1102.000000, 0.779952,0.220048, maf-5-some-pop,maf-5-all-pops 616 chr1 4071099 4071100 rs61219839 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4661.000000,347.000000, 0.930711,0.069289, maf-5-some-pop,maf-5-all-pops 616 chr1 4071149 4071150 rs6664655 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3899.000000,1109.000000, 0.778554,0.221446, maf-5-some-pop,maf-5-all-pops 616 chr1 4071163 4071164 rs6686502 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1109.000000,3899.000000, 0.221446,0.778554, maf-5-some-pop,maf-5-all-pops 616 chr1 4071191 4071192 rs6672264 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1106.000000,3902.000000, 0.220847,0.779153, maf-5-some-pop,maf-5-all-pops 616 chr1 4071208 4071209 rs12124643 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4071.000000,937.000000, 0.812899,0.187101, maf-5-some-pop,maf-5-all-pops 616 chr1 4071334 4071335 rs6686709 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 1102.000000,3906.000000, 0.220048,0.779952, maf-5-some-pop,maf-5-all-pops 616 chr1 4071398 4071399 rs6680847 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2431.000000,2577.000000, 0.485423,0.514577, maf-5-some-pop,maf-5-all-pops 616 chr1 4071434 4071435 rs114131883 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 616 chr1 4071569 4071570 rs6675053 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2761.000000,2247.000000, 0.551318,0.448682, maf-5-some-pop,maf-5-all-pops 616 chr1 4071886 4071887 rs200419272 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,BILGI_BIOE,LUNTER,SSMP,TISHKOFF, 2 -,T, 1102.000000,3906.000000, 0.220048,0.779952, 616 chr1 4072095 4072095 rs56102422 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,T, 3910.000000,1098.000000, 0.780751,0.219249, 616 chr1 4072275 4072276 rs55745368 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1102.000000,3906.000000, 0.220048,0.779952, maf-5-some-pop,maf-5-all-pops 616 chr1 4072307 4072308 rs4654458 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3228.000000,1780.000000, 0.644569,0.355431, maf-5-some-pop,maf-5-all-pops 616 chr1 4072314 4072315 rs12117500 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,maf-5-all-pops 616 chr1 4072328 4072329 rs7414301 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1103.000000,3905.000000, 0.220248,0.779752, maf-5-some-pop,maf-5-all-pops 616 chr1 4072524 4072525 rs116132011 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 616 chr1 4072892 4072893 rs10915589 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2771.000000,2237.000000, 0.553315,0.446685, maf-5-some-pop,maf-5-all-pops 616 chr1 4072920 4072921 rs12126679 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3983.000000,1025.000000, 0.795327,0.204673, maf-5-some-pop,maf-5-all-pops 616 chr1 4072993 4072993 rs143561455 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,T, 4791.000000,217.000000, 0.956669,0.043331, 616 chr1 4073349 4073350 rs12023479 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1103.000000,3905.000000, 0.220248,0.779752, maf-5-some-pop,maf-5-all-pops 616 chr1 4073431 4073432 rs67794820 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3903.000000,1105.000000, 0.779353,0.220647, 616 chr1 4073465 4073466 rs56005924 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1795.000000,3213.000000, 0.358427,0.641573, 616 chr1 4073493 4073494 rs186166038 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 616 chr1 4073574 4073575 rs6696138 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,PJP,SSMP,TISHKOFF, 2 A,G, 1059.000000,3949.000000, 0.211462,0.788538, maf-5-some-pop,maf-5-all-pops 616 chr1 4073645 4073646 rs72629531 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1102.000000,3906.000000, 0.220048,0.779952, maf-5-some-pop,maf-5-all-pops 616 chr1 4074014 4074015 rs4654459 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1114.000000,3894.000000, 0.222444,0.777556, maf-5-some-pop,maf-5-all-pops 616 chr1 4074142 4074143 rs72629532 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3894.000000,1114.000000, 0.777556,0.222444, maf-5-some-pop,maf-5-all-pops 616 chr1 4074342 4074343 rs67296537 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 1115.000000,3893.000000, 0.222644,0.777356, 616 chr1 4074378 4074379 rs35998568 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1116.000000,3892.000000, 0.222843,0.777157, maf-5-some-pop,maf-5-all-pops 616 chr1 4074515 4074516 rs57696600 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3893.000000,1115.000000, 0.777356,0.222644, maf-5-some-pop,maf-5-all-pops 616 chr1 4074730 4074731 rs142694757 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,T, 1118.000000,3890.000000, 0.223243,0.776757, 616 chr1 4074746 4074747 rs56850651 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK, 2 C,T, 261.000000,4747.000000, 0.052117,0.947883, maf-5-some-pop,maf-5-all-pops 616 chr1 4074753 4074754 rs4457544 0 - A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 616 chr1 4074867 4074868 rs115942734 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4947.000000,61.000000, 0.987819,0.012180, 616 chr1 4074985 4074986 rs12025374 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1116.000000,3892.000000, 0.222843,0.777157, maf-5-some-pop,maf-5-all-pops 616 chr1 4075230 4075231 rs12049502 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1116.000000,3892.000000, 0.222843,0.777157, 616 chr1 4075519 4075520 rs146451123 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,PJP,SSMP,TISHKOFF,WARNICH_LAB, 2 -,T, 1545.000000,3463.000000, 0.308506,0.691494, 616 chr1 4075810 4075811 rs139787970 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 616 chr1 4075860 4075861 rs34928897 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3892.000000,1116.000000, 0.777157,0.222843, maf-5-some-pop,maf-5-all-pops 616 chr1 4075968 4075969 rs12060834 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2255.000000,2753.000000, 0.450280,0.549720, maf-5-some-pop,maf-5-all-pops 616 chr1 4076043 4076044 rs12026411 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3891.000000,1117.000000, 0.776957,0.223043, maf-5-some-pop,maf-5-all-pops 616 chr1 4076256 4076257 rs12034312 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3890.000000,1118.000000, 0.776757,0.223243, maf-5-some-pop,maf-5-all-pops 616 chr1 4076360 4076384 rs144669861 0 + TCCAGCTGTTGGACTGGCAAACAG TCCAGCTGTTGGACTGGCAAACAG -/TCCAGCTGTTGGACTGGCAAACAG genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,GMI,LUNTER, 2 -,TCCAGCTGTTGGACTGGCAAACAG, 1066.000000,3942.000000, 0.212859,0.787141, 616 chr1 4076372 4076373 rs72852529 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SSMP,TISHKOFF, 2 A,G, 3996.000000,1012.000000, 0.797923,0.202077, 616 chr1 4076528 4076529 rs35297022 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1116.000000,3892.000000, 0.222843,0.777157, maf-5-some-pop,maf-5-all-pops 616 chr1 4076533 4076534 rs35043594 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 3892.000000,1116.000000, 0.777157,0.222843, maf-5-some-pop,maf-5-all-pops 616 chr1 4076645 4076646 rs34448752 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3891.000000,1117.000000, 0.776957,0.223043, maf-5-some-pop,maf-5-all-pops 616 chr1 4076706 4076707 rs66488358 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 C,T, 3891.000000,1117.000000, 0.776957,0.223043, 616 chr1 4076797 4076798 rs35326871 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3890.000000,1118.000000, 0.776757,0.223243, maf-5-some-pop,maf-5-all-pops 616 chr1 4077142 4077143 rs376526303 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,LUNTER,SSIP, 2 -,G, 1116.000000,3892.000000, 0.222843,0.777157, 616 chr1 4077290 4077291 rs10915596 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2751.000000,2257.000000, 0.549321,0.450679, maf-5-some-pop,maf-5-all-pops 616 chr1 4077320 4077321 rs78319330 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4785.000000,223.000000, 0.955471,0.044529, maf-5-some-pop,maf-5-all-pops 616 chr1 4077592 4077593 rs4654599 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2436.000000,2572.000000, 0.486422,0.513578, maf-5-some-pop,maf-5-all-pops 616 chr1 4077680 4077681 rs4654600 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1162.000000,3846.000000, 0.232029,0.767971, maf-5-some-pop 616 chr1 4077706 4077707 rs4654601 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1163.000000,3845.000000, 0.232228,0.767772, maf-5-some-pop,maf-5-all-pops 616 chr1 4077924 4077925 rs59524797 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop,maf-5-all-pops 616 chr1 4078089 4078090 rs4654604 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1649.000000,3359.000000, 0.329273,0.670727, maf-5-some-pop,maf-5-all-pops 616 chr1 4078370 4078371 rs4129099 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1166.000000,3842.000000, 0.232827,0.767173, maf-5-some-pop,maf-5-all-pops 616 chr1 4078447 4078448 rs4129100 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2752.000000,2256.000000, 0.549521,0.450479, maf-5-some-pop,maf-5-all-pops 616 chr1 4078775 4078776 rs16840634 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop 616 chr1 4079126 4079127 rs12127463 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 3984.000000,1024.000000, 0.795527,0.204473, maf-5-some-pop 616 chr1 4079587 4079588 rs5016503 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop,maf-5-all-pops 616 chr1 4080278 4080279 rs12059072 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SC_SNP, 2 A,G, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop 616 chr1 4080741 4080742 rs12026010 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP, 2 A,G, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop,maf-5-all-pops 616 chr1 4080777 4080778 rs147899891 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 616 chr1 4080885 4080886 rs35182639 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1107.000000,3901.000000, 0.221046,0.778954, maf-5-some-pop,maf-5-all-pops 616 chr1 4081121 4081122 rs12747944 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1063.000000,3945.000000, 0.212260,0.787740, maf-5-some-pop 616 chr1 4081333 4081337 rs138911134 0 + ACAG ACAG -/ACAG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,ACAG, 51.000000,4957.000000, 0.010184,0.989816, 616 chr1 4081726 4081727 rs181294643 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 616 chr1 4082086 4082087 rs10799260 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,SC_SNP,SSMP, 2 C,T, 2547.000000,2461.000000, 0.508586,0.491414, maf-5-some-pop,maf-5-all-pops 616 chr1 4082104 4082105 rs10915600 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 895.000000,4113.000000, 0.178714,0.821286, maf-5-some-pop 616 chr1 4082190 4082191 rs10753384 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2253.000000,2755.000000, 0.449880,0.550120, maf-5-some-pop,maf-5-all-pops 616 chr1 4082366 4082367 rs10799261 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2427.000000,2581.000000, 0.484625,0.515375, maf-5-some-pop,maf-5-all-pops 616 chr1 4082726 4082727 rs12025543 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 A,C, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 616 chr1 4083055 4083056 rs16840665 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 949.000000,4059.000000, 0.189497,0.810503, maf-5-some-pop 616 chr1 4083348 4083349 rs12036066 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 616 chr1 4083464 4083465 rs60159819 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,T, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop,maf-5-all-pops 616 chr1 4083645 4083646 rs59428740 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 4747.000000,261.000000, 0.947883,0.052117, maf-5-some-pop,maf-5-all-pops 616 chr1 4083880 4083881 rs75632185 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop,maf-5-all-pops 616 chr1 4084031 4084032 rs75862555 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 616 chr1 4084075 4084076 rs148360472 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, 616 chr1 4084303 4084304 rs7418256 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2565.000000,2443.000000, 0.512181,0.487819, maf-5-some-pop,maf-5-all-pops 616 chr1 4084531 4084532 rs74048786 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop,maf-5-all-pops 616 chr1 4084541 4084542 rs116373760 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4938.000000,70.000000, 0.986022,0.013978, 616 chr1 4084620 4084621 rs12027593 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 616 chr1 4084691 4084692 rs76371537 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4717.000000,291.000000, 0.941893,0.058107, maf-5-some-pop,maf-5-all-pops 616 chr1 4084805 4084806 rs12037888 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop 616 chr1 4084891 4084891 rs71580237 0 + - - -/TCTA genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,HUMANGENOME_JCVI,LUNTER, 2 -,TCTA, 3933.000000,1075.000000, 0.785343,0.214657, 616 chr1 4084902 4084903 rs149968074 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, 616 chr1 4084960 4084960 rs59944286 0 + - - -/CT genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,EVA-GONL,GMI,LUNTER, 2 -,CT, 4787.000000,221.000000, 0.955871,0.044129, 616 chr1 4085049 4085053 rs140506049 0 + ATCT ATCT -/ATCT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,ATCT, 223.000000,4785.000000, 0.044529,0.955471, 616 chr1 4085071 4085072 rs145068626 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, 616 chr1 4085097 4085098 rs6426436 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3918.000000,1090.000000, 0.782348,0.217652, maf-5-some-pop,maf-5-all-pops 616 chr1 4085117 4085117 rs376139784 0 + - - -/CTAT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,CTAT, 4791.000000,217.000000, 0.956669,0.043331, 616 chr1 4085129 4085129 rs145036887 0 + - - -/TATC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,TATC, 4787.000000,221.000000, 0.955871,0.044129, 616 chr1 4085169 4085173 rs141503352 0 + TATC TATC -/TATC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,TATC, 224.000000,4784.000000, 0.044728,0.955272, 616 chr1 4085299 4085300 rs76432905 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, 616 chr1 4085343 4085344 rs143282186 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, 616 chr1 4085514 4085515 rs138442147 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 616 chr1 4085542 4085543 rs12026862 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 221.000000,4787.000000, 0.044129,0.955871, maf-5-some-pop 616 chr1 4085581 4085582 rs12026892 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 221.000000,4787.000000, 0.044129,0.955871, maf-5-some-pop 616 chr1 4085900 4085901 rs4654611 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1091.000000,3917.000000, 0.217851,0.782149, maf-5-some-pop 616 chr1 4085950 4085951 rs4654612 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3918.000000,1090.000000, 0.782348,0.217652, maf-5-some-pop 616 chr1 4086007 4086008 rs78629421 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 616 chr1 4086274 4086275 rs575045972 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 487.000000,4521.000000, 0.097244,0.902756, 616 chr1 4087068 4087069 rs79932241 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 616 chr1 4087336 4087337 rs114620780 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4934.000000,74.000000, 0.985224,0.014776, 616 chr1 4087707 4087708 rs57920188 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 1784.000000,3224.000000, 0.356230,0.643770, maf-5-some-pop,maf-5-all-pops 616 chr1 4087764 4087765 rs72852539 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1215.000000,3793.000000, 0.242612,0.757388, maf-5-some-pop,maf-5-all-pops 616 chr1 4087809 4087810 rs115201152 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 616 chr1 4088156 4088157 rs76188031 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 616 chr1 4088479 4088480 rs74048788 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop,maf-5-all-pops 616 chr1 4088765 4088766 rs34649702 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,C, 4612.000000,396.000000, 0.920927,0.079074, maf-5-some-pop,maf-5-all-pops 616 chr1 4088843 4088844 rs55889146 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,T, 908.000000,4100.000000, 0.181310,0.818690, maf-5-some-pop,maf-5-all-pops 616 chr1 4089243 4089244 rs10915642 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops 616 chr1 4089258 4089259 rs12062024 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1259.000000,3749.000000, 0.251398,0.748602, maf-5-some-pop 616 chr1 4089605 4089606 rs146266961 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 616 chr1 4089612 4089613 rs12080516 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3751.000000,1257.000000, 0.749002,0.250998, maf-5-some-pop 616 chr1 4089696 4089697 rs12080562 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1474.000000,3534.000000, 0.294329,0.705671, maf-5-some-pop,maf-5-all-pops 616 chr1 4089813 4089814 rs34117538 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 1257.000000,3751.000000, 0.250998,0.749002, 616 chr1 4089884 4089885 rs35412083 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 736.000000,4272.000000, 0.146965,0.853035, maf-5-some-pop,maf-5-all-pops 616 chr1 4089914 4089916 rs57850535 0 + TT TT -/TT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,GMI,HGSV,SSMP, 2 -,TT, 1485.000000,3523.000000, 0.296526,0.703474, 616 chr1 4090471 4090472 rs74224227 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop,maf-5-all-pops 616 chr1 4090585 4090586 rs34385055 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 520.000000,4488.000000, 0.103834,0.896166, 616 chr1 4090711 4090712 rs10915650 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2024.000000,2984.000000, 0.404153,0.595847, 616 chr1 4091071 4091072 rs4654614 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2983.000000,2025.000000, 0.595647,0.404353, maf-5-some-pop,maf-5-all-pops 616 chr1 4091330 4091331 rs61127214 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 616 chr1 4091560 4091561 rs59845410 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 616 chr1 4091649 4091650 rs12068729 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 3748.000000,1260.000000, 0.748403,0.251597, maf-5-some-pop 616 chr1 4092053 4092054 rs57277002 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 1497.000000,3511.000000, 0.298922,0.701078, maf-5-some-pop,maf-5-all-pops 616 chr1 4092077 4092078 rs9426485 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 G,T, 4904.000000,104.000000, 0.979233,0.020767, 616 chr1 4092145 4092146 rs58051771 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1477.000000,3531.000000, 0.294928,0.705072, maf-5-some-pop,maf-5-all-pops 616 chr1 4092437 4092438 rs74048790 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop,maf-5-all-pops 616 chr1 4092460 4092461 rs59744446 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 616 chr1 4092537 4092538 rs12028583 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop 616 chr1 4092920 4092921 rs10915658 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1481.000000,3527.000000, 0.295727,0.704273, maf-5-some-pop 616 chr1 4092925 4092926 rs12128330 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1262.000000,3746.000000, 0.251997,0.748003, maf-5-some-pop,maf-5-all-pops 616 chr1 4092941 4092942 rs78561413 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 616 chr1 4092948 4092949 rs10915659 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1479.000000,3529.000000, 0.295327,0.704673, maf-5-some-pop,maf-5-all-pops 616 chr1 4092952 4092953 rs12128332 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1261.000000,3747.000000, 0.251797,0.748203, maf-5-some-pop 616 chr1 4092986 4092987 rs78036575 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4858.000000,150.000000, 0.970048,0.029952, maf-5-some-pop,maf-5-all-pops 616 chr1 4093005 4093006 rs34160796 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4488.000000,520.000000, 0.896166,0.103834, maf-5-some-pop,maf-5-all-pops 616 chr1 4093228 4093229 rs114921061 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 616 chr1 4093262 4093263 rs10915661 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2983.000000,2025.000000, 0.595647,0.404353, maf-5-some-pop,maf-5-all-pops 616 chr1 4093349 4093350 rs12030507 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 4789.000000,219.000000, 0.956270,0.043730, maf-5-some-pop,maf-5-all-pops 616 chr1 4093448 4093449 rs12041356 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 616 chr1 4093502 4093503 rs12041382 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop 616 chr1 4093534 4093535 rs12033715 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop 616 chr1 4093537 4093538 rs10799273 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2984.000000,2024.000000, 0.595847,0.404153, maf-5-some-pop,maf-5-all-pops 616 chr1 4093554 4093555 rs55877711 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop,maf-5-all-pops 616 chr1 4093628 4093629 rs12041420 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 616 chr1 4093699 4093700 rs10915664 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1252.000000,3756.000000, 0.250000,0.750000, maf-5-some-pop,maf-5-all-pops 616 chr1 4093716 4093717 rs10915665 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4163.000000,845.000000, 0.831270,0.168730, maf-5-some-pop,maf-5-all-pops 616 chr1 4093800 4093801 rs59539916 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,TISHKOFF, 2 G,T, 1262.000000,3746.000000, 0.251997,0.748003, maf-5-some-pop,maf-5-all-pops 616 chr1 4094067 4094068 rs12137595 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4629.000000,379.000000, 0.924321,0.075679, maf-5-some-pop 616 chr1 4094091 4094092 rs60561351 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 219.000000,4789.000000, 0.043730,0.956270, maf-5-some-pop,maf-5-all-pops 616 chr1 4094093 4094094 rs111383652 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,ILLUMINA, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 616 chr1 4094100 4094101 rs12129515 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1477.000000,3531.000000, 0.294928,0.705072, maf-5-some-pop,maf-5-all-pops 616 chr1 4094429 4094430 rs78425991 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 616 chr1 4095062 4095063 rs4654469 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop,maf-5-all-pops 616 chr1 4095338 4095339 rs58530053 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 616 chr1 4095493 4095495 rs200234030 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AT, 1263.000000,3745.000000, 0.252196,0.747804, 616 chr1 4095580 4095581 rs7412438 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 3749.000000,1259.000000, 0.748602,0.251398, maf-5-some-pop,maf-5-all-pops 616 chr1 4095749 4095750 rs12409038 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,G, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop 616 chr1 4095845 4095845 rs201267245 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,G, 3089.000000,1919.000000, 0.616813,0.383187, 616 chr1 4096027 4096028 rs4272590 0 - G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 616 chr1 4096443 4096444 rs111864782 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 616 chr1 4096535 4096536 rs7555483 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 859.000000,4149.000000, 0.171526,0.828474, 616 chr1 4096609 4096610 rs113859684 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 469.000000,4539.000000, 0.093650,0.906350, 616 chr1 4096670 4096671 rs78518153 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 616 chr1 4096735 4096736 rs138339611 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 616 chr1 4096847 4096848 rs79157286 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 616 chr1 4096929 4096930 rs59334859 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4149.000000,859.000000, 0.828474,0.171526, maf-5-some-pop 616 chr1 4096955 4096956 rs7555868 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 816.000000,4192.000000, 0.162939,0.837061, maf-5-some-pop 616 chr1 4096998 4096999 rs12029034 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, 616 chr1 4097011 4097012 rs7519769 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4148.000000,860.000000, 0.828275,0.171725, 616 chr1 4097020 4097021 rs59310770 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop,maf-5-all-pops 616 chr1 4097079 4097079 rs368823480 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,HGSV,LUNTER, 2 -,C, 4149.000000,859.000000, 0.828474,0.171526, 616 chr1 4097090 4097091 rs61165100 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,HGSV, 2 C,G, 1078.000000,3930.000000, 0.215256,0.784744, 616 chr1 4097092 4097092 rs59726247 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,GMI,HGSV,LUNTER,SSMP, 2 -,A, 3930.000000,1078.000000, 0.784744,0.215256, 616 chr1 4097151 4097152 rs58758185 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 616 chr1 4097542 4097543 rs8179324 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1083.000000,3925.000000, 0.216254,0.783746, maf-5-some-pop 616 chr1 4097560 4097561 rs112411703 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 221.000000,4787.000000, 0.044129,0.955871, 616 chr1 4097705 4097706 rs80110036 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4901.000000,107.000000, 0.978634,0.021366, 616 chr1 4098220 4098221 rs12028703 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3931.000000,1077.000000, 0.784944,0.215056, 616 chr1 4098419 4098432 rs200189096 0 + CCTTTCACAATAG CCTTTCACAATAG -/CCTTTCACAATAG genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CCTTTCACAATAG, 219.000000,4789.000000, 0.043730,0.956270, 616 chr1 4098477 4098478 rs7516695 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3997.000000,1011.000000, 0.798123,0.201877, 616 chr1 4098696 4098696 rs138255942 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 2994.000000,2014.000000, 0.597843,0.402157, 616 chr1 4099029 4099030 rs8179288 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1129.000000,3879.000000, 0.225439,0.774561, maf-5-some-pop 616 chr1 4099686 4099687 rs61170540 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop 616 chr1 4099792 4099793 rs61275689 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop,maf-5-all-pops 616 chr1 4099949 4099950 rs72852566 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop 616 chr1 4099984 4099985 rs72852568 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4148.000000,860.000000, 0.828275,0.171725, maf-5-some-pop 616 chr1 4100026 4100027 rs75901952 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 616 chr1 4100054 4100055 rs76699481 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop,maf-5-all-pops 616 chr1 4100160 4100161 rs34184911 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,A, 2025.000000,2983.000000, 0.404353,0.595647, 616 chr1 4100207 4100208 rs113148751 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4145.000000,863.000000, 0.827676,0.172324, 616 chr1 4100303 4100304 rs10753345 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4627.000000,381.000000, 0.923922,0.076078, 616 chr1 4100387 4100388 rs11484692 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,SC_SNP,TISHKOFF, 2 C,T, 4148.000000,860.000000, 0.828275,0.171725, 616 chr1 4100489 4100490 rs10915304 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 3039.000000,1969.000000, 0.606829,0.393171, 616 chr1 4100612 4100612 rs534720478 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,A, 3941.000000,1067.000000, 0.786941,0.213059, 616 chr1 4100672 4100673 rs183199706 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 54.000000,4954.000000, 0.010783,0.989217, 616 chr1 4100711 4100712 rs11487451 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 A,C, 168.000000,4840.000000, 0.033546,0.966454, 616 chr1 4100744 4100745 rs11487452 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,SC_SNP,SSMP, 2 A,G, 4148.000000,860.000000, 0.828275,0.171725, 616 chr1 4100858 4100859 rs11487453 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,JMKIDD_LAB,SC_SNP, 2 C,T, 4840.000000,168.000000, 0.966454,0.033546, 616 chr1 4101069 4101070 rs113192578 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 1077.000000,3931.000000, 0.215056,0.784944, 616 chr1 4101083 4101084 rs147405285 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 616 chr1 4101105 4101106 rs113198145 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 860.000000,4148.000000, 0.171725,0.828275, 616 chr1 4101353 4101354 rs113585937 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 3931.000000,1077.000000, 0.784944,0.215056, 616 chr1 4101695 4101696 rs7539906 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,WI_SSAHASNP, 2 A,C, 4613.000000,395.000000, 0.921126,0.078874, 616 chr1 4101696 4101697 rs35079847 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 C,T, 892.000000,4116.000000, 0.178115,0.821885, 616 chr1 4101936 4101937 rs7542943 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,WI_SSAHASNP, 2 C,T, 860.000000,4148.000000, 0.171725,0.828275, 616 chr1 4102053 4102054 rs7540209 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 A,C, 4148.000000,860.000000, 0.828275,0.171725, 616 chr1 4102182 4102183 rs143734524 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 616 chr1 4102261 4102262 rs10915305 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,SC_SNP, 2 C,T, 834.000000,4174.000000, 0.166534,0.833466, 616 chr1 4102262 4102263 rs10915306 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,SC_SNP, 2 A,G, 833.000000,4175.000000, 0.166334,0.833666, 616 chr1 4102549 4102550 rs9792845 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,WI_SSAHASNP, 2 A,T, 940.000000,4068.000000, 0.187700,0.812300, 616 chr1 4102588 4102589 rs57879678 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,HGSV, 2 A,C, 859.000000,4149.000000, 0.171526,0.828474, 616 chr1 4102645 4102646 rs57823095 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 847.000000,4161.000000, 0.169129,0.830871, 616 chr1 4102739 4102740 rs138142062 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 4600.000000,408.000000, 0.918530,0.081470, 616 chr1 4102798 4102799 rs28813173 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSAHASNP, 2 A,G, 395.000000,4613.000000, 0.078874,0.921126, 616 chr1 4102999 4103000 rs199878219 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 218.000000,4790.000000, 0.043530,0.956470, 616 chr1 4103011 4103012 rs376545106 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4941.000000,67.000000, 0.986621,0.013379, 616 chr1 4103166 4103167 rs7539155 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP,WI_SSAHASNP, 2 C,T, 3204.000000,1804.000000, 0.639776,0.360224, 616 chr1 4103386 4103387 rs112262601 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 95.000000,4913.000000, 0.018970,0.981030, 616 chr1 4103558 4103559 rs77513533 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop,maf-5-all-pops 616 chr1 4103608 4103609 rs77637207 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 4954.000000,54.000000, 0.989217,0.010783, 616 chr1 4103662 4103663 rs111854097 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 616 chr1 4103684 4103685 rs59416815 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 A,T, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop,maf-5-all-pops 616 chr1 4103775 4103776 rs57915608 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 A,T, 167.000000,4841.000000, 0.033347,0.966653, maf-5-some-pop,maf-5-all-pops 616 chr1 4103799 4103800 rs34911143 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,G, 4619.000000,389.000000, 0.922324,0.077676, maf-5-some-pop 616 chr1 4103821 4103822 rs12079493 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 957.000000,4051.000000, 0.191094,0.808906, maf-5-some-pop,maf-5-all-pops 616 chr1 4103929 4103930 rs68006181 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,TISHKOFF, 2 C,T, 976.000000,4032.000000, 0.194888,0.805112, maf-5-some-pop,maf-5-all-pops 616 chr1 4104071 4104072 rs60522686 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4282.000000,726.000000, 0.855032,0.144968, 616 chr1 4104072 4104073 rs58437180 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4791.000000,217.000000, 0.956669,0.043331, 616 chr1 4104196 4104197 rs61768776 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 616 chr1 4104245 4104246 rs12036981 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 765.000000,4243.000000, 0.152756,0.847244, 616 chr1 4104409 4104410 rs76179027 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 616 chr1 4104756 4104757 rs12036953 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4058.000000,950.000000, 0.810304,0.189696, maf-5-some-pop,maf-5-all-pops 616 chr1 4104787 4104788 rs75051681 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 369.000000,4639.000000, 0.073682,0.926318, maf-5-some-pop,maf-5-all-pops 616 chr1 4105103 4105104 rs10799154 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1435.000000,3573.000000, 0.286542,0.713458, maf-5-some-pop,maf-5-all-pops 616 chr1 4105138 4105139 rs10915318 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1017.000000,3991.000000, 0.203075,0.796925, maf-5-some-pop 616 chr1 4105294 4105295 rs76794083 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ENSEMBL,GMI, 2 A,T, 4285.000000,723.000000, 0.855631,0.144369, 616 chr1 4105295 4105296 rs76926270 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ENSEMBL, 2 A,T, 4616.000000,392.000000, 0.921725,0.078275, 616 chr1 4105364 4105365 rs5018353 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 918.000000,4090.000000, 0.183307,0.816693, maf-5-some-pop,maf-5-all-pops 616 chr1 4105404 4105405 rs5018352 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 960.000000,4048.000000, 0.191693,0.808307, 616 chr1 4105411 4105412 rs5018351 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 4049.000000,959.000000, 0.808506,0.191494, 616 chr1 4105420 4105421 rs5018350 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,CSHL-HAPMAP,EVA-GONL,TISHKOFF, 2 A,C, 4095.000000,913.000000, 0.817692,0.182308, 616 chr1 4105430 4105431 rs5018349 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4010.000000,998.000000, 0.800719,0.199281, maf-5-some-pop,maf-5-all-pops 616 chr1 4105434 4105435 rs5018348 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1066.000000,3942.000000, 0.212859,0.787141, maf-5-some-pop,maf-5-all-pops 616 chr1 4105588 4105589 rs34905442 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 616 chr1 4106097 4106098 rs114285762 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 169.000000,4839.000000, 0.033746,0.966254, 616 chr1 4106145 4106146 rs10915321 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 781.000000,4227.000000, 0.155950,0.844050, maf-5-some-pop,maf-5-all-pops 616 chr1 4106188 4106190 rs551916022 0 + AA AA -/AA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AA, 428.000000,4580.000000, 0.085463,0.914537, 616 chr1 4106240 4106241 rs78934198 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 616 chr1 4106491 4106492 rs114966311 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4904.000000,104.000000, 0.979233,0.020767, 616 chr1 4106564 4106565 rs72852581 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4899.000000,109.000000, 0.978235,0.021765, 616 chr1 4106581 4106582 rs117190632 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 69.000000,4939.000000, 0.013778,0.986222, 616 chr1 4106650 4106651 rs10753347 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1508.000000,3500.000000, 0.301118,0.698882, maf-5-some-pop,maf-5-all-pops 616 chr1 4106656 4106657 rs10753348 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3516.000000,1492.000000, 0.702077,0.297923, maf-5-some-pop,maf-5-all-pops 616 chr1 4106699 4106700 rs12033641 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4009.000000,999.000000, 0.800519,0.199481, maf-5-some-pop,maf-5-all-pops 616 chr1 4106986 4106987 rs10915323 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop 616 chr1 4107165 4107166 rs75864646 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop 616 chr1 4107237 4107238 rs115563135 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 616 chr1 4107306 4107307 rs78895756 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 616 chr1 4107344 4107345 rs56386903 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4245.000000,763.000000, 0.847644,0.152356, maf-5-some-pop,maf-5-all-pops 616 chr1 4107686 4107687 rs74048801 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4110.000000,898.000000, 0.820687,0.179313, maf-5-some-pop,maf-5-all-pops 616 chr1 4107721 4107722 rs76848901 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop,maf-5-all-pops 616 chr1 4107869 4107870 rs78025826 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 616 chr1 4108149 4108150 rs77495118 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop,maf-5-all-pops 616 chr1 4108281 4108282 rs4654402 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 C,T, 3652.000000,1356.000000, 0.729233,0.270767, maf-5-some-pop,maf-5-all-pops 616 chr1 4108404 4108405 rs4654472 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3077.000000,1931.000000, 0.614417,0.385583, maf-5-some-pop,maf-5-all-pops 616 chr1 4108506 4108507 rs79404438 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop,maf-5-all-pops 616 chr1 4108579 4108580 rs78250973 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4630.000000,378.000000, 0.924521,0.075479, maf-5-some-pop,maf-5-all-pops 616 chr1 4108731 4108732 rs113620801 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 616 chr1 4108750 4108751 rs76298758 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,JMKIDD_LAB, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 616 chr1 4109540 4109541 rs79428796 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 616 chr1 4109545 4109546 rs61768777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3684.000000,1324.000000, 0.735623,0.264377, maf-5-some-pop,maf-5-all-pops 616 chr1 4109682 4109683 rs75576051 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 616 chr1 4109864 4109875 rs146025316 0 + GAGAGGGAGAA GAGAGGGAGAA -/GAGAGGGAGAA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GAGAGGGAGAA, 403.000000,4605.000000, 0.080471,0.919529, 616 chr1 4110204 4110205 rs78079222 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4614.000000,394.000000, 0.921326,0.078674, maf-5-some-pop 616 chr1 4110375 4110376 rs76368006 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4233.000000,775.000000, 0.845248,0.154752, maf-5-some-pop,maf-5-all-pops 616 chr1 4110394 4110395 rs140868777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 616 chr1 4110555 4110556 rs55645535 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4860.000000,148.000000, 0.970447,0.029553, 616 chr1 4110777 4110778 rs531156883 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4402.000000,606.000000, 0.878994,0.121006, 616 chr1 4111056 4111057 rs113176157 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 462.000000,4546.000000, 0.092252,0.907748, 616 chr1 4111082 4111083 rs74224231 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 462.000000,4546.000000, 0.092252,0.907748, maf-5-some-pop,maf-5-all-pops 616 chr1 4111186 4111187 rs12749761 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 A,G, 813.000000,4195.000000, 0.162340,0.837660, maf-5-some-pop 616 chr1 4111543 4111544 rs59796822 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,G, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop,maf-5-all-pops 616 chr1 4111740 4111741 rs4553153 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP, 2 C,T, 3604.000000,1404.000000, 0.719649,0.280351, maf-5-some-pop,maf-5-all-pops 616 chr1 4112065 4112066 rs113076455 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, 616 chr1 4112116 4112117 rs75068257 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4552.000000,456.000000, 0.908946,0.091054, 616 chr1 4112464 4112465 rs12077395 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,PJP,SC_SNP,TISHKOFF, 2 A,G, 455.000000,4553.000000, 0.090855,0.909145, 616 chr1 4112513 4112514 rs111554170 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 616 chr1 4112624 4112625 rs4654473 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2013.000000,2995.000000, 0.401957,0.598043, 616 chr1 4112749 4112750 rs74827518 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4553.000000,455.000000, 0.909145,0.090855, maf-5-some-pop,maf-5-all-pops 616 chr1 4113095 4113096 rs4266850 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 616 chr1 4113370 4113371 rs4077886 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop,maf-5-all-pops 616 chr1 4113819 4113820 rs112463927 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 128.000000,4880.000000, 0.025559,0.974441, maf-5-some-pop,maf-5-all-pops 616 chr1 4113917 4113918 rs12040593 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4616.000000,392.000000, 0.921725,0.078275, maf-5-some-pop,maf-5-all-pops 616 chr1 4113943 4113944 rs78871104 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 616 chr1 4114129 4114130 rs5772137 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 1809.000000,3199.000000, 0.361222,0.638778, 616 chr1 4114554 4114555 rs112404600 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 202.000000,4806.000000, 0.040335,0.959665, 616 chr1 4114595 4114596 rs4585953 0 - G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_JCM,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 616 chr1 4114900 4114901 rs35953644 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 616 chr1 4114940 4114941 rs79415785 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 616 chr1 4115221 4115222 rs115703082 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 66.000000,4942.000000, 0.013179,0.986821, 616 chr1 4115575 4115576 rs10799171 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4541.000000,467.000000, 0.906749,0.093251, maf-5-some-pop 616 chr1 4115702 4115703 rs111327821 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4886.000000,122.000000, 0.975639,0.024361, 616 chr1 4115836 4115837 rs10915357 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 A,G, 349.000000,4659.000000, 0.069688,0.930312, maf-5-some-pop,maf-5-all-pops 616 chr1 4115927 4115928 rs6426377 0 + G G C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 616 chr1 4115928 4115929 rs116440116 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 616 chr1 4116034 4116035 rs72853640 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,T, 4885.000000,123.000000, 0.975439,0.024561, 616 chr1 4116293 4116294 rs111557042 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop,maf-5-all-pops 616 chr1 4116603 4116604 rs3856168 0 + T T C/T genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 616 chr1 4117142 4117143 rs4654403 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4583.000000,425.000000, 0.915136,0.084864, maf-5-some-pop 616 chr1 4117220 4117221 rs35907445 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 121.000000,4887.000000, 0.024161,0.975839, 616 chr1 4117228 4117229 rs7541137 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop 616 chr1 4117237 4117238 rs4654404 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3172.000000,1836.000000, 0.633387,0.366613, maf-5-some-pop,maf-5-all-pops 616 chr1 4117313 4117314 rs72853647 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, 616 chr1 4117553 4117554 rs10915360 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 609.000000,4399.000000, 0.121605,0.878395, maf-5-some-pop 616 chr1 4117594 4117595 rs78054750 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 616 chr1 4117746 4117747 rs114934001 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 616 chr1 4117763 4117764 rs72853648 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, 616 chr1 4117911 4117912 rs75334036 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, 616 chr1 4118047 4118047 rs572897020 0 + - - -/AGCCAGCTGTTGCAGC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AGCCAGCTGTTGCAGC, 4885.000000,123.000000, 0.975439,0.024561, 616 chr1 4118144 4118145 rs72853653 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 124.000000,4884.000000, 0.024760,0.975240, 616 chr1 4118605 4118606 rs79132380 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 616 chr1 4118776 4118777 rs75175332 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop,maf-5-all-pops 616 chr1 4118808 4118809 rs146024016 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 616 chr1 4118843 4118844 rs74801420 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,JMKIDD_LAB,SSMP, 2 C,T, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop 616 chr1 4118861 4118862 rs74880957 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 85.000000,4923.000000, 0.016973,0.983027, 616 chr1 4118899 4118900 rs7419106 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1152.000000,3856.000000, 0.230032,0.769968, maf-5-some-pop 616 chr1 4119421 4119422 rs10915366 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop 616 chr1 4119577 4119578 rs12745618 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1860.000000,3148.000000, 0.371406,0.628594, maf-5-some-pop,maf-5-all-pops 616 chr1 4119622 4119623 rs10799177 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4340.000000,668.000000, 0.866613,0.133387, maf-5-some-pop 616 chr1 4119661 4119662 rs9792946 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4343.000000,665.000000, 0.867212,0.132788, maf-5-some-pop 616 chr1 4119729 4119730 rs7418034 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4346.000000,662.000000, 0.867812,0.132188, 616 chr1 4119732 4119733 rs7412152 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 663.000000,4345.000000, 0.132388,0.867612, 616 chr1 4119753 4119754 rs7411249 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 662.000000,4346.000000, 0.132188,0.867812, 616 chr1 4119966 4119967 rs537366925 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 58.000000,4950.000000, 0.011582,0.988419, 616 chr1 4119971 4119972 rs557188480 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, 616 chr1 4119980 4119981 rs7412217 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 649.000000,4359.000000, 0.129593,0.870407, 616 chr1 4119997 4119998 rs536398609 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 58.000000,4950.000000, 0.011582,0.988419, 616 chr1 4119999 4120000 rs552888679 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 616 chr1 4120002 4120003 rs4310408 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 839.000000,4169.000000, 0.167532,0.832468, 616 chr1 4120098 4120099 rs147963499 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,C, 4882.000000,126.000000, 0.974840,0.025160, 616 chr1 4120126 4120127 rs10737398 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 2547.000000,2461.000000, 0.508586,0.491414, 616 chr1 4120165 4120166 rs58386591 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,LUNTER, 2 -,A, 305.000000,4703.000000, 0.060903,0.939097, 616 chr1 4120172 4120173 rs6426378 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,PERLEGEN,SC_JCM,WI_SSAHASNP, 2 A,C, 3382.000000,1626.000000, 0.675319,0.324681, maf-5-some-pop,maf-5-all-pops 616 chr1 4120204 4120205 rs6426379 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PERLEGEN,SC_JCM,TISHKOFF,WI_SSAHASNP, 2 C,G, 4383.000000,625.000000, 0.875200,0.124800, maf-5-some-pop 616 chr1 4120208 4120209 rs4584362 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BUSHMAN,HGSV,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop,maf-5-all-pops 616 chr1 4120256 4120257 rs77591594 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 616 chr1 4120310 4120311 rs7514530 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3268.000000,1740.000000, 0.652556,0.347444, maf-5-some-pop,maf-5-all-pops,microattr-tpa 616 chr1 4120343 4120344 rs12080221 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,SC_SNP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 616 chr1 4120498 4120499 rs4233255 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4243.000000,765.000000, 0.847244,0.152756, maf-5-some-pop,maf-5-all-pops 616 chr1 4120541 4120542 rs4589077 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3397.000000,1611.000000, 0.678315,0.321685, maf-5-some-pop,maf-5-all-pops 616 chr1 4120555 4120556 rs4575054 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1609.000000,3399.000000, 0.321286,0.678714, maf-5-some-pop,maf-5-all-pops 616 chr1 4120568 4120569 rs5772138 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,LUNTER,SSMP,TISHKOFF, 2 -,A, 141.000000,4867.000000, 0.028155,0.971845, 616 chr1 4120590 4120591 rs4654476 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop 616 chr1 4120593 4120594 rs4654477 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4384.000000,624.000000, 0.875399,0.124601, maf-5-some-pop 616 chr1 4120795 4120796 rs4233256 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 792.000000,4216.000000, 0.158147,0.841853, maf-5-some-pop,maf-5-all-pops 616 chr1 4120897 4120898 rs4233258 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 616 chr1 4120986 4120987 rs10915372 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3403.000000,1605.000000, 0.679513,0.320487, maf-5-some-pop,maf-5-all-pops 616 chr1 4121104 4121105 rs10915373 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2518.000000,2490.000000, 0.502796,0.497204, maf-5-some-pop,maf-5-all-pops 616 chr1 4121290 4121291 rs7553858 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 1599.000000,3409.000000, 0.319289,0.680711, maf-5-some-pop,maf-5-all-pops 616 chr1 4121348 4121349 rs12087801 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 2517.000000,2491.000000, 0.502596,0.497404, maf-5-some-pop,maf-5-all-pops 616 chr1 4121383 4121384 rs7524590 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 918.000000,4090.000000, 0.183307,0.816693, maf-5-some-pop,maf-5-all-pops 616 chr1 4121493 4121494 rs7556284 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1600.000000,3408.000000, 0.319489,0.680511, maf-5-some-pop,maf-5-all-pops 616 chr1 4121583 4121584 rs7524800 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3466.000000,1542.000000, 0.692093,0.307907, maf-5-some-pop,maf-5-all-pops,microattr-tpa 616 chr1 4121606 4121607 rs6426381 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4257.000000,751.000000, 0.850040,0.149960, maf-5-some-pop 616 chr1 4121609 4121610 rs6665286 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2961.000000,2047.000000, 0.591254,0.408746, maf-5-some-pop,maf-5-all-pops 616 chr1 4121626 4121627 rs116485672 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4749.000000,259.000000, 0.948283,0.051717, maf-5-some-pop,maf-5-all-pops 616 chr1 4121652 4121653 rs7556385 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1542.000000,3466.000000, 0.307907,0.692093, maf-5-some-pop,maf-5-all-pops 616 chr1 4121695 4121696 rs7520322 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1601.000000,3407.000000, 0.319688,0.680312, maf-5-some-pop,maf-5-all-pops 616 chr1 4121715 4121716 rs10799179 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2518.000000,2490.000000, 0.502796,0.497204, maf-5-some-pop,maf-5-all-pops 616 chr1 4121746 4121747 rs12041796 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP, 2 A,C, 146.000000,4862.000000, 0.029153,0.970847, maf-5-some-pop 616 chr1 4121811 4121812 rs7520448 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3408.000000,1600.000000, 0.680511,0.319489, maf-5-some-pop,maf-5-all-pops 616 chr1 4121934 4121935 rs11809224 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop 616 chr1 4122498 4122499 rs75092082 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 59.000000,4949.000000, 0.011781,0.988219, 616 chr1 4123098 4123099 rs6669278 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 3786.000000,1222.000000, 0.755990,0.244010, maf-5-some-pop,maf-5-all-pops 616 chr1 4123203 4123204 rs12044274 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2104.000000,2904.000000, 0.420128,0.579872, maf-5-some-pop,maf-5-all-pops 616 chr1 4123446 4123447 rs150061195 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 616 chr1 4123485 4123486 rs12728781 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2987.000000,2021.000000, 0.596446,0.403554, maf-5-some-pop,maf-5-all-pops 616 chr1 4123525 4123526 rs145375670 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 616 chr1 4123848 4123849 rs10915381 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2121.000000,2887.000000, 0.423522,0.576478, maf-5-some-pop,maf-5-all-pops 616 chr1 4124154 4124155 rs6672626 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2895.000000,2113.000000, 0.578075,0.421925, maf-5-some-pop,maf-5-all-pops 616 chr1 4124216 4124217 rs114850430 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 616 chr1 4124259 4124260 rs6672716 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,SSAHASNP,SSMP, 2 C,T, 2972.000000,2036.000000, 0.593450,0.406550, maf-5-some-pop,maf-5-all-pops 616 chr1 4124273 4124277 rs71580242 0 + CAGT CAGT -/CAGT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BILGI_BIOE,HUMANGENOME_JCVI,LUNTER,SSMP, 2 -,CAGT, 2041.000000,2967.000000, 0.407548,0.592452, 616 chr1 4124308 4124310 rs71580243 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,BILGI_BIOE,BL,GMI,HUMANGENOME_JCVI,LUNTER,SSMP, 2 -,CA, 1548.000000,3460.000000, 0.309105,0.690895, 616 chr1 4124336 4124340 rs112128329 0 + CTCA CTCA -/CTCA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BUSHMAN,SSMP, 2 -,CTCA, 378.000000,4630.000000, 0.075479,0.924521, 616 chr1 4124355 4124359 rs200424584 0 + TCAT TCAT -/TCAT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,EVA-GONL, 2 -,TCAT, 97.000000,4911.000000, 0.019369,0.980631, 616 chr1 4124401 4124405 rs367758391 0 + TCAC TCAC -/TCAC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 -,TCAC, 313.000000,4695.000000, 0.062500,0.937500, 616 chr1 4124436 4124437 rs6665849 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1233.000000,3775.000000, 0.246206,0.753794, 616 chr1 4124445 4124449 rs566667743 0 + TCAC TCAC -/TCAC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TCAC, 171.000000,4837.000000, 0.034145,0.965855, 616 chr1 4124502 4124504 rs200141355 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CA, 85.000000,4923.000000, 0.016973,0.983027, 616 chr1 4124547 4124548 rs564909618 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 62.000000,4946.000000, 0.012380,0.987620, 616 chr1 4124548 4124548 rs145879791 0 + - - -/CA genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,GMI, 2 -,CA, 2789.000000,2219.000000, 0.556909,0.443091, 616 chr1 4124602 4124603 rs372500379 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,G, 131.000000,4877.000000, 0.026158,0.973842, 616 chr1 4124606 4124607 rs374448122 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 616 chr1 4124610 4124612 rs572606593 0 + TT TT -/TT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TT, 105.000000,4903.000000, 0.020967,0.979034, 616 chr1 4124612 4124612 rs542784671 0 + - - -/CA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CA, 4665.000000,343.000000, 0.931510,0.068490, 616 chr1 4124632 4124632 rs561062240 0 + - - -/CA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CA, 4587.000000,421.000000, 0.915935,0.084065, 616 chr1 4124651 4124652 rs368647535 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 A,T, 4389.000000,619.000000, 0.876398,0.123602, 616 chr1 4124653 4124654 rs557933008 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 391.000000,4617.000000, 0.078075,0.921925, 616 chr1 4124657 4124658 rs537097373 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 278.000000,4730.000000, 0.055511,0.944489, 616 chr1 4124670 4124671 rs536926215 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4821.000000,187.000000, 0.962660,0.037340, 616 chr1 4124730 4124731 rs575068313 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 616 chr1 4124795 4124796 rs573442237 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 115.000000,4893.000000, 0.022963,0.977037, 616 chr1 4124828 4124830 rs567395918 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CT, 102.000000,4906.000000, 0.020367,0.979633, 616 chr1 4124844 4124846 rs149540899 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,CA, 234.000000,4774.000000, 0.046725,0.953275, 616 chr1 4124905 4124909 rs201602146 0 + CTCA CTCA -/CTCA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CTCA, 138.000000,4870.000000, 0.027556,0.972444, 616 chr1 4124970 4124970 rs542550602 0 + - - -/TCAC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,TCAC, 4525.000000,483.000000, 0.903554,0.096446, 616 chr1 4125006 4125007 rs200061316 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,T, 4878.000000,130.000000, 0.974042,0.025959, 616 chr1 4125007 4125007 rs540733151 0 + - - -/CT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,CT, 4479.000000,529.000000, 0.894369,0.105631, 616 chr1 4125019 4125020 rs114138606 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, 616 chr1 4125021 4125022 rs117522490 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,maf-5-all-pops 616 chr1 4125063 4125067 rs202067351 0 + CTCA CTCA -/CTCA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,TISHKOFF, 2 -,CTCA, 123.000000,4885.000000, 0.024561,0.975439, 616 chr1 4125123 4125127 rs373677993 0 + CACT CACT -/CACT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSIP,SSMP, 2 -,CACT, 77.000000,4931.000000, 0.015375,0.984625, 616 chr1 4125165 4125166 rs111161819 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, 616 chr1 4125175 4125176 rs111161820 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP, 2 C,T, 4493.000000,515.000000, 0.897165,0.102835, 616 chr1 4125205 4125207 rs148811149 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,PJP, 2 -,CA, 2758.000000,2250.000000, 0.550719,0.449281, 616 chr1 4125225 4125227 rs547063561 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CT, 89.000000,4919.000000, 0.017772,0.982228, 616 chr1 4125227 4125228 rs61720809 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,GMI,HGSV,ILLUMINA-UK, 2 C,T, 2715.000000,2293.000000, 0.542133,0.457867, 616 chr1 4125228 4125229 rs575278139 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 516.000000,4492.000000, 0.103035,0.896965, 616 chr1 4125232 4125233 rs544273616 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4894.000000,114.000000, 0.977236,0.022764, 616 chr1 4125300 4125304 rs536545982 0 + TCAC TCAC -/TCAC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TCAC, 59.000000,4949.000000, 0.011781,0.988219, 616 chr1 4125370 4125372 rs576231682 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CT, 76.000000,4932.000000, 0.015176,0.984824, 616 chr1 4125371 4125372 rs540141567 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 361.000000,4647.000000, 0.072085,0.927915, 616 chr1 4125372 4125372 rs148040273 0 + - - -/CA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,GMI,LUNTER,WARNICH_LAB, 2 -,CA, 2009.000000,2999.000000, 0.401158,0.598842, 616 chr1 4125393 4125393 rs375783227 0 + - - -/TCAC genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,SSIP, 2 -,TCAC, 2004.000000,3004.000000, 0.400160,0.599840, 616 chr1 4125402 4125403 rs111203560 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,GMI,SSMP, 2 C,T, 708.000000,4300.000000, 0.141374,0.858626, 616 chr1 4125462 4125466 rs140479185 0 + CACT CACT -/CACT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,CACT, 2362.000000,2646.000000, 0.471645,0.528355, 616 chr1 4125591 4125592 rs200792166 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 -,A, 582.000000,4426.000000, 0.116214,0.883786, 616 chr1 4125612 4125612 rs148561795 0 + - - -/ATTT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,ATTT, 4543.000000,465.000000, 0.907149,0.092851, 616 chr1 4125615 4125616 rs200371302 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 4796.000000,212.000000, 0.957668,0.042332, 616 chr1 4125633 4125633 rs199555857 0 + - - -/CA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CA, 4554.000000,454.000000, 0.909345,0.090655, 616 chr1 4125658 4125659 rs116661004 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop,maf-5-all-pops 616 chr1 4125682 4125682 rs201284250 0 + - - -/TCAC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TCAC, 4481.000000,527.000000, 0.894768,0.105232, 616 chr1 4125683 4125683 rs143629327 0 + - - -/CA genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,GMI,SSMP, 2 -,CA, 1997.000000,3011.000000, 0.398762,0.601238, 616 chr1 4125726 4125726 rs535797487 0 + - - -/TCAC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TCAC, 4725.000000,283.000000, 0.943490,0.056510, 616 chr1 4125729 4125729 rs140587069 0 + - - -/CT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CT, 4717.000000,291.000000, 0.941893,0.058107, 616 chr1 4125749 4125751 rs147423878 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,CA, 374.000000,4634.000000, 0.074680,0.925319, 616 chr1 4125858 4125860 rs146923056 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,AT, 245.000000,4763.000000, 0.048922,0.951078, 616 chr1 4125958 4125959 rs10915387 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,PJP,SC_SNP, 2 C,T, 713.000000,4295.000000, 0.142372,0.857628, 616 chr1 4125996 4125997 rs562559253 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, 616 chr1 4126040 4126041 rs111161821 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, 616 chr1 4126045 4126049 rs201090318 0 + TCAT TCAT -/TCAT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TCAT, 57.000000,4951.000000, 0.011382,0.988618, 616 chr1 4126052 4126053 rs566836674 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 616 chr1 4126084 4126088 rs374454282 0 + CACT CACT -/CACT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,CACT, 59.000000,4949.000000, 0.011781,0.988219, 616 chr1 4126160 4126161 rs111161822 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4588.000000,420.000000, 0.916134,0.083866, 616 chr1 4126231 4126235 rs138795280 0 + CAGT CAGT -/CAGT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,GMI,PJP,WARNICH_LAB, 2 -,CAGT, 3273.000000,1735.000000, 0.653554,0.346446, 616 chr1 4126292 4126292 rs146735243 0 + - - -/ACAT/AT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,GMI, 3 -,ACAT,AT, 4464.000000,68.000000,476.000000, 0.891374,0.013578,0.095048, 616 chr1 4126400 4126401 rs28970404 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSAHASNP, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, 616 chr1 4126425 4126425 rs543343933 0 + - - -/CT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CT, 4481.000000,527.000000, 0.894768,0.105232, 616 chr1 4126436 4126440 rs200725626 0 + TCAG TCAG -/TCAG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TCAG, 373.000000,4635.000000, 0.074481,0.925519, 616 chr1 4126462 4126466 rs559054252 0 + TCAG TCAG -/TCAG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TCAG, 143.000000,4865.000000, 0.028554,0.971446, 616 chr1 4126465 4126466 rs542084937 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4574.000000,434.000000, 0.913339,0.086661, 616 chr1 4126469 4126475 rs529718644 0 + CTCATT CTCATT -/CTCATT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CTCATT, 345.000000,4663.000000, 0.068890,0.931110, 616 chr1 4126480 4126481 rs530243703 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4572.000000,436.000000, 0.912939,0.087061, 616 chr1 4126491 4126492 rs28972760 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSAHASNP, 2 A,C, 378.000000,4630.000000, 0.075479,0.924521, maf-5-some-pop 616 chr1 4126502 4126506 rs541470049 0 + TCAT TCAT -/TCAT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TCAT, 53.000000,4955.000000, 0.010583,0.989417, 616 chr1 4126527 4126528 rs560301221 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 616 chr1 4126531 4126532 rs532496016 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 86.000000,4922.000000, 0.017173,0.982827, 616 chr1 4126536 4126538 rs562935194 0 + TC TC -/TC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TC, 84.000000,4924.000000, 0.016773,0.983227, 616 chr1 4126542 4126544 rs530483023 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AT, 68.000000,4940.000000, 0.013578,0.986422, 616 chr1 4126544 4126544 rs552599112 0 + - - -/ACTC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,ACTC, 4548.000000,460.000000, 0.908147,0.091853, 616 chr1 4126619 4126619 rs139003622 0 + - - -/CT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,BL, 2 -,CT, 4359.000000,649.000000, 0.870407,0.129593, 616 chr1 4126622 4126623 rs56651270 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,BUSHMAN,GMI,HGSV,ILLUMINA-UK, 2 A,G, 3703.000000,1305.000000, 0.739417,0.260583, 616 chr1 4126629 4126633 rs142346758 0 + CACT CACT -/CACT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CACT, 353.000000,4655.000000, 0.070487,0.929513, 616 chr1 4126645 4126647 rs201979887 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CA, 193.000000,4815.000000, 0.038538,0.961462, 616 chr1 4126706 4126708 rs200212278 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,TISHKOFF, 2 -,CA, 195.000000,4813.000000, 0.038938,0.961062, 616 chr1 4126775 4126776 rs28970296 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSAHASNP, 2 A,T, 396.000000,4612.000000, 0.079074,0.920927, 616 chr1 4126778 4126778 rs539791535 0 + - - -/CA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CA, 4844.000000,164.000000, 0.967252,0.032748, 616 chr1 4126818 4126820 rs540896916 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CT, 219.000000,4789.000000, 0.043730,0.956270, 616 chr1 4126823 4126845 rs552746399 0 + TCACTCACACACTCACACTCAT TCACTCACACACTCACACTCAT -/TCACTCACACACTCACACTCAT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TCACTCACACACTCACACTCAT, 73.000000,4935.000000, 0.014577,0.985423, 616 chr1 4126831 4126832 rs540378884 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4910.000000,98.000000, 0.980431,0.019569, 616 chr1 4126844 4126845 rs562521896 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 93.000000,4915.000000, 0.018570,0.981430, 616 chr1 4126853 4126857 rs142731833 0 + TCAG TCAG -/TCAG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TCAG, 157.000000,4851.000000, 0.031350,0.968650, 616 chr1 4126887 4126889 rs575154489 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CA, 78.000000,4930.000000, 0.015575,0.984425, 616 chr1 4126906 4126910 rs377632569 0 + TCAC TCAC -/TCAC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSIP,SSMP, 2 -,TCAC, 375.000000,4633.000000, 0.074880,0.925120, 616 chr1 4126988 4126988 rs564661601 0 + - - -/ACTT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,ACTT, 4860.000000,148.000000, 0.970447,0.029553, 616 chr1 4126991 4126992 rs28972126 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,GMI,SSAHASNP,TISHKOFF, 2 C,T, 4036.000000,972.000000, 0.805911,0.194089, 616 chr1 4126992 4126992 rs146983632 0 + - - -/ACTT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,ACTT, 4241.000000,767.000000, 0.846845,0.153155, 616 chr1 4126997 4126998 rs62653720 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,BUSHMAN,GMI,ILLUMINA-UK, 2 C,T, 3175.000000,1833.000000, 0.633986,0.366014, 616 chr1 4127001 4127002 rs28973096 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,BUSHMAN,GMI,SSAHASNP,TISHKOFF, 2 C,T, 1885.000000,3123.000000, 0.376398,0.623602, 616 chr1 4127165 4127169 rs202032819 0 + CATT CATT -/CATT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CATT, 199.000000,4809.000000, 0.039736,0.960264, 616 chr1 4127217 4127219 rs539480716 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CA, 52.000000,4956.000000, 0.010383,0.989617, 616 chr1 4127228 4127230 rs200096723 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AT, 106.000000,4902.000000, 0.021166,0.978834, 616 chr1 4127239 4127240 rs111074032 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 432.000000,4576.000000, 0.086262,0.913738, 616 chr1 4127240 4127240 rs147619543 0 + - - -/TCAC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,GMI, 2 -,TCAC, 3336.000000,1672.000000, 0.666134,0.333866, 616 chr1 4127249 4127249 rs534595642 0 + - - -/CA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CA, 4953.000000,55.000000, 0.989018,0.010982, 616 chr1 4127263 4127265 rs201250029 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CA, 90.000000,4918.000000, 0.017971,0.982029, 616 chr1 4127289 4127290 rs201573726 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 616 chr1 4127292 4127293 rs200503276 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,T, 4861.000000,147.000000, 0.970647,0.029353, 616 chr1 4127293 4127293 rs151132684 0 + - - -/CACT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CACT, 4489.000000,519.000000, 0.896366,0.103634, 616 chr1 4127471 4127472 rs78515728 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,G, 4775.000000,233.000000, 0.953474,0.046526, 616 chr1 4127477 4127478 rs80294029 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 233.000000,4775.000000, 0.046526,0.953474, 616 chr1 4127511 4127515 rs139287921 0 + CACT CACT -/CACT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CACT, 227.000000,4781.000000, 0.045327,0.954673, 616 chr1 4127521 4127522 rs4654478 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,SSMP,WI_SSAHASNP, 2 C,T, 163.000000,4845.000000, 0.032548,0.967452, 616 chr1 4127546 4127547 rs572723311 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4941.000000,67.000000, 0.986621,0.013379, 616 chr1 4127550 4127551 rs541332147 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4949.000000,59.000000, 0.988219,0.011781, 616 chr1 4127634 4127635 rs6672447 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,GMI,ILLUMINA-UK,PJP,SSAHASNP,SSMP, 2 A,G, 2326.000000,2682.000000, 0.464457,0.535543, 616 chr1 4127747 4127748 rs35843992 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,COMPLETE_GENOMICS,HGSV,ILLUMINA,TISHKOFF, 2 C,T, 154.000000,4854.000000, 0.030751,0.969249, 616 chr1 4127799 4127800 rs4654407 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2027.000000,2981.000000, 0.404752,0.595248, maf-5-some-pop,maf-5-all-pops 616 chr1 4127860 4127861 rs4654408 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3916.000000,1092.000000, 0.781949,0.218051, maf-5-some-pop 616 chr1 4128046 4128047 rs4654409 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2050.000000,2958.000000, 0.409345,0.590655, maf-5-some-pop,maf-5-all-pops 616 chr1 4128153 4128154 rs10915398 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2050.000000,2958.000000, 0.409345,0.590655, maf-5-some-pop,maf-5-all-pops 616 chr1 4128369 4128370 rs10753357 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 2430.000000,2578.000000, 0.485224,0.514776, maf-5-some-pop,maf-5-all-pops 616 chr1 4128694 4128695 rs10915400 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2967.000000,2041.000000, 0.592452,0.407548, maf-5-some-pop,maf-5-all-pops 616 chr1 4128766 4128767 rs11586513 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2050.000000,2958.000000, 0.409345,0.590655, maf-5-some-pop,maf-5-all-pops 616 chr1 4128873 4128874 rs75311026 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 616 chr1 4128876 4128877 rs58745595 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 G,T, 78.000000,4930.000000, 0.015575,0.984425, 616 chr1 4129073 4129074 rs5017451 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 150.000000,4858.000000, 0.029952,0.970048, 616 chr1 4129246 4129247 rs17404781 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 2050.000000,2958.000000, 0.409345,0.590655, maf-5-some-pop,maf-5-all-pops 616 chr1 4129265 4129266 rs16840701 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4177.000000,831.000000, 0.834065,0.165935, maf-5-some-pop 616 chr1 4129632 4129633 rs7415439 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 528.000000,4480.000000, 0.105431,0.894569, maf-5-some-pop 616 chr1 4129717 4129718 rs58720249 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,HGSV,ILLUMINA, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 616 chr1 4129933 4129934 rs4603097 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2389.000000,2619.000000, 0.477037,0.522963, maf-5-some-pop,maf-5-all-pops 616 chr1 4130045 4130045 rs200828875 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,C, 4925.000000,83.000000, 0.983427,0.016573, 616 chr1 4130230 4130231 rs72853686 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 339.000000,4669.000000, 0.067692,0.932308, maf-5-some-pop 616 chr1 4130347 4130348 rs4130940 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,maf-5-all-pops 616 chr1 4130568 4130569 rs4130941 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2579.000000,2429.000000, 0.514976,0.485024, maf-5-some-pop,maf-5-all-pops 616 chr1 4130601 4130602 rs4584363 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SC_JCM,SSMP, 2 A,T, 4492.000000,516.000000, 0.896965,0.103035, maf-5-some-pop 616 chr1 4130611 4130612 rs4511083 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,SC_JCM,TISHKOFF, 2 A,T, 4936.000000,72.000000, 0.985623,0.014377, 616 chr1 4131003 4131004 rs4382692 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,SC_JCM,TISHKOFF, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, 616 chr1 4131013 4131014 rs4262509 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2051.000000,2957.000000, 0.409545,0.590455, maf-5-some-pop,maf-5-all-pops 616 chr1 4131180 4131181 rs4400586 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,maf-5-all-pops 616 chr1 4131222 4131223 rs78354175 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 616 chr1 4131248 4131249 rs7537141 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,maf-5-all-pops 616 chr1 4131309 4131310 rs7537236 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,maf-5-all-pops 616 chr1 4131315 4131316 rs7537237 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2426.000000,2582.000000, 0.484425,0.515575, maf-5-some-pop,maf-5-all-pops 616 chr1 4131359 4131360 rs7532788 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2958.000000,2050.000000, 0.590655,0.409345, maf-5-some-pop,maf-5-all-pops 616 chr1 4131680 4131681 rs4381154 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,KRIBB_YJKIM,SC_JCM,TISHKOFF, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 616 chr1 4131916 4131916 rs71274584 0 + - - -/CTGCTC genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,LUNTER, 2 -,CTGCTC, 2435.000000,2573.000000, 0.486222,0.513778, 616 chr1 4132017 4132018 rs9628649 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2433.000000,2575.000000, 0.485823,0.514177, maf-5-some-pop,maf-5-all-pops 616 chr1 4132221 4132222 rs12093951 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4479.000000,529.000000, 0.894369,0.105631, maf-5-some-pop 616 chr1 4132439 4132440 rs12097034 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4480.000000,528.000000, 0.894569,0.105431, maf-5-some-pop 616 chr1 4132518 4132519 rs75270546 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 616 chr1 4132572 4132573 rs7529548 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,G, 2032.000000,2976.000000, 0.405751,0.594249, maf-5-some-pop,maf-5-all-pops 616 chr1 4132675 4132676 rs72853695 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop,maf-5-all-pops 616 chr1 4132954 4132955 rs10157040 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 2409.000000,2599.000000, 0.481030,0.518970, maf-5-some-pop,maf-5-all-pops 616 chr1 4133024 4133025 rs75207437 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop,maf-5-all-pops 616 chr1 4133034 4133035 rs10159347 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 2594.000000,2414.000000, 0.517971,0.482029, maf-5-some-pop,maf-5-all-pops 616 chr1 4133091 4133092 rs35924168 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 225.000000,4783.000000, 0.044928,0.955072, maf-5-some-pop,maf-5-all-pops 616 chr1 4133095 4133096 rs10157057 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 2408.000000,2600.000000, 0.480831,0.519169, maf-5-some-pop,maf-5-all-pops 616 chr1 4133113 4133114 rs72847077 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 616 chr1 4133189 4133190 rs12049038 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3308.000000,1700.000000, 0.660543,0.339457, maf-5-some-pop,maf-5-all-pops 616 chr1 4133219 4133220 rs114341502 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 616 chr1 4133240 4133241 rs12021796 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1706.000000,3302.000000, 0.340655,0.659345, maf-5-some-pop,maf-5-all-pops 616 chr1 4133241 4133242 rs78227912 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,C, 83.000000,4925.000000, 0.016573,0.983427, 616 chr1 4133321 4133322 rs75143687 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 616 chr1 4133391 4133392 rs77645855 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,SSMP, 2 G,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 616 chr1 4133517 4133518 rs199739614 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,G, 54.000000,4954.000000, 0.010783,0.989217, 616 chr1 4133873 4133874 rs143070749 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, 616 chr1 4133899 4133900 rs148200782 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 616 chr1 4133900 4133901 rs11589171 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1540.000000,3468.000000, 0.307508,0.692492, 616 chr1 4134253 4134254 rs79674679 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 616 chr1 4134714 4134715 rs6426384 0 + T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1450.000000,3558.000000, 0.289537,0.710463, maf-5-some-pop,maf-5-all-pops 616 chr1 4135230 4135231 rs115644260 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 616 chr1 4135280 4135281 rs72847084 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 G,T, 55.000000,4953.000000, 0.010982,0.989018, 616 chr1 4135652 4135653 rs9919133 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4836.000000,172.000000, 0.965655,0.034345, 616 chr1 4136064 4136065 rs6686087 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2124.000000,2884.000000, 0.424121,0.575879, maf-5-some-pop,maf-5-all-pops 616 chr1 4136164 4136165 rs11577814 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 864.000000,4144.000000, 0.172524,0.827476, maf-5-some-pop,maf-5-all-pops 616 chr1 4136212 4136213 rs74643023 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,EVA-GONL,GMI,SSMP, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 616 chr1 4136311 4136312 rs114299090 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 616 chr1 4136349 4136350 rs7553013 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2692.000000,2316.000000, 0.537540,0.462460, maf-5-some-pop,maf-5-all-pops 616 chr1 4136685 4136686 rs575717617 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 616 chr1 4136968 4136969 rs11589436 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4146.000000,862.000000, 0.827875,0.172125, maf-5-some-pop,maf-5-all-pops 616 chr1 4137041 4137042 rs10915417 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 616 chr1 4137217 4137218 rs6671404 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 1101.000000,3907.000000, 0.219848,0.780152, maf-5-some-pop,maf-5-all-pops 616 chr1 4137439 4137440 rs12731949 0 + G G A/G genomic single by-cluster,by-frequency 0.493827 0.055212 unknown exact 1 3 ENSEMBL,SSAHASNP,SSMP, 2 A,G, 10.000000,8.000000, 0.555556,0.444444, 616 chr1 4137488 4137489 rs55974954 0 + C C C/T genomic single by-frequency 0.42 0.183303 unknown exact 1 2 ENSEMBL,HGSV, 2 C,T, 3.000000,7.000000, 0.300000,0.700000, 616 chr1 4137894 4137895 rs369228040 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 C,T, 1467.000000,3541.000000, 0.292931,0.707069, 616 chr1 4138092 4138093 rs369478135 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 2463.000000,2545.000000, 0.491813,0.508187, 616 chr1 4138408 4138409 rs371722938 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,C, 4719.000000,289.000000, 0.942292,0.057708, 616 chr1 4138518 4138519 rs373408630 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 217.000000,4791.000000, 0.043331,0.956669, 616 chr1 4138701 4138702 rs576656317 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4895.000000,113.000000, 0.977436,0.022564, 616 chr1 4139059 4139060 rs12240075 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1122.000000,3886.000000, 0.224042,0.775958, maf-5-some-pop 616 chr1 4139237 4139238 rs4073835 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4048.000000,960.000000, 0.808307,0.191693, maf-5-some-pop,maf-5-all-pops 616 chr1 4139260 4139261 rs4073836 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4748.000000,260.000000, 0.948083,0.051917, 616 chr1 4139416 4139417 rs559218336 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 616 chr1 4139433 4139434 rs551145464 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4935.000000,73.000000, 0.985423,0.014577, 616 chr1 4139529 4139530 rs118108375 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, 616 chr1 4139930 4139931 rs4639725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1033.000000,3975.000000, 0.206270,0.793730, maf-5-some-pop,maf-5-all-pops 616 chr1 4140281 4140282 rs78478923 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 616 chr1 4140333 4140334 rs7535737 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,G, 145.000000,4863.000000, 0.028954,0.971046, 616 chr1 4140387 4140388 rs59476969 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 4878.000000,130.000000, 0.974042,0.025959, 616 chr1 4140860 4140861 rs10915420 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4374.000000,634.000000, 0.873403,0.126597, 616 chr1 4140875 4140876 rs6684922 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3297.000000,1711.000000, 0.658347,0.341653, 616 chr1 4141000 4141001 rs141422553 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 616 chr1 4141193 4141194 rs6685240 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3729.000000,1279.000000, 0.744609,0.255391, maf-5-some-pop,maf-5-all-pops 616 chr1 4141351 4141352 rs7418376 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 521.000000,4487.000000, 0.104034,0.895966, maf-5-some-pop 616 chr1 4141355 4141356 rs117800466 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 G,T, 112.000000,4896.000000, 0.022364,0.977636, 616 chr1 4141405 4141406 rs111605009 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4830.000000,178.000000, 0.964457,0.035543, 616 chr1 4141913 4141914 rs6657076 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 616 chr1 4142202 4142203 rs75838909 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop,maf-5-all-pops 616 chr1 4142284 4142285 rs573390776 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4950.000000,58.000000, 0.988419,0.011582, 616 chr1 4142392 4142393 rs77660451 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 616 chr1 4142634 4142635 rs72849803 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4425.000000,583.000000, 0.883586,0.116414, maf-5-some-pop,maf-5-all-pops 616 chr1 4142876 4142876 rs149931156 0 + - - -/CAATTAAT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,CAATTAAT, 4831.000000,177.000000, 0.964656,0.035344, 616 chr1 4142959 4142960 rs79167829 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 616 chr1 4143789 4143790 rs74328778 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 616 chr1 4143931 4143932 rs77857186 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 240.000000,4768.000000, 0.047923,0.952077, maf-5-some-pop 616 chr1 4145543 4145544 rs114522889 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4928.000000,80.000000, 0.984026,0.015974, 616 chr1 4145614 4145615 rs10915421 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 C,T, 1206.000000,3802.000000, 0.240815,0.759185, maf-5-some-pop,maf-5-all-pops,microattr-tpa 616 chr1 4145859 4145860 rs112535491 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 184.000000,4824.000000, 0.036741,0.963259, maf-5-some-pop,maf-5-all-pops 616 chr1 4145949 4145950 rs80202770 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 616 chr1 4146027 4146028 rs10915423 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 554.000000,4454.000000, 0.110623,0.889377, maf-5-some-pop 616 chr1 4146368 4146369 rs10915424 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1206.000000,3802.000000, 0.240815,0.759185, maf-5-some-pop,maf-5-all-pops,microattr-tpa 616 chr1 4146402 4146403 rs115193839 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 616 chr1 4146707 4146708 rs74049011 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 616 chr1 4146796 4146797 rs74049012 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 616 chr1 4147087 4147088 rs10915425 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3890.000000,1118.000000, 0.776757,0.223243, maf-5-some-pop,maf-5-all-pops 616 chr1 4147135 4147136 rs55774050 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,GMI,HGSV, 2 C,G, 749.000000,4259.000000, 0.149561,0.850439, 616 chr1 4147960 4147961 rs11578552 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4131.000000,877.000000, 0.824880,0.175120, maf-5-some-pop,maf-5-all-pops 616 chr1 4148022 4148023 rs11577344 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 722.000000,4286.000000, 0.144169,0.855831, maf-5-some-pop,maf-5-all-pops 616 chr1 4148112 4148113 rs12064039 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,SC_SNP, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop 616 chr1 4148257 4148258 rs6691052 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop,maf-5-all-pops 616 chr1 4148419 4148420 rs116582240 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 616 chr1 4148761 4148762 rs117707957 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,C, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 616 chr1 4148807 4148808 rs113594649 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 616 chr1 4148972 4148973 rs57658248 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 616 chr1 4149283 4149284 rs78051850 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 616 chr1 4149331 4149332 rs114925711 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 616 chr1 4149468 4149469 rs115649653 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 616 chr1 4149753 4149754 rs78318666 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 108.000000,4900.000000, 0.021566,0.978435, maf-5-some-pop,maf-5-all-pops 616 chr1 4150526 4150527 rs10753365 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3893.000000,1115.000000, 0.777356,0.222644, maf-5-some-pop,maf-5-all-pops 616 chr1 4151023 4151024 rs116460795 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 616 chr1 4151028 4151029 rs76862005 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 238.000000,4770.000000, 0.047524,0.952476, maf-5-some-pop,maf-5-all-pops 616 chr1 4151120 4151121 rs115530964 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop 616 chr1 4151135 4151136 rs57146568 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 577.000000,4431.000000, 0.115216,0.884784, maf-5-some-pop,maf-5-all-pops 616 chr1 4151148 4151149 rs79710051 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, maf-5-some-pop,maf-5-all-pops 616 chr1 4151348 4151349 rs4320754 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP, 2 C,T, 3781.000000,1227.000000, 0.754992,0.245008, maf-5-some-pop,maf-5-all-pops 616 chr1 4151543 4151544 rs74049015 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 616 chr1 4151750 4151751 rs4548406 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3940.000000,1068.000000, 0.786741,0.213259, maf-5-some-pop,maf-5-all-pops 616 chr1 4152138 4152139 rs12123119 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4597.000000,411.000000, 0.917931,0.082069, maf-5-some-pop 616 chr1 4152205 4152206 rs4654410 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1384.000000,3624.000000, 0.276358,0.723642, maf-5-some-pop,maf-5-all-pops 616 chr1 4152270 4152271 rs79905406 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4795.000000,213.000000, 0.957468,0.042532, 616 chr1 4152291 4152292 rs142668990 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4944.000000,64.000000, 0.987220,0.012780, 616 chr1 4152292 4152293 rs74049018 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 616 chr1 4152388 4152389 rs115644415 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop,maf-5-all-pops 616 chr1 4152551 4152552 rs145832047 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, 616 chr1 4152613 4152614 rs12028753 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, 616 chr1 4152714 4152715 rs4462110 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4223.000000,785.000000, 0.843251,0.156749, maf-5-some-pop,maf-5-all-pops 616 chr1 4152927 4152928 rs4481820 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1313.000000,3695.000000, 0.262181,0.737819, maf-5-some-pop,maf-5-all-pops 616 chr1 4153086 4153087 rs6676961 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 2464.000000,2544.000000, 0.492013,0.507987, maf-5-some-pop,maf-5-all-pops 616 chr1 4153190 4153191 rs538030946 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4932.000000,76.000000, 0.984824,0.015176, 616 chr1 4153206 4153207 rs12125719 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2850.000000,2158.000000, 0.569089,0.430911, maf-5-some-pop,maf-5-all-pops 616 chr1 4153229 4153230 rs12125725 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3273.000000,1735.000000, 0.653554,0.346446, maf-5-some-pop,maf-5-all-pops 616 chr1 4153258 4153259 rs117479807 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 227.000000,4781.000000, 0.045327,0.954673, maf-5-some-pop,maf-5-all-pops 616 chr1 4153261 4153262 rs12126649 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1019.000000,3989.000000, 0.203474,0.796526, maf-5-some-pop,maf-5-all-pops 616 chr1 4153683 4153684 rs55938404 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop,maf-5-all-pops 616 chr1 4153747 4153748 rs116196126 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 616 chr1 4154547 4154548 rs55639740 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 483.000000,4525.000000, 0.096446,0.903554, maf-5-some-pop,maf-5-all-pops 616 chr1 4154796 4154797 rs72629581 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 A,G, 4777.000000,231.000000, 0.953874,0.046126, maf-5-some-pop,maf-5-all-pops 616 chr1 4155156 4155156 rs560354410 0 + - - -/TTTTTTTTTTTTTTTTT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TTTTTTTTTTTTTTTTT, 720.000000,4288.000000, 0.143770,0.856230, 616 chr1 4155301 4155302 rs371057966 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4659.000000,349.000000, 0.930312,0.069688, 616 chr1 4155309 4155310 rs12033210 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP, 2 C,T, 4367.000000,641.000000, 0.872005,0.127995, 616 chr1 4155458 4155459 rs552298599 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 1954.000000,3054.000000, 0.390176,0.609824, 616 chr1 4155459 4155460 rs562619275 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 1954.000000,3054.000000, 0.390176,0.609824, 616 chr1 4155840 4155841 rs56329102 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3050.000000,1958.000000, 0.609026,0.390974, maf-5-some-pop,maf-5-all-pops 616 chr1 4156014 4156015 rs72629584 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop,maf-5-all-pops 616 chr1 4156177 4156178 rs10799198 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4408.000000,600.000000, 0.880192,0.119808, maf-5-some-pop,maf-5-all-pops 616 chr1 4156883 4156884 rs57501900 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 4750.000000,258.000000, 0.948482,0.051518, 616 chr1 4157170 4157171 rs114831233 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 76.000000,4932.000000, 0.015176,0.984824, 616 chr1 4157197 4157198 rs4600014 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 600.000000,4408.000000, 0.119808,0.880192, maf-5-some-pop 616 chr1 4157772 4157773 rs4361964 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2284.000000,2724.000000, 0.456070,0.543930, maf-5-some-pop,maf-5-all-pops 616 chr1 4157775 4157776 rs77619811 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 448.000000,4560.000000, 0.089457,0.910543, maf-5-some-pop,maf-5-all-pops 616 chr1 4157841 4157842 rs4351611 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1558.000000,3450.000000, 0.311102,0.688898, maf-5-some-pop,maf-5-all-pops 616 chr1 4158490 4158491 rs72629587 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF, 2 A,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop 616 chr1 4158539 4158540 rs72629589 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4767.000000,241.000000, 0.951877,0.048123, 616 chr1 4158552 4158553 rs117351314 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 616 chr1 4158733 4158734 rs12031803 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 616 chr1 4158954 4158955 rs10915428 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2676.000000,2332.000000, 0.534345,0.465655, maf-5-some-pop,maf-5-all-pops 616 chr1 4159365 4159366 rs151098294 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4643.000000,365.000000, 0.927117,0.072883, 616 chr1 4159378 4159379 rs10799199 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 597.000000,4411.000000, 0.119209,0.880791, 616 chr1 4159393 4159394 rs202021478 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,G, 393.000000,4615.000000, 0.078474,0.921526, 616 chr1 4159396 4159397 rs200298295 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,C, 4626.000000,382.000000, 0.923722,0.076278, 616 chr1 4159397 4159398 rs200981944 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 4616.000000,392.000000, 0.921725,0.078275, 616 chr1 4159416 4159417 rs112514144 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,MPI_MOLGEN,SSMP,TISHKOFF, 2 A,G, 406.000000,4602.000000, 0.081070,0.918930, 616 chr1 4159478 4159479 rs35181674 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP,TISHKOFF, 2 A,G, 3161.000000,1847.000000, 0.631190,0.368810, 616 chr1 4159506 4159507 rs143595071 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4941.000000,67.000000, 0.986621,0.013379, 616 chr1 4159508 4159509 rs138139905 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 616 chr1 4159535 4159536 rs142192438 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 4566.000000,442.000000, 0.911741,0.088259, 616 chr1 4159680 4159681 rs77384844 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,T, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop,maf-5-all-pops 616 chr1 4160324 4160324 rs370748509 0 + - - -/TATAT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,BILGI_BIOE, 2 -,TATAT, 3410.000000,1598.000000, 0.680911,0.319089, 616 chr1 4160477 4160478 rs10799200 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 1596.000000,3412.000000, 0.318690,0.681310, maf-5-some-pop,maf-5-all-pops 616 chr1 4160902 4160903 rs76952475 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4738.000000,270.000000, 0.946086,0.053914, maf-5-some-pop,maf-5-all-pops 616 chr1 4160903 4160904 rs7523426 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 342.000000,4666.000000, 0.068291,0.931709, maf-5-some-pop 616 chr1 4161296 4161297 rs76450302 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop 616 chr1 4161868 4161869 rs76133195 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 616 chr1 4162247 4162248 rs76163269 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 323.000000,4685.000000, 0.064497,0.935503, maf-5-some-pop 616 chr1 4162414 4162415 rs12130437 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3364.000000,1644.000000, 0.671725,0.328275, maf-5-some-pop,maf-5-all-pops 616 chr1 4162426 4162427 rs12126029 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1643.000000,3365.000000, 0.328075,0.671925, maf-5-some-pop,maf-5-all-pops 616 chr1 4162492 4162493 rs77964737 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop 616 chr1 4162562 4162563 rs77591952 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,MPI_MOLGEN,SSMP, 2 A,G, 4540.000000,468.000000, 0.906550,0.093451, maf-5-some-pop,maf-5-all-pops 616 chr1 4162832 4162833 rs12130558 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP, 2 A,G, 3361.000000,1647.000000, 0.671126,0.328874, 616 chr1 4162877 4162878 rs12126189 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,HGSV,SC_SNP,SSMP, 2 G,T, 4313.000000,695.000000, 0.861222,0.138778, 616 chr1 4163299 4163300 rs145967682 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 4742.000000,266.000000, 0.946885,0.053115, 616 chr1 4163512 4163513 rs12132409 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,BILGI_BIOE,GMI,HGSV,SC_SNP,SSMP, 2 C,T, 1353.000000,3655.000000, 0.270168,0.729832, 616 chr1 4164186 4164187 rs12564554 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP, 2 A,G, 484.000000,4524.000000, 0.096645,0.903355, 616 chr1 4164281 4164282 rs148858735 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 238.000000,4770.000000, 0.047524,0.952476, 616 chr1 4164389 4164390 rs56013160 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP, 2 C,T, 3649.000000,1359.000000, 0.728634,0.271366, 616 chr1 4164460 4164461 rs61701091 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,SSMP, 2 A,G, 3366.000000,1642.000000, 0.672125,0.327875, 616 chr1 4164483 4164484 rs61705102 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,HGSV,LUNTER,SSMP, 2 -,C, 1355.000000,3653.000000, 0.270567,0.729433, 616 chr1 4164592 4164593 rs57000194 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,SSMP, 2 G,T, 1357.000000,3651.000000, 0.270966,0.729034, 616 chr1 4164643 4164644 rs12132576 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,SC_SNP,SSMP, 2 A,G, 3362.000000,1646.000000, 0.671326,0.328674, 616 chr1 4164649 4164650 rs145926837 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 616 chr1 4164921 4164922 rs61768818 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 1657.000000,3351.000000, 0.330871,0.669129, 616 chr1 4164998 4164999 rs56832623 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 G,T, 4712.000000,296.000000, 0.940895,0.059105, 616 chr1 4165088 4165089 rs139350729 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 323.000000,4685.000000, 0.064497,0.935503, 616 chr1 4165131 4165132 rs74706001 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop 616 chr1 4165197 4165198 rs12073797 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop 616 chr1 4165427 4165428 rs77085369 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop 616 chr1 4165583 4165584 rs79336684 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop 616 chr1 4165742 4165743 rs10399613 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3358.000000,1650.000000, 0.670527,0.329473, maf-5-some-pop,maf-5-all-pops 616 chr1 4166003 4166004 rs10399650 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 2159.000000,2849.000000, 0.431110,0.568890, maf-5-some-pop,maf-5-all-pops 616 chr1 4166022 4166023 rs74049021 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 341.000000,4667.000000, 0.068091,0.931909, maf-5-some-pop,maf-5-all-pops 616 chr1 4166813 4166814 rs12032257 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP, 2 C,T, 3062.000000,1946.000000, 0.611422,0.388578, maf-5-some-pop 616 chr1 4166818 4166819 rs72629592 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSMP, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop,maf-5-all-pops 616 chr1 4166836 4166837 rs78107359 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop 616 chr1 4167219 4167220 rs16840755 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 616 chr1 4167303 4167304 rs60078338 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4640.000000,368.000000, 0.926518,0.073482, maf-5-some-pop 616 chr1 4167548 4167549 rs79863961 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop 616 chr1 4167814 4167815 rs6684067 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 3691.000000,1317.000000, 0.737021,0.262979, maf-5-some-pop,maf-5-all-pops 616 chr1 4168065 4168066 rs7542313 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 540.000000,4468.000000, 0.107827,0.892173, maf-5-some-pop 616 chr1 4168652 4168653 rs10799201 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1380.000000,3628.000000, 0.275559,0.724441, maf-5-some-pop,maf-5-all-pops 616 chr1 4168696 4168697 rs78714318 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4664.000000,344.000000, 0.931310,0.068690, maf-5-some-pop 616 chr1 4168826 4168827 rs9887911 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1308.000000,3700.000000, 0.261182,0.738818, maf-5-some-pop,maf-5-all-pops 616 chr1 4168884 4168885 rs12035606 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 4870.000000,138.000000, 0.972444,0.027556, 616 chr1 4169066 4169067 rs76084603 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 616 chr1 4169088 4169089 rs58929617 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,maf-5-all-pops 616 chr1 4169340 4169341 rs6678453 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 680.000000,4328.000000, 0.135783,0.864217, maf-5-some-pop,maf-5-all-pops 616 chr1 4169513 4169514 rs16840763 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 244.000000,4764.000000, 0.048722,0.951278, maf-5-some-pop 616 chr1 4169552 4169553 rs12080309 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1556.000000,3452.000000, 0.310703,0.689297, maf-5-some-pop,maf-5-all-pops 616 chr1 4169780 4169781 rs12077178 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 616 chr1 4169785 4169786 rs12080434 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop,maf-5-all-pops 616 chr1 4170008 4170009 rs75226241 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4764.000000,244.000000, 0.951278,0.048722, maf-5-some-pop 616 chr1 4170047 4170048 rs12077262 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3694.000000,1314.000000, 0.737620,0.262380, maf-5-some-pop,maf-5-all-pops 616 chr1 4170078 4170079 rs115631479 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop 616 chr1 4170177 4170178 rs12032575 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop 616 chr1 4170248 4170249 rs7548756 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2202.000000,2806.000000, 0.439696,0.560304, maf-5-some-pop,maf-5-all-pops 616 chr1 4171785 4171786 rs10492944 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4657.000000,351.000000, 0.929912,0.070088, maf-5-some-pop 616 chr1 4171827 4171828 rs77516436 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 234.000000,4774.000000, 0.046725,0.953275, maf-5-some-pop 616 chr1 4171955 4171956 rs76985760 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop 616 chr1 4172123 4172124 rs57547822 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4473.000000,535.000000, 0.893171,0.106829, maf-5-some-pop,maf-5-all-pops 616 chr1 4172616 4172617 rs16840780 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop 616 chr1 4173076 4173077 rs16840784 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop 616 chr1 4173505 4173506 rs16840790 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 286.000000,4722.000000, 0.057109,0.942891, maf-5-some-pop 616 chr1 4173840 4173841 rs10492945 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop 616 chr1 4173902 4173903 rs79204896 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop 616 chr1 4174115 4174116 rs10915434 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1604.000000,3404.000000, 0.320288,0.679712, maf-5-some-pop,maf-5-all-pops 616 chr1 4174293 4174294 rs149610995 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 249.000000,4759.000000, 0.049720,0.950280, 616 chr1 4174448 4174449 rs4654484 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1604.000000,3404.000000, 0.320288,0.679712, maf-5-some-pop,maf-5-all-pops 616 chr1 4174988 4174989 rs7519410 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3409.000000,1599.000000, 0.680711,0.319289, maf-5-some-pop,maf-5-all-pops 616 chr1 4175336 4175337 rs61768822 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1600.000000,3408.000000, 0.319489,0.680511, maf-5-some-pop,maf-5-all-pops 616 chr1 4175418 4175419 rs79817596 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, maf-5-some-pop 616 chr1 4175783 4175784 rs12081826 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1305.000000,3703.000000, 0.260583,0.739417, maf-5-some-pop,maf-5-all-pops 616 chr1 4176071 4176072 rs79389402 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 289.000000,4719.000000, 0.057708,0.942292, maf-5-some-pop,maf-5-all-pops 616 chr1 4176105 4176106 rs6670920 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4631.000000,377.000000, 0.924720,0.075280, maf-5-some-pop 616 chr1 4176169 4176170 rs80006918 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 338.000000,4670.000000, 0.067492,0.932508, maf-5-some-pop 616 chr1 4176666 4176667 rs78451862 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop 616 chr1 4177593 4177594 rs72849866 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 616 chr1 4177741 4177742 rs78557694 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 616 chr1 4178302 4178303 rs10737402 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4559.000000,449.000000, 0.910343,0.089657, maf-5-some-pop 616 chr1 4178374 4178391 rs71580252 0 + TGCCTGTGTGAGCAAGA TGCCTGTGTGAGCAAGA -/TGCCTGTGTGAGCAAGA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER, 2 -,TGCCTGTGTGAGCAAGA, 1639.000000,3369.000000, 0.327276,0.672724, 616 chr1 4178409 4178410 rs59792292 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1482.000000,3526.000000, 0.295927,0.704073, maf-5-some-pop,maf-5-all-pops 616 chr1 4178412 4178413 rs58758001 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1653.000000,3355.000000, 0.330072,0.669928, maf-5-some-pop,maf-5-all-pops 616 chr1 4178497 4178498 rs80032261 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 67.000000,4941.000000, 0.013379,0.986621, 616 chr1 4178631 4178632 rs76524407 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, 616 chr1 4178771 4178771 rs57040482 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 4438.000000,570.000000, 0.886182,0.113818, 616 chr1 4178851 4178852 rs57434236 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1720.000000,3288.000000, 0.343450,0.656550, maf-5-some-pop,maf-5-all-pops 616 chr1 4178989 4178990 rs115990293 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop 616 chr1 4179238 4179239 rs16840806 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 217.000000,4791.000000, 0.043331,0.956669, maf-5-some-pop 616 chr1 4179332 4179333 rs111719368 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 G,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 616 chr1 4180534 4180535 rs189605264 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4884.000000,124.000000, 0.975240,0.024760, 616 chr1 4180555 4180556 rs79053885 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 514.000000,4494.000000, 0.102636,0.897364, maf-5-some-pop,maf-5-all-pops 616 chr1 4180589 4180590 rs35774756 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP, 2 -,T, 1666.000000,3342.000000, 0.332668,0.667332, 616 chr1 4180637 4180638 rs12042946 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2426.000000,2582.000000, 0.484425,0.515575, maf-5-some-pop,maf-5-all-pops 616 chr1 4180805 4180806 rs114063298 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4718.000000,290.000000, 0.942093,0.057907, 616 chr1 4180838 4180839 rs12566219 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 530.000000,4478.000000, 0.105831,0.894169, maf-5-some-pop,maf-5-all-pops 616 chr1 4180841 4180842 rs12040805 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3562.000000,1446.000000, 0.711262,0.288738, maf-5-some-pop,maf-5-all-pops 616 chr1 4180903 4180904 rs72849873 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,T, 116.000000,4892.000000, 0.023163,0.976837, maf-5-some-pop,maf-5-all-pops 616 chr1 4181061 4181062 rs116274096 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 616 chr1 4181167 4181168 rs10915436 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop 616 chr1 4181169 4181170 rs76861778 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop 616 chr1 4181395 4181396 rs10753367 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2822.000000,2186.000000, 0.563498,0.436502, maf-5-some-pop,maf-5-all-pops 616 chr1 4181537 4181538 rs16840810 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4402.000000,606.000000, 0.878994,0.121006, maf-5-some-pop 616 chr1 4181572 4181573 rs10799203 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2977.000000,2031.000000, 0.594449,0.405551, maf-5-some-pop,maf-5-all-pops 616 chr1 4182248 4182249 rs60296647 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 616 chr1 4182446 4182446 rs142091486 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,A, 4789.000000,219.000000, 0.956270,0.043730, 616 chr1 4182633 4182634 rs35701497 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 1359.000000,3649.000000, 0.271366,0.728634, 616 chr1 4183005 4183006 rs10915437 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3642.000000,1366.000000, 0.727236,0.272764, maf-5-some-pop,maf-5-all-pops,microattr-tpa 616 chr1 4183086 4183087 rs72849875 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,maf-5-all-pops 616 chr1 4183659 4183660 rs116546476 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 G,T, 4944.000000,64.000000, 0.987220,0.012780, 616 chr1 4183787 4183788 rs116039606 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4721.000000,287.000000, 0.942692,0.057308, 616 chr1 4183986 4183987 rs112127065 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4799.000000,209.000000, 0.958267,0.041733, maf-5-some-pop 616 chr1 4184117 4184118 rs7531421 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2190.000000,2818.000000, 0.437300,0.562700, 616 chr1 4184246 4184247 rs183782779 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4721.000000,287.000000, 0.942692,0.057308, 616 chr1 4184255 4184256 rs34229808 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,ABI,GMI, 2 -,A, 2024.000000,2984.000000, 0.404153,0.595847, 616 chr1 4184714 4184715 rs111452472 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 165.000000,4843.000000, 0.032947,0.967053, 616 chr1 4184764 4184765 rs12087200 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 894.000000,4114.000000, 0.178514,0.821486, 616 chr1 4185001 4185002 rs6675734 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3765.000000,1243.000000, 0.751797,0.248203, maf-5-some-pop,maf-5-all-pops 616 chr1 4185301 4185302 rs557131326 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSIP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 616 chr1 4185418 4185419 rs60987544 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4116.000000,892.000000, 0.821885,0.178115, maf-5-some-pop,maf-5-all-pops 616 chr1 4185512 4185513 rs78575258 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4722.000000,286.000000, 0.942891,0.057109, 616 chr1 4185769 4185770 rs6679136 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3763.000000,1245.000000, 0.751398,0.248602, 616 chr1 4185802 4185803 rs6669476 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1350.000000,3658.000000, 0.269569,0.730431, 616 chr1 4185901 4185904 rs112810028 0 + CCC CCC -/CCC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,BUSHMAN, 2 -,CCC, 2601.000000,2407.000000, 0.519369,0.480631, 616 chr1 4186093 4186094 rs116143055 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 286.000000,4722.000000, 0.057109,0.942891, 616 chr1 4186122 4186123 rs80295651 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4718.000000,290.000000, 0.942093,0.057907, 616 chr1 4186277 4186277 rs144151725 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,EVA-GONL,LUNTER,TISHKOFF, 2 -,T, 4718.000000,290.000000, 0.942093,0.057907, 616 chr1 4186308 4186309 rs6426389 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2241.000000,2767.000000, 0.447484,0.552516, maf-5-some-pop,maf-5-all-pops 616 chr1 4186472 4186473 rs6663976 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 215.000000,4793.000000, 0.042931,0.957069, maf-5-some-pop 616 chr1 4186801 4186802 rs199945230 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,G, 158.000000,4850.000000, 0.031549,0.968450, 616 chr1 4187493 4187494 rs12083774 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 797.000000,4211.000000, 0.159145,0.840855, maf-5-some-pop,maf-5-all-pops 616 chr1 4187515 4187516 rs114138321 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 616 chr1 4187595 4187596 rs74329371 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4741.000000,267.000000, 0.946685,0.053315, maf-5-some-pop 616 chr1 4187641 4187642 rs12087859 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4152.000000,856.000000, 0.829073,0.170927, maf-5-some-pop,maf-5-all-pops 616 chr1 4187820 4187821 rs57905980 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 616 chr1 4187915 4187916 rs77049189 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4187951 4187952 rs4654487 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3056.000000,1952.000000, 0.610224,0.389776, maf-5-some-pop,maf-5-all-pops 616 chr1 4188045 4188046 rs76182970 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4188337 4188338 rs180972489 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4848.000000,160.000000, 0.968051,0.031949, 616 chr1 4188355 4188356 rs114374807 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4188507 4188508 rs79810483 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4840.000000,168.000000, 0.966454,0.033546, 616 chr1 4188582 4188583 rs75614159 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop 616 chr1 4188718 4188719 rs143635831 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 616 chr1 4188736 4188737 rs114971145 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4188839 4188840 rs78315620 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop,maf-5-all-pops 616 chr1 4188856 4188857 rs116546170 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, 616 chr1 4188874 4188875 rs116034153 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4188902 4188903 rs116309039 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4188920 4188921 rs115160846 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 157.000000,4851.000000, 0.031350,0.968650, 616 chr1 4188930 4188931 rs114110099 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4851.000000,157.000000, 0.968650,0.031350, 616 chr1 4189126 4189127 rs145703444 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 161.000000,4847.000000, 0.032149,0.967851, 616 chr1 4189196 4189197 rs75869949 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4783.000000,225.000000, 0.955072,0.044928, maf-5-some-pop,maf-5-all-pops 616 chr1 4189225 4189226 rs114008086 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, 616 chr1 4189300 4189301 rs76074638 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 G,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 616 chr1 4189318 4189319 rs143173661 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4189358 4189359 rs141356199 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4189383 4189384 rs146971327 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4786.000000,222.000000, 0.955671,0.044329, 616 chr1 4189421 4189422 rs115077691 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4189442 4189443 rs117046895 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4189451 4189452 rs111838213 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, 616 chr1 4189483 4189484 rs143513678 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4849.000000,159.000000, 0.968251,0.031749, 616 chr1 4189506 4189507 rs116144211 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4849.000000,159.000000, 0.968251,0.031749, 616 chr1 4189598 4189599 rs115286620 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 4849.000000,159.000000, 0.968251,0.031749, 616 chr1 4189620 4189621 rs74775202 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, maf-5-some-pop 616 chr1 4189628 4189629 rs7536041 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2732.000000,2276.000000, 0.545527,0.454473, maf-5-some-pop,maf-5-all-pops 616 chr1 4189650 4189651 rs115025582 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, 616 chr1 4189689 4189690 rs116402579 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4189898 4189899 rs118154913 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4920.000000,88.000000, 0.982428,0.017572, maf-5-some-pop,maf-5-all-pops 616 chr1 4189918 4189919 rs538234332 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, 616 chr1 4189927 4189928 rs150521862 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 178.000000,4830.000000, 0.035543,0.964457, 616 chr1 4189932 4189933 rs541537524 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 616 chr1 4189940 4189941 rs115927183 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4744.000000,264.000000, 0.947284,0.052716, maf-5-some-pop 616 chr1 4190003 4190004 rs114555497 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 158.000000,4850.000000, 0.031549,0.968450, 616 chr1 4190166 4190167 rs55916310 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 158.000000,4850.000000, 0.031549,0.968450, 616 chr1 4190194 4190195 rs55649961 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4190241 4190242 rs56000451 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4850.000000,158.000000, 0.968450,0.031549, 616 chr1 4190256 4190257 rs56222442 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4190315 4190316 rs553943192 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 71.000000,4937.000000, 0.014177,0.985823, 616 chr1 4190684 4190685 rs4282783 0 + T T G/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4168.000000,840.000000, 0.832268,0.167732, maf-5-some-pop,maf-5-all-pops 616 chr1 4190739 4190740 rs80045094 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 616 chr1 4190981 4190982 rs188464494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4850.000000,158.000000, 0.968450,0.031549, 616 chr1 4190982 4190983 rs181611708 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 158.000000,4850.000000, 0.031549,0.968450, 616 chr1 4191046 4191047 rs78957505 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4850.000000,158.000000, 0.968450,0.031549, 616 chr1 4191357 4191358 rs76665056 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 616 chr1 4191361 4191362 rs146121254 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 616 chr1 4191528 4191529 rs56260353 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, 616 chr1 4191723 4191724 rs4654488 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,WI_SSAHASNP, 2 A,T, 3659.000000,1349.000000, 0.730631,0.269369, maf-5-some-pop 616 chr1 4191769 4191770 rs55709286 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 C,T, 447.000000,4561.000000, 0.089257,0.910743, maf-5-some-pop,maf-5-all-pops 616 chr1 4191771 4191772 rs111902290 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,maf-5-all-pops 616 chr1 4191813 4191816 rs56198003 0 + TTA TTA -/TTA genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,TTA, 451.000000,4557.000000, 0.090056,0.909944, 616 chr1 4191820 4191821 rs114527904 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 616 chr1 4191848 4191849 rs77973408 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 451.000000,4557.000000, 0.090056,0.909944, maf-5-some-pop,maf-5-all-pops 616 chr1 4191858 4191859 rs77586751 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 453.000000,4555.000000, 0.090455,0.909545, maf-5-some-pop,maf-5-all-pops 616 chr1 4192307 4192308 rs10915441 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3098.000000,1910.000000, 0.618610,0.381390, maf-5-some-pop,maf-5-all-pops 616 chr1 4192396 4192397 rs74410087 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 287.000000,4721.000000, 0.057308,0.942692, maf-5-some-pop 616 chr1 4192489 4192490 rs12143754 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3764.000000,1244.000000, 0.751597,0.248403, maf-5-some-pop,maf-5-all-pops 616 chr1 4192592 4192593 rs113194545 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop 616 chr1 4192647 4192648 rs72849896 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4902.000000,106.000000, 0.978834,0.021166, maf-5-some-pop,maf-5-all-pops 616 chr1 4192706 4192707 rs10915442 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2481.000000,2527.000000, 0.495407,0.504593, maf-5-some-pop,maf-5-all-pops 616 chr1 4192853 4192854 rs80160005 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 446.000000,4562.000000, 0.089057,0.910942, maf-5-some-pop 616 chr1 4193217 4193218 rs56111942 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop,maf-5-all-pops 616 chr1 4193225 4193225 rs56060737 0 + - - -/GG genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,GG, 4492.000000,516.000000, 0.896965,0.103035, 616 chr1 4193409 4193410 rs10799206 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop 616 chr1 4193425 4193426 rs12409803 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1958.000000,3050.000000, 0.390974,0.609026, maf-5-some-pop,maf-5-all-pops 616 chr1 4193463 4193464 rs10915443 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2950.000000,2058.000000, 0.589058,0.410942, maf-5-some-pop,maf-5-all-pops 616 chr1 4193550 4193551 rs12568266 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 989.000000,4019.000000, 0.197484,0.802516, 616 chr1 4193872 4193873 rs6693173 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2692.000000,2316.000000, 0.537540,0.462460, maf-5-some-pop,maf-5-all-pops 616 chr1 4194177 4194178 rs79831350 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 617 chr1 4194428 4194429 rs60881198 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 617 chr1 4194711 4194712 rs4131507 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 628.000000,4380.000000, 0.125399,0.874601, maf-5-some-pop 617 chr1 4194777 4194778 rs75440192 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 4838.000000,170.000000, 0.966054,0.033946, 617 chr1 4194799 4194800 rs4131508 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3169.000000,1839.000000, 0.632788,0.367212, maf-5-some-pop,maf-5-all-pops 617 chr1 4194822 4194823 rs4630099 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2372.000000,2636.000000, 0.473642,0.526358, maf-5-some-pop,maf-5-all-pops 617 chr1 4195408 4195409 rs78714053 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, maf-5-some-pop,maf-5-all-pops 617 chr1 4195536 4195537 rs10915444 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2636.000000,2372.000000, 0.526358,0.473642, maf-5-some-pop,maf-5-all-pops 617 chr1 4195697 4195698 rs35986531 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 2636.000000,2372.000000, 0.526358,0.473642, maf-5-some-pop,maf-5-all-pops 617 chr1 4195704 4195705 rs111557960 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 617 chr1 4195954 4195955 rs12118815 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,PJP,SC_SNP,SSMP, 2 A,T, 2323.000000,2685.000000, 0.463858,0.536142, maf-5-some-pop,maf-5-all-pops 617 chr1 4195990 4195991 rs142182438 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 391.000000,4617.000000, 0.078075,0.921925, 617 chr1 4196143 4196144 rs150132582 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4950.000000,58.000000, 0.988419,0.011582, 617 chr1 4196146 4196147 rs193087976 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 528.000000,4480.000000, 0.105431,0.894569, 617 chr1 4196208 4196209 rs145512739 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 4865.000000,143.000000, 0.971446,0.028554, 617 chr1 4196290 4196291 rs114925628 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, maf-5-some-pop,maf-5-all-pops 617 chr1 4196427 4196428 rs34088827 0 + G G A/G genomic single by-cluster,by-frequency,by-1000genomes 0.48 0.09798 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SSMP, 2 A,G, 6.000000,4.000000, 0.600000,0.400000, 617 chr1 4196467 4196468 rs115747487 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 169.000000,4839.000000, 0.033746,0.966254, maf-5-some-pop 617 chr1 4196596 4196597 rs530620243 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 2804.000000,2204.000000, 0.559904,0.440096, 617 chr1 4196597 4196598 rs544254523 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 2204.000000,2804.000000, 0.440096,0.559904, 617 chr1 4196624 4196625 rs529963136 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 2596.000000,2412.000000, 0.518371,0.481629, 617 chr1 4196777 4196778 rs28412783 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,GMI,HGSV,SSAHASNP,SSMP, 2 C,G, 2575.000000,2433.000000, 0.514177,0.485823, 617 chr1 4196798 4196799 rs28404909 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,ENSEMBL,GMI,SSAHASNP,SSMP, 2 A,G, 3106.000000,1902.000000, 0.620208,0.379792, 617 chr1 4196804 4196805 rs536548201 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, 617 chr1 4196808 4196809 rs61768833 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,SSMP, 2 C,T, 2233.000000,2775.000000, 0.445887,0.554113, 617 chr1 4196813 4196817 rs551590194 0 + TAGA TAGA -/TAGA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TAGA, 121.000000,4887.000000, 0.024161,0.975839, 617 chr1 4196817 4196818 rs545664760 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 1051.000000,3957.000000, 0.209864,0.790136, 617 chr1 4196824 4196825 rs75979929 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL, 2 A,G, 2740.000000,2268.000000, 0.547125,0.452875, 617 chr1 4196837 4196838 rs372425112 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,SSMP, 2 G,T, 2404.000000,2604.000000, 0.480032,0.519968, 617 chr1 4197034 4197035 rs6702633 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 2630.000000,2378.000000, 0.525160,0.474840, maf-5-some-pop,maf-5-all-pops 617 chr1 4197071 4197072 rs72851411 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 C,G, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop 617 chr1 4197144 4197145 rs144565714 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 617 chr1 4197255 4197256 rs6663939 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3007.000000,2001.000000, 0.600439,0.399561, maf-5-some-pop,maf-5-all-pops 617 chr1 4197417 4197418 rs4408122 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2328.000000,2680.000000, 0.464856,0.535144, maf-5-some-pop,maf-5-all-pops 617 chr1 4197562 4197563 rs79305507 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 617 chr1 4197641 4197642 rs10915445 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2002.000000,3006.000000, 0.399760,0.600240, maf-5-some-pop,maf-5-all-pops,microattr-tpa 617 chr1 4197841 4197842 rs4233259 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1833.000000,3175.000000, 0.366014,0.633986, maf-5-some-pop,maf-5-all-pops 617 chr1 4197925 4197926 rs111230197 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 617 chr1 4197986 4197987 rs4233260 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2378.000000,2630.000000, 0.474840,0.525160, maf-5-some-pop,maf-5-all-pops 617 chr1 4198115 4198116 rs77214291 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 617 chr1 4198334 4198335 rs78726703 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4752.000000,256.000000, 0.948882,0.051118, maf-5-some-pop,maf-5-all-pops 617 chr1 4198464 4198465 rs72851417 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, maf-5-some-pop,maf-5-all-pops 617 chr1 4198601 4198602 rs4654412 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 3127.000000,1881.000000, 0.624401,0.375599, maf-5-some-pop,maf-5-all-pops 617 chr1 4199171 4199172 rs57352098 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop 617 chr1 4199461 4199462 rs78255968 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop 617 chr1 4199743 4199744 rs75490406 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4754.000000,254.000000, 0.949281,0.050719, maf-5-some-pop 617 chr1 4200064 4200065 rs16840829 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,T, 4367.000000,641.000000, 0.872005,0.127995, maf-5-some-pop 617 chr1 4200168 4200169 rs16840831 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 632.000000,4376.000000, 0.126198,0.873802, maf-5-some-pop 617 chr1 4200219 4200221 rs149069262 0 + AC AC -/AC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,AC, 123.000000,4885.000000, 0.024561,0.975439, 617 chr1 4200261 4200262 rs28707342 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4379.000000,629.000000, 0.874401,0.125599, maf-5-some-pop,maf-5-all-pops 617 chr1 4200393 4200394 rs12091687 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4182.000000,826.000000, 0.835064,0.164936, maf-5-some-pop 617 chr1 4200488 4200489 rs75359796 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,maf-5-all-pops 617 chr1 4200515 4200516 rs16840833 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 631.000000,4377.000000, 0.125998,0.874002, maf-5-some-pop 617 chr1 4200574 4200575 rs78386849 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4696.000000,312.000000, 0.937700,0.062300, maf-5-some-pop,maf-5-all-pops 617 chr1 4200625 4200626 rs16840835 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 630.000000,4378.000000, 0.125799,0.874201, maf-5-some-pop 617 chr1 4200656 4200657 rs78590447 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop 617 chr1 4200836 4200837 rs11808881 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,CSHL-HAPMAP,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 311.000000,4697.000000, 0.062101,0.937899, maf-5-some-pop 617 chr1 4200856 4200857 rs16840836 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 635.000000,4373.000000, 0.126797,0.873203, maf-5-some-pop 617 chr1 4201045 4201046 rs16840837 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 617 chr1 4201348 4201349 rs16840838 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 842.000000,4166.000000, 0.168131,0.831869, maf-5-some-pop 617 chr1 4201354 4201355 rs16840839 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4379.000000,629.000000, 0.874401,0.125599, maf-5-some-pop 617 chr1 4201497 4201498 rs115518111 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 170.000000,4838.000000, 0.033946,0.966054, maf-5-some-pop,maf-5-all-pops 617 chr1 4201526 4201527 rs58283873 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,T, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 617 chr1 4201668 4201668 rs75712596 0 + - - -/AC genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,AC, 4379.000000,629.000000, 0.874401,0.125599, 617 chr1 4201814 4201815 rs4654492 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,T, 3617.000000,1391.000000, 0.722244,0.277756, maf-5-some-pop 617 chr1 4201919 4201920 rs76181076 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop,maf-5-all-pops 617 chr1 4202303 4202304 rs10915446 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4695.000000,313.000000, 0.937500,0.062500, maf-5-some-pop,maf-5-all-pops 617 chr1 4202342 4202343 rs10799207 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2933.000000,2075.000000, 0.585663,0.414337, maf-5-some-pop,maf-5-all-pops 617 chr1 4202414 4202415 rs79461557 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 246.000000,4762.000000, 0.049121,0.950879, maf-5-some-pop 617 chr1 4202448 4202449 rs57452176 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 8 1000GENOMES,BL,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 2955.000000,2053.000000, 0.590056,0.409944, 617 chr1 4202460 4202461 rs78654805 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB, 2 A,C, 4379.000000,629.000000, 0.874401,0.125599, maf-5-some-pop,maf-5-all-pops 617 chr1 4202656 4202657 rs112742770 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4755.000000,253.000000, 0.949481,0.050519, 617 chr1 4202817 4202818 rs7542208 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2080.000000,2928.000000, 0.415335,0.584665, maf-5-some-pop,maf-5-all-pops 617 chr1 4202992 4202993 rs12143662 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2716.000000,2292.000000, 0.542332,0.457668, maf-5-some-pop,maf-5-all-pops 617 chr1 4203142 4203146 rs200523860 0 + TGTA TGTA -/TGTA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,TGTA, 59.000000,4949.000000, 0.011781,0.988219, 617 chr1 4203276 4203277 rs115080480 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, 617 chr1 4203307 4203308 rs553343817 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 87.000000,4921.000000, 0.017372,0.982628, 617 chr1 4203562 4203563 rs12096127 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2084.000000,2924.000000, 0.416134,0.583866, maf-5-some-pop,maf-5-all-pops 617 chr1 4203989 4203990 rs72851444 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 630.000000,4378.000000, 0.125799,0.874201, maf-5-some-pop 617 chr1 4204559 4204560 rs56397723 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV, 2 C,T, 2927.000000,2081.000000, 0.584465,0.415535, 617 chr1 4204646 4204649 rs377174059 0 + ACT ACT -/ACT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,ACT, 106.000000,4902.000000, 0.021166,0.978834, 617 chr1 4204717 4204717 rs201625422 0 + - - -/CA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,GMI,WARNICH_LAB, 2 -,CA, 2428.000000,2580.000000, 0.484824,0.515176, 617 chr1 4204880 4204883 rs542928187 0 + ATC ATC -/ATC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSIP, 2 -,ATC, 134.000000,4874.000000, 0.026757,0.973243, 617 chr1 4204909 4204910 rs535697350 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4503.000000,505.000000, 0.899161,0.100839, 617 chr1 4204919 4204920 rs111710247 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,T, 4870.000000,138.000000, 0.972444,0.027556, 617 chr1 4205053 4205054 rs77886501 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4759.000000,249.000000, 0.950280,0.049720, 617 chr1 4205446 4205447 rs58076045 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 G,T, 198.000000,4810.000000, 0.039537,0.960463, maf-5-some-pop,maf-5-all-pops 617 chr1 4205669 4205670 rs12117021 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA-UK,SC_SNP,SSMP, 2 C,T, 4788.000000,220.000000, 0.956070,0.043930, maf-5-some-pop 617 chr1 4205813 4205814 rs75186165 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 617 chr1 4206024 4206025 rs78379544 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4763.000000,245.000000, 0.951078,0.048922, maf-5-some-pop 617 chr1 4206099 4206100 rs10915447 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1113.000000,3895.000000, 0.222244,0.777756, maf-5-some-pop 617 chr1 4206209 4206210 rs9426471 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1350.000000,3658.000000, 0.269569,0.730431, maf-5-some-pop,maf-5-all-pops 617 chr1 4206249 4206250 rs77155964 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 154.000000,4854.000000, 0.030751,0.969249, 617 chr1 4206287 4206288 rs9426494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2221.000000,2787.000000, 0.443490,0.556510, maf-5-some-pop,maf-5-all-pops 617 chr1 4206414 4206415 rs76028522 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,GMI,SSMP, 2 C,G, 1070.000000,3938.000000, 0.213658,0.786342, 617 chr1 4206831 4206832 rs72851450 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 617 chr1 4206856 4206856 rs138034037 0 + - - -/CACACACACACG genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,CACACACACACG, 3380.000000,1628.000000, 0.674920,0.325080, 617 chr1 4206961 4206962 rs12088933 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1118.000000,3890.000000, 0.223243,0.776757, maf-5-some-pop 617 chr1 4207390 4207391 rs77102659 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 131.000000,4877.000000, 0.026158,0.973842, 617 chr1 4207397 4207398 rs6672998 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1465.000000,3543.000000, 0.292532,0.707468, maf-5-some-pop,maf-5-all-pops 617 chr1 4207411 4207412 rs17406305 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP, 2 C,T, 4211.000000,797.000000, 0.840855,0.159145, maf-5-some-pop,maf-5-all-pops 617 chr1 4207524 4207525 rs10915448 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 1117.000000,3891.000000, 0.223043,0.776957, maf-5-some-pop 617 chr1 4207534 4207535 rs10915449 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3893.000000,1115.000000, 0.777356,0.222644, maf-5-some-pop 617 chr1 4207690 4207691 rs113696488 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop,maf-5-all-pops 617 chr1 4207698 4207699 rs10915450 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1117.000000,3891.000000, 0.223043,0.776957, maf-5-some-pop 617 chr1 4208166 4208167 rs61768848 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4610.000000,398.000000, 0.920527,0.079473, 617 chr1 4208295 4208296 rs7528351 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1643.000000,3365.000000, 0.328075,0.671925, 617 chr1 4208936 4208937 rs9426472 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1697.000000,3311.000000, 0.338858,0.661142, maf-5-some-pop,maf-5-all-pops 617 chr1 4209056 4209057 rs74880958 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop,maf-5-all-pops 617 chr1 4209077 4209078 rs201278829 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,T, 65.000000,4943.000000, 0.012979,0.987021, 617 chr1 4209131 4209132 rs72851463 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 474.000000,4534.000000, 0.094649,0.905351, maf-5-some-pop 617 chr1 4209160 4209161 rs60337353 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 617 chr1 4209161 4209162 rs116226314 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 617 chr1 4209344 4209345 rs77785000 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 617 chr1 4209372 4209373 rs78576212 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 617 chr1 4209653 4209654 rs78691685 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 617 chr1 4209743 4209744 rs16840865 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4594.000000,414.000000, 0.917332,0.082668, maf-5-some-pop 617 chr1 4210163 4210164 rs6690263 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3749.000000,1259.000000, 0.748602,0.251398, maf-5-some-pop,maf-5-all-pops 617 chr1 4210203 4210204 rs6695126 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 617 chr1 4210401 4210402 rs6683453 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2678.000000,2330.000000, 0.534744,0.465256, maf-5-some-pop,maf-5-all-pops 617 chr1 4210454 4210455 rs9426473 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 A,G, 806.000000,4202.000000, 0.160942,0.839058, maf-5-some-pop,maf-5-all-pops 617 chr1 4210477 4210478 rs9426496 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1286.000000,3722.000000, 0.256789,0.743211, maf-5-some-pop 617 chr1 4210629 4210630 rs55952921 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, 617 chr1 4211597 4211598 rs61770865 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3972.000000,1036.000000, 0.793131,0.206869, 617 chr1 4211646 4211647 rs61770866 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1033.000000,3975.000000, 0.206270,0.793730, 617 chr1 4211716 4211716 rs112393706 0 + - - -/AG genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI, 2 -,AG, 1366.000000,3642.000000, 0.272764,0.727236, 617 chr1 4211739 4211740 rs12752733 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1737.000000,3271.000000, 0.346845,0.653155, maf-5-some-pop,maf-5-all-pops 617 chr1 4211869 4211869 rs560993856 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 3015.000000,1993.000000, 0.602037,0.397963, 617 chr1 4211963 4211964 rs61770867 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 3975.000000,1033.000000, 0.793730,0.206270, 617 chr1 4212029 4212030 rs368818195 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSIP,SSMP, 2 -,T, 130.000000,4878.000000, 0.025959,0.974042, 617 chr1 4212156 4212157 rs112968909 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4575.000000,433.000000, 0.913538,0.086462, maf-5-some-pop,maf-5-all-pops 617 chr1 4212341 4212342 rs61770868 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3242.000000,1766.000000, 0.647364,0.352636, maf-5-some-pop,maf-5-all-pops 617 chr1 4212584 4212585 rs78342267 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 157.000000,4851.000000, 0.031350,0.968650, 617 chr1 4212625 4212626 rs77995118 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4851.000000,157.000000, 0.968650,0.031350, 617 chr1 4212678 4212679 rs116145394 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 617 chr1 4213055 4213056 rs72851474 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 409.000000,4599.000000, 0.081669,0.918331, maf-5-some-pop 617 chr1 4213068 4213069 rs4654494 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3747.000000,1261.000000, 0.748203,0.251797, maf-5-some-pop,maf-5-all-pops 617 chr1 4213328 4213329 rs7544319 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF,WI_SSAHASNP, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 617 chr1 4213340 4213341 rs55759139 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3180.000000,1828.000000, 0.634984,0.365016, maf-5-some-pop,maf-5-all-pops 617 chr1 4213899 4213900 rs4498774 0 + A A A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3696.000000,1312.000000, 0.738019,0.261981, maf-5-some-pop,maf-5-all-pops 617 chr1 4214030 4214031 rs12062122 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3970.000000,1038.000000, 0.792732,0.207268, maf-5-some-pop 617 chr1 4214104 4214105 rs12062172 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4044.000000,964.000000, 0.807508,0.192492, maf-5-some-pop 617 chr1 4214274 4214275 rs72851477 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 420.000000,4588.000000, 0.083866,0.916134, maf-5-some-pop 617 chr1 4214332 4214333 rs139898087 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 68.000000,4940.000000, 0.013578,0.986422, 617 chr1 4214414 4214417 rs141167827 0 + ATC ATC -/ATC genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,ATC, 1037.000000,3971.000000, 0.207069,0.792931, 617 chr1 4214607 4214608 rs115856330 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 76.000000,4932.000000, 0.015176,0.984824, 617 chr1 4214726 4214727 rs61770870 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,TISHKOFF, 2 C,G, 3970.000000,1038.000000, 0.792732,0.207268, 617 chr1 4214732 4214735 rs149906434 0 + AAC AAC -/AAC genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,GMI,LUNTER,PJP,SSMP, 2 -,AAC, 1260.000000,3748.000000, 0.251597,0.748403, 617 chr1 4214952 4214954 rs145658928 0 + TA TA -/TA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,BILGI_BIOE, 2 -,TA, 875.000000,4133.000000, 0.174720,0.825280, 617 chr1 4214963 4214964 rs61124422 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BILGI_BIOE,GMI,HGSV, 2 A,T, 1005.000000,4003.000000, 0.200679,0.799321, 617 chr1 4215022 4215023 rs72631019 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 1201.000000,3807.000000, 0.239816,0.760184, maf-5-some-pop,maf-5-all-pops 617 chr1 4215113 4215114 rs77056515 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 A,G, 180.000000,4828.000000, 0.035942,0.964058, maf-5-some-pop,maf-5-all-pops 617 chr1 4215136 4215136 rs143222369 0 + - - -/ATT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,ATT, 3948.000000,1060.000000, 0.788339,0.211661, 617 chr1 4215203 4215204 rs113580451 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 413.000000,4595.000000, 0.082468,0.917532, maf-5-some-pop,maf-5-all-pops 617 chr1 4215253 4215254 rs140571333 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, 617 chr1 4215494 4215495 rs72851479 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 423.000000,4585.000000, 0.084465,0.915535, maf-5-some-pop 617 chr1 4215869 4215870 rs12060894 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1033.000000,3975.000000, 0.206270,0.793730, 617 chr1 4215917 4215918 rs12065060 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1033.000000,3975.000000, 0.206270,0.793730, 617 chr1 4216164 4216165 rs9988443 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1262.000000,3746.000000, 0.251997,0.748003, maf-5-some-pop,maf-5-all-pops 617 chr1 4216298 4216299 rs10915451 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1035.000000,3973.000000, 0.206669,0.793331, maf-5-some-pop,maf-5-all-pops 617 chr1 4216374 4216375 rs10915452 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1034.000000,3974.000000, 0.206470,0.793530, maf-5-some-pop 617 chr1 4216769 4216770 rs4336820 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 617 chr1 4216780 4216781 rs114518589 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, 617 chr1 4216803 4216804 rs75639001 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop 617 chr1 4216861 4216862 rs4609397 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4004.000000,1004.000000, 0.799521,0.200479, maf-5-some-pop,maf-5-all-pops 617 chr1 4216867 4216868 rs58972368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 617 chr1 4217218 4217219 rs72851483 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 435.000000,4573.000000, 0.086861,0.913139, maf-5-some-pop 617 chr1 4217221 4217222 rs116403423 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 155.000000,4853.000000, 0.030950,0.969050, 617 chr1 4217285 4217286 rs12095912 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop 617 chr1 4217289 4217290 rs12062237 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 617 chr1 4217339 4217340 rs72631022 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 617 chr1 4217419 4217420 rs56307965 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2737.000000,2271.000000, 0.546526,0.453474, 617 chr1 4217428 4217429 rs149760269 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 617 chr1 4217661 4217661 rs200089698 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,TISHKOFF, 2 -,T, 4895.000000,113.000000, 0.977436,0.022564, 617 chr1 4217667 4217668 rs115140573 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 128.000000,4880.000000, 0.025559,0.974441, 617 chr1 4217681 4217682 rs78688409 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, 617 chr1 4217866 4217867 rs77965940 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop,maf-5-all-pops 617 chr1 4218043 4218044 rs72851488 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 814.000000,4194.000000, 0.162540,0.837460, maf-5-some-pop,maf-5-all-pops 617 chr1 4218143 4218144 rs72851491 0 + C C A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 4 A,C,G,T, 660.000000,4176.000000,158.000000,14.000000, 0.131789,0.833866,0.031549,0.002796, maf-5-some-pop,maf-5-all-pops 617 chr1 4218380 4218381 rs12402282 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop,maf-5-all-pops 617 chr1 4218676 4218677 rs147999895 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 617 chr1 4218758 4218759 rs61770874 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1042.000000,3966.000000, 0.208067,0.791933, maf-5-some-pop,maf-5-all-pops 617 chr1 4218780 4218781 rs75273656 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4853.000000,155.000000, 0.969050,0.030950, 617 chr1 4218795 4218796 rs12402314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4345.000000,663.000000, 0.867612,0.132388, maf-5-some-pop,maf-5-all-pops 617 chr1 4219055 4219056 rs3890798 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1463.000000,3545.000000, 0.292133,0.707867, maf-5-some-pop,maf-5-all-pops 617 chr1 4219093 4219094 rs57921347 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop,maf-5-all-pops 617 chr1 4219286 4219287 rs58879336 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1210.000000,3798.000000, 0.241613,0.758387, maf-5-some-pop,maf-5-all-pops 617 chr1 4219322 4219323 rs60139782 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop,maf-5-all-pops 617 chr1 4219698 4219698 rs149704184 0 + - - -/C/CT genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,GMI,LUNTER,TISHKOFF,WARNICH_LAB, 3 -,C,CT, 4601.000000,52.000000,355.000000, 0.918730,0.010383,0.070887, 617 chr1 4219709 4219710 rs114367727 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,TISHKOFF, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop 617 chr1 4219734 4219735 rs6426391 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1281.000000,3727.000000, 0.255791,0.744209, maf-5-some-pop,maf-5-all-pops 617 chr1 4219746 4219747 rs75151855 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4590.000000,418.000000, 0.916534,0.083467, maf-5-some-pop,maf-5-all-pops 617 chr1 4219995 4219996 rs68059610 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 1256.000000,3752.000000, 0.250799,0.749201, maf-5-some-pop,maf-5-all-pops 617 chr1 4220008 4220009 rs115194313 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, 617 chr1 4220094 4220095 rs7513344 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,WI_SSAHASNP, 2 A,C, 167.000000,4841.000000, 0.033347,0.966653, 617 chr1 4220098 4220099 rs142296219 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 64.000000,4944.000000, 0.012780,0.987220, 617 chr1 4220155 4220156 rs12403259 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI, 2 A,G, 3795.000000,1213.000000, 0.757788,0.242212, 617 chr1 4220187 4220188 rs139646225 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 64.000000,4944.000000, 0.012780,0.987220, 617 chr1 4220224 4220225 rs112928186 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 617 chr1 4220228 4220229 rs12403271 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4344.000000,664.000000, 0.867412,0.132588, 617 chr1 4220254 4220255 rs12403589 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 663.000000,4345.000000, 0.132388,0.867612, 617 chr1 4220259 4220260 rs74912470 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,TISHKOFF, 2 C,T, 663.000000,4345.000000, 0.132388,0.867612, 617 chr1 4220280 4220280 rs199630342 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,G, 2622.000000,2386.000000, 0.523562,0.476438, 617 chr1 4220308 4220309 rs75116392 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,G, 665.000000,4343.000000, 0.132788,0.867212, maf-5-some-pop,maf-5-all-pops 617 chr1 4220313 4220314 rs74810100 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4344.000000,664.000000, 0.867412,0.132588, maf-5-some-pop,maf-5-all-pops 617 chr1 4220458 4220459 rs74933089 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 398.000000,4610.000000, 0.079473,0.920527, maf-5-some-pop,maf-5-all-pops 617 chr1 4220499 4220500 rs72851501 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop,maf-5-all-pops 617 chr1 4220543 4220544 rs72852604 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop,maf-5-all-pops 617 chr1 4220800 4220801 rs112489416 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 661.000000,4347.000000, 0.131989,0.868011, maf-5-some-pop,maf-5-all-pops 617 chr1 4220874 4220875 rs72852607 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4347.000000,661.000000, 0.868011,0.131989, maf-5-some-pop,maf-5-all-pops 617 chr1 4220889 4220890 rs72852609 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 661.000000,4347.000000, 0.131989,0.868011, maf-5-some-pop,maf-5-all-pops 617 chr1 4220927 4220928 rs72852611 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop,maf-5-all-pops 617 chr1 4221005 4221006 rs113272303 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,G, 4327.000000,681.000000, 0.864018,0.135982, 617 chr1 4221051 4221052 rs111342461 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4352.000000,656.000000, 0.869010,0.130990, 617 chr1 4221067 4221068 rs12403924 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 669.000000,4339.000000, 0.133586,0.866414, 617 chr1 4221123 4221124 rs111575681 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 649.000000,4359.000000, 0.129593,0.870407, 617 chr1 4221128 4221129 rs530989654 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 645.000000,4363.000000, 0.128794,0.871206, 617 chr1 4221136 4221136 rs572350401 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 4646.000000,362.000000, 0.927716,0.072284, 617 chr1 4221178 4221179 rs12403632 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,SSMP,TISHKOFF, 2 A,C, 4352.000000,656.000000, 0.869010,0.130990, 617 chr1 4221300 4221301 rs12403948 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 663.000000,4345.000000, 0.132388,0.867612, maf-5-some-pop,maf-5-all-pops 617 chr1 4221317 4221318 rs116609430 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4854.000000,154.000000, 0.969249,0.030751, 617 chr1 4221330 4221331 rs59406069 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 A,C, 55.000000,4953.000000, 0.010982,0.989018, 617 chr1 4221434 4221435 rs4414012 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3725.000000,1283.000000, 0.743810,0.256190, maf-5-some-pop,maf-5-all-pops 617 chr1 4221570 4221571 rs61140818 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 364.000000,4644.000000, 0.072684,0.927316, maf-5-some-pop,maf-5-all-pops 617 chr1 4221598 4221599 rs4614226 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 5.000000,6.000000, 0.454545,0.545455, maf-5-some-pop,maf-5-all-pops 617 chr1 4221750 4221751 rs12125095 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 540.000000,4468.000000, 0.107827,0.892173, maf-5-some-pop 617 chr1 4222405 4222406 rs4654495 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3793.000000,1215.000000, 0.757388,0.242612, maf-5-some-pop,maf-5-all-pops 617 chr1 4222440 4222441 rs77047201 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 617 chr1 4222441 4222442 rs12123665 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4032.000000,976.000000, 0.805112,0.194888, maf-5-some-pop 617 chr1 4222683 4222684 rs77595582 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4726.000000,282.000000, 0.943690,0.056310, maf-5-some-pop,maf-5-all-pops 617 chr1 4222751 4222751 rs57863388 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BGI,BL,BUSHMAN,EVA-GONL,GMI,SSMP, 2 -,T, 3335.000000,1673.000000, 0.665935,0.334065, 617 chr1 4222992 4222993 rs111374170 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 130.000000,4878.000000, 0.025959,0.974042, 617 chr1 4223005 4223006 rs4654413 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 606.000000,4402.000000, 0.121006,0.878994, 617 chr1 4223043 4223044 rs150982841 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4668.000000,340.000000, 0.932109,0.067891, 617 chr1 4223074 4223075 rs4654414 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2865.000000,2143.000000, 0.572085,0.427915, 617 chr1 4223200 4223201 rs10915453 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3748.000000,1260.000000, 0.748403,0.251597, maf-5-some-pop,maf-5-all-pops 617 chr1 4223288 4223289 rs10915454 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop,maf-5-all-pops 617 chr1 4223427 4223428 rs4233261 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4655.000000,353.000000, 0.929513,0.070487, 617 chr1 4223558 4223559 rs10915455 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop,maf-5-all-pops 617 chr1 4223566 4223567 rs75972714 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 617 chr1 4223602 4223603 rs10915456 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4628.000000,380.000000, 0.924121,0.075879, maf-5-some-pop,maf-5-all-pops 617 chr1 4223663 4223664 rs10915457 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4663.000000,345.000000, 0.931110,0.068890, maf-5-some-pop,maf-5-all-pops 617 chr1 4223733 4223734 rs10915458 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 333.000000,4675.000000, 0.066494,0.933506, maf-5-some-pop,maf-5-all-pops 617 chr1 4223797 4223798 rs72852618 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 617 chr1 4223887 4223888 rs6679293 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 617 chr1 4224051 4224052 rs12126414 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SC_SNP, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 617 chr1 4224102 4224103 rs4654496 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 889.000000,4119.000000, 0.177516,0.822484, maf-5-some-pop,maf-5-all-pops 617 chr1 4224314 4224315 rs78314286 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4734.000000,274.000000, 0.945288,0.054713, maf-5-some-pop 617 chr1 4224439 4224440 rs75130430 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4889.000000,119.000000, 0.976238,0.023762, 617 chr1 4224474 4224475 rs77781585 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 119.000000,4889.000000, 0.023762,0.976238, 617 chr1 4224557 4224558 rs4654497 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 617 chr1 4225086 4225087 rs78485316 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4575.000000,433.000000, 0.913538,0.086462, maf-5-some-pop 617 chr1 4225094 4225095 rs74722458 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 433.000000,4575.000000, 0.086462,0.913538, maf-5-some-pop,maf-5-all-pops 617 chr1 4225344 4225345 rs115340078 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4932.000000,76.000000, 0.984824,0.015176, 617 chr1 4225406 4225407 rs149951089 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 617 chr1 4226780 4226781 rs72852623 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF, 2 G,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop,maf-5-all-pops 617 chr1 4227093 4227094 rs16840868 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4464.000000,544.000000, 0.891374,0.108626, maf-5-some-pop 617 chr1 4227212 4227213 rs16840869 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop,maf-5-all-pops 617 chr1 4227247 4227248 rs16840872 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop,maf-5-all-pops 617 chr1 4227319 4227320 rs16840873 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4593.000000,415.000000, 0.917133,0.082867, maf-5-some-pop 617 chr1 4227350 4227351 rs55786972 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,HGSV,ILLUMINA, 2 G,T, 4945.000000,63.000000, 0.987420,0.012580, 617 chr1 4227430 4227431 rs16840875 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4464.000000,544.000000, 0.891374,0.108626, maf-5-some-pop 617 chr1 4227431 4227432 rs78857469 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 617 chr1 4227560 4227561 rs16840876 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4761.000000,247.000000, 0.950679,0.049321, maf-5-some-pop 617 chr1 4227623 4227624 rs56212601 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 544.000000,4464.000000, 0.108626,0.891374, maf-5-some-pop 617 chr1 4227633 4227634 rs4468133 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1598.000000,3410.000000, 0.319089,0.680911, maf-5-some-pop 617 chr1 4228242 4228243 rs112939442 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 617 chr1 4228311 4228312 rs4654498 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 0.000000,5008.000000, 0.000000,1.000000, 617 chr1 4228449 4228450 rs4654499 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3408.000000,1600.000000, 0.680511,0.319489, maf-5-some-pop 617 chr1 4228547 4228548 rs114722869 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 161.000000,4847.000000, 0.032149,0.967851, 617 chr1 4228979 4228980 rs78400195 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 129.000000,4879.000000, 0.025759,0.974241, 617 chr1 4229583 4229584 rs59626824 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4448.000000,560.000000, 0.888179,0.111821, maf-5-some-pop 617 chr1 4229841 4229842 rs56334208 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 156.000000,4852.000000, 0.031150,0.968850, 617 chr1 4229883 4229884 rs60688879 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 394.000000,4614.000000, 0.078674,0.921326, 617 chr1 4230080 4230081 rs56106191 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4852.000000,156.000000, 0.968850,0.031150, 617 chr1 4230462 4230463 rs10915459 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,T, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop 617 chr1 4230598 4230599 rs61512183 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4631.000000,377.000000, 0.924720,0.075280, maf-5-some-pop,maf-5-all-pops 617 chr1 4230614 4230615 rs76665400 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop,maf-5-all-pops 617 chr1 4230703 4230704 rs58106722 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 697.000000,4311.000000, 0.139177,0.860823, maf-5-some-pop,maf-5-all-pops 617 chr1 4230711 4230712 rs3890729 0 - A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 617 chr1 4230973 4230974 rs12067530 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 542.000000,4466.000000, 0.108227,0.891773, maf-5-some-pop,maf-5-all-pops 617 chr1 4231051 4231052 rs12073595 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4134.000000,874.000000, 0.825479,0.174521, maf-5-some-pop 617 chr1 4231200 4231201 rs12074880 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 539.000000,4469.000000, 0.107628,0.892372, maf-5-some-pop,maf-5-all-pops 617 chr1 4231208 4231209 rs75345781 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop,maf-5-all-pops 617 chr1 4231254 4231255 rs60142916 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4636.000000,372.000000, 0.925719,0.074281, maf-5-some-pop,maf-5-all-pops 617 chr1 4231328 4231329 rs12073711 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4633.000000,375.000000, 0.925120,0.074880, maf-5-some-pop,maf-5-all-pops 617 chr1 4231450 4231451 rs10915460 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2713.000000,2295.000000, 0.541733,0.458267, maf-5-some-pop,maf-5-all-pops 617 chr1 4231557 4231558 rs75291763 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4612.000000,396.000000, 0.920927,0.079074, maf-5-some-pop 617 chr1 4231684 4231685 rs10915462 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1085.000000,3923.000000, 0.216653,0.783347, maf-5-some-pop,maf-5-all-pops 617 chr1 4231795 4231796 rs6688428 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 2067.000000,2941.000000, 0.412740,0.587260, maf-5-some-pop,maf-5-all-pops 617 chr1 4231805 4231806 rs6688431 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 2503.000000,2505.000000, 0.499800,0.500200, maf-5-some-pop,maf-5-all-pops 617 chr1 4231842 4231843 rs6680706 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4000.000000,1008.000000, 0.798722,0.201278, maf-5-some-pop 617 chr1 4231843 4231844 rs72631030 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 746.000000,4262.000000, 0.148962,0.851038, maf-5-some-pop,maf-5-all-pops 617 chr1 4231927 4231928 rs117576885 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 617 chr1 4231963 4231964 rs12032295 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,GMI,SC_SNP,SSAHASNP,TISHKOFF, 2 C,T, 3455.000000,1553.000000, 0.689896,0.310104, 617 chr1 4231966 4231971 rs149330411 0 + TTGTT TTGTT -/TTGTT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,GMI,LUNTER,SSMP, 2 -,TTGTT, 4279.000000,729.000000, 0.854433,0.145567, 617 chr1 4232006 4232007 rs10915463 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop,maf-5-all-pops 617 chr1 4232043 4232044 rs114498155 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 617 chr1 4232160 4232161 rs61770876 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3789.000000,1219.000000, 0.756589,0.243411, maf-5-some-pop,maf-5-all-pops 617 chr1 4232213 4232214 rs72852631 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop,maf-5-all-pops 617 chr1 4232361 4232362 rs12032430 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop,maf-5-all-pops 617 chr1 4232516 4232517 rs12405392 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3478.000000,1530.000000, 0.694489,0.305511, maf-5-some-pop,maf-5-all-pops 617 chr1 4232538 4232539 rs56827341 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4269.000000,739.000000, 0.852436,0.147564, maf-5-some-pop,maf-5-all-pops 617 chr1 4232720 4232721 rs74808532 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 617 chr1 4232793 4232794 rs11583685 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 744.000000,4264.000000, 0.148562,0.851438, maf-5-some-pop,maf-5-all-pops 617 chr1 4232797 4232798 rs12125840 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 488.000000,4520.000000, 0.097444,0.902556, maf-5-some-pop,maf-5-all-pops 617 chr1 4232980 4232981 rs12130304 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop,maf-5-all-pops 617 chr1 4233187 4233188 rs61770877 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 4717.000000,291.000000, 0.941893,0.058107, maf-5-some-pop,maf-5-all-pops 617 chr1 4233379 4233380 rs6694801 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 486.000000,4522.000000, 0.097045,0.902955, maf-5-some-pop,maf-5-all-pops 617 chr1 4233480 4233481 rs113506320 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4925.000000,83.000000, 0.983427,0.016573, 617 chr1 4233532 4233533 rs10799209 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3981.000000,1027.000000, 0.794928,0.205072, maf-5-some-pop,maf-5-all-pops 617 chr1 4233716 4233717 rs12077718 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 617 chr1 4233727 4233728 rs6695120 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1504.000000,3504.000000, 0.300319,0.699681, maf-5-some-pop,maf-5-all-pops 617 chr1 4233809 4233810 rs6695203 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 1493.000000,3515.000000, 0.298123,0.701877, maf-5-some-pop,maf-5-all-pops 617 chr1 4233934 4233935 rs57254164 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4577.000000,431.000000, 0.913938,0.086062, maf-5-some-pop 617 chr1 4234052 4234053 rs61770878 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1865.000000,3143.000000, 0.372404,0.627596, maf-5-some-pop,maf-5-all-pops 617 chr1 4234442 4234443 rs10915464 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4413.000000,595.000000, 0.881190,0.118810, maf-5-some-pop 617 chr1 4234512 4234513 rs6690519 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop 617 chr1 4234799 4234799 rs35271731 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 8 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,G, 3329.000000,1679.000000, 0.664736,0.335264, 617 chr1 4234811 4234812 rs61037363 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop,maf-5-all-pops 617 chr1 4235021 4235022 rs114669551 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4770.000000,238.000000, 0.952476,0.047524, maf-5-some-pop,maf-5-all-pops 617 chr1 4235505 4235507 rs140952062 0 + TT TT -/TT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BILGI_BIOE,PJP,SSMP, 2 -,TT, 4073.000000,935.000000, 0.813299,0.186701, 617 chr1 4235556 4235557 rs113947747 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,SSMP, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 617 chr1 4235767 4235768 rs4654501 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3887.000000,1121.000000, 0.776158,0.223842, maf-5-some-pop,maf-5-all-pops 617 chr1 4235775 4235776 rs78025732 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 617 chr1 4236436 4236437 rs4531262 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1110.000000,3898.000000, 0.221645,0.778355, maf-5-some-pop,maf-5-all-pops 617 chr1 4236981 4236982 rs4233262 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1221.000000,3787.000000, 0.243810,0.756190, maf-5-some-pop,maf-5-all-pops 617 chr1 4237161 4237162 rs12726068 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 3912.000000,1096.000000, 0.781150,0.218850, maf-5-some-pop,maf-5-all-pops 617 chr1 4237285 4237286 rs12741551 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 1096.000000,3912.000000, 0.218850,0.781150, maf-5-some-pop,maf-5-all-pops 617 chr1 4237353 4237354 rs79942510 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 617 chr1 4237520 4237521 rs115192290 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 617 chr1 4237594 4237595 rs34927664 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,T, 3791.000000,1217.000000, 0.756989,0.243011, maf-5-some-pop,maf-5-all-pops 617 chr1 4237630 4237631 rs74879840 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 617 chr1 4237672 4237673 rs6687719 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 749.000000,4259.000000, 0.149561,0.850439, maf-5-some-pop 617 chr1 4237877 4237878 rs12032955 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4777.000000,231.000000, 0.953874,0.046126, maf-5-some-pop 617 chr1 4237983 4237984 rs12030172 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 G,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 617 chr1 4238027 4238028 rs6683284 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,C, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop 617 chr1 4238037 4238038 rs12032975 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4778.000000,230.000000, 0.954073,0.045927, maf-5-some-pop 617 chr1 4238081 4238082 rs4654415 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1094.000000,3914.000000, 0.218450,0.781550, maf-5-some-pop,maf-5-all-pops 617 chr1 4238103 4238104 rs4654416 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3914.000000,1094.000000, 0.781550,0.218450, maf-5-some-pop,maf-5-all-pops 617 chr1 4238110 4238111 rs6673617 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, 617 chr1 4238263 4238264 rs4654417 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1095.000000,3913.000000, 0.218650,0.781350, 617 chr1 4238332 4238333 rs141294057 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 617 chr1 4238471 4238472 rs34230456 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop,maf-5-all-pops 617 chr1 4238649 4238650 rs55641642 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 1081.000000,3927.000000, 0.215855,0.784145, maf-5-some-pop 617 chr1 4238678 4238679 rs10915465 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2555.000000,2453.000000, 0.510184,0.489816, maf-5-some-pop,maf-5-all-pops 617 chr1 4239027 4239028 rs4654418 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1019.000000,3989.000000, 0.203474,0.796526, maf-5-some-pop,maf-5-all-pops 617 chr1 4239455 4239455 rs35859581 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 11 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 1094.000000,3914.000000, 0.218450,0.781550, 617 chr1 4239513 4239514 rs12034806 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop,maf-5-all-pops 617 chr1 4240177 4240178 rs4233264 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3917.000000,1091.000000, 0.782149,0.217851, maf-5-some-pop,maf-5-all-pops 617 chr1 4240426 4240427 rs4654502 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1092.000000,3916.000000, 0.218051,0.781949, maf-5-some-pop,maf-5-all-pops 617 chr1 4240496 4240497 rs4654503 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1089.000000,3919.000000, 0.217452,0.782548, maf-5-some-pop,maf-5-all-pops 617 chr1 4240744 4240745 rs75301212 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 617 chr1 4240860 4240861 rs12074230 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3782.000000,1226.000000, 0.755192,0.244808, maf-5-some-pop,maf-5-all-pops 617 chr1 4241086 4241087 rs112449630 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 416.000000,4592.000000, 0.083067,0.916933, 617 chr1 4241353 4241354 rs61770887 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI, 2 A,T, 4224.000000,784.000000, 0.843450,0.156550, maf-5-some-pop,maf-5-all-pops 617 chr1 4241356 4241356 rs201506450 0 + - - -/AAAG genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,GMI,LUNTER, 2 -,AAAG, 790.000000,4218.000000, 0.157748,0.842252, 617 chr1 4241878 4241879 rs6696749 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1082.000000,3926.000000, 0.216054,0.783946, 617 chr1 4242108 4242109 rs72852660 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4759.000000,249.000000, 0.950280,0.049720, maf-5-some-pop,maf-5-all-pops 617 chr1 4242114 4242115 rs114188988 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 617 chr1 4242628 4242629 rs4518866 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1048.000000,3960.000000, 0.209265,0.790735, 617 chr1 4242704 4242705 rs6690448 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 A,G, 312.000000,4696.000000, 0.062300,0.937700, 617 chr1 4243240 4243241 rs12081294 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 A,C, 312.000000,4696.000000, 0.062300,0.937700, 617 chr1 4243247 4243248 rs7544125 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 4220.000000,788.000000, 0.842652,0.157348, 617 chr1 4243249 4243250 rs7515133 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 4220.000000,788.000000, 0.842652,0.157348, 617 chr1 4243322 4243323 rs4408123 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 617 chr1 4243417 4243418 rs7555382 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3988.000000,1020.000000, 0.796326,0.203674, 617 chr1 4243669 4243670 rs147634114 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 171.000000,4837.000000, 0.034145,0.965855, 617 chr1 4243707 4243708 rs12136109 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,T, 4778.000000,230.000000, 0.954073,0.045927, 617 chr1 4243804 4243805 rs4654505 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 785.000000,4223.000000, 0.156749,0.843251, 617 chr1 4244449 4244450 rs145173028 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 617 chr1 4244682 4244683 rs149853979 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,A, 1055.000000,3953.000000, 0.210663,0.789337, 617 chr1 4244747 4244748 rs377342972 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, 617 chr1 4244856 4244857 rs4654419 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 1355.000000,3653.000000, 0.270567,0.729433, maf-5-some-pop,maf-5-all-pops 617 chr1 4245038 4245039 rs4654506 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 766.000000,4242.000000, 0.152955,0.847045, maf-5-some-pop,maf-5-all-pops 617 chr1 4245173 4245174 rs4654420 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4246.000000,762.000000, 0.847843,0.152157, 617 chr1 4245433 4245434 rs144463966 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 59.000000,4949.000000, 0.011781,0.988219, 617 chr1 4245679 4245680 rs11484694 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,PJP,SC_SNP, 2 A,C, 232.000000,4776.000000, 0.046326,0.953674, 617 chr1 4245998 4245999 rs61770889 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 1058.000000,3950.000000, 0.211262,0.788738, maf-5-some-pop,maf-5-all-pops 617 chr1 4246002 4246003 rs61770890 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 3951.000000,1057.000000, 0.788938,0.211062, maf-5-some-pop,maf-5-all-pops 617 chr1 4246025 4246026 rs61461184 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,HGSV, 2 A,G, 236.000000,4772.000000, 0.047125,0.952875, 617 chr1 4246029 4246030 rs144931628 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 617 chr1 4246318 4246319 rs4354511 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BUSHMAN,EVA-GONL,GMI,HGSV,PJP,SC_JCM,SSMP, 2 A,G, 4633.000000,375.000000, 0.925120,0.074880, 617 chr1 4246324 4246325 rs61770891 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF, 2 G,T, 1497.000000,3511.000000, 0.298922,0.701078, 617 chr1 4246345 4246346 rs139037368 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4757.000000,251.000000, 0.949880,0.050120, 617 chr1 4246376 4246377 rs554527628 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4774.000000,234.000000, 0.953275,0.046725, 617 chr1 4246377 4246378 rs56203769 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,HGSV,SSMP, 2 C,T, 1533.000000,3475.000000, 0.306110,0.693890, 617 chr1 4246379 4246380 rs540921104 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 234.000000,4774.000000, 0.046725,0.953275, 617 chr1 4246387 4246388 rs55674531 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,SSMP, 2 C,T, 1613.000000,3395.000000, 0.322085,0.677915, 617 chr1 4246417 4246418 rs35969529 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 A,C, 3201.000000,1807.000000, 0.639177,0.360823, 617 chr1 4246454 4246455 rs34096100 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 1174.000000,3834.000000, 0.234425,0.765575, 617 chr1 4246496 4246497 rs114381498 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 617 chr1 4246676 4246677 rs140641950 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4694.000000,314.000000, 0.937300,0.062700, 617 chr1 4246828 4246829 rs60526833 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 1940.000000,3068.000000, 0.387380,0.612620, 617 chr1 4246948 4246949 rs144581808 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4940.000000,68.000000, 0.986422,0.013578, 617 chr1 4247092 4247093 rs4654421 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 4132.000000,876.000000, 0.825080,0.174920, 617 chr1 4247152 4247153 rs4654422 0 + T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2666.000000,2342.000000, 0.532348,0.467652, maf-5-some-pop,maf-5-all-pops 617 chr1 4247870 4247871 rs112629055 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 4875.000000,133.000000, 0.973442,0.026557, 617 chr1 4247912 4247913 rs111990953 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 617 chr1 4248045 4248046 rs114560458 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, 617 chr1 4248063 4248064 rs115302896 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, 617 chr1 4248462 4248463 rs35837871 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,T, 3777.000000,1231.000000, 0.754193,0.245807, maf-5-some-pop,maf-5-all-pops 617 chr1 4248573 4248573 rs568468597 0 + - - -/T/TT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 3 -,T,TT, 3519.000000,361.000000,1128.000000, 0.702675,0.072085,0.225240, 617 chr1 4248617 4248619 rs141678059 0 + GT GT -/GT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GT, 267.000000,4741.000000, 0.053315,0.946685, 617 chr1 4248695 4248696 rs10753370 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 304.000000,4704.000000, 0.060703,0.939297, 617 chr1 4249150 4249151 rs12084286 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3510.000000,1498.000000, 0.700879,0.299121, maf-5-some-pop,maf-5-all-pops 617 chr1 4249310 4249311 rs10915466 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 4741.000000,267.000000, 0.946685,0.053315, maf-5-some-pop,maf-5-all-pops 617 chr1 4249459 4249460 rs10733015 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4810.000000,198.000000, 0.960463,0.039537, maf-5-some-pop 617 chr1 4249770 4249771 rs58005270 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 G,T, 4781.000000,227.000000, 0.954673,0.045327, maf-5-some-pop,maf-5-all-pops 617 chr1 4249806 4249807 rs114552984 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 617 chr1 4250062 4250063 rs4654507 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1232.000000,3776.000000, 0.246006,0.753994, maf-5-some-pop,maf-5-all-pops 617 chr1 4250486 4250487 rs72852685 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,T, 225.000000,4783.000000, 0.044928,0.955072, maf-5-some-pop,maf-5-all-pops 617 chr1 4250601 4250602 rs72852686 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, 617 chr1 4251397 4251398 rs35392680 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1229.000000,3779.000000, 0.245407,0.754593, maf-5-some-pop,maf-5-all-pops 617 chr1 4251625 4251626 rs35452955 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,T, 3777.000000,1231.000000, 0.754193,0.245807, maf-5-some-pop,maf-5-all-pops 617 chr1 4251807 4251808 rs6703301 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 306.000000,4702.000000, 0.061102,0.938898, maf-5-some-pop 617 chr1 4252120 4252121 rs34414875 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3778.000000,1230.000000, 0.754393,0.245607, maf-5-some-pop,maf-5-all-pops 617 chr1 4252864 4252865 rs12408691 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,G, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 617 chr1 4252993 4252994 rs10915467 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3379.000000,1629.000000, 0.674720,0.325280, maf-5-some-pop,maf-5-all-pops 617 chr1 4253227 4253228 rs72852692 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,maf-5-all-pops 617 chr1 4253297 4253298 rs12722935 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3572.000000,1436.000000, 0.713259,0.286741, maf-5-some-pop,maf-5-all-pops 617 chr1 4253304 4253305 rs113372667 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 617 chr1 4253342 4253343 rs55974255 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 790.000000,4218.000000, 0.157748,0.842252, maf-5-some-pop,maf-5-all-pops 617 chr1 4253459 4253460 rs66798325 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,HUMANGENOME_JCVI,SSMP, 2 -,T, 1697.000000,3311.000000, 0.338858,0.661142, 617 chr1 4253546 4253547 rs112682257 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 617 chr1 4253808 4253809 rs12092627 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1293.000000,3715.000000, 0.258187,0.741813, maf-5-some-pop,maf-5-all-pops 617 chr1 4253811 4253812 rs6679104 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4682.000000,326.000000, 0.934904,0.065096, maf-5-some-pop 617 chr1 4253890 4253891 rs12750830 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1466.000000,3542.000000, 0.292732,0.707268, maf-5-some-pop,maf-5-all-pops 617 chr1 4253974 4253975 rs12740143 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1177.000000,3831.000000, 0.235024,0.764976, maf-5-some-pop,maf-5-all-pops 617 chr1 4254459 4254460 rs74847882 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 617 chr1 4254481 4254482 rs72852694 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop,maf-5-all-pops 617 chr1 4254682 4254683 rs12143082 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1509.000000,3499.000000, 0.301318,0.698682, maf-5-some-pop,maf-5-all-pops 617 chr1 4254967 4254968 rs4578184 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop 617 chr1 4255552 4255553 rs12092079 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 C,T, 4715.000000,293.000000, 0.941494,0.058506, maf-5-some-pop,maf-5-all-pops 617 chr1 4255682 4255683 rs12088215 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 179.000000,4829.000000, 0.035743,0.964257, maf-5-some-pop,maf-5-all-pops 617 chr1 4255942 4255943 rs12092271 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,SC_SNP, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 617 chr1 4256581 4256582 rs117312359 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 617 chr1 4257143 4257144 rs12086215 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4774.000000,234.000000, 0.953275,0.046725, maf-5-some-pop,maf-5-all-pops 617 chr1 4257335 4257336 rs4276878 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2487.000000,2521.000000, 0.496605,0.503395, maf-5-some-pop,maf-5-all-pops 617 chr1 4257364 4257365 rs71640913 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,G, 4700.000000,308.000000, 0.938498,0.061502, maf-5-some-pop,maf-5-all-pops 617 chr1 4257862 4257863 rs60881479 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 C,T, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop,maf-5-all-pops 617 chr1 4258316 4258316 rs61115653 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BGI,BILGI_BIOE,GMI,LUNTER,PJP,SSMP, 2 -,A, 3626.000000,1382.000000, 0.724042,0.275958, 617 chr1 4258616 4258617 rs12088845 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop,maf-5-all-pops 617 chr1 4258721 4258722 rs112188445 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4955.000000,53.000000, 0.989417,0.010583, 617 chr1 4259184 4259185 rs12092368 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop 617 chr1 4259252 4259253 rs12140941 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,C, 4708.000000,300.000000, 0.940096,0.059904, maf-5-some-pop,maf-5-all-pops 617 chr1 4259605 4259606 rs114258884 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 617 chr1 4259961 4259962 rs34626829 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,T, 1162.000000,3846.000000, 0.232029,0.767971, maf-5-some-pop,maf-5-all-pops 617 chr1 4260044 4260045 rs4654509 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 617 chr1 4260417 4260418 rs6667065 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1510.000000,3498.000000, 0.301518,0.698482, maf-5-some-pop,maf-5-all-pops 617 chr1 4260551 4260552 rs12091653 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,SC_SNP, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, 617 chr1 4260626 4260627 rs6426401 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop 617 chr1 4260993 4260993 rs148781199 0 + - - -/GT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BILGI_BIOE,LUNTER, 2 -,GT, 1427.000000,3581.000000, 0.284944,0.715056, 617 chr1 4261098 4261099 rs112064373 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 4955.000000,53.000000, 0.989417,0.010583, 617 chr1 4262090 4262091 rs76084373 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop,maf-5-all-pops 617 chr1 4262268 4262269 rs72853405 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 G,T, 4829.000000,179.000000, 0.964257,0.035743, maf-5-some-pop,maf-5-all-pops 617 chr1 4262452 4262453 rs113485362 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 51.000000,4957.000000, 0.010184,0.989816, 617 chr1 4262761 4262762 rs115407071 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, 617 chr1 4263518 4263519 rs10158783 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WUGSC_SSAHASNP, 2 A,G, 270.000000,4738.000000, 0.053914,0.946086, maf-5-some-pop 617 chr1 4263619 4263620 rs35439066 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 2025.000000,2983.000000, 0.404353,0.595647, 617 chr1 4263676 4263677 rs6687268 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3734.000000,1274.000000, 0.745607,0.254393, maf-5-some-pop,maf-5-all-pops 617 chr1 4263982 4263983 rs4654511 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3140.000000,1868.000000, 0.626997,0.373003, maf-5-some-pop,maf-5-all-pops 617 chr1 4263996 4263997 rs4654512 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 3139.000000,1869.000000, 0.626797,0.373203, maf-5-some-pop,maf-5-all-pops 617 chr1 4264483 4264484 rs4529679 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2139.000000,2869.000000, 0.427117,0.572883, maf-5-some-pop,maf-5-all-pops 617 chr1 4267088 4267089 rs16840901 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 1120.000000,3888.000000, 0.223642,0.776358, maf-5-some-pop 617 chr1 4268250 4268251 rs35122589 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 3832.000000,1176.000000, 0.765176,0.234824, maf-5-some-pop,maf-5-all-pops 617 chr1 4268341 4268342 rs12090408 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop,maf-5-all-pops 617 chr1 4268352 4268353 rs74615162 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 617 chr1 4268525 4268526 rs78976068 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 160.000000,4848.000000, 0.031949,0.968051, maf-5-some-pop 617 chr1 4268552 4268552 rs75051203 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,BGI,BILGI_BIOE,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 3725.000000,1283.000000, 0.743810,0.256190, 617 chr1 4268593 4268594 rs12095632 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2400.000000,2608.000000, 0.479233,0.520767, maf-5-some-pop,maf-5-all-pops 617 chr1 4268959 4268960 rs34681506 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 4717.000000,291.000000, 0.941893,0.058107, maf-5-some-pop,maf-5-all-pops 617 chr1 4269173 4269174 rs35225148 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop 617 chr1 4269490 4269491 rs6426402 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 2351.000000,2657.000000, 0.469449,0.530551, maf-5-some-pop,maf-5-all-pops 617 chr1 4269533 4269534 rs6426403 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2348.000000,2660.000000, 0.468850,0.531150, maf-5-some-pop,maf-5-all-pops 617 chr1 4269637 4269638 rs6426404 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2773.000000,2235.000000, 0.553714,0.446286, maf-5-some-pop,maf-5-all-pops 617 chr1 4269638 4269638 rs567086010 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,T, 4922.000000,86.000000, 0.982827,0.017173, 617 chr1 4269674 4269675 rs116109897 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,C, 51.000000,4957.000000, 0.010184,0.989816, 617 chr1 4269797 4269798 rs60017975 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3499.000000,1509.000000, 0.698682,0.301318, maf-5-some-pop,maf-5-all-pops 617 chr1 4270024 4270025 rs111623806 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 105.000000,4903.000000, 0.020967,0.979034, 617 chr1 4270134 4270135 rs114049972 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4912.000000,96.000000, 0.980831,0.019169, 617 chr1 4270625 4270626 rs150484613 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 617 chr1 4270705 4270706 rs143001395 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 617 chr1 4271020 4271021 rs7550659 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop 617 chr1 4271274 4271275 rs10799212 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, 617 chr1 4271298 4271299 rs189576680 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, 617 chr1 4271321 4271322 rs12410442 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,SSMP, 2 A,G, 1144.000000,3864.000000, 0.228435,0.771565, 617 chr1 4271582 4271583 rs10799214 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 2921.000000,2087.000000, 0.583267,0.416733, maf-5-some-pop,maf-5-all-pops 617 chr1 4271708 4271709 rs148513482 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 617 chr1 4271826 4271827 rs142745458 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 617 chr1 4271972 4271973 rs7553919 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 220.000000,4788.000000, 0.043930,0.956070, maf-5-some-pop 617 chr1 4271975 4271976 rs10915472 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 272.000000,4736.000000, 0.054313,0.945687, maf-5-some-pop,maf-5-all-pops 617 chr1 4272030 4272030 rs148797081 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 4949.000000,59.000000, 0.988219,0.011781, 617 chr1 4272129 4272130 rs7554028 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 599.000000,4409.000000, 0.119609,0.880391, maf-5-some-pop 617 chr1 4272484 4272485 rs116083257 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 617 chr1 4272887 4272888 rs145488946 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,C, 4923.000000,85.000000, 0.983027,0.016973, 617 chr1 4273349 4273350 rs112433438 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop,maf-5-all-pops 617 chr1 4273651 4273652 rs7517572 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4615.000000,393.000000, 0.921526,0.078474, maf-5-some-pop 617 chr1 4273841 4273842 rs10753372 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1534.000000,3474.000000, 0.306310,0.693690, maf-5-some-pop,maf-5-all-pops 617 chr1 4273961 4273962 rs10737404 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4615.000000,393.000000, 0.921526,0.078474, maf-5-some-pop 617 chr1 4274068 4274069 rs11800802 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop 617 chr1 4274070 4274071 rs111910972 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 617 chr1 4274151 4274163 rs199807059 0 + CTTCCTTCCTTT CTTCCTTCCTTT -/CTTCCTTCCTTT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,CTTCCTTCCTTT, 2802.000000,2206.000000, 0.559505,0.440495, 617 chr1 4274184 4274185 rs10915473 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,SC_SNP,SSMP, 2 C,T, 443.000000,4565.000000, 0.088458,0.911542, 617 chr1 4274196 4274197 rs148518070 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,EVA-GONL,GMI, 2 C,T, 339.000000,4669.000000, 0.067692,0.932308, 617 chr1 4274199 4274200 rs144791154 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,GMI,SSMP, 2 A,C, 0.000000,5008.000000, 0.000000,1.000000, 617 chr1 4274521 4274522 rs1908491 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 378.000000,4630.000000, 0.075479,0.924521, 617 chr1 4274649 4274650 rs10915475 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,SC_SNP,TISHKOFF, 2 A,G, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop,maf-5-all-pops 617 chr1 4274736 4274737 rs1908493 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 396.000000,4612.000000, 0.079073,0.920927, maf-5-some-pop 617 chr1 4275113 4275114 rs11578399 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 323.000000,4685.000000, 0.064497,0.935503, maf-5-some-pop,maf-5-all-pops 617 chr1 4275171 4275172 rs1495246 0 + C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 399.000000,4609.000000, 0.079673,0.920327, maf-5-some-pop 617 chr1 4275290 4275291 rs10915476 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2656.000000,2352.000000, 0.530351,0.469649, maf-5-some-pop,maf-5-all-pops 617 chr1 4275418 4275419 rs1495247 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop 617 chr1 4275441 4275442 rs7411802 0 + C C A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4630.000000,378.000000, 0.924521,0.075479, maf-5-some-pop 617 chr1 4275505 4275506 rs535688144 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 104.000000,4904.000000, 0.020767,0.979233, 617 chr1 4275537 4275538 rs72853433 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 617 chr1 4275715 4275716 rs4326593 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2631.000000,2377.000000, 0.525359,0.474641, maf-5-some-pop,maf-5-all-pops 617 chr1 4275723 4275724 rs36044140 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,EVA-GONL,GMI,ILLUMINA,SSMP, 2 A,G, 278.000000,4730.000000, 0.055511,0.944489, maf-5-some-pop,maf-5-all-pops 617 chr1 4275875 4275876 rs4615813 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4554.000000,454.000000, 0.909345,0.090655, maf-5-some-pop 617 chr1 4275946 4275947 rs28600106 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3481.000000,1527.000000, 0.695088,0.304912, maf-5-some-pop,maf-5-all-pops 617 chr1 4276083 4276084 rs2898790 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4518.000000,490.000000, 0.902157,0.097843, maf-5-some-pop 617 chr1 4276192 4276193 rs2411737 0 + G G C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4520.000000,488.000000, 0.902556,0.097444, maf-5-some-pop 617 chr1 4276260 4276261 rs28627989 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 A,C, 4741.000000,267.000000, 0.946685,0.053315, maf-5-some-pop,maf-5-all-pops 617 chr1 4276263 4276264 rs112627861 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4952.000000,56.000000, 0.988818,0.011182, maf-5-some-pop,maf-5-all-pops 617 chr1 4276338 4276339 rs561453488 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 617 chr1 4276511 4276511 rs3058077 0 + - - -/GGGCT genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,LUNTER,TISHKOFF, 2 -,GGGCT, 503.000000,4505.000000, 0.100439,0.899561, 617 chr1 4276837 4276838 rs10915477 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4234.000000,774.000000, 0.845447,0.154553, maf-5-some-pop 617 chr1 4276887 4276888 rs12060660 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 757.000000,4251.000000, 0.151158,0.848842, maf-5-some-pop 617 chr1 4276902 4276903 rs10915478 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4252.000000,756.000000, 0.849042,0.150958, maf-5-some-pop 617 chr1 4276933 4276934 rs12060664 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 756.000000,4252.000000, 0.150958,0.849042, maf-5-some-pop 617 chr1 4277601 4277602 rs34834583 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,G, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop,maf-5-all-pops 617 chr1 4277762 4277763 rs72853444 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop 617 chr1 4277934 4277935 rs4654423 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4223.000000,785.000000, 0.843251,0.156749, maf-5-some-pop 617 chr1 4277947 4277948 rs10915479 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2714.000000,2294.000000, 0.541933,0.458067, maf-5-some-pop,maf-5-all-pops 617 chr1 4278099 4278100 rs117135038 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 617 chr1 4278330 4278331 rs4654513 0 + C C A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3315.000000,1693.000000, 0.661941,0.338059, maf-5-some-pop,maf-5-all-pops 617 chr1 4278797 4278798 rs4654514 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3827.000000,1181.000000, 0.764177,0.235823, maf-5-some-pop 617 chr1 4278936 4278937 rs12119560 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 4725.000000,283.000000, 0.943490,0.056510, maf-5-some-pop,maf-5-all-pops 617 chr1 4279045 4279046 rs574391597 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 92.000000,4916.000000, 0.018371,0.981629, 617 chr1 4279165 4279166 rs35361976 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2191.000000,2817.000000, 0.437500,0.562500, maf-5-some-pop,maf-5-all-pops 617 chr1 4279185 4279186 rs12116719 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1213.000000,3795.000000, 0.242212,0.757788, maf-5-some-pop,maf-5-all-pops 617 chr1 4279357 4279358 rs116074616 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, maf-5-some-pop,maf-5-all-pops 617 chr1 4279561 4279562 rs59176411 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3822.000000,1186.000000, 0.763179,0.236821, 617 chr1 4279624 4279625 rs10737405 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 271.000000,4737.000000, 0.054113,0.945887, 617 chr1 4280169 4280170 rs6657617 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 3823.000000,1185.000000, 0.763379,0.236621, maf-5-some-pop,maf-5-all-pops 617 chr1 4280188 4280189 rs59183226 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop,maf-5-all-pops 617 chr1 4280220 4280221 rs6426405 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4728.000000,280.000000, 0.944089,0.055911, maf-5-some-pop 617 chr1 4280629 4280630 rs4592237 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4775.000000,233.000000, 0.953474,0.046526, maf-5-some-pop 617 chr1 4281457 4281458 rs4654424 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3782.000000,1226.000000, 0.755192,0.244808, maf-5-some-pop 617 chr1 4281809 4281810 rs4233265 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4740.000000,268.000000, 0.946486,0.053514, maf-5-some-pop 617 chr1 4281952 4281953 rs116279457 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4920.000000,88.000000, 0.982428,0.017572, 617 chr1 4282298 4282299 rs4654425 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 617 chr1 4282492 4282493 rs74401837 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 617 chr1 4282999 4283000 rs12120815 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 264.000000,4744.000000, 0.052716,0.947284, maf-5-some-pop 617 chr1 4283304 4283305 rs75327009 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 617 chr1 4283442 4283443 rs77070138 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 617 chr1 4283444 4283445 rs79207687 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 617 chr1 4283724 4283725 rs71640914 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 617 chr1 4283857 4283858 rs870143 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop 617 chr1 4284023 4284024 rs1809801 0 - G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 617 chr1 4284487 4284488 rs55978003 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 617 chr1 4284918 4284919 rs7528938 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2432.000000,2576.000000, 0.485623,0.514377, maf-5-some-pop,maf-5-all-pops 617 chr1 4285425 4285426 rs17415519 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3864.000000,1144.000000, 0.771565,0.228435, maf-5-some-pop 617 chr1 4285431 4285432 rs4654515 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3798.000000,1210.000000, 0.758387,0.241613, maf-5-some-pop 617 chr1 4285466 4285466 rs71580256 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,BILGI_BIOE,BUSHMAN,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 2407.000000,2601.000000, 0.480631,0.519369, 617 chr1 4285602 4285603 rs115072632 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 58.000000,4950.000000, 0.011582,0.988419, 617 chr1 4285696 4285697 rs4654516 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3063.000000,1945.000000, 0.611621,0.388379, maf-5-some-pop,maf-5-all-pops 617 chr1 4286035 4286036 rs16840960 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 617 chr1 4286155 4286156 rs11804897 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,JMKIDD_LAB,TISHKOFF, 2 C,T, 154.000000,4854.000000, 0.030751,0.969249, maf-5-some-pop 617 chr1 4286228 4286228 rs34672437 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,ABI, 2 -,T, 4710.000000,298.000000, 0.940495,0.059505, 617 chr1 4286386 4286387 rs12563227 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 3950.000000,1058.000000, 0.788738,0.211262, maf-5-some-pop,maf-5-all-pops 617 chr1 4286818 4286819 rs7518160 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop 617 chr1 4287391 4287392 rs112629950 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, 617 chr1 4287405 4287406 rs114507926 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 G,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 617 chr1 4287413 4287414 rs56907791 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop,maf-5-all-pops 617 chr1 4287520 4287521 rs115917038 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4876.000000,132.000000, 0.973642,0.026358, 617 chr1 4287935 4287936 rs79934867 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 76.000000,4932.000000, 0.015176,0.984824, 617 chr1 4288404 4288405 rs116060342 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4853.000000,155.000000, 0.969050,0.030950, 617 chr1 4288493 4288494 rs56149320 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4358.000000,650.000000, 0.870208,0.129792, maf-5-some-pop,maf-5-all-pops 617 chr1 4288519 4288520 rs60781159 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,SSMP,TISHKOFF, 2 C,T, 654.000000,4354.000000, 0.130591,0.869409, maf-5-some-pop,maf-5-all-pops 617 chr1 4288759 4288760 rs77610017 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,G, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop,maf-5-all-pops 617 chr1 4288800 4288801 rs114725696 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 79.000000,4929.000000, 0.015775,0.984225, 617 chr1 4289044 4289045 rs10753374 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 880.000000,4128.000000, 0.175719,0.824281, maf-5-some-pop 617 chr1 4289721 4289722 rs10799217 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1497.000000,3511.000000, 0.298922,0.701078, maf-5-some-pop,maf-5-all-pops 617 chr1 4289898 4289899 rs10799218 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3472.000000,1536.000000, 0.693291,0.306709, maf-5-some-pop,maf-5-all-pops 617 chr1 4289934 4289935 rs71640915 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop,maf-5-all-pops 617 chr1 4291145 4291146 rs12067495 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3843.000000,1165.000000, 0.767372,0.232628, maf-5-some-pop 617 chr1 4291286 4291287 rs16840968 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 682.000000,4326.000000, 0.136182,0.863818, maf-5-some-pop 617 chr1 4291952 4291953 rs7534461 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2789.000000,2219.000000, 0.556909,0.443091, maf-5-some-pop,maf-5-all-pops 617 chr1 4292031 4292032 rs78263258 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 181.000000,4827.000000, 0.036142,0.963858, maf-5-some-pop,maf-5-all-pops 617 chr1 4292124 4292125 rs10799219 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3403.000000,1605.000000, 0.679513,0.320487, maf-5-some-pop,maf-5-all-pops 617 chr1 4292203 4292204 rs77767311 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 195.000000,4813.000000, 0.038938,0.961062, 617 chr1 4292357 4292358 rs10159168 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 1613.000000,3395.000000, 0.322085,0.677915, maf-5-some-pop,maf-5-all-pops 617 chr1 4292798 4292799 rs10158644 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 454.000000,4554.000000, 0.090655,0.909345, maf-5-some-pop 617 chr1 4292977 4292978 rs137998556 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4934.000000,74.000000, 0.985224,0.014776, 617 chr1 4293275 4293276 rs16840975 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4595.000000,413.000000, 0.917532,0.082468, maf-5-some-pop 617 chr1 4293415 4293416 rs115690063 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4916.000000,92.000000, 0.981629,0.018371, 617 chr1 4293703 4293704 rs114234730 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, 617 chr1 4293999 4294000 rs4512614 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 A,G, 4342.000000,666.000000, 0.867013,0.132987, maf-5-some-pop 617 chr1 4294191 4294192 rs74049095 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 617 chr1 4294962 4294963 rs12073151 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 400.000000,4608.000000, 0.079872,0.920128, maf-5-some-pop 617 chr1 4295000 4295001 rs10915482 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3450.000000,1558.000000, 0.688898,0.311102, maf-5-some-pop 617 chr1 4295153 4295154 rs72853475 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 309.000000,4699.000000, 0.061701,0.938299, maf-5-some-pop,maf-5-all-pops 617 chr1 4295368 4295370 rs201229383 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CT, 75.000000,4933.000000, 0.014976,0.985024, 617 chr1 4295815 4295816 rs77648095 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4560.000000,448.000000, 0.910543,0.089457, maf-5-some-pop,maf-5-all-pops 617 chr1 4295818 4295819 rs77838664 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop,maf-5-all-pops 617 chr1 4295916 4295917 rs58942532 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 617 chr1 4296018 4296019 rs116532451 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 64.000000,4944.000000, 0.012780,0.987220, 617 chr1 4296668 4296669 rs71640916 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 240.000000,4768.000000, 0.047923,0.952077, maf-5-some-pop 617 chr1 4296800 4296801 rs74049102 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,T, 91.000000,4917.000000, 0.018171,0.981829, 617 chr1 4296928 4296929 rs77642065 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop,maf-5-all-pops 617 chr1 4297500 4297501 rs16840985 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,G, 4665.000000,343.000000, 0.931510,0.068490, maf-5-some-pop,maf-5-all-pops 617 chr1 4297548 4297549 rs17259619 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 G,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 617 chr1 4297739 4297740 rs58853065 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 617 chr1 4298035 4298036 rs72631044 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 617 chr1 4298308 4298323 rs148578145 0 + CCATTTACATCCCAC CCATTTACATCCCAC -/CCATTTACATCCCAC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER, 2 -,CCATTTACATCCCAC, 660.000000,4348.000000, 0.131789,0.868211, 617 chr1 4298583 4298584 rs7514820 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,G, 661.000000,4347.000000, 0.131989,0.868011, maf-5-some-pop,maf-5-all-pops 617 chr1 4298948 4298949 rs114335995 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4935.000000,73.000000, 0.985423,0.014577, 617 chr1 4299076 4299076 rs34484715 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,ABI, 2 -,T, 3160.000000,1848.000000, 0.630990,0.369010, 617 chr1 4299264 4299265 rs12064184 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 G,T, 4890.000000,118.000000, 0.976438,0.023562, 617 chr1 4299295 4299296 rs113980561 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4715.000000,293.000000, 0.941494,0.058506, maf-5-some-pop 617 chr1 4299330 4299331 rs12124378 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3216.000000,1792.000000, 0.642173,0.357827, maf-5-some-pop,maf-5-all-pops 617 chr1 4299531 4299532 rs12071517 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,T, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop,maf-5-all-pops 617 chr1 4300146 4300147 rs72631046 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 617 chr1 4300157 4300158 rs11580697 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 617 chr1 4300296 4300297 rs12065720 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, 617 chr1 4300304 4300305 rs6426407 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1547.000000,3461.000000, 0.308906,0.691094, maf-5-some-pop,maf-5-all-pops 617 chr1 4300805 4300806 rs6426408 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4296.000000,712.000000, 0.857827,0.142173, maf-5-some-pop,maf-5-all-pops 617 chr1 4301206 4301206 rs202150586 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 4836.000000,172.000000, 0.965655,0.034345, 617 chr1 4301353 4301354 rs7535363 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3859.000000,1149.000000, 0.770567,0.229433, maf-5-some-pop,maf-5-all-pops 617 chr1 4301511 4301512 rs7540505 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,WI_SSAHASNP, 2 C,T, 341.000000,4667.000000, 0.068091,0.931909, maf-5-some-pop,maf-5-all-pops 617 chr1 4302160 4302161 rs12124548 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop 617 chr1 4302525 4302526 rs116788450 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, 617 chr1 4302584 4302585 rs12405770 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3247.000000,1761.000000, 0.648363,0.351637, maf-5-some-pop 617 chr1 4302613 4302614 rs6426409 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3968.000000,1040.000000, 0.792332,0.207668, maf-5-some-pop 617 chr1 4302864 4302865 rs76969179 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB, 2 A,T, 4953.000000,55.000000, 0.989018,0.010982, 617 chr1 4303338 4303339 rs74814068 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,SSMP, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 617 chr1 4303377 4303378 rs72853485 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,C, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 617 chr1 4304255 4304256 rs76247831 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,G, 241.000000,4767.000000, 0.048123,0.951877, maf-5-some-pop,maf-5-all-pops 617 chr1 4304429 4304430 rs568845320 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 137.000000,4871.000000, 0.027356,0.972644, 617 chr1 4304449 4304452 rs369802342 0 + TTA TTA -/TTA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,SSIP, 2 -,TTA, 330.000000,4678.000000, 0.065895,0.934105, 617 chr1 4304452 4304452 rs557787416 0 + - - -/TTA genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TTA, 4913.000000,95.000000, 0.981030,0.018970, 617 chr1 4304496 4304497 rs112123032 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, 617 chr1 4304691 4304692 rs375030875 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 A,G, 763.000000,4245.000000, 0.152356,0.847644, 617 chr1 4304740 4304741 rs569437855 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4863.000000,145.000000, 0.971046,0.028954, 617 chr1 4304860 4304861 rs538078599 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4910.000000,98.000000, 0.980431,0.019569, 617 chr1 4305027 4305028 rs12132080 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,T, 1529.000000,3479.000000, 0.305312,0.694688, 617 chr1 4305115 4305116 rs556449764 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 617 chr1 4305298 4305299 rs186263287 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 117.000000,4891.000000, 0.023363,0.976637, 617 chr1 4305331 4305332 rs12405086 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL, 2 A,G, 804.000000,4204.000000, 0.160543,0.839457, 617 chr1 4305766 4305767 rs550024997 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 811.000000,4197.000000, 0.161941,0.838059, 617 chr1 4305994 4305995 rs570430868 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4866.000000,142.000000, 0.971645,0.028355, 617 chr1 4306126 4306127 rs539492127 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 617 chr1 4306232 4306233 rs12081690 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 134.000000,4874.000000, 0.026757,0.973243, 617 chr1 4306433 4306434 rs151333724 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 88.000000,4920.000000, 0.017572,0.982428, 617 chr1 4306650 4306651 rs138435678 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 117.000000,4891.000000, 0.023363,0.976637, 617 chr1 4306746 4306747 rs142910233 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 191.000000,4817.000000, 0.038139,0.961861, 617 chr1 4307018 4307019 rs138798507 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 117.000000,4891.000000, 0.023363,0.976637, 617 chr1 4307683 4307684 rs78968477 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 617 chr1 4308282 4308283 rs6690300 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1790.000000,3218.000000, 0.357428,0.642572, maf-5-some-pop 617 chr1 4308493 4308494 rs111226363 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 617 chr1 4308527 4308528 rs12239600 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1785.000000,3223.000000, 0.356430,0.643570, maf-5-some-pop 617 chr1 4308846 4308847 rs74052205 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop 617 chr1 4308855 4308856 rs76466674 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 617 chr1 4309033 4309034 rs12078298 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3478.000000,1530.000000, 0.694489,0.305511, maf-5-some-pop,maf-5-all-pops 617 chr1 4309125 4309126 rs115894872 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, maf-5-some-pop,maf-5-all-pops 617 chr1 4309141 4309142 rs80005767 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 617 chr1 4309460 4309461 rs59898058 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,TISHKOFF, 2 G,T, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop,maf-5-all-pops 617 chr1 4309482 4309483 rs78711240 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 617 chr1 4309761 4309762 rs113407223 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop 617 chr1 4309808 4309809 rs12079593 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,maf-5-all-pops 617 chr1 4309952 4309953 rs6679489 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3468.000000,1540.000000, 0.692492,0.307508, maf-5-some-pop,maf-5-all-pops 617 chr1 4310310 4310311 rs72853491 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop,maf-5-all-pops 617 chr1 4310345 4310346 rs10915486 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,C, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,maf-5-all-pops 617 chr1 4310439 4310440 rs77149640 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop,maf-5-all-pops 617 chr1 4310481 4310482 rs72853492 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 617 chr1 4311265 4311266 rs78930902 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 617 chr1 4311434 4311435 rs4654519 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1502.000000,3506.000000, 0.299920,0.700080, maf-5-some-pop,maf-5-all-pops 617 chr1 4311744 4311745 rs113473136 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 313.000000,4695.000000, 0.062500,0.937500, 617 chr1 4311778 4311779 rs138317917 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 617 chr1 4311912 4311913 rs10915487 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3529.000000,1479.000000, 0.704673,0.295327, maf-5-some-pop,maf-5-all-pops 617 chr1 4311922 4311923 rs143786052 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,T, 87.000000,4921.000000, 0.017372,0.982628, 617 chr1 4312147 4312148 rs12082705 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 G,T, 1161.000000,3847.000000, 0.231829,0.768171, maf-5-some-pop,maf-5-all-pops 617 chr1 4312412 4312413 rs75929494 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4940.000000,68.000000, 0.986422,0.013578, 617 chr1 4312424 4312425 rs12082555 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,TISHKOFF, 2 A,C, 4126.000000,882.000000, 0.823882,0.176118, maf-5-some-pop,maf-5-all-pops 617 chr1 4312453 4312454 rs75980376 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 617 chr1 4312526 4312527 rs16841005 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 308.000000,4700.000000, 0.061502,0.938498, maf-5-some-pop 617 chr1 4313165 4313166 rs16841015 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,G, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,maf-5-all-pops 617 chr1 4313302 4313303 rs12741715 0 + A A A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3221.000000,1787.000000, 0.643171,0.356829, maf-5-some-pop,maf-5-all-pops 617 chr1 4313363 4313364 rs74052207 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,SSMP,TISHKOFF, 2 G,T, 247.000000,4761.000000, 0.049321,0.950679, maf-5-some-pop,maf-5-all-pops 617 chr1 4313480 4313480 rs151276379 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,A, 4761.000000,247.000000, 0.950679,0.049321, 617 chr1 4313805 4313806 rs113366752 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 100.000000,4908.000000, 0.019968,0.980032, 617 chr1 4314176 4314177 rs16841022 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,G, 689.000000,4319.000000, 0.137580,0.862420, maf-5-some-pop,maf-5-all-pops 617 chr1 4314347 4314348 rs74052208 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 617 chr1 4314351 4314352 rs12085702 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop,maf-5-all-pops 617 chr1 4314354 4314355 rs12084379 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 617 chr1 4314359 4314360 rs16841032 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop 617 chr1 4315047 4315048 rs7520437 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1161.000000,3847.000000, 0.231829,0.768171, maf-5-some-pop,maf-5-all-pops 617 chr1 4315428 4315429 rs12086930 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop,maf-5-all-pops 617 chr1 4315547 4315548 rs12691488 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 3225.000000,1783.000000, 0.643970,0.356030, maf-5-some-pop,maf-5-all-pops 617 chr1 4315937 4315938 rs17407489 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN, 2 A,G, 182.000000,4826.000000, 0.036342,0.963658, maf-5-some-pop 617 chr1 4316615 4316616 rs74635645 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 617 chr1 4316616 4316617 rs75746603 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 617 chr1 4316883 4316884 rs57134206 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 245.000000,4763.000000, 0.048922,0.951078, maf-5-some-pop,maf-5-all-pops 617 chr1 4317259 4317260 rs112910624 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, 617 chr1 4317698 4317699 rs79577406 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 97.000000,4911.000000, 0.019369,0.980631, 617 chr1 4317770 4317771 rs10753376 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,G, 4010.000000,998.000000, 0.800719,0.199281, maf-5-some-pop,maf-5-all-pops 617 chr1 4317893 4317894 rs10915488 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4822.000000,186.000000, 0.962859,0.037141, 617 chr1 4318096 4318097 rs78447643 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,C, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop 617 chr1 4318110 4318111 rs113401415 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4710.000000,298.000000, 0.940495,0.059505, maf-5-some-pop,maf-5-all-pops 617 chr1 4318266 4318267 rs76404671 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, maf-5-some-pop,maf-5-all-pops 617 chr1 4318725 4318726 rs116594683 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 617 chr1 4318906 4318907 rs113194494 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 617 chr1 4319049 4319050 rs11583756 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1788.000000,3220.000000, 0.357029,0.642971, maf-5-some-pop,maf-5-all-pops 617 chr1 4319246 4319247 rs7545415 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1758.000000,3250.000000, 0.351038,0.648962, maf-5-some-pop 617 chr1 4319403 4319404 rs76704243 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 356.000000,4652.000000, 0.071086,0.928914, maf-5-some-pop 617 chr1 4319863 4319864 rs58803730 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,SSMP,TISHKOFF, 2 C,T, 248.000000,4760.000000, 0.049521,0.950479, maf-5-some-pop,maf-5-all-pops 617 chr1 4319875 4319876 rs72855107 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop,maf-5-all-pops 617 chr1 4320329 4320330 rs77997830 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 311.000000,4697.000000, 0.062101,0.937899, maf-5-some-pop 617 chr1 4320454 4320455 rs145592086 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 54.000000,4954.000000, 0.010783,0.989217, 617 chr1 4321296 4321297 rs151263152 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 58.000000,4950.000000, 0.011582,0.988419, 617 chr1 4321558 4321559 rs12087972 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4737.000000,271.000000, 0.945887,0.054113, maf-5-some-pop,maf-5-all-pops 617 chr1 4321687 4321688 rs1826719 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3500.000000,1508.000000, 0.698882,0.301118, maf-5-some-pop,maf-5-all-pops 617 chr1 4321973 4321974 rs1390137 0 - T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 617 chr1 4322085 4322086 rs16841063 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop 617 chr1 4322822 4322823 rs115149512 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 617 chr1 4322924 4322925 rs113693270 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, 617 chr1 4323101 4323102 rs10799220 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,TISHKOFF, 2 C,T, 4135.000000,873.000000, 0.825679,0.174321, maf-5-some-pop,maf-5-all-pops 617 chr1 4323132 4323133 rs7526339 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1504.000000,3504.000000, 0.300319,0.699681, maf-5-some-pop,maf-5-all-pops 617 chr1 4323171 4323172 rs10915492 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,T, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop,maf-5-all-pops 617 chr1 4323872 4323873 rs11809828 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,TISHKOFF, 2 A,C, 4133.000000,875.000000, 0.825280,0.174720, maf-5-some-pop,maf-5-all-pops 617 chr1 4323923 4323924 rs11810209 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,TISHKOFF, 2 C,T, 1155.000000,3853.000000, 0.230631,0.769369, maf-5-some-pop,maf-5-all-pops 617 chr1 4324243 4324244 rs77734463 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 617 chr1 4324287 4324287 rs551457551 0 + - - -/TG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TG, 3764.000000,1244.000000, 0.751597,0.248403, 617 chr1 4324818 4324819 rs116065565 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 617 chr1 4324989 4324990 rs78188739 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 354.000000,4654.000000, 0.070687,0.929313, maf-5-some-pop 617 chr1 4325030 4325031 rs78168891 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 617 chr1 4325238 4325239 rs77859638 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 824.000000,4184.000000, 0.164537,0.835463, maf-5-some-pop,maf-5-all-pops 618 chr1 4325568 4325569 rs9286981 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3440.000000,1568.000000, 0.686901,0.313099, maf-5-some-pop,maf-5-all-pops 618 chr1 4325588 4325589 rs9286982 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1064.000000,3944.000000, 0.212460,0.787540, maf-5-some-pop 618 chr1 4325823 4325824 rs74049127 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 618 chr1 4326367 4326368 rs2411738 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1756.000000,3252.000000, 0.350639,0.649361, maf-5-some-pop,microattr-tpa 618 chr1 4326951 4326952 rs60570434 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, maf-5-some-pop,maf-5-all-pops 618 chr1 4327049 4327050 rs115356451 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 618 chr1 4327094 4327095 rs111406598 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 618 chr1 4327185 4327186 rs113633712 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,ILLUMINA, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 618 chr1 4327426 4327427 rs59238465 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 C,T, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop,maf-5-all-pops 618 chr1 4327533 4327534 rs74049130 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop,maf-5-all-pops 618 chr1 4327579 4327580 rs79823493 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop,maf-5-all-pops 618 chr1 4327863 4327864 rs10915493 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3509.000000,1499.000000, 0.700679,0.299321, maf-5-some-pop,maf-5-all-pops 618 chr1 4328061 4328062 rs12135176 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 354.000000,4654.000000, 0.070687,0.929313, maf-5-some-pop 618 chr1 4328073 4328074 rs12087250 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,TISHKOFF, 2 C,T, 4140.000000,868.000000, 0.826677,0.173323, maf-5-some-pop,maf-5-all-pops 618 chr1 4328212 4328213 rs57149515 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 686.000000,4322.000000, 0.136981,0.863019, maf-5-some-pop,maf-5-all-pops 618 chr1 4328504 4328505 rs72631050 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 618 chr1 4328577 4328578 rs79971176 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop 618 chr1 4328579 4328580 rs11586171 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1744.000000,3264.000000, 0.348243,0.651757, maf-5-some-pop 618 chr1 4328765 4328766 rs10799221 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2119.000000,2889.000000, 0.423123,0.576877, maf-5-some-pop,maf-5-all-pops 618 chr1 4328951 4328952 rs16838501 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,G, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop,maf-5-all-pops 618 chr1 4329106 4329107 rs76500040 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop,maf-5-all-pops 618 chr1 4329145 4329146 rs12084614 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 A,G, 778.000000,4230.000000, 0.155351,0.844649, maf-5-some-pop,maf-5-all-pops 618 chr1 4329160 4329161 rs77772258 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 618 chr1 4329331 4329332 rs57231644 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 618 chr1 4329844 4329845 rs112412689 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB, 2 G,T, 62.000000,4946.000000, 0.012380,0.987620, 618 chr1 4329893 4329894 rs10799222 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_SNP,SSAHASNP,TISHKOFF, 2 A,T, 4313.000000,695.000000, 0.861222,0.138778, 618 chr1 4330020 4330021 rs10399843 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4837.000000,171.000000, 0.965855,0.034145, maf-5-some-pop,maf-5-all-pops 618 chr1 4330069 4330070 rs10399877 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 416.000000,4592.000000, 0.083067,0.916933, maf-5-some-pop 618 chr1 4330200 4330201 rs17407762 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,G, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop 618 chr1 4330286 4330287 rs6677984 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2540.000000,2468.000000, 0.507188,0.492812, maf-5-some-pop,maf-5-all-pops,microattr-tpa 618 chr1 4330663 4330664 rs76080010 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 193.000000,4815.000000, 0.038538,0.961462, maf-5-some-pop,maf-5-all-pops 618 chr1 4331075 4331076 rs6684221 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 618 chr1 4331174 4331175 rs72631051 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 618 chr1 4331344 4331345 rs79488840 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop 618 chr1 4331374 4331375 rs75215249 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop,maf-5-all-pops 618 chr1 4331745 4331746 rs6679474 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB,TISHKOFF, 2 A,C, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop,maf-5-all-pops 618 chr1 4331828 4331829 rs112581725 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, 618 chr1 4331900 4331901 rs72855135 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 618 chr1 4332014 4332015 rs78362268 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 618 chr1 4332192 4332193 rs74049133 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,G, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 618 chr1 4332475 4332476 rs12745470 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,SSAHASNP, 2 A,C, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 618 chr1 4332601 4332602 rs80251440 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 618 chr1 4332700 4332701 rs566954151 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 99.000000,4909.000000, 0.019768,0.980232, 618 chr1 4332710 4332711 rs12096269 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop 618 chr1 4332729 4332730 rs7527612 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1895.000000,3113.000000, 0.378395,0.621605, maf-5-some-pop,maf-5-all-pops 618 chr1 4333075 4333076 rs76075208 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 4373.000000,635.000000, 0.873203,0.126797, maf-5-some-pop,maf-5-all-pops 618 chr1 4333289 4333290 rs10737406 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1671.000000,3337.000000, 0.333666,0.666334, maf-5-some-pop,maf-5-all-pops 618 chr1 4333504 4333505 rs10737407 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3074.000000,1934.000000, 0.613818,0.386182, maf-5-some-pop,maf-5-all-pops 618 chr1 4333552 4333553 rs75911602 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop,maf-5-all-pops 618 chr1 4333638 4333639 rs76603859 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 G,T, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop,maf-5-all-pops 618 chr1 4333652 4333653 rs116635425 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 105.000000,4903.000000, 0.020967,0.979034, 618 chr1 4333667 4333668 rs10737408 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3176.000000,1832.000000, 0.634185,0.365815, maf-5-some-pop,maf-5-all-pops 618 chr1 4333774 4333775 rs10799223 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3040.000000,1968.000000, 0.607029,0.392971, maf-5-some-pop,maf-5-all-pops 618 chr1 4334398 4334399 rs148886933 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, 618 chr1 4334452 4334453 rs112580663 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 618 chr1 4334497 4334498 rs147595326 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4896.000000,112.000000, 0.977636,0.022364, 618 chr1 4334600 4334601 rs2898791 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3096.000000,1912.000000, 0.618211,0.381789, maf-5-some-pop,maf-5-all-pops 618 chr1 4334975 4334976 rs77159613 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, 618 chr1 4335214 4335215 rs61044860 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 618 chr1 4335365 4335366 rs983915 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF,TSC-CSHL, 2 C,T, 4672.000000,336.000000, 0.932907,0.067093, maf-5-some-pop,maf-5-all-pops 618 chr1 4335449 4335450 rs116099156 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 618 chr1 4335684 4335685 rs77702588 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop 618 chr1 4335886 4335887 rs1495243 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1872.000000,3136.000000, 0.373802,0.626198, maf-5-some-pop,maf-5-all-pops 618 chr1 4335892 4335893 rs903541 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1660.000000,3348.000000, 0.331470,0.668530, maf-5-some-pop,maf-5-all-pops 618 chr1 4335949 4335950 rs16838512 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 4649.000000,359.000000, 0.928315,0.071685, maf-5-some-pop 618 chr1 4336037 4336038 rs112106539 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, maf-5-some-pop,maf-5-all-pops 618 chr1 4336222 4336223 rs76253633 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 138.000000,4870.000000, 0.027556,0.972444, maf-5-some-pop,maf-5-all-pops 618 chr1 4336308 4336308 rs147770562 0 + - - -/TCCTGT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,BILGI_BIOE,LUNTER, 2 -,TCCTGT, 3389.000000,1619.000000, 0.676717,0.323283, 618 chr1 4336354 4336355 rs2411739 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3058.000000,1950.000000, 0.610623,0.389377, maf-5-some-pop,maf-5-all-pops 618 chr1 4336388 4336389 rs12164665 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop,maf-5-all-pops 618 chr1 4336479 4336480 rs12138792 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 G,T, 4470.000000,538.000000, 0.892572,0.107428, maf-5-some-pop,maf-5-all-pops 618 chr1 4336743 4336744 rs57782141 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 391.000000,4617.000000, 0.078075,0.921925, maf-5-some-pop 618 chr1 4336847 4336848 rs57931732 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK, 2 C,G, 4856.000000,152.000000, 0.969649,0.030351, maf-5-some-pop,maf-5-all-pops 618 chr1 4337239 4337240 rs78841492 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 4836.000000,172.000000, 0.965655,0.034345, maf-5-some-pop,maf-5-all-pops 618 chr1 4337290 4337291 rs72855145 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,TISHKOFF, 2 A,T, 4432.000000,576.000000, 0.884984,0.115016, 618 chr1 4337315 4337316 rs80252952 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4501.000000,507.000000, 0.898762,0.101238, maf-5-some-pop 618 chr1 4337515 4337516 rs111454285 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4488.000000,520.000000, 0.896166,0.103834, maf-5-some-pop 618 chr1 4337523 4337524 rs11809455 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 A,G, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop,maf-5-all-pops 618 chr1 4337849 4337850 rs76464765 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, maf-5-some-pop,maf-5-all-pops 618 chr1 4338156 4338157 rs80004190 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 618 chr1 4338225 4338226 rs77237735 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 618 chr1 4338259 4338260 rs78175247 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, maf-5-some-pop,maf-5-all-pops 618 chr1 4338411 4338412 rs74049149 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4474.000000,534.000000, 0.893371,0.106629, maf-5-some-pop,maf-5-all-pops 618 chr1 4338454 4338455 rs75294259 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 618 chr1 4338541 4338542 rs77552729 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4332.000000,676.000000, 0.865016,0.134984, maf-5-some-pop 618 chr1 4338585 4338586 rs75263049 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 618 chr1 4338895 4338896 rs72631054 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,maf-5-all-pops 618 chr1 4338957 4338958 rs988078 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_JCM,TISHKOFF,TSC-CSHL, 2 A,G, 408.000000,4600.000000, 0.081470,0.918530, maf-5-some-pop 618 chr1 4339245 4339246 rs72855147 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop 618 chr1 4339391 4339392 rs75514867 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop,maf-5-all-pops 618 chr1 4339513 4339514 rs78579165 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 618 chr1 4339601 4339602 rs72855153 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 493.000000,4515.000000, 0.098443,0.901558, maf-5-some-pop,maf-5-all-pops 618 chr1 4339651 4339652 rs72855156 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4329.000000,679.000000, 0.864417,0.135583, maf-5-some-pop 618 chr1 4339935 4339936 rs76627705 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 618 chr1 4340016 4340017 rs72855157 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop 618 chr1 4340426 4340427 rs72855160 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4328.000000,680.000000, 0.864217,0.135783, maf-5-some-pop 618 chr1 4340464 4340465 rs74861077 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 618 chr1 4340510 4340511 rs72855162 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 680.000000,4328.000000, 0.135783,0.864217, maf-5-some-pop 618 chr1 4340693 4340694 rs114869820 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop,maf-5-all-pops 618 chr1 4340802 4340803 rs75154409 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BGI,JMKIDD_LAB,TISHKOFF, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 618 chr1 4341012 4341013 rs12057140 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop 618 chr1 4341158 4341159 rs77278824 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,MPI_MOLGEN, 2 A,T, 51.000000,4957.000000, 0.010184,0.989816, 618 chr1 4341223 4341224 rs78088404 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4516.000000,492.000000, 0.901757,0.098243, maf-5-some-pop 618 chr1 4341233 4341234 rs79794329 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 678.000000,4330.000000, 0.135383,0.864617, maf-5-some-pop 618 chr1 4341245 4341246 rs72855164 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4519.000000,489.000000, 0.902356,0.097644, maf-5-some-pop 618 chr1 4341247 4341248 rs114240958 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 618 chr1 4341354 4341355 rs7536866 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2313.000000,2695.000000, 0.461861,0.538139, maf-5-some-pop,maf-5-all-pops 618 chr1 4341393 4341394 rs78422780 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4323.000000,685.000000, 0.863219,0.136781, maf-5-some-pop 618 chr1 4341397 4341398 rs7555234 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2224.000000,2784.000000, 0.444089,0.555911, maf-5-some-pop,maf-5-all-pops 618 chr1 4341446 4341447 rs61398504 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 491.000000,4517.000000, 0.098043,0.901957, maf-5-some-pop 618 chr1 4341452 4341453 rs16838523 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4331.000000,677.000000, 0.864816,0.135184, maf-5-some-pop 618 chr1 4341480 4341481 rs75568893 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 C,T, 90.000000,4918.000000, 0.017971,0.982029, maf-5-some-pop,maf-5-all-pops 618 chr1 4341516 4341517 rs17407901 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 4604.000000,404.000000, 0.919329,0.080671, maf-5-some-pop 618 chr1 4341598 4341599 rs16838526 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 G,T, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop,maf-5-all-pops 618 chr1 4341647 4341648 rs79086939 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4813.000000,195.000000, 0.961062,0.038938, maf-5-some-pop 618 chr1 4341868 4341869 rs16838531 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,G, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 618 chr1 4342256 4342257 rs185584550 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 618 chr1 4342603 4342604 rs1495244 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2128.000000,2880.000000, 0.424920,0.575080, maf-5-some-pop,maf-5-all-pops 618 chr1 4342789 4342790 rs12060054 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 618 chr1 4343034 4343035 rs16838542 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4504.000000,504.000000, 0.899361,0.100639, maf-5-some-pop 618 chr1 4343133 4343134 rs6704138 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,T, 2782.000000,2226.000000, 0.555511,0.444489, maf-5-some-pop,maf-5-all-pops 618 chr1 4343342 4343343 rs149569526 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, 618 chr1 4343375 4343376 rs74984221 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 521.000000,4487.000000, 0.104034,0.895966, maf-5-some-pop,maf-5-all-pops 618 chr1 4343397 4343398 rs16838544 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 618 chr1 4343433 4343434 rs6702000 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 2779.000000,2229.000000, 0.554912,0.445088, maf-5-some-pop,maf-5-all-pops 618 chr1 4343530 4343531 rs74699101 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 4822.000000,186.000000, 0.962859,0.037141, maf-5-some-pop,maf-5-all-pops 618 chr1 4343544 4343545 rs16838547 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 G,T, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop,maf-5-all-pops 618 chr1 4343580 4343581 rs16838549 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 618 chr1 4343734 4343735 rs17408082 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,C, 397.000000,4611.000000, 0.079273,0.920727, maf-5-some-pop 618 chr1 4343929 4343930 rs981224 0 - T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4343947 4343948 rs16838558 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop,maf-5-all-pops 618 chr1 4344159 4344160 rs60206970 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK, 2 A,G, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 618 chr1 4344235 4344236 rs79557038 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4950.000000,58.000000, 0.988419,0.011582, 618 chr1 4344515 4344516 rs115365767 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 618 chr1 4344590 4344591 rs77313665 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 173.000000,4835.000000, 0.034545,0.965455, maf-5-some-pop,maf-5-all-pops 618 chr1 4344632 4344633 rs72855176 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,maf-5-all-pops 618 chr1 4344747 4344748 rs115891418 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 186.000000,4822.000000, 0.037141,0.962859, maf-5-some-pop,maf-5-all-pops 618 chr1 4344908 4344908 rs59779028 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,A, 4318.000000,690.000000, 0.862220,0.137780, 618 chr1 4345033 4345034 rs139081342 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 4822.000000,186.000000, 0.962859,0.037141, 618 chr1 4345061 4345062 rs61520264 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,C, 688.000000,4320.000000, 0.137380,0.862620, maf-5-some-pop 618 chr1 4345122 4345123 rs115322566 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 618 chr1 4345167 4345168 rs115959481 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 618 chr1 4345257 4345258 rs59189801 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB, 2 A,G, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 618 chr1 4345360 4345361 rs77525796 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 618 chr1 4345375 4345376 rs72855178 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4504.000000,504.000000, 0.899361,0.100639, maf-5-some-pop,maf-5-all-pops 618 chr1 4345483 4345484 rs114734448 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 618 chr1 4345497 4345498 rs16838559 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,BUSHMAN,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,G, 185.000000,4823.000000, 0.036941,0.963059, maf-5-some-pop 618 chr1 4345677 4345678 rs60081206 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop,maf-5-all-pops 618 chr1 4345707 4345708 rs57104039 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 4773.000000,235.000000, 0.953075,0.046925, maf-5-some-pop,maf-5-all-pops 618 chr1 4346013 4346014 rs57604222 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4006.000000,1002.000000, 0.799920,0.200080, maf-5-some-pop,maf-5-all-pops 618 chr1 4346181 4346182 rs72855180 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 899.000000,4109.000000, 0.179513,0.820487, maf-5-some-pop,maf-5-all-pops 618 chr1 4346212 4346213 rs115540351 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 398.000000,4610.000000, 0.079473,0.920527, maf-5-some-pop,maf-5-all-pops 618 chr1 4346225 4346226 rs78014901 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1002.000000,4006.000000, 0.200080,0.799920, maf-5-some-pop,maf-5-all-pops 618 chr1 4346338 4346339 rs12060572 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4270.000000,738.000000, 0.852636,0.147364, maf-5-some-pop 618 chr1 4346528 4346529 rs74898978 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4485.000000,523.000000, 0.895567,0.104433, maf-5-some-pop,maf-5-all-pops 618 chr1 4346546 4346547 rs10915499 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 2220.000000,2788.000000, 0.443291,0.556709, maf-5-some-pop,maf-5-all-pops 618 chr1 4346644 4346645 rs12119455 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1055.000000,3953.000000, 0.210663,0.789337, 618 chr1 4346655 4346656 rs59542762 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 502.000000,4506.000000, 0.100240,0.899760, 618 chr1 4346857 4346858 rs12143875 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, 618 chr1 4346870 4346871 rs10915500 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2779.000000,2229.000000, 0.554912,0.445088, maf-5-some-pop,maf-5-all-pops 618 chr1 4346987 4346988 rs4463633 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4195.000000,813.000000, 0.837660,0.162340, 618 chr1 4346991 4346992 rs12061596 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 306.000000,4702.000000, 0.061102,0.938898, 618 chr1 4347417 4347418 rs115423377 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 80.000000,4928.000000, 0.015974,0.984026, 618 chr1 4347643 4347644 rs115927049 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop,maf-5-all-pops 618 chr1 4347673 4347674 rs72855190 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 2215.000000,2793.000000, 0.442292,0.557708, maf-5-some-pop,maf-5-all-pops 618 chr1 4347840 4347841 rs72855191 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1815.000000,3193.000000, 0.362420,0.637580, maf-5-some-pop,maf-5-all-pops 618 chr1 4347873 4347874 rs116067607 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 618 chr1 4347911 4347912 rs116392348 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop,maf-5-all-pops 618 chr1 4347947 4347948 rs113496894 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4610.000000,398.000000, 0.920527,0.079473, maf-5-some-pop 618 chr1 4348073 4348074 rs80199371 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop 618 chr1 4348204 4348205 rs78129923 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 406.000000,4602.000000, 0.081070,0.918930, maf-5-some-pop 618 chr1 4348526 4348527 rs10915501 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 4584.000000,424.000000, 0.915335,0.084665, maf-5-some-pop 618 chr1 4348534 4348535 rs10915502 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,T, 423.000000,4585.000000, 0.084465,0.915535, maf-5-some-pop 618 chr1 4348617 4348618 rs10915503 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 C,T, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop 618 chr1 4348820 4348821 rs77485997 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop,maf-5-all-pops 618 chr1 4348874 4348875 rs80301878 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 618 chr1 4349302 4349303 rs114011962 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop 618 chr1 4349488 4349489 rs75106346 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4585.000000,423.000000, 0.915535,0.084465, maf-5-some-pop 618 chr1 4349505 4349506 rs115884078 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4585.000000,423.000000, 0.915535,0.084465, maf-5-some-pop 618 chr1 4349556 4349557 rs78232213 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 423.000000,4585.000000, 0.084465,0.915535, maf-5-some-pop,maf-5-all-pops 618 chr1 4349679 4349680 rs7511825 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4610.000000,398.000000, 0.920527,0.079473, maf-5-some-pop,maf-5-all-pops 618 chr1 4349729 4349730 rs115063968 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4927.000000,81.000000, 0.983826,0.016174, 618 chr1 4349733 4349734 rs116706335 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 618 chr1 4349759 4349760 rs111757731 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 398.000000,4610.000000, 0.079473,0.920527, maf-5-some-pop,maf-5-all-pops 618 chr1 4350123 4350124 rs75777064 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 343.000000,4665.000000, 0.068490,0.931510, maf-5-some-pop 618 chr1 4350132 4350133 rs58711317 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 618 chr1 4350656 4350657 rs149179635 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 81.000000,4927.000000, 0.016174,0.983826, 618 chr1 4350673 4350674 rs116100428 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4586.000000,422.000000, 0.915735,0.084265, maf-5-some-pop 618 chr1 4350858 4350859 rs12066140 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop 618 chr1 4351056 4351057 rs78087616 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 516.000000,4492.000000, 0.103035,0.896965, maf-5-some-pop,maf-5-all-pops 618 chr1 4351079 4351080 rs76461727 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop 618 chr1 4351200 4351201 rs114841368 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,MPI_MOLGEN, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 618 chr1 4351526 4351527 rs75567563 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 331.000000,4677.000000, 0.066094,0.933906, maf-5-some-pop 618 chr1 4351676 4351677 rs113526441 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 618 chr1 4351763 4351764 rs7522770 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4492.000000,516.000000, 0.896965,0.103035, maf-5-some-pop,maf-5-all-pops 618 chr1 4351887 4351888 rs16838560 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop 618 chr1 4351902 4351903 rs114242714 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 237.000000,4771.000000, 0.047324,0.952676, maf-5-some-pop 618 chr1 4351950 4351951 rs74674301 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 618 chr1 4352440 4352444 rs140014939 0 + ATTT ATTT -/ATTT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,ATTT, 332.000000,4676.000000, 0.066294,0.933706, 618 chr1 4352498 4352499 rs76934500 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop,maf-5-all-pops 618 chr1 4352547 4352548 rs77475827 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, 618 chr1 4352587 4352588 rs56907333 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,ILLUMINA-UK, 2 A,T, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 618 chr1 4352709 4352710 rs16838561 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1621.000000,3387.000000, 0.323682,0.676318, maf-5-some-pop 618 chr1 4352935 4352936 rs116226922 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 618 chr1 4353225 4353226 rs115115766 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 53.000000,4955.000000, 0.010583,0.989417, 618 chr1 4353236 4353237 rs115330395 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 618 chr1 4353286 4353287 rs16838562 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 4650.000000,358.000000, 0.928514,0.071486, maf-5-some-pop 618 chr1 4353385 4353386 rs72855193 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 138.000000,4870.000000, 0.027556,0.972444, maf-5-some-pop,maf-5-all-pops 618 chr1 4354059 4354060 rs7529363 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2785.000000,2223.000000, 0.556110,0.443890, maf-5-some-pop,maf-5-all-pops 618 chr1 4354165 4354166 rs74049158 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,G, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 618 chr1 4354220 4354221 rs76631955 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 618 chr1 4354711 4354712 rs59885205 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop,maf-5-all-pops 618 chr1 4354823 4354824 rs79681151 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 618 chr1 4355038 4355039 rs147673380 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,G, 53.000000,4955.000000, 0.010583,0.989417, 618 chr1 4355045 4355046 rs4525013 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,C, 522.000000,4486.000000, 0.104233,0.895767, maf-5-some-pop,maf-5-all-pops 618 chr1 4355206 4355207 rs114800156 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 618 chr1 4355342 4355343 rs6678941 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 4600.000000,408.000000, 0.918530,0.081470, maf-5-some-pop,maf-5-all-pops 618 chr1 4355492 4355493 rs12123539 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1730.000000,3278.000000, 0.345447,0.654553, maf-5-some-pop,maf-5-all-pops 618 chr1 4355526 4355527 rs77345218 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, 618 chr1 4356169 4356170 rs550826530 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 389.000000,4619.000000, 0.077676,0.922324, 618 chr1 4356170 4356171 rs567539065 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4619.000000,389.000000, 0.922324,0.077676, 618 chr1 4356190 4356210 rs533797673 0 + CCATCCATCCATCCATCCAC CCATCCATCCATCCATCCAC -/CCATCCATCCATCCATCCAC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CCATCCATCCATCCATCCAC, 2566.000000,2442.000000, 0.512380,0.487620, 618 chr1 4356392 4356392 rs376734695 0 + - - -/ATCA genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,SSIP, 2 -,ATCA, 3870.000000,1138.000000, 0.772764,0.227236, 618 chr1 4356605 4356606 rs540044043 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 618 chr1 4356804 4356805 rs11487456 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1886.000000,3122.000000, 0.376597,0.623403, maf-5-some-pop,maf-5-all-pops 618 chr1 4357290 4357291 rs150187289 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 618 chr1 4357369 4357370 rs111362102 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 618 chr1 4357445 4357446 rs115368393 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 618 chr1 4357458 4357459 rs113854259 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 618 chr1 4357575 4357576 rs7413845 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 340.000000,4668.000000, 0.067891,0.932109, maf-5-some-pop,maf-5-all-pops 618 chr1 4357784 4357785 rs76045650 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 59.000000,4949.000000, 0.011781,0.988219, 618 chr1 4357800 4357801 rs74853796 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, maf-5-some-pop,maf-5-all-pops 618 chr1 4357853 4357854 rs12066637 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4792.000000,216.000000, 0.956869,0.043131, maf-5-some-pop,maf-5-all-pops 618 chr1 4357924 4357925 rs61769408 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4482.000000,526.000000, 0.894968,0.105032, maf-5-some-pop,maf-5-all-pops 618 chr1 4358007 4358008 rs58506471 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 921.000000,4087.000000, 0.183906,0.816094, maf-5-some-pop,maf-5-all-pops 618 chr1 4358264 4358265 rs16838566 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 400.000000,4608.000000, 0.079872,0.920128, maf-5-some-pop 618 chr1 4358313 4358314 rs72855199 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4769.000000,239.000000, 0.952276,0.047724, maf-5-some-pop,maf-5-all-pops 618 chr1 4358348 4358349 rs35559925 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4609.000000,399.000000, 0.920327,0.079673, maf-5-some-pop,maf-5-all-pops 618 chr1 4358525 4358526 rs61769410 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4609.000000,399.000000, 0.920327,0.079673, maf-5-some-pop,maf-5-all-pops 618 chr1 4358806 4358807 rs10753377 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3455.000000,1553.000000, 0.689896,0.310104, maf-5-some-pop,maf-5-all-pops 618 chr1 4358867 4358868 rs115157044 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 618 chr1 4359165 4359166 rs12562995 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop 618 chr1 4359229 4359230 rs78696635 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 G,T, 228.000000,4780.000000, 0.045527,0.954473, maf-5-some-pop,maf-5-all-pops 618 chr1 4359382 4359383 rs12564602 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 402.000000,4606.000000, 0.080272,0.919728, maf-5-some-pop 618 chr1 4359393 4359394 rs12564603 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop 618 chr1 4359440 4359441 rs116414979 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 618 chr1 4359527 4359528 rs12752328 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop,maf-5-all-pops 618 chr1 4359610 4359611 rs12564378 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4607.000000,401.000000, 0.919928,0.080072, maf-5-some-pop,maf-5-all-pops 618 chr1 4359614 4359615 rs12564379 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4607.000000,401.000000, 0.919928,0.080072, maf-5-some-pop,maf-5-all-pops 618 chr1 4359708 4359709 rs34152584 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop,maf-5-all-pops 618 chr1 4359842 4359843 rs35777083 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop,maf-5-all-pops 618 chr1 4359950 4359951 rs115377561 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4926.000000,82.000000, 0.983626,0.016374, 618 chr1 4359994 4359995 rs61769415 0 + T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,T, 450.000000,4558.000000, 0.089856,0.910144, maf-5-some-pop,maf-5-all-pops 618 chr1 4360130 4360131 rs592323 0 + G G G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 472.000000,4536.000000, 0.094249,0.905751, maf-5-some-pop,maf-5-all-pops 618 chr1 4360347 4360348 rs34546429 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 391.000000,4617.000000, 0.078075,0.921925, maf-5-some-pop,maf-5-all-pops 618 chr1 4360573 4360574 rs34648307 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4618.000000,390.000000, 0.922125,0.077875, maf-5-some-pop,maf-5-all-pops 618 chr1 4360720 4360721 rs12747142 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 377.000000,4631.000000, 0.075280,0.924720, maf-5-some-pop 618 chr1 4361462 4361463 rs116336584 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 64.000000,4944.000000, 0.012780,0.987220, 618 chr1 4361473 4361474 rs115122541 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 618 chr1 4362021 4362022 rs115130308 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 618 chr1 4362184 4362185 rs11804059 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 A,C, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop,maf-5-all-pops 618 chr1 4362488 4362489 rs642628 0 - A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 618 chr1 4362515 4362516 rs11804434 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,TISHKOFF, 2 C,T, 4866.000000,142.000000, 0.971645,0.028355, maf-5-some-pop,maf-5-all-pops 618 chr1 4362746 4362747 rs77897177 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop 618 chr1 4363038 4363039 rs113612581 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 A,G, 4117.000000,891.000000, 0.822085,0.177915, 618 chr1 4363102 4363103 rs12746271 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSAHASNP, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 618 chr1 4363117 4363118 rs7416868 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,EVA-GONL,SC_JCM,SSMP, 2 C,T, 95.000000,4913.000000, 0.018970,0.981030, 618 chr1 4363187 4363197 rs200400406 0 + CATTCCATTC CATTCCATTC -/CATTCCATTC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 -,CATTCCATTC, 1527.000000,3481.000000, 0.304912,0.695088, 618 chr1 4363324 4363325 rs71640919 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,EVA-GONL,HUMANGENOME_JCVI,SSMP, 2 C,T, 844.000000,4164.000000, 0.168530,0.831470, 618 chr1 4363334 4363335 rs34211962 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,EVA-GONL,SSMP, 2 C,T, 317.000000,4691.000000, 0.063299,0.936701, 618 chr1 4363551 4363552 rs3124337 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop,maf-5-all-pops 618 chr1 4363594 4363595 rs11804888 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB, 2 C,T, 4582.000000,426.000000, 0.914936,0.085064, maf-5-some-pop,maf-5-all-pops 618 chr1 4363624 4363625 rs74049161 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4250.000000,758.000000, 0.848642,0.151358, maf-5-some-pop 618 chr1 4363645 4363646 rs5772148 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,T, 3741.000000,1267.000000, 0.747005,0.252995, 618 chr1 4363701 4363702 rs113406942 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop,maf-5-all-pops 618 chr1 4363734 4363735 rs34429154 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,C, 2411.000000,2597.000000, 0.481430,0.518570, maf-5-some-pop,maf-5-all-pops 618 chr1 4363850 4363851 rs111727024 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 618 chr1 4364351 4364351 rs35994072 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,TISHKOFF, 2 -,C, 4146.000000,862.000000, 0.827875,0.172125, 618 chr1 4364681 4364682 rs2132174 0 - T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4364940 4364941 rs3007778 0 - G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4365313 4365314 rs72631061 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1540.000000,3468.000000, 0.307508,0.692492, maf-5-some-pop,maf-5-all-pops 618 chr1 4365676 4365677 rs56301161 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop,maf-5-all-pops 618 chr1 4365680 4365681 rs351624 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1976.000000,3032.000000, 0.394569,0.605431, maf-5-some-pop,maf-5-all-pops 618 chr1 4366005 4366006 rs56198562 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3392.000000,1616.000000, 0.677316,0.322684, maf-5-some-pop,maf-5-all-pops 618 chr1 4366633 4366634 rs1845634 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop,maf-5-all-pops 618 chr1 4366644 4366645 rs11804880 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB, 2 A,T, 69.000000,4939.000000, 0.013778,0.986222, 618 chr1 4366711 4366712 rs116210944 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 618 chr1 4367172 4367173 rs116019360 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,maf-5-all-pops 618 chr1 4367322 4367323 rs1490413 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2507.000000,2501.000000, 0.500599,0.499401, maf-5-some-pop,maf-5-all-pops 618 chr1 4367547 4367548 rs138943261 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4943.000000,65.000000, 0.987021,0.012979, 618 chr1 4367581 4367582 rs12075294 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, 2 A,G, 4652.000000,356.000000, 0.928914,0.071086, maf-5-some-pop 618 chr1 4367877 4367878 rs6686753 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM_SSAHASNP,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop 618 chr1 4367921 4367922 rs1817914 0 + T T C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop 618 chr1 4368166 4368167 rs9783100 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,WI_SSAHASNP, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop,maf-5-all-pops 618 chr1 4368215 4368216 rs4654523 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4455.000000,553.000000, 0.889577,0.110423, maf-5-some-pop 618 chr1 4368270 4368271 rs10915508 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 818.000000,4190.000000, 0.163339,0.836661, maf-5-some-pop 618 chr1 4368303 4368304 rs16838616 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 729.000000,4279.000000, 0.145567,0.854433, maf-5-some-pop 618 chr1 4368440 4368441 rs351622 0 + A A A/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 920.000000,4088.000000, 0.183706,0.816294, maf-5-some-pop 618 chr1 4368715 4368716 rs35859964 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 253.000000,4755.000000, 0.050519,0.949481, maf-5-some-pop,maf-5-all-pops 618 chr1 4368718 4368719 rs351621 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3150.000000,1858.000000, 0.628994,0.371006, maf-5-some-pop,maf-5-all-pops 618 chr1 4368743 4368744 rs351620 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1991.000000,3017.000000, 0.397564,0.602436, maf-5-some-pop,maf-5-all-pops 618 chr1 4368744 4368745 rs34591111 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 82.000000,4926.000000, 0.016374,0.983626, 618 chr1 4368941 4368942 rs351618 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3802.000000,1206.000000, 0.759185,0.240815, maf-5-some-pop,maf-5-all-pops 618 chr1 4368950 4368951 rs351617 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2703.000000,2305.000000, 0.539736,0.460264, maf-5-some-pop,maf-5-all-pops 618 chr1 4369027 4369028 rs115161129 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 618 chr1 4369099 4369100 rs2087571 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4319.000000,689.000000, 0.862420,0.137580, maf-5-some-pop,maf-5-all-pops 618 chr1 4369100 4369101 rs12735018 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 618 chr1 4369663 4369664 rs114328745 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4950.000000,58.000000, 0.988419,0.011582, 618 chr1 4369816 4369817 rs115331845 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 618 chr1 4369906 4369907 rs351616 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1393.000000,3615.000000, 0.278155,0.721845, maf-5-some-pop,maf-5-all-pops 618 chr1 4370129 4370130 rs116662903 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 618 chr1 4370134 4370135 rs114461609 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 618 chr1 4370345 4370346 rs16838636 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 100.000000,4908.000000, 0.019968,0.980032, maf-5-some-pop 618 chr1 4370580 4370581 rs7544916 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4300.000000,708.000000, 0.858626,0.141374, maf-5-some-pop 618 chr1 4370793 4370794 rs116305350 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 618 chr1 4371108 4371109 rs5772150 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BILGI_BIOE,BL,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 4211.000000,797.000000, 0.840855,0.159145, 618 chr1 4371147 4371148 rs116756650 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 618 chr1 4371237 4371238 rs151335587 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 618 chr1 4371358 4371359 rs71640920 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, 618 chr1 4371470 4371471 rs138415465 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 618 chr1 4371862 4371863 rs351614 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3705.000000,1303.000000, 0.739816,0.260184, maf-5-some-pop,maf-5-all-pops 618 chr1 4371920 4371921 rs114635474 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 618 chr1 4372469 4372470 rs716214 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3064.000000,1944.000000, 0.611821,0.388179, maf-5-some-pop,maf-5-all-pops 618 chr1 4372963 4372964 rs115175481 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 618 chr1 4373052 4373053 rs116137581 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 618 chr1 4373171 4373172 rs171260 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM_SSAHASNP,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP, 2 A,C, 4445.000000,563.000000, 0.887580,0.112420, maf-5-some-pop 618 chr1 4373280 4373281 rs111373156 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 618 chr1 4373678 4373679 rs115893301 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 618 chr1 4374143 4374144 rs145473799 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 618 chr1 4374270 4374271 rs351613 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 702.000000,4306.000000, 0.140176,0.859824, 618 chr1 4374570 4374571 rs12406634 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 608.000000,4400.000000, 0.121406,0.878594, maf-5-some-pop,maf-5-all-pops 618 chr1 4375159 4375160 rs11585899 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4297.000000,711.000000, 0.858027,0.141973, maf-5-some-pop 618 chr1 4375287 4375288 rs35874160 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4801.000000,207.000000, 0.958666,0.041334, maf-5-some-pop,maf-5-all-pops 618 chr1 4375504 4375505 rs79620151 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 618 chr1 4375834 4375835 rs113260301 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 103.000000,4905.000000, 0.020567,0.979433, maf-5-some-pop,maf-5-all-pops 618 chr1 4375858 4375859 rs10915509 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 4296.000000,712.000000, 0.857827,0.142173, maf-5-some-pop 618 chr1 4376136 4376137 rs111275187 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, 618 chr1 4376504 4376505 rs112792567 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, maf-5-some-pop,maf-5-all-pops 618 chr1 4376691 4376692 rs115547345 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 618 chr1 4376828 4376828 rs56762609 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 4274.000000,734.000000, 0.853435,0.146565, 618 chr1 4377031 4377032 rs3912752 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4291.000000,717.000000, 0.856829,0.143171, maf-5-some-pop 618 chr1 4377211 4377212 rs59057660 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4349.000000,659.000000, 0.868411,0.131589, maf-5-some-pop 618 chr1 4377372 4377373 rs72631067 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4103.000000,905.000000, 0.819289,0.180711, maf-5-some-pop,maf-5-all-pops 618 chr1 4377427 4377428 rs61769418 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 4520.000000,488.000000, 0.902556,0.097444, maf-5-some-pop,maf-5-all-pops 618 chr1 4377562 4377563 rs10915510 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 4389.000000,619.000000, 0.876398,0.123602, maf-5-some-pop 618 chr1 4377643 4377644 rs10915511 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,G, 4389.000000,619.000000, 0.876398,0.123602, maf-5-some-pop 618 chr1 4377741 4377742 rs183060895 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 618 chr1 4377910 4377911 rs351596 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop 618 chr1 4378050 4378051 rs112069807 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 618 chr1 4378133 4378134 rs12744254 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 717.000000,4291.000000, 0.143171,0.856829, maf-5-some-pop 618 chr1 4378210 4378211 rs12731948 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 618 chr1 4378416 4378422 rs201062370 0 + ATATAC ATATAC -/ATATAC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,ATATAC, 2954.000000,2054.000000, 0.589856,0.410144, 618 chr1 4378587 4378588 rs79178012 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ENSEMBL, 2 A,G, 399.000000,4609.000000, 0.079673,0.920327, 618 chr1 4378589 4378590 rs10915512 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1012.000000,3996.000000, 0.202077,0.797923, maf-5-some-pop 618 chr1 4378736 4378737 rs11585890 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4290.000000,718.000000, 0.856629,0.143371, 618 chr1 4379010 4379011 rs116228534 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop,maf-5-all-pops 618 chr1 4379094 4379095 rs59704180 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 618 chr1 4379214 4379215 rs138596181 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 108.000000,4900.000000, 0.021566,0.978435, 618 chr1 4379355 4379356 rs11586435 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 G,T, 619.000000,4389.000000, 0.123602,0.876398, maf-5-some-pop 618 chr1 4379412 4379413 rs12408275 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 2029.000000,2979.000000, 0.405152,0.594848, maf-5-some-pop,maf-5-all-pops 618 chr1 4379470 4379471 rs12407503 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 2979.000000,2029.000000, 0.594848,0.405152, maf-5-some-pop,maf-5-all-pops 618 chr1 4379516 4379517 rs116789579 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 618 chr1 4379686 4379687 rs12408012 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3010.000000,1998.000000, 0.601038,0.398962, maf-5-some-pop,maf-5-all-pops 618 chr1 4379726 4379727 rs12408318 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1983.000000,3025.000000, 0.395966,0.604034, maf-5-some-pop,maf-5-all-pops 618 chr1 4379777 4379778 rs145945551 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 618 chr1 4379851 4379852 rs16838662 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,PERLEGEN, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop 618 chr1 4379876 4379877 rs876273 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,TSC-CSHL, 2 C,G, 4853.000000,155.000000, 0.969050,0.030950, maf-5-some-pop 618 chr1 4379957 4379958 rs351598 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2426.000000,2582.000000, 0.484425,0.515575, maf-5-some-pop 618 chr1 4380086 4380087 rs114761648 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 89.000000,4919.000000, 0.017772,0.982228, maf-5-some-pop,maf-5-all-pops 618 chr1 4380305 4380306 rs114011912 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 618 chr1 4380404 4380404 rs35972891 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,ABI,BILGI_BIOE,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 3199.000000,1809.000000, 0.638778,0.361222, 618 chr1 4380502 4380503 rs12408633 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 161.000000,4847.000000, 0.032149,0.967851, 618 chr1 4380517 4380518 rs7418164 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 618 chr1 4381222 4381226 rs141263233 0 + GGTG GGTG -/GGTG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GGTG, 221.000000,4787.000000, 0.044129,0.955871, 618 chr1 4381257 4381258 rs117393648 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,T, 216.000000,4792.000000, 0.043131,0.956869, maf-5-some-pop,maf-5-all-pops 618 chr1 4381287 4381288 rs11808932 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 372.000000,4636.000000, 0.074281,0.925719, maf-5-some-pop,maf-5-all-pops 618 chr1 4381387 4381388 rs35197903 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4864.000000,144.000000, 0.971246,0.028754, 618 chr1 4381407 4381408 rs11808220 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4607.000000,401.000000, 0.919928,0.080072, 618 chr1 4381544 4381546 rs199824032 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AT, 73.000000,4935.000000, 0.014577,0.985423, 618 chr1 4381728 4381729 rs351601 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 488.000000,4520.000000, 0.097444,0.902556, maf-5-some-pop 618 chr1 4381746 4381747 rs111364769 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 618 chr1 4382234 4382235 rs351602 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4363.000000,645.000000, 0.871206,0.128794, maf-5-some-pop 618 chr1 4382713 4382714 rs351604 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 516.000000,4492.000000, 0.103035,0.896965, maf-5-some-pop 618 chr1 4382877 4382878 rs16838676 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,PERLEGEN, 2 C,G, 98.000000,4910.000000, 0.019569,0.980431, maf-5-some-pop 618 chr1 4382978 4382979 rs13375925 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,WUGSC_SSAHASNP, 2 C,T, 4423.000000,585.000000, 0.883187,0.116813, maf-5-some-pop 618 chr1 4383051 4383052 rs72856539 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 618 chr1 4383474 4383475 rs114794043 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 618 chr1 4383685 4383686 rs924010 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4827.000000,181.000000, 0.963858,0.036142, maf-5-some-pop 618 chr1 4383737 4383738 rs79973051 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 618 chr1 4383779 4383780 rs76000572 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4790.000000,218.000000, 0.956470,0.043530, maf-5-some-pop,maf-5-all-pops 618 chr1 4384024 4384025 rs115955305 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 336.000000,4672.000000, 0.067093,0.932907, maf-5-some-pop,maf-5-all-pops 618 chr1 4384055 4384056 rs351606 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3844.000000,1164.000000, 0.767572,0.232428, maf-5-some-pop 618 chr1 4384207 4384207 rs138340931 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,GMI,LUNTER,SSIP,TISHKOFF, 2 -,A, 4650.000000,358.000000, 0.928514,0.071486, 618 chr1 4384262 4384263 rs16838692 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4457.000000,551.000000, 0.889976,0.110024, maf-5-some-pop,maf-5-all-pops 618 chr1 4384295 4384296 rs351607 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3802.000000,1206.000000, 0.759185,0.240815, maf-5-some-pop,maf-5-all-pops 618 chr1 4384772 4384773 rs351608 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 G,T, 962.000000,4046.000000, 0.192093,0.807907, maf-5-some-pop 618 chr1 4384854 4384855 rs114853115 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 618 chr1 4384858 4384859 rs351609 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1765.000000,3243.000000, 0.352436,0.647564, maf-5-some-pop 618 chr1 4385370 4385371 rs76484950 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop,maf-5-all-pops 618 chr1 4385747 4385748 rs12042246 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 525.000000,4483.000000, 0.104832,0.895168, maf-5-some-pop 618 chr1 4385783 4385784 rs72631071 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, 618 chr1 4386139 4386140 rs148035894 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 618 chr1 4386358 4386359 rs491572 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop,maf-5-all-pops 618 chr1 4386481 4386482 rs144720677 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 618 chr1 4387297 4387298 rs1907070 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3179.000000,1829.000000, 0.634784,0.365216, maf-5-some-pop,maf-5-all-pops 618 chr1 4387483 4387484 rs79334271 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop,maf-5-all-pops 618 chr1 4387824 4387826 rs145020907 0 + TC TC -/TC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,TC, 208.000000,4800.000000, 0.041533,0.958466, 618 chr1 4388425 4388426 rs116023373 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4955.000000,53.000000, 0.989417,0.010583, 618 chr1 4388482 4388483 rs151036903 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 4929.000000,79.000000, 0.984225,0.015775, 618 chr1 4388617 4388618 rs114530315 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 618 chr1 4388690 4388691 rs12138891 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,PJP,SC_SNP,SSMP, 2 C,T, 4471.000000,537.000000, 0.892772,0.107228, maf-5-some-pop,maf-5-all-pops 618 chr1 4388757 4388758 rs12042782 0 + C C C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4288.000000,720.000000, 0.856230,0.143770, maf-5-some-pop 618 chr1 4388848 4388849 rs115586930 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 618 chr1 4388988 4388989 rs12042854 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4264.000000,744.000000, 0.851438,0.148562, maf-5-some-pop,maf-5-all-pops 618 chr1 4389198 4389199 rs581070 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 2099.000000,2909.000000, 0.419129,0.580871, maf-5-some-pop,maf-5-all-pops 618 chr1 4389905 4389906 rs116647983 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 G,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 618 chr1 4389965 4389966 rs626389 0 - T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SC_JCM,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 618 chr1 4390002 4390006 rs570110104 0 + GGGG GGGG -/GGGG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GGGG, 1815.000000,3193.000000, 0.362420,0.637580, 618 chr1 4390011 4390012 rs201126837 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,G, 403.000000,4605.000000, 0.080471,0.919529, 618 chr1 4390135 4390136 rs34091304 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3658.000000,1350.000000, 0.730431,0.269569, maf-5-some-pop,maf-5-all-pops 618 chr1 4390431 4390432 rs10915515 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1817.000000,3191.000000, 0.362819,0.637181, maf-5-some-pop,maf-5-all-pops 618 chr1 4390482 4390483 rs115478678 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, maf-5-some-pop,maf-5-all-pops 618 chr1 4390572 4390573 rs79874112 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4438.000000,570.000000, 0.886182,0.113818, maf-5-some-pop,maf-5-all-pops 618 chr1 4390590 4390591 rs613318 0 - C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4390936 4390937 rs528748 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3443.000000,1565.000000, 0.687500,0.312500, maf-5-some-pop,maf-5-all-pops 618 chr1 4391015 4391016 rs529600 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 593.000000,4415.000000, 0.118411,0.881589, maf-5-some-pop 618 chr1 4391059 4391060 rs611105 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1617.000000,3391.000000, 0.322883,0.677117, maf-5-some-pop,maf-5-all-pops 618 chr1 4391286 4391287 rs610169 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3406.000000,1602.000000, 0.680112,0.319888, maf-5-some-pop,maf-5-all-pops 618 chr1 4391390 4391391 rs76664831 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4623.000000,385.000000, 0.923123,0.076877, maf-5-some-pop,maf-5-all-pops 618 chr1 4391543 4391544 rs36115457 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop,maf-5-all-pops 618 chr1 4391692 4391693 rs1687203 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3440.000000,1568.000000, 0.686901,0.313099, maf-5-some-pop,maf-5-all-pops 618 chr1 4391810 4391811 rs72631074 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,GMI,SSMP, 2 C,T, 1344.000000,3664.000000, 0.268371,0.731629, 618 chr1 4391819 4391820 rs1691447 0 - T T A/G genomic single by-cluster,by-frequency 0.5 0 unknown exact 1 5 BUSHMAN,ENSEMBL,GMI,SC_JCM,SSMP, 2 A,G, 5.000000,5.000000, 0.500000,0.500000, 618 chr1 4391856 4391857 rs77365999 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,ILLUMINA-UK,SSMP, 2 C,T, 3919.000000,1089.000000, 0.782548,0.217452, 618 chr1 4391961 4391962 rs564154697 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 618 chr1 4392000 4392001 rs549707747 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 618 chr1 4392049 4392050 rs569966516 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4934.000000,74.000000, 0.985224,0.014776, 618 chr1 4392116 4392117 rs549211681 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 618 chr1 4392206 4392207 rs75206560 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,ILLUMINA-UK,SSMP, 2 A,G, 4692.000000,316.000000, 0.936901,0.063099, 618 chr1 4392439 4392440 rs150647722 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 384.000000,4624.000000, 0.076677,0.923323, 618 chr1 4392842 4392843 rs150967452 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4782.000000,226.000000, 0.954872,0.045128, 618 chr1 4392994 4392995 rs113326486 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,SSMP, 2 C,G, 1313.000000,3695.000000, 0.262181,0.737819, 618 chr1 4393194 4393195 rs561983154 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,T, 4907.000000,101.000000, 0.979832,0.020168, 618 chr1 4393462 4393463 rs555629413 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, 618 chr1 4393697 4393697 rs140625762 0 + - - -/TTCC genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,TTCC, 4867.000000,141.000000, 0.971845,0.028155, 618 chr1 4393785 4393786 rs630342 0 - T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4393892 4393893 rs34457369 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 851.000000,4157.000000, 0.169928,0.830072, maf-5-some-pop,maf-5-all-pops 618 chr1 4394008 4394009 rs112801323 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 122.000000,4886.000000, 0.024361,0.975639, maf-5-some-pop,maf-5-all-pops 618 chr1 4394052 4394053 rs12047868 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 851.000000,4157.000000, 0.169928,0.830072, maf-5-some-pop,maf-5-all-pops 618 chr1 4394321 4394322 rs628049 0 - G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4394402 4394403 rs12022802 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1567.000000,3441.000000, 0.312899,0.687101, maf-5-some-pop,maf-5-all-pops 618 chr1 4394423 4394424 rs12021982 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3445.000000,1563.000000, 0.687899,0.312101, maf-5-some-pop,maf-5-all-pops 618 chr1 4394564 4394565 rs6697034 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 437.000000,4571.000000, 0.087260,0.912740, maf-5-some-pop 618 chr1 4394757 4394758 rs114701607 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 618 chr1 4395019 4395020 rs12046130 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop 618 chr1 4395036 4395037 rs76498665 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 618 chr1 4395531 4395532 rs112430659 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,T, 141.000000,4867.000000, 0.028155,0.971845, maf-5-some-pop,maf-5-all-pops 618 chr1 4395562 4395563 rs113144939 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 618 chr1 4395674 4395675 rs112902209 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 618 chr1 4395775 4395776 rs578707 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3445.000000,1563.000000, 0.687899,0.312101, maf-5-some-pop,maf-5-all-pops 618 chr1 4395811 4395812 rs579387 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3352.000000,1656.000000, 0.669329,0.330671, maf-5-some-pop,maf-5-all-pops 618 chr1 4395918 4395919 rs580290 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1556.000000,3452.000000, 0.310703,0.689297, maf-5-some-pop,maf-5-all-pops 618 chr1 4396199 4396200 rs111904515 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 G,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,maf-5-all-pops 618 chr1 4396276 4396277 rs494177 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2047.000000,2961.000000, 0.408746,0.591254, maf-5-some-pop,maf-5-all-pops 618 chr1 4396440 4396441 rs74686118 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4838.000000,170.000000, 0.966054,0.033946, 618 chr1 4396690 4396691 rs113775394 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 A,T, 2087.000000,2921.000000, 0.416733,0.583267, 618 chr1 4396705 4396706 rs74208119 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,HUMANGENOME_JCVI,SSMP, 2 A,G, 1368.000000,3640.000000, 0.273163,0.726837, 618 chr1 4396779 4396780 rs112080305 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 A,G, 2421.000000,2587.000000, 0.483427,0.516573, 618 chr1 4396838 4396839 rs111555716 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,GMI, 2 C,T, 1416.000000,3592.000000, 0.282748,0.717252, 618 chr1 4396853 4396854 rs74955489 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,GMI,ILLUMINA-UK,SSMP, 2 C,T, 3339.000000,1669.000000, 0.666733,0.333267, 618 chr1 4396970 4396971 rs111416899 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 8 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 1599.000000,3409.000000, 0.319289,0.680711, 618 chr1 4397106 4397107 rs147796575 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 618 chr1 4397702 4397703 rs685494 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop,maf-5-all-pops 618 chr1 4397735 4397736 rs588224 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3405.000000,1603.000000, 0.679912,0.320088, maf-5-some-pop,maf-5-all-pops 618 chr1 4397913 4397914 rs1691449 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1603.000000,3405.000000, 0.320088,0.679912, maf-5-some-pop 618 chr1 4398058 4398059 rs528139 0 - G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SC_JCM,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4398255 4398255 rs34054009 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 11 1000GENOMES,ABI,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 2926.000000,2082.000000, 0.584265,0.415735, 618 chr1 4398327 4398328 rs590925 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1599.000000,3409.000000, 0.319289,0.680711, maf-5-some-pop,maf-5-all-pops 618 chr1 4398471 4398472 rs116445557 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop,maf-5-all-pops 618 chr1 4398594 4398595 rs6668009 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4625.000000,383.000000, 0.923522,0.076478, maf-5-some-pop,maf-5-all-pops 618 chr1 4398695 4398696 rs592386 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4400.000000,608.000000, 0.878594,0.121406, maf-5-some-pop 618 chr1 4398859 4398860 rs113266541 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 618 chr1 4399102 4399103 rs34305261 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 3707.000000,1301.000000, 0.740216,0.259784, maf-5-some-pop,maf-5-all-pops 618 chr1 4399686 4399687 rs12408097 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 180.000000,4828.000000, 0.035942,0.964058, 618 chr1 4400285 4400286 rs620253 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 G,T, 1778.000000,3230.000000, 0.355032,0.644968, maf-5-some-pop,maf-5-all-pops 618 chr1 4400433 4400434 rs74387524 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 536.000000,4472.000000, 0.107029,0.892971, maf-5-some-pop,maf-5-all-pops 618 chr1 4400528 4400529 rs1108770 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2966.000000,2042.000000, 0.592252,0.407748, maf-5-some-pop,maf-5-all-pops 618 chr1 4400537 4400538 rs1108771 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 675.000000,4333.000000, 0.134784,0.865216, maf-5-some-pop,maf-5-all-pops 618 chr1 4400886 4400887 rs12046047 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4161.000000,847.000000, 0.830871,0.169129, maf-5-some-pop,maf-5-all-pops 618 chr1 4401045 4401046 rs112449417 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 618 chr1 4401359 4401360 rs11587192 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 618 chr1 4401449 4401450 rs11587563 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 A,G, 421.000000,4587.000000, 0.084065,0.915935, maf-5-some-pop 618 chr1 4401509 4401510 rs115160848 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 56.000000,4952.000000, 0.011182,0.988818, maf-5-some-pop,maf-5-all-pops 618 chr1 4401768 4401769 rs12138895 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 932.000000,4076.000000, 0.186102,0.813898, maf-5-some-pop,maf-5-all-pops 618 chr1 4402130 4402131 rs11810282 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4895.000000,113.000000, 0.977436,0.022564, 618 chr1 4402308 4402309 rs115580534 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 618 chr1 4402413 4402414 rs570100 0 - C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4402518 4402519 rs12043659 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1097.000000,3911.000000, 0.219050,0.780950, maf-5-some-pop,maf-5-all-pops 618 chr1 4402552 4402553 rs112435862 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 536.000000,4472.000000, 0.107029,0.892971, maf-5-some-pop,maf-5-all-pops 618 chr1 4402713 4402714 rs10915517 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,AFFY,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop 618 chr1 4402851 4402852 rs590537 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4075.000000,933.000000, 0.813698,0.186302, maf-5-some-pop,maf-5-all-pops 618 chr1 4403046 4403047 rs601798 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4074.000000,934.000000, 0.813498,0.186502, maf-5-some-pop,maf-5-all-pops 618 chr1 4403518 4403519 rs114537799 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,maf-5-all-pops 618 chr1 4403525 4403526 rs115087060 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,maf-5-all-pops 618 chr1 4403526 4403527 rs114023934 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4056.000000,952.000000, 0.809904,0.190096, maf-5-some-pop,maf-5-all-pops 618 chr1 4403560 4403561 rs372758146 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 4064.000000,944.000000, 0.811502,0.188498, 618 chr1 4403564 4403570 rs200349759 0 + CCCCTC CCCCTC -/CCCCTC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,CCCCTC, 940.000000,4068.000000, 0.187700,0.812300, 618 chr1 4403591 4403591 rs564675032 0 + - - -/CT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,CT, 4075.000000,933.000000, 0.813698,0.186302, 618 chr1 4403637 4403638 rs11809879 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,CSHL-HAPMAP,EVA-GONL,SSAHASNP,SSMP, 2 A,G, 1125.000000,3883.000000, 0.224641,0.775359, 618 chr1 4403642 4403648 rs201061289 0 + CCCTCT CCCTCT -/CCCTCT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CCCTCT, 840.000000,4168.000000, 0.167732,0.832268, 618 chr1 4403689 4403690 rs370398537 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BILGI_BIOE, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 618 chr1 4403777 4403778 rs604892 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4076.000000,932.000000, 0.813898,0.186102, maf-5-some-pop,maf-5-all-pops 618 chr1 4404218 4404219 rs6685851 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3874.000000,1134.000000, 0.773562,0.226438, maf-5-some-pop,maf-5-all-pops 618 chr1 4404755 4404756 rs619641 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 G,T, 4046.000000,962.000000, 0.807907,0.192093, maf-5-some-pop,maf-5-all-pops 618 chr1 4405101 4405102 rs17409380 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN, 2 G,T, 51.000000,4957.000000, 0.010184,0.989816, 618 chr1 4405151 4405152 rs502475 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 963.000000,4045.000000, 0.192292,0.807708, maf-5-some-pop,maf-5-all-pops 618 chr1 4405219 4405220 rs115780076 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 618 chr1 4405247 4405248 rs116155882 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4824.000000,184.000000, 0.963259,0.036741, maf-5-some-pop,maf-5-all-pops 618 chr1 4405430 4405431 rs12046694 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1117.000000,3891.000000, 0.223043,0.776957, maf-5-some-pop,maf-5-all-pops 618 chr1 4405495 4405496 rs656035 0 - G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4405833 4405834 rs34941358 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 618 chr1 4405997 4405998 rs10799228 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1098.000000,3910.000000, 0.219249,0.780751, maf-5-some-pop 618 chr1 4406156 4406157 rs12046915 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 850.000000,4158.000000, 0.169728,0.830272, maf-5-some-pop,maf-5-all-pops 618 chr1 4406234 4406235 rs646425 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2073.000000,2935.000000, 0.413938,0.586062, maf-5-some-pop,maf-5-all-pops 618 chr1 4406878 4406879 rs12141636 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop,maf-5-all-pops 618 chr1 4407761 4407762 rs111389459 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 618 chr1 4408074 4408075 rs12139755 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 G,T, 4626.000000,382.000000, 0.923722,0.076278, maf-5-some-pop 618 chr1 4408141 4408142 rs115782406 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 143.000000,4865.000000, 0.028554,0.971446, 618 chr1 4408174 4408175 rs138184480 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 51.000000,4957.000000, 0.010184,0.989816, 618 chr1 4408319 4408320 rs72631077 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSMP, 2 C,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop 618 chr1 4408337 4408338 rs76695515 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4838.000000,170.000000, 0.966054,0.033946, 618 chr1 4408439 4408440 rs79099871 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop,maf-5-all-pops 618 chr1 4409011 4409012 rs115392545 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 618 chr1 4409251 4409252 rs72631078 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,C, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,maf-5-all-pops 618 chr1 4409442 4409443 rs71640922 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 837.000000,4171.000000, 0.167133,0.832867, maf-5-some-pop,maf-5-all-pops 618 chr1 4409495 4409496 rs600933 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2090.000000,2918.000000, 0.417332,0.582668, maf-5-some-pop,maf-5-all-pops 618 chr1 4410125 4410126 rs7541457 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4865.000000,143.000000, 0.971446,0.028554, 618 chr1 4410210 4410211 rs571639 0 - C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4410386 4410386 rs5772152 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,A, 4045.000000,963.000000, 0.807708,0.192292, 618 chr1 4410445 4410445 rs71580258 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,SSMP, 2 -,A, 4126.000000,882.000000, 0.823882,0.176118, 618 chr1 4410486 4410487 rs72631079 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4213.000000,795.000000, 0.841254,0.158746, maf-5-some-pop 618 chr1 4411305 4411306 rs629569 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 964.000000,4044.000000, 0.192492,0.807508, maf-5-some-pop,maf-5-all-pops 618 chr1 4411625 4411626 rs114295570 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 G,T, 57.000000,4951.000000, 0.011382,0.988618, 618 chr1 4412601 4412607 rs146171584 0 + AAAGAA AAAGAA -/AAAGAA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,AAAGAA, 1016.000000,3992.000000, 0.202875,0.797125, 618 chr1 4412613 4412614 rs371431384 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSIP,TISHKOFF, 2 A,G, 4826.000000,182.000000, 0.963658,0.036342, 618 chr1 4412841 4412842 rs115914607 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 4826.000000,182.000000, 0.963658,0.036342, maf-5-some-pop,maf-5-all-pops 618 chr1 4413392 4413393 rs12023948 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4099.000000,909.000000, 0.818490,0.181510, maf-5-some-pop,maf-5-all-pops 618 chr1 4413445 4413446 rs79442777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4614.000000,394.000000, 0.921326,0.078674, maf-5-some-pop,maf-5-all-pops 618 chr1 4413679 4413680 rs7544853 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 141.000000,4867.000000, 0.028155,0.971845, maf-5-some-pop 618 chr1 4413786 4413787 rs7515982 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 618 chr1 4413886 4413887 rs7513320 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,C, 4866.000000,142.000000, 0.971645,0.028355, 618 chr1 4414563 4414564 rs115485348 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, maf-5-some-pop,maf-5-all-pops 618 chr1 4414667 4414668 rs72631080 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 67.000000,4941.000000, 0.013379,0.986621, 618 chr1 4414937 4414938 rs17409771 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,C, 394.000000,4614.000000, 0.078674,0.921326, maf-5-some-pop 618 chr1 4414959 4414960 rs111887661 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 618 chr1 4415156 4415156 rs570879639 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 2914.000000,2094.000000, 0.581869,0.418131, 618 chr1 4415501 4415502 rs2926486 0 - A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4415603 4415604 rs112540666 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 618 chr1 4415885 4415886 rs12064082 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop 618 chr1 4416101 4416102 rs75142487 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 375.000000,4633.000000, 0.074880,0.925120, maf-5-some-pop,maf-5-all-pops 618 chr1 4416376 4416378 rs35864764 0 + TC TC -/TC genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,ABI,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TC, 1484.000000,3524.000000, 0.296326,0.703674, 618 chr1 4416604 4416605 rs115080032 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 618 chr1 4416809 4416810 rs116056788 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 618 chr1 4417175 4417175 rs71580261 0 + - - -/AGAGAGAC genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,HUMANGENOME_JCVI,LUNTER, 2 -,AGAGAGAC, 3241.000000,1767.000000, 0.647165,0.352835, 618 chr1 4417182 4417183 rs540420554 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 683.000000,4325.000000, 0.136382,0.863618, 618 chr1 4417259 4417261 rs35907112 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,ABI,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,AG, 697.000000,4311.000000, 0.139177,0.860823, 618 chr1 4417545 4417546 rs138319601 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 618 chr1 4417733 4417734 rs12048162 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1163.000000,3845.000000, 0.232228,0.767772, maf-5-some-pop,maf-5-all-pops 618 chr1 4417960 4417961 rs12022854 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3905.000000,1103.000000, 0.779752,0.220248, maf-5-some-pop,maf-5-all-pops 618 chr1 4418318 4418319 rs16838790 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4202.000000,806.000000, 0.839058,0.160942, maf-5-some-pop,maf-5-all-pops 618 chr1 4418666 4418667 rs79461685 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 283.000000,4725.000000, 0.056510,0.943490, maf-5-some-pop,maf-5-all-pops 618 chr1 4419070 4419071 rs6691176 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 806.000000,4202.000000, 0.160942,0.839058, maf-5-some-pop,maf-5-all-pops 618 chr1 4419904 4419905 rs102083 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 A,T, 3304.000000,1704.000000, 0.659744,0.340256, maf-5-some-pop,maf-5-all-pops 618 chr1 4419953 4419954 rs102085 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1702.000000,3306.000000, 0.339856,0.660144, maf-5-some-pop,maf-5-all-pops 618 chr1 4419996 4419997 rs17410050 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 3575.000000,1433.000000, 0.713858,0.286142, maf-5-some-pop,maf-5-all-pops 618 chr1 4420211 4420212 rs682958 0 - G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4420287 4420288 rs75186996 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 347.000000,4661.000000, 0.069289,0.930711, maf-5-some-pop,maf-5-all-pops 618 chr1 4420508 4420509 rs12025694 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop,maf-5-all-pops 618 chr1 4420878 4420879 rs61155809 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 A,T, 4944.000000,64.000000, 0.987220,0.012780, 618 chr1 4420919 4420920 rs187098527 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 618 chr1 4420945 4420946 rs78487909 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4661.000000,347.000000, 0.930711,0.069289, maf-5-some-pop,maf-5-all-pops 618 chr1 4421032 4421033 rs67605444 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4154.000000,854.000000, 0.829473,0.170527, maf-5-some-pop,maf-5-all-pops 618 chr1 4421359 4421360 rs76200659 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 432.000000,4576.000000, 0.086262,0.913738, maf-5-some-pop,maf-5-all-pops 618 chr1 4421810 4421811 rs56216403 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4168.000000,840.000000, 0.832268,0.167732, maf-5-some-pop,maf-5-all-pops 618 chr1 4422005 4422006 rs56376431 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,HGSV,SSMP, 2 A,G, 840.000000,4168.000000, 0.167732,0.832268, maf-5-some-pop,maf-5-all-pops 618 chr1 4422035 4422036 rs10799230 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,G, 4715.000000,293.000000, 0.941494,0.058506, maf-5-some-pop,maf-5-all-pops 618 chr1 4422145 4422146 rs56162804 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4170.000000,838.000000, 0.832668,0.167332, maf-5-some-pop,maf-5-all-pops 618 chr1 4422169 4422170 rs55838104 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4170.000000,838.000000, 0.832668,0.167332, maf-5-some-pop,maf-5-all-pops 618 chr1 4422231 4422232 rs76286014 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop,maf-5-all-pops 618 chr1 4422484 4422485 rs12024911 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop,maf-5-all-pops 618 chr1 4422584 4422585 rs76892396 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 329.000000,4679.000000, 0.065695,0.934305, maf-5-some-pop,maf-5-all-pops 618 chr1 4422677 4422678 rs12403556 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4220.000000,788.000000, 0.842652,0.157348, maf-5-some-pop,maf-5-all-pops 618 chr1 4422682 4422683 rs12404034 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4165.000000,843.000000, 0.831669,0.168331, maf-5-some-pop 618 chr1 4422748 4422749 rs12404038 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4163.000000,845.000000, 0.831270,0.168730, maf-5-some-pop,maf-5-all-pops 618 chr1 4422873 4422874 rs74050733 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop,maf-5-all-pops 618 chr1 4422878 4422879 rs12404366 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 845.000000,4163.000000, 0.168730,0.831270, maf-5-some-pop,maf-5-all-pops 618 chr1 4422952 4422953 rs114030805 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 618 chr1 4422979 4422980 rs75425168 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 239.000000,4769.000000, 0.047724,0.952276, maf-5-some-pop,maf-5-all-pops 618 chr1 4423029 4423030 rs79426491 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4694.000000,314.000000, 0.937300,0.062700, maf-5-some-pop,maf-5-all-pops 618 chr1 4423055 4423056 rs12402553 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 845.000000,4163.000000, 0.168730,0.831270, maf-5-some-pop,maf-5-all-pops 618 chr1 4423060 4423061 rs6656193 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 856.000000,4152.000000, 0.170927,0.829073, maf-5-some-pop,maf-5-all-pops 618 chr1 4423268 4423269 rs111966012 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 618 chr1 4423271 4423272 rs6666204 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4152.000000,856.000000, 0.829073,0.170927, maf-5-some-pop,maf-5-all-pops 618 chr1 4423372 4423373 rs16838809 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,C, 70.000000,4938.000000, 0.013978,0.986022, maf-5-some-pop 618 chr1 4423551 4423551 rs150514698 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 4166.000000,842.000000, 0.831869,0.168131, 618 chr1 4423577 4423578 rs16838810 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4221.000000,787.000000, 0.842851,0.157149, maf-5-some-pop 618 chr1 4423629 4423630 rs55944275 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 853.000000,4155.000000, 0.170327,0.829673, maf-5-some-pop,maf-5-all-pops 618 chr1 4423800 4423801 rs115848258 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 618 chr1 4423896 4423897 rs58351078 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,HGSV,SSMP, 2 A,G, 850.000000,4158.000000, 0.169728,0.830272, maf-5-some-pop,maf-5-all-pops 618 chr1 4424067 4424068 rs61676533 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4165.000000,843.000000, 0.831669,0.168331, maf-5-some-pop,maf-5-all-pops 618 chr1 4424114 4424115 rs16838812 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4165.000000,843.000000, 0.831669,0.168331, maf-5-some-pop 618 chr1 4424201 4424202 rs56775247 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4176.000000,832.000000, 0.833866,0.166134, maf-5-some-pop,maf-5-all-pops 618 chr1 4424241 4424242 rs57599092 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4165.000000,843.000000, 0.831669,0.168331, maf-5-some-pop,maf-5-all-pops 618 chr1 4424295 4424295 rs148753351 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,G, 4715.000000,293.000000, 0.941494,0.058506, 618 chr1 4424439 4424440 rs141790891 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, 618 chr1 4424503 4424504 rs143774402 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 A,G, 4847.000000,161.000000, 0.967851,0.032149, 618 chr1 4424538 4424539 rs11804096 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,CSHL-HAPMAP,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 837.000000,4171.000000, 0.167133,0.832867, 618 chr1 4424765 4424766 rs11803736 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4040.000000,968.000000, 0.806709,0.193291, 618 chr1 4424832 4424833 rs11801800 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 979.000000,4029.000000, 0.195487,0.804513, maf-5-some-pop,maf-5-all-pops 618 chr1 4425078 4425079 rs12729994 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,C, 979.000000,4029.000000, 0.195487,0.804513, maf-5-some-pop,maf-5-all-pops 618 chr1 4425079 4425080 rs76952170 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 342.000000,4666.000000, 0.068291,0.931709, maf-5-some-pop,maf-5-all-pops 618 chr1 4425175 4425176 rs16838815 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4292.000000,716.000000, 0.857029,0.142971, maf-5-some-pop 618 chr1 4425244 4425245 rs74050735 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,maf-5-all-pops 618 chr1 4425254 4425255 rs12742617 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 208.000000,4800.000000, 0.041533,0.958466, maf-5-some-pop,maf-5-all-pops 618 chr1 4425647 4425648 rs34012704 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop,maf-5-all-pops 618 chr1 4425722 4425723 rs66527973 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 968.000000,4040.000000, 0.193291,0.806709, maf-5-some-pop,maf-5-all-pops 618 chr1 4425846 4425847 rs12405082 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4029.000000,979.000000, 0.804513,0.195487, maf-5-some-pop,maf-5-all-pops 618 chr1 4425875 4425876 rs12404603 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4569.000000,439.000000, 0.912340,0.087660, maf-5-some-pop 618 chr1 4425889 4425890 rs112194384 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,T, 92.000000,4916.000000, 0.018371,0.981629, 618 chr1 4426026 4426027 rs12403671 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 967.000000,4041.000000, 0.193091,0.806909, maf-5-some-pop,maf-5-all-pops 618 chr1 4426084 4426085 rs12404619 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4045.000000,963.000000, 0.807708,0.192292, maf-5-some-pop,maf-5-all-pops 618 chr1 4426358 4426359 rs78458484 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 206.000000,4802.000000, 0.041134,0.958866, maf-5-some-pop,maf-5-all-pops 618 chr1 4426477 4426478 rs16838819 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4038.000000,970.000000, 0.806310,0.193690, maf-5-some-pop,maf-5-all-pops 618 chr1 4426690 4426691 rs112519932 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4916.000000,92.000000, 0.981629,0.018371, maf-5-some-pop,maf-5-all-pops 618 chr1 4426806 4426807 rs74050736 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,C, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 618 chr1 4427215 4427216 rs74050737 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop,maf-5-all-pops 618 chr1 4427299 4427299 rs141224174 0 + - - -/TTGTC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,TTGTC, 4949.000000,59.000000, 0.988219,0.011781, 618 chr1 4427391 4427392 rs114177296 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 618 chr1 4427398 4427399 rs72631089 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop,maf-5-all-pops 618 chr1 4427522 4427523 rs12119772 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP, 2 A,G, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop 618 chr1 4427561 4427562 rs7519313 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4289.000000,719.000000, 0.856430,0.143570, maf-5-some-pop 618 chr1 4427867 4427868 rs34472761 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 623.000000,4385.000000, 0.124401,0.875599, maf-5-some-pop,maf-5-all-pops 618 chr1 4428338 4428339 rs114620483 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 618 chr1 4428583 4428584 rs115735704 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 618 chr1 4428594 4428595 rs12029905 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4298.000000,710.000000, 0.858227,0.141773, maf-5-some-pop 618 chr1 4429625 4429628 rs531097628 0 + TGA TGA -/TGA genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TGA, 58.000000,4950.000000, 0.011582,0.988419, 618 chr1 4429640 4429649 rs71580263 0 + TGGTGATGG TGGTGATGG -/TGGTGATGG genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER, 2 -,TGGTGATGG, 635.000000,4373.000000, 0.126797,0.873203, 618 chr1 4429643 4429644 rs553941963 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 59.000000,4949.000000, 0.011781,0.988219, 618 chr1 4429647 4429648 rs577190793 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 618 chr1 4429871 4429872 rs72631092 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,SSMP, 2 G,T, 4674.000000,334.000000, 0.933307,0.066693, maf-5-some-pop,maf-5-all-pops 618 chr1 4430349 4430350 rs12026935 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1278.000000,3730.000000, 0.255192,0.744808, maf-5-some-pop 618 chr1 4430707 4430708 rs74050738 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 618 chr1 4430776 4430777 rs71640923 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,T, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop,maf-5-all-pops 618 chr1 4431130 4431131 rs57249309 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 720.000000,4288.000000, 0.143770,0.856230, 618 chr1 4431314 4431315 rs12032182 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3656.000000,1352.000000, 0.730032,0.269968, maf-5-some-pop,maf-5-all-pops 618 chr1 4431570 4431571 rs12028738 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 722.000000,4286.000000, 0.144169,0.855831, maf-5-some-pop 618 chr1 4431622 4431623 rs12750862 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 902.000000,4106.000000, 0.180112,0.819888, maf-5-some-pop,maf-5-all-pops 618 chr1 4431665 4431666 rs116227922 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 618 chr1 4431703 4431704 rs12031615 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3714.000000,1294.000000, 0.741613,0.258387, maf-5-some-pop,maf-5-all-pops 618 chr1 4431908 4431909 rs12032997 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3713.000000,1295.000000, 0.741414,0.258586, maf-5-some-pop,maf-5-all-pops 618 chr1 4431976 4431977 rs12127114 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,SC_SNP, 2 C,T, 4857.000000,151.000000, 0.969848,0.030152, maf-5-some-pop 618 chr1 4432120 4432121 rs114680774 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 618 chr1 4432149 4432150 rs72631098 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,JMKIDD_LAB, 2 G,T, 4675.000000,333.000000, 0.933506,0.066494, 618 chr1 4432150 4432151 rs72631100 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,JMKIDD_LAB, 2 C,T, 332.000000,4676.000000, 0.066294,0.933706, 618 chr1 4432464 4432465 rs67631757 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1293.000000,3715.000000, 0.258187,0.741813, maf-5-some-pop,maf-5-all-pops 618 chr1 4432476 4432477 rs115988037 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 618 chr1 4432539 4432540 rs74050740 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 618 chr1 4432851 4432852 rs67295876 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1292.000000,3716.000000, 0.257987,0.742013, maf-5-some-pop,maf-5-all-pops 618 chr1 4432870 4432871 rs74050742 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA-UK,SSMP, 2 C,T, 3715.000000,1293.000000, 0.741813,0.258187, maf-5-some-pop,maf-5-all-pops 618 chr1 4432998 4432999 rs72631101 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3729.000000,1279.000000, 0.744609,0.255391, maf-5-some-pop,maf-5-all-pops 618 chr1 4433175 4433179 rs138587059 0 + CACT CACT -/CACT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CACT, 1350.000000,3658.000000, 0.269569,0.730431, 618 chr1 4433289 4433290 rs72631102 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,G, 4674.000000,334.000000, 0.933307,0.066693, maf-5-some-pop,maf-5-all-pops 618 chr1 4433340 4433341 rs148056944 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 618 chr1 4433514 4433515 rs59712167 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3654.000000,1354.000000, 0.729633,0.270367, maf-5-some-pop,maf-5-all-pops 618 chr1 4433587 4433588 rs115287548 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 618 chr1 4433596 4433597 rs77530491 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 C,T, 223.000000,4785.000000, 0.044529,0.955471, maf-5-some-pop,maf-5-all-pops 618 chr1 4433612 4433613 rs77234859 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4383.000000,625.000000, 0.875200,0.124800, maf-5-some-pop,maf-5-all-pops 618 chr1 4434008 4434008 rs34013096 0 + - - -/CCAT/CCATCCATCCAT genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,ABI,BL,LUNTER, 3 -,CCAT,CCATCCATCCAT, 3271.000000,1297.000000,440.000000, 0.653155,0.258986,0.087859, 618 chr1 4434181 4434182 rs72632704 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 556.000000,4452.000000, 0.111022,0.888978, maf-5-some-pop,maf-5-all-pops 618 chr1 4434244 4434245 rs55902426 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1293.000000,3715.000000, 0.258187,0.741813, maf-5-some-pop,maf-5-all-pops 618 chr1 4434294 4434295 rs61283285 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1292.000000,3716.000000, 0.257987,0.742013, maf-5-some-pop,maf-5-all-pops 618 chr1 4434323 4434324 rs57575485 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2754.000000,2254.000000, 0.549920,0.450080, maf-5-some-pop,maf-5-all-pops 618 chr1 4434682 4434683 rs56122611 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 722.000000,4286.000000, 0.144169,0.855831, maf-5-some-pop,maf-5-all-pops 618 chr1 4434866 4434867 rs56999324 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1278.000000,3730.000000, 0.255192,0.744808, maf-5-some-pop,maf-5-all-pops 618 chr1 4434943 4434944 rs35066664 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3730.000000,1278.000000, 0.744808,0.255192, maf-5-some-pop,maf-5-all-pops 618 chr1 4434975 4434976 rs115744410 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 618 chr1 4435099 4435100 rs58869499 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4840.000000,168.000000, 0.966454,0.033546, maf-5-some-pop,maf-5-all-pops 618 chr1 4435159 4435160 rs114765794 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 74.000000,4934.000000, 0.014776,0.985224, maf-5-some-pop,maf-5-all-pops 618 chr1 4435400 4435401 rs79716136 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop,maf-5-all-pops 618 chr1 4435436 4435437 rs72632711 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop,maf-5-all-pops 618 chr1 4435487 4435488 rs116680355 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 618 chr1 4435521 4435522 rs72632712 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 334.000000,4674.000000, 0.066693,0.933307, maf-5-some-pop,maf-5-all-pops 618 chr1 4435640 4435641 rs74728654 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop,maf-5-all-pops 618 chr1 4435845 4435846 rs74050746 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop,maf-5-all-pops 618 chr1 4436195 4436196 rs78022540 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL, 2 G,T, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 618 chr1 4436224 4436224 rs150086068 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,G, 4840.000000,168.000000, 0.966454,0.033546, 618 chr1 4436284 4436285 rs2926483 0 - T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4436309 4436309 rs536819731 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 3563.000000,1445.000000, 0.711462,0.288538, 618 chr1 4436356 4436357 rs72632714 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4496.000000,512.000000, 0.897764,0.102236, maf-5-some-pop,maf-5-all-pops 618 chr1 4436392 4436393 rs150197903 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4497.000000,511.000000, 0.897963,0.102037, 618 chr1 4436401 4436402 rs138697695 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 511.000000,4497.000000, 0.102037,0.897963, 618 chr1 4436483 4436484 rs143735925 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4486.000000,522.000000, 0.895767,0.104233, 618 chr1 4436665 4436666 rs55882564 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4297.000000,711.000000, 0.858027,0.141973, maf-5-some-pop,maf-5-all-pops 618 chr1 4436907 4436908 rs60113165 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1107.000000,3901.000000, 0.221046,0.778954, maf-5-some-pop,maf-5-all-pops 618 chr1 4437128 4437129 rs10915519 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1041.000000,3967.000000, 0.207867,0.792133, maf-5-some-pop 618 chr1 4437145 4437146 rs74050750 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 G,T, 4797.000000,211.000000, 0.957867,0.042133, maf-5-some-pop,maf-5-all-pops 618 chr1 4437517 4437518 rs11805156 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop,maf-5-all-pops 618 chr1 4437563 4437564 rs11804791 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4798.000000,210.000000, 0.958067,0.041933, maf-5-some-pop,maf-5-all-pops 618 chr1 4437653 4437654 rs74050752 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 231.000000,4777.000000, 0.046126,0.953874, maf-5-some-pop,maf-5-all-pops 618 chr1 4437829 4437830 rs74050753 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 260.000000,4748.000000, 0.051917,0.948083, maf-5-some-pop,maf-5-all-pops 618 chr1 4437895 4437896 rs16838828 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,PERLEGEN,TISHKOFF, 2 C,T, 4798.000000,210.000000, 0.958067,0.041933, maf-5-some-pop 618 chr1 4437933 4437934 rs74050754 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 C,G, 210.000000,4798.000000, 0.041933,0.958067, maf-5-some-pop,maf-5-all-pops 618 chr1 4438301 4438302 rs74050755 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,maf-5-all-pops 618 chr1 4438892 4438893 rs113255697 0 + T T A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,T, 67.000000,4941.000000, 0.013379,0.986621, 618 chr1 4439047 4439048 rs736867 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 692.000000,4316.000000, 0.138179,0.861821, maf-5-some-pop 618 chr1 4439113 4439113 rs540674385 0 + - - -/AGG/AGGAGGAGG/AGGAGGAGGAGG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 4 -,AGG,AGGAGGAGG,AGGAGGAGGAGG, 4140.000000,789.000000,11.000000,68.000000, 0.826677,0.157548,0.002196,0.013578, rs-cluster-nonoverlapping-alleles 618 chr1 4439173 4439174 rs77769322 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,ILLUMINA, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 618 chr1 4439530 4439531 rs74050757 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop,maf-5-all-pops 618 chr1 4439693 4439694 rs72856593 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4721.000000,287.000000, 0.942692,0.057308, maf-5-some-pop,maf-5-all-pops 618 chr1 4439750 4439751 rs74050760 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4752.000000,256.000000, 0.948882,0.051118, maf-5-some-pop,maf-5-all-pops 618 chr1 4439751 4439752 rs116699313 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 618 chr1 4439816 4439817 rs2926482 0 - C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4440238 4440239 rs72856594 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 618 chr1 4440281 4440282 rs75569072 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 277.000000,4731.000000, 0.055312,0.944688, maf-5-some-pop,maf-5-all-pops 618 chr1 4440389 4440390 rs113964851 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,T, 277.000000,4731.000000, 0.055312,0.944688, 618 chr1 4440523 4440524 rs112188872 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 271.000000,4737.000000, 0.054113,0.945887, 618 chr1 4440539 4440540 rs111742641 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4731.000000,277.000000, 0.944688,0.055312, 618 chr1 4440597 4440598 rs16838830 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 277.000000,4731.000000, 0.055312,0.944688, maf-5-some-pop,maf-5-all-pops 618 chr1 4440620 4440621 rs72632720 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop,maf-5-all-pops 618 chr1 4440636 4440637 rs76957480 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 618 chr1 4440730 4440731 rs74050762 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 618 chr1 4440911 4440912 rs60197443 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4731.000000,277.000000, 0.944688,0.055312, maf-5-some-pop,maf-5-all-pops 618 chr1 4441451 4441452 rs112926418 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4412.000000,596.000000, 0.880990,0.119010, maf-5-some-pop,maf-5-all-pops 618 chr1 4441461 4441462 rs112425643 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 618 chr1 4441516 4441517 rs144379770 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4412.000000,596.000000, 0.880990,0.119010, 618 chr1 4441572 4441573 rs58344248 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3827.000000,1181.000000, 0.764177,0.235823, maf-5-some-pop,maf-5-all-pops 618 chr1 4441657 4441658 rs12037638 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4167.000000,841.000000, 0.832069,0.167931, maf-5-some-pop,maf-5-all-pops 618 chr1 4441666 4441667 rs116908448 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 618 chr1 4441859 4441860 rs12033497 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 841.000000,4167.000000, 0.167931,0.832069, 618 chr1 4441948 4441949 rs12036357 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4166.000000,842.000000, 0.831869,0.168131, maf-5-some-pop,maf-5-all-pops 618 chr1 4442417 4442418 rs6697506 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4167.000000,841.000000, 0.832069,0.167931, maf-5-some-pop 618 chr1 4442452 4442453 rs6688022 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop,maf-5-all-pops 618 chr1 4442486 4442487 rs6697594 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4168.000000,840.000000, 0.832268,0.167732, maf-5-some-pop 618 chr1 4442541 4442542 rs1813268 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1370.000000,3638.000000, 0.273562,0.726438, maf-5-some-pop,maf-5-all-pops 618 chr1 4442588 4442589 rs12039428 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 841.000000,4167.000000, 0.167931,0.832069, 618 chr1 4442694 4442695 rs12039461 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1106.000000,3902.000000, 0.220847,0.779153, 618 chr1 4442738 4442739 rs57577600 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 618 chr1 4442751 4442752 rs2009876 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3638.000000,1370.000000, 0.726438,0.273562, maf-5-some-pop,maf-5-all-pops 618 chr1 4442791 4442792 rs72858209 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 618 chr1 4442841 4442842 rs61393888 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop,maf-5-all-pops 618 chr1 4442852 4442853 rs2009885 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3638.000000,1370.000000, 0.726438,0.273562, maf-5-some-pop,maf-5-all-pops 618 chr1 4442910 4442913 rs56799661 0 + CCT CCT -/CCT genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,CCT, 841.000000,4167.000000, 0.167931,0.832069, 618 chr1 4442939 4442940 rs72632727 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 339.000000,4669.000000, 0.067692,0.932308, maf-5-some-pop,maf-5-all-pops 618 chr1 4442946 4442947 rs16838843 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4166.000000,842.000000, 0.831869,0.168131, maf-5-some-pop 618 chr1 4443092 4443093 rs112346490 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 618 chr1 4443304 4443304 rs200714924 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,A, 4912.000000,96.000000, 0.980831,0.019169, 618 chr1 4443480 4443481 rs72858212 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,C, 4168.000000,840.000000, 0.832268,0.167732, maf-5-some-pop,maf-5-all-pops 618 chr1 4443491 4443492 rs61660310 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop,maf-5-all-pops 618 chr1 4443758 4443759 rs16838847 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 618 chr1 4444184 4444185 rs924011 0 - T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 618 chr1 4444414 4444415 rs59150937 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4315.000000,693.000000, 0.861621,0.138379, maf-5-some-pop,maf-5-all-pops 618 chr1 4444538 4444539 rs239339 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 4307.000000,701.000000, 0.860024,0.139976, maf-5-some-pop,microattr-tpa 618 chr1 4444705 4444706 rs349413 0 + C C A/C genomic single unknown 0 0 unknown exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 3811.000000,1197.000000, 0.760982,0.239018, maf-5-some-pop 618 chr1 4444951 4444952 rs12041475 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1181.000000,3827.000000, 0.235823,0.764177, maf-5-some-pop,maf-5-all-pops 618 chr1 4445007 4445008 rs12036571 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop,maf-5-all-pops 618 chr1 4445152 4445153 rs72858221 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 860.000000,4148.000000, 0.171725,0.828275, maf-5-some-pop,maf-5-all-pops 618 chr1 4445177 4445178 rs164598 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3811.000000,1197.000000, 0.760982,0.239018, maf-5-some-pop,maf-5-all-pops 618 chr1 4445191 4445192 rs12755316 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 C,T, 113.000000,4895.000000, 0.022564,0.977436, 618 chr1 4445223 4445224 rs12040704 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4167.000000,841.000000, 0.832069,0.167931, maf-5-some-pop,maf-5-all-pops 618 chr1 4445337 4445338 rs12036668 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1369.000000,3639.000000, 0.273363,0.726637, maf-5-some-pop,maf-5-all-pops 618 chr1 4445470 4445471 rs72632731 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop,maf-5-all-pops 618 chr1 4445704 4445705 rs12041514 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4186.000000,822.000000, 0.835863,0.164137, maf-5-some-pop,maf-5-all-pops 618 chr1 4445723 4445724 rs12042317 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 822.000000,4186.000000, 0.164137,0.835863, maf-5-some-pop 618 chr1 4445872 4445873 rs72632733 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4670.000000,338.000000, 0.932508,0.067492, maf-5-some-pop,maf-5-all-pops 618 chr1 4445890 4445891 rs10915520 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 821.000000,4187.000000, 0.163938,0.836062, maf-5-some-pop,maf-5-all-pops 618 chr1 4445941 4445942 rs113932089 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 618 chr1 4446120 4446121 rs72858228 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 618 chr1 4446519 4446520 rs55901114 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,maf-5-all-pops 618 chr1 4446921 4446922 rs66497517 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1355.000000,3653.000000, 0.270567,0.729433, maf-5-some-pop,maf-5-all-pops 618 chr1 4446995 4446996 rs7418714 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF, 2 G,T, 1544.000000,3464.000000, 0.308307,0.691693, maf-5-some-pop 618 chr1 4447231 4447232 rs1459698 0 + T T G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop 618 chr1 4447320 4447321 rs1459699 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3993.000000,1015.000000, 0.797324,0.202676, maf-5-some-pop 618 chr1 4447348 4447349 rs12037541 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3992.000000,1016.000000, 0.797125,0.202875, maf-5-some-pop 618 chr1 4447370 4447371 rs57629918 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,HGSV, 2 A,G, 4957.000000,51.000000, 0.989816,0.010184, 618 chr1 4447420 4447421 rs10915521 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1018.000000,3990.000000, 0.203275,0.796725, maf-5-some-pop 618 chr1 4447517 4447518 rs111529002 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,T, 67.000000,4941.000000, 0.013379,0.986621, maf-5-some-pop,maf-5-all-pops 618 chr1 4447650 4447651 rs11805017 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1016.000000,3992.000000, 0.202875,0.797125, maf-5-some-pop 618 chr1 4447730 4447731 rs4654526 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3522.000000,1486.000000, 0.703275,0.296725, maf-5-some-pop,maf-5-all-pops 618 chr1 4447746 4447747 rs11806957 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 3993.000000,1015.000000, 0.797324,0.202676, maf-5-some-pop 618 chr1 4447762 4447763 rs11807345 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1544.000000,3464.000000, 0.308307,0.691693, maf-5-some-pop 618 chr1 4447938 4447939 rs11806341 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1016.000000,3992.000000, 0.202875,0.797125, maf-5-some-pop 618 chr1 4448038 4448039 rs16838876 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop 618 chr1 4448199 4448200 rs16838882 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3993.000000,1015.000000, 0.797324,0.202676, maf-5-some-pop 618 chr1 4449073 4449074 rs1109048 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1016.000000,3992.000000, 0.202875,0.797125, maf-5-some-pop 618 chr1 4449128 4449129 rs1109046 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1530.000000,3478.000000, 0.305511,0.694489, maf-5-some-pop,maf-5-all-pops 618 chr1 4449203 4449204 rs72632736 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4690.000000,318.000000, 0.936502,0.063498, maf-5-some-pop,maf-5-all-pops 618 chr1 4449499 4449500 rs12040194 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop 618 chr1 4449587 4449588 rs12041091 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,maf-5-all-pops 618 chr1 4449615 4449616 rs12041094 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop,maf-5-all-pops 618 chr1 4449618 4449619 rs79003341 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 618 chr1 4449722 4449723 rs150846363 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 618 chr1 4449882 4449883 rs12041175 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,maf-5-all-pops 618 chr1 4450124 4450125 rs72858258 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 618 chr1 4450508 4450509 rs111456059 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 618 chr1 4450509 4450510 rs2199203 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3992.000000,1016.000000, 0.797125,0.202875, maf-5-some-pop 618 chr1 4450664 4450665 rs2199204 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1016.000000,3992.000000, 0.202875,0.797125, maf-5-some-pop,maf-5-all-pops 618 chr1 4450704 4450705 rs2199205 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 3993.000000,1015.000000, 0.797324,0.202676, maf-5-some-pop,maf-5-all-pops 618 chr1 4451080 4451081 rs12042157 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop 618 chr1 4451181 4451182 rs59270511 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,maf-5-all-pops 618 chr1 4451550 4451551 rs4654527 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop 618 chr1 4451564 4451565 rs4654528 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1000.000000,4008.000000, 0.199681,0.800319, maf-5-some-pop 618 chr1 4451725 4451726 rs115601422 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,maf-5-all-pops 618 chr1 4451847 4451848 rs11585123 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3510.000000,1498.000000, 0.700879,0.299121, 618 chr1 4452156 4452157 rs12040976 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 1000.000000,4008.000000, 0.199681,0.800319, maf-5-some-pop 618 chr1 4452318 4452319 rs112507355 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 618 chr1 4452359 4452360 rs76664177 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 618 chr1 4452375 4452376 rs72632740 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 324.000000,4684.000000, 0.064696,0.935304, maf-5-some-pop,maf-5-all-pops 618 chr1 4452396 4452397 rs627555 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3802.000000,1206.000000, 0.759185,0.240815, maf-5-some-pop,maf-5-all-pops 618 chr1 4452403 4452404 rs12043946 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SC_SNP,TISHKOFF, 2 A,T, 1015.000000,3993.000000, 0.202676,0.797324, 618 chr1 4452408 4452409 rs58441967 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,HGSV,LUNTER,SSMP, 2 -,A, 1015.000000,3993.000000, 0.202676,0.797324, 618 chr1 4452437 4452438 rs12041706 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 3995.000000,1013.000000, 0.797724,0.202276, maf-5-some-pop 618 chr1 4452454 4452455 rs12041711 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 3995.000000,1013.000000, 0.797724,0.202276, maf-5-some-pop,maf-5-all-pops 618 chr1 4452633 4452634 rs12043114 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3993.000000,1015.000000, 0.797324,0.202676, maf-5-some-pop 618 chr1 4452679 4452680 rs59562390 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1015.000000,3993.000000, 0.202676,0.797324, maf-5-some-pop,maf-5-all-pops 618 chr1 4453069 4453070 rs150752301 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,A, 152.000000,4856.000000, 0.030351,0.969649, 618 chr1 4453111 4453112 rs72632744 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop,maf-5-all-pops 618 chr1 4453232 4453233 rs7528145 0 + T T G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,TISHKOFF,WI_SSAHASNP, 2 G,T, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 618 chr1 4453235 4453236 rs60078446 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,HGSV,SSMP, 2 -,A, 1513.000000,3495.000000, 0.302117,0.697883, 618 chr1 4453296 4453297 rs114379871 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,maf-5-all-pops 618 chr1 4453465 4453466 rs7523383 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3510.000000,1498.000000, 0.700879,0.299121, maf-5-some-pop,maf-5-all-pops 618 chr1 4453786 4453787 rs1841234 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4141.000000,867.000000, 0.826877,0.173123, maf-5-some-pop 618 chr1 4454146 4454147 rs111286824 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 618 chr1 4454178 4454179 rs72632746 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4687.000000,321.000000, 0.935903,0.064097, maf-5-some-pop,maf-5-all-pops 618 chr1 4454179 4454180 rs349414 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 643.000000,4365.000000, 0.128395,0.871605, maf-5-some-pop 618 chr1 4454308 4454309 rs59753942 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 618 chr1 4454402 4454403 rs12040960 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1017.000000,3991.000000, 0.203075,0.796925, maf-5-some-pop 618 chr1 4454511 4454512 rs16838915 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 3419.000000,1589.000000, 0.682708,0.317292, maf-5-some-pop 618 chr1 4454648 4454649 rs61211728 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 618 chr1 4454784 4454785 rs72632749 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 4689.000000,319.000000, 0.936302,0.063698, maf-5-some-pop,maf-5-all-pops 618 chr1 4454886 4454887 rs117102019 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,C, 86.000000,4922.000000, 0.017173,0.982827, maf-5-some-pop,maf-5-all-pops 618 chr1 4454947 4454947 rs111958814 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,LUNTER,TISHKOFF, 2 -,A, 4857.000000,151.000000, 0.969848,0.030152, 618 chr1 4455042 4455043 rs72858294 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop,maf-5-all-pops 618 chr1 4455050 4455051 rs72858298 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4805.000000,203.000000, 0.959465,0.040535, maf-5-some-pop,maf-5-all-pops 618 chr1 4455070 4455071 rs113680262 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 618 chr1 4455102 4455103 rs72859703 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, 618 chr1 4455125 4455126 rs55703746 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 4387.000000,621.000000, 0.875998,0.124002, maf-5-some-pop,maf-5-all-pops 618 chr1 4455414 4455415 rs349415 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,G, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop,maf-5-all-pops 618 chr1 4455617 4455618 rs111646181 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,G, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 618 chr1 4455695 4455696 rs349416 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 2732.000000,2276.000000, 0.545527,0.454473, maf-5-some-pop,maf-5-all-pops 618 chr1 4455764 4455765 rs16838918 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, maf-5-some-pop 618 chr1 4455909 4455910 rs140584425 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4904.000000,104.000000, 0.979233,0.020767, 618 chr1 4455915 4455916 rs72859708 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 618 chr1 4456046 4456047 rs16838922 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 A,T, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop,maf-5-all-pops 618 chr1 4456132 4456133 rs10915522 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP, 2 A,G, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop 618 chr1 4456276 4456277 rs7521665 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1244.000000,3764.000000, 0.248403,0.751597, maf-5-some-pop 619 chr1 4457014 4457015 rs59144705 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,T, 56.000000,4952.000000, 0.011182,0.988818, 619 chr1 4457111 4457112 rs16838929 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 3948.000000,1060.000000, 0.788339,0.211661, maf-5-some-pop 619 chr1 4457222 4457223 rs59452188 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 619 chr1 4457843 4457844 rs10915523 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1056.000000,3952.000000, 0.210863,0.789137, maf-5-some-pop 619 chr1 4457991 4457992 rs10915524 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1057.000000,3951.000000, 0.211062,0.788938, maf-5-some-pop 619 chr1 4458104 4458105 rs72632752 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop,maf-5-all-pops 619 chr1 4458575 4458591 rs142535943 0 + GTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGT -/GTGTGTGTGTGTGTGT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GTGTGTGTGTGTGTGT, 2868.000000,2140.000000, 0.572684,0.427316, 619 chr1 4458721 4458722 rs12044775 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1057.000000,3951.000000, 0.211062,0.788938, maf-5-some-pop 619 chr1 4458813 4458814 rs12044808 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1057.000000,3951.000000, 0.211062,0.788938, maf-5-some-pop 619 chr1 4459048 4459049 rs12042555 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3953.000000,1055.000000, 0.789337,0.210663, maf-5-some-pop 619 chr1 4459226 4459227 rs60421043 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 619 chr1 4459316 4459317 rs78531899 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop,maf-5-all-pops 619 chr1 4459585 4459586 rs74049403 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 188.000000,4820.000000, 0.037540,0.962460, maf-5-some-pop,maf-5-all-pops 619 chr1 4459619 4459620 rs12043406 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3769.000000,1239.000000, 0.752596,0.247404, maf-5-some-pop 619 chr1 4459688 4459689 rs6679220 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1539.000000,3469.000000, 0.307308,0.692692, maf-5-some-pop,maf-5-all-pops,microattr-tpa 619 chr1 4459702 4459703 rs16838943 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3767.000000,1241.000000, 0.752196,0.247804, maf-5-some-pop 619 chr1 4459763 4459764 rs74049404 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 553.000000,4455.000000, 0.110423,0.889577, maf-5-some-pop,maf-5-all-pops 619 chr1 4459765 4459766 rs16838947 0 + G G C/G genomic single by-frequency,by-hapmap 0.115392 0.210667 unknown exact 1 1 PERLEGEN, 2 C,G, 15.000000,229.000000, 0.061475,0.938525, maf-5-some-pop,maf-5-all-pops 619 chr1 4460261 4460262 rs12043606 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3762.000000,1246.000000, 0.751198,0.248802, maf-5-some-pop 619 chr1 4460448 4460449 rs144605500 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP,TISHKOFF, 2 -,A, 610.000000,4398.000000, 0.121805,0.878195, 619 chr1 4460450 4460451 rs922113 0 + A A A/C genomic single by-frequency 0.236195 0.249619 unknown exact 1 1 TSC-CSHL, 2 A,C, 347.000000,55.000000, 0.863184,0.136816, maf-5-some-pop,maf-5-all-pops 619 chr1 4460479 4460480 rs349399 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2739.000000,2269.000000, 0.546925,0.453075, maf-5-some-pop,maf-5-all-pops 619 chr1 4460665 4460666 rs1870505 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1250.000000,3758.000000, 0.249601,0.750399, maf-5-some-pop 619 chr1 4460704 4460705 rs1870506 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1250.000000,3758.000000, 0.249601,0.750399, maf-5-some-pop 619 chr1 4460779 4460780 rs1870507 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 3772.000000,1236.000000, 0.753195,0.246805, maf-5-some-pop 619 chr1 4460815 4460816 rs55750624 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,A, 750.000000,4258.000000, 0.149760,0.850240, 619 chr1 4460842 4460843 rs12041747 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1227.000000,3781.000000, 0.245008,0.754992, maf-5-some-pop,maf-5-all-pops 619 chr1 4460900 4460901 rs74049406 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, maf-5-some-pop,maf-5-all-pops 619 chr1 4460964 4460965 rs56081339 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1493.000000,3515.000000, 0.298123,0.701877, maf-5-some-pop,maf-5-all-pops 619 chr1 4460987 4460988 rs189468 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4363.000000,645.000000, 0.871206,0.128794, maf-5-some-pop,maf-5-all-pops 619 chr1 4461001 4461002 rs12041810 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 876.000000,4132.000000, 0.174920,0.825080, maf-5-some-pop 619 chr1 4461064 4461065 rs72849131 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 1249.000000,3759.000000, 0.249401,0.750599, maf-5-some-pop 619 chr1 4461068 4461069 rs72849132 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1249.000000,3759.000000, 0.249401,0.750599, maf-5-some-pop 619 chr1 4461253 4461254 rs16838950 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1185.000000,3823.000000, 0.236621,0.763379, maf-5-some-pop 619 chr1 4461447 4461448 rs115199194 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop,maf-5-all-pops 619 chr1 4461532 4461533 rs4654531 0 + G G G/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3758.000000,1250.000000, 0.750399,0.249601, maf-5-some-pop 619 chr1 4461577 4461578 rs4654532 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 1185.000000,3823.000000, 0.236621,0.763379, maf-5-some-pop 619 chr1 4461713 4461714 rs114960557 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 619 chr1 4462263 4462263 rs112857776 0 + - - -/AATTA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,AATTA, 2456.000000,2552.000000, 0.490415,0.509585, 619 chr1 4462385 4462386 rs12048690 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1254.000000,3754.000000, 0.250399,0.749601, maf-5-some-pop 619 chr1 4462459 4462460 rs349400 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 2299.000000,2709.000000, 0.459065,0.540935, maf-5-some-pop,maf-5-all-pops 619 chr1 4462670 4462671 rs114885765 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 4945.000000,63.000000, 0.987420,0.012580, maf-5-some-pop,maf-5-all-pops 619 chr1 4462903 4462904 rs12046579 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3758.000000,1250.000000, 0.750399,0.249601, maf-5-some-pop 619 chr1 4462996 4462997 rs12046613 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4130.000000,878.000000, 0.824681,0.175319, maf-5-some-pop,maf-5-all-pops 619 chr1 4463228 4463229 rs17451814 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 399.000000,4609.000000, 0.079673,0.920327, maf-5-some-pop 619 chr1 4463584 4463585 rs349401 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 G,T, 1615.000000,3393.000000, 0.322484,0.677516, maf-5-some-pop,maf-5-all-pops 619 chr1 4463656 4463657 rs72632753 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 399.000000,4609.000000, 0.079673,0.920327, maf-5-some-pop,maf-5-all-pops 619 chr1 4463664 4463665 rs349402 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 532.000000,4476.000000, 0.106230,0.893770, maf-5-some-pop 619 chr1 4463752 4463753 rs2898801 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4035.000000,973.000000, 0.805711,0.194289, maf-5-some-pop 619 chr1 4464124 4464125 rs12144027 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4608.000000,400.000000, 0.920128,0.079872, maf-5-some-pop,maf-5-all-pops 619 chr1 4464156 4464157 rs72849141 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop,maf-5-all-pops 619 chr1 4464441 4464442 rs4347181 0 + C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop 619 chr1 4464932 4464933 rs12116790 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4569.000000,439.000000, 0.912340,0.087660, maf-5-some-pop 619 chr1 4465238 4465239 rs111638264 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 619 chr1 4465351 4465352 rs56121606 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4759.000000,249.000000, 0.950280,0.049720, maf-5-some-pop,maf-5-all-pops 619 chr1 4466291 4466292 rs72849142 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4759.000000,249.000000, 0.950280,0.049720, maf-5-some-pop,maf-5-all-pops 619 chr1 4466529 4466530 rs74049413 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,T, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop,maf-5-all-pops 619 chr1 4466534 4466535 rs10915525 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 505.000000,4503.000000, 0.100839,0.899161, maf-5-some-pop 619 chr1 4466907 4466908 rs577114 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 522.000000,4486.000000, 0.104233,0.895767, maf-5-some-pop 619 chr1 4466941 4466942 rs113192617 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop,maf-5-all-pops 619 chr1 4467063 4467064 rs116243916 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4946.000000,62.000000, 0.987620,0.012380, 619 chr1 4467095 4467096 rs72849143 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 619 chr1 4467299 4467300 rs12042553 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1270.000000,3738.000000, 0.253594,0.746406, maf-5-some-pop 619 chr1 4467407 4467408 rs57700963 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4126.000000,882.000000, 0.823882,0.176118, 619 chr1 4467437 4467438 rs11811136 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4926.000000,82.000000, 0.983626,0.016374, 619 chr1 4467528 4467529 rs4654429 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1495.000000,3513.000000, 0.298522,0.701478, 619 chr1 4467567 4467568 rs113790249 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 G,T, 4945.000000,63.000000, 0.987420,0.012580, 619 chr1 4467807 4467808 rs582909 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 585.000000,4423.000000, 0.116813,0.883187, maf-5-some-pop 619 chr1 4468117 4468118 rs17451926 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,T, 400.000000,4608.000000, 0.079872,0.920128, maf-5-some-pop 619 chr1 4468147 4468148 rs59830574 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,TISHKOFF, 2 C,G, 66.000000,4942.000000, 0.013179,0.986821, 619 chr1 4468201 4468202 rs72632757 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 458.000000,4550.000000, 0.091454,0.908546, maf-5-some-pop 619 chr1 4468533 4468534 rs116044597 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 619 chr1 4468711 4468712 rs7415739 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,PERLEGEN,SC_JCM,SSMP, 2 C,T, 4608.000000,400.000000, 0.920128,0.079872, maf-5-some-pop 619 chr1 4468723 4468724 rs2411774 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4550.000000,458.000000, 0.908546,0.091454, maf-5-some-pop,maf-5-all-pops 619 chr1 4468746 4468747 rs12047204 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4062.000000,946.000000, 0.811102,0.188898, maf-5-some-pop 619 chr1 4468870 4468871 rs61335655 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 619 chr1 4469234 4469235 rs72632759 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4608.000000,400.000000, 0.920128,0.079872, maf-5-some-pop,maf-5-all-pops 619 chr1 4469434 4469435 rs6687224 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 3513.000000,1495.000000, 0.701478,0.298522, maf-5-some-pop,maf-5-all-pops 619 chr1 4469749 4469753 rs140804562 0 + TTGT TTGT -/TTGT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TTGT, 284.000000,4724.000000, 0.056709,0.943291, 619 chr1 4469923 4469924 rs6687736 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4605.000000,403.000000, 0.919529,0.080471, maf-5-some-pop,maf-5-all-pops 619 chr1 4470290 4470290 rs35427173 0 + - - -/T genomic insertion unknown 0 0 near-gene-5 between 1 4 1000GENOMES,ABI,BILGI_BIOE,SSMP, 2 -,T, 3557.000000,1451.000000, 0.710264,0.289736, 619 chr1 4470528 4470529 rs12023230 0 + T T A/T genomic single unknown 0 0 near-gene-5 exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 951.000000,4057.000000, 0.189896,0.810104, maf-5-some-pop 619 chr1 4470874 4470875 rs2926477 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1212.000000,3796.000000, 0.242013,0.757987, maf-5-some-pop,maf-5-all-pops 619 chr1 4471077 4471077 rs139349143 0 + - - -/G genomic insertion unknown 0 0 near-gene-5 between 1 2 1000GENOMES,LUNTER, 2 -,G, 4946.000000,62.000000, 0.987620,0.012380, 619 chr1 4471373 4471374 rs10915528 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 460.000000,4548.000000, 0.091853,0.908147, maf-5-some-pop 619 chr1 4471773 4471774 rs12022104 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4118.000000,890.000000, 0.822284,0.177716, maf-5-some-pop 619 chr1 4472012 4472013 rs10915529 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1839.000000,3169.000000, 0.367212,0.632788, maf-5-some-pop,maf-5-all-pops 619 chr1 4472025 4472026 rs659514 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3700.000000,1308.000000, 0.738818,0.261182, maf-5-some-pop,maf-5-all-pops 619 chr1 4472123 4472124 rs2926478 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 516.000000,4492.000000, 0.103035,0.896965, maf-5-some-pop 619 chr1 4472221 4472222 rs2926479 0 + T T A/T genomic single unknown 0 0 ncRNA exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,T, 509.000000,4499.000000, 0.101637,0.898363, maf-5-some-pop 619 chr1 4472375 4472376 rs114060995 0 + T T A/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,T, 51.000000,4957.000000, 0.010184,0.989816, 619 chr1 4472447 4472448 rs4654533 0 + C C C/G genomic single unknown 0 0 ncRNA exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2568.000000,2440.000000, 0.512780,0.487220, maf-5-some-pop,maf-5-all-pops 619 chr1 4472673 4472674 rs72849165 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 619 chr1 4473172 4473173 rs2926480 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,T, 918.000000,4090.000000, 0.183307,0.816693, maf-5-some-pop 619 chr1 4473228 4473229 rs74049416 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, 619 chr1 4473232 4473236 rs138368704 0 + ATTT ATTT -/ATTT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,ATTT, 499.000000,4509.000000, 0.099641,0.900359, 619 chr1 4473262 4473263 rs2926481 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 4506.000000,502.000000, 0.899760,0.100240, maf-5-some-pop 619 chr1 4473577 4473577 rs139219667 0 + - - -/T genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,T, 4722.000000,286.000000, 0.942891,0.057109, 619 chr1 4473792 4473793 rs78357815 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop,maf-5-all-pops 619 chr1 4473797 4473798 rs74049417 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,maf-5-all-pops 619 chr1 4473868 4473869 rs72849166 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,C, 4946.000000,62.000000, 0.987620,0.012380, 619 chr1 4474001 4474002 rs349403 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop 619 chr1 4474496 4474501 rs111562893 0 + ATAAG ATAAG -/ATAAG genomic deletion unknown 0 0 intron range 1 3 1000GENOMES,BUSHMAN,LUNTER, 2 -,ATAAG, 204.000000,4804.000000, 0.040735,0.959265, 619 chr1 4474726 4474727 rs79681099 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, 619 chr1 4474734 4474734 rs200937539 0 + - - -/A genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,A, 4946.000000,62.000000, 0.987620,0.012380, 619 chr1 4474759 4474760 rs114590747 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop,maf-5-all-pops 619 chr1 4474760 4474761 rs116684698 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop,maf-5-all-pops 619 chr1 4474789 4474790 rs111357672 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 205.000000,4803.000000, 0.040934,0.959065, 619 chr1 4474812 4474813 rs112909743 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 4804.000000,204.000000, 0.959265,0.040735, 619 chr1 4474855 4474856 rs6656086 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4590.000000,418.000000, 0.916534,0.083467, maf-5-some-pop,maf-5-all-pops 619 chr1 4474972 4474973 rs6661121 0 + A A A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 3972.000000,1036.000000, 0.793131,0.206869, maf-5-some-pop 619 chr1 4474978 4474979 rs75894096 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 619 chr1 4475183 4475184 rs349405 0 + A A A/C genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1233.000000,3775.000000, 0.246206,0.753794, maf-5-some-pop,maf-5-all-pops 619 chr1 4475213 4475214 rs12027528 0 + T T A/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 887.000000,4121.000000, 0.177117,0.822883, maf-5-some-pop,maf-5-all-pops 619 chr1 4475255 4475256 rs74049382 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 619 chr1 4475401 4475402 rs56124139 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 619 chr1 4475509 4475510 rs58063446 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 619 chr1 4475632 4475633 rs7522080 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1037.000000,3971.000000, 0.207069,0.792931, maf-5-some-pop 619 chr1 4475765 4475766 rs349406 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3790.000000,1218.000000, 0.756789,0.243211, maf-5-some-pop,maf-5-all-pops 619 chr1 4475910 4475911 rs12562242 0 + G G G/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3438.000000,1570.000000, 0.686502,0.313498, maf-5-some-pop,maf-5-all-pops 619 chr1 4476266 4476267 rs74049383 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 190.000000,4818.000000, 0.037939,0.962061, maf-5-some-pop,maf-5-all-pops 619 chr1 4476272 4476273 rs349407 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2549.000000,2459.000000, 0.508986,0.491014, maf-5-some-pop,maf-5-all-pops 619 chr1 4476280 4476281 rs72632764 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop,maf-5-all-pops 619 chr1 4476366 4476367 rs60132166 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 619 chr1 4476367 4476368 rs74049385 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops 619 chr1 4476383 4476384 rs4654534 0 + T T A/T genomic single unknown 0 0 ncRNA exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1037.000000,3971.000000, 0.207069,0.792931, maf-5-some-pop 619 chr1 4476444 4476445 rs114068602 0 + T T G/T genomic single unknown 0 0 ncRNA exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 G,T, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop,maf-5-all-pops 619 chr1 4476507 4476508 rs114914348 0 + A A A/G genomic single unknown 0 0 ncRNA exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4941.000000,67.000000, 0.986621,0.013379, maf-5-some-pop,maf-5-all-pops 619 chr1 4476757 4476758 rs12047125 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 289.000000,4719.000000, 0.057708,0.942292, maf-5-some-pop,maf-5-all-pops 619 chr1 4476849 4476850 rs34900345 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 A,G, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 619 chr1 4476897 4476898 rs148712795 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4922.000000,86.000000, 0.982827,0.017173, 619 chr1 4476938 4476939 rs56023912 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 619 chr1 4477084 4477085 rs10915530 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3805.000000,1203.000000, 0.759784,0.240216, maf-5-some-pop 619 chr1 4477333 4477334 rs116224980 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 619 chr1 4477335 4477336 rs77854176 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop,maf-5-all-pops 619 chr1 4477391 4477392 rs1490416 0 + T T A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1510.000000,3498.000000, 0.301518,0.698482, maf-5-some-pop,maf-5-all-pops 619 chr1 4477411 4477412 rs114342062 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, maf-5-some-pop,maf-5-all-pops 619 chr1 4477475 4477476 rs349408 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 498.000000,4510.000000, 0.099441,0.900559, maf-5-some-pop 619 chr1 4477621 4477622 rs12119213 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,G, 4586.000000,422.000000, 0.915735,0.084265, maf-5-some-pop 619 chr1 4477643 4477644 rs74049387 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 619 chr1 4477799 4477800 rs74049389 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4818.000000,190.000000, 0.962061,0.037939, maf-5-some-pop,maf-5-all-pops 619 chr1 4477814 4477815 rs74049390 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop,maf-5-all-pops 619 chr1 4477910 4477911 rs349409 0 + C C C/T genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1235.000000,3773.000000, 0.246605,0.753395, maf-5-some-pop,maf-5-all-pops 619 chr1 4478038 4478039 rs349410 0 + C C A/C genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3786.000000,1222.000000, 0.755990,0.244010, maf-5-some-pop,maf-5-all-pops 619 chr1 4478088 4478089 rs349411 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2447.000000,2561.000000, 0.488618,0.511382, maf-5-some-pop,maf-5-all-pops 619 chr1 4478138 4478139 rs10915531 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3511.000000,1497.000000, 0.701078,0.298922, maf-5-some-pop 619 chr1 4478248 4478249 rs651642 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop 619 chr1 4478441 4478442 rs12120157 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop 619 chr1 4478881 4478882 rs349412 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop,maf-5-all-pops 619 chr1 4479674 4479675 rs115248865 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 619 chr1 4479893 4479894 rs116711927 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, 619 chr1 4480011 4480012 rs72632767 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 419.000000,4589.000000, 0.083666,0.916334, maf-5-some-pop,maf-5-all-pops 619 chr1 4480276 4480277 rs493178 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA-UK,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 C,G, 2449.000000,2559.000000, 0.489018,0.510982, 619 chr1 4480430 4480431 rs7517950 0 + A A A/G genomic single by-cluster,by-frequency,by-1000genomes 0.318564 0.240414 intron exact 1 3 1000GENOMES,GMI,WI_SSAHASNP, 2 A,G, 88.000000,30.000000, 0.745763,0.254237, maf-5-some-pop,maf-5-all-pops 619 chr1 4480444 4480445 rs115244338 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop,maf-5-all-pops 619 chr1 4480450 4480451 rs1309838 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV,ILLUMINA-UK,KWOK,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2478.000000,2530.000000, 0.494808,0.505192, 619 chr1 4480469 4480470 rs1309839 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV,ILLUMINA-UK,KWOK,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2532.000000,2476.000000, 0.505591,0.494409, 619 chr1 4480485 4480486 rs57023380 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK, 2 C,T, 4825.000000,183.000000, 0.963458,0.036541, maf-5-some-pop,maf-5-all-pops 619 chr1 4480701 4480702 rs143451616 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 619 chr1 4480776 4480777 rs61656479 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 4807.000000,201.000000, 0.959864,0.040136, maf-5-some-pop,maf-5-all-pops 619 chr1 4481458 4481459 rs114908740 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 619 chr1 4481492 4481493 rs35799150 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4388.000000,620.000000, 0.876198,0.123802, maf-5-some-pop,maf-5-all-pops 619 chr1 4481686 4481687 rs150955700 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, 619 chr1 4481995 4481996 rs72632772 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 418.000000,4590.000000, 0.083467,0.916534, maf-5-some-pop,maf-5-all-pops 619 chr1 4482001 4482002 rs12026870 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 619 chr1 4482115 4482116 rs12563195 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4722.000000,286.000000, 0.942891,0.057109, maf-5-some-pop 619 chr1 4482763 4482764 rs349385 0 + A A A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 501.000000,4507.000000, 0.100040,0.899960, maf-5-some-pop 619 chr1 4482964 4482965 rs74049597 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 C,T, 201.000000,4807.000000, 0.040136,0.959864, maf-5-some-pop,maf-5-all-pops 619 chr1 4483402 4483403 rs41266223 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SI_EXO,SSMP, 2 C,T, 335.000000,4673.000000, 0.066893,0.933107, maf-5-some-pop,maf-5-all-pops 619 chr1 4483586 4483587 rs12025904 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 838.000000,4170.000000, 0.167332,0.832668, maf-5-some-pop 619 chr1 4484053 4484054 rs4654535 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 14 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3952.000000,1056.000000, 0.789137,0.210863, maf-5-some-pop 619 chr1 4484054 4484055 rs114723624 0 + G G A/G genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, maf-5-some-pop,maf-5-all-pops 619 chr1 4484512 4484513 rs4654536 0 + T T C/T genomic single unknown 0 0 ncRNA exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1372.000000,3636.000000, 0.273962,0.726038, maf-5-some-pop,maf-5-all-pops 619 chr1 4484515 4484516 rs114754671 0 + C C C/T genomic single unknown 0 0 ncRNA exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 619 chr1 4485097 4485098 rs57857995 0 + G G G/T genomic single unknown 0 0 near-gene-3 exact 1 5 1000GENOMES,COMPLETE_GENOMICS,HGSV,JMKIDD_LAB,TISHKOFF, 2 G,T, 4932.000000,76.000000, 0.984824,0.015176, 619 chr1 4485104 4485105 rs112826743 0 + G G G/T genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 619 chr1 4485182 4485183 rs57436781 0 + G G G/T genomic single unknown 0 0 near-gene-3 exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 G,T, 4951.000000,57.000000, 0.988618,0.011382, 619 chr1 4485613 4485614 rs12066763 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,SC_SNP,TISHKOFF, 2 G,T, 4935.000000,73.000000, 0.985423,0.014577, 619 chr1 4486071 4486072 rs72849191 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,G, 132.000000,4876.000000, 0.026358,0.973642, 619 chr1 4486094 4486095 rs4654537 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,G, 1319.000000,3689.000000, 0.263379,0.736621, maf-5-some-pop,maf-5-all-pops 619 chr1 4486231 4486232 rs74049604 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 619 chr1 4487035 4487035 rs539410622 0 + - - -/TG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TG, 4934.000000,74.000000, 0.985224,0.014776, 619 chr1 4487040 4487040 rs35831569 0 + - - -/GTGA genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,ABI,BILGI_BIOE,BL,LUNTER, 2 -,GTGA, 2720.000000,2288.000000, 0.543131,0.456869, 619 chr1 4487083 4487087 rs201878140 0 + TGTG TGTG -/TGTG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TGTG, 132.000000,4876.000000, 0.026358,0.973642, 619 chr1 4487101 4487102 rs16838984 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,T, 967.000000,4041.000000, 0.193091,0.806909, maf-5-some-pop,maf-5-all-pops 619 chr1 4487229 4487231 rs35106948 0 + GA GA -/GA genomic deletion unknown 0 0 unknown range 1 8 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,SSMP, 2 -,GA, 2641.000000,2367.000000, 0.527356,0.472644, 619 chr1 4487508 4487509 rs12402359 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 604.000000,4404.000000, 0.120607,0.879393, maf-5-some-pop,maf-5-all-pops 619 chr1 4487521 4487523 rs57278065 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,HGSV,LUNTER,TISHKOFF, 2 -,AT, 116.000000,4892.000000, 0.023163,0.976837, 619 chr1 4487600 4487601 rs58327972 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 917.000000,4091.000000, 0.183107,0.816893, maf-5-some-pop 619 chr1 4487699 4487700 rs114561392 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 619 chr1 4487862 4487863 rs4639726 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_JCM, 2 C,T, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 619 chr1 4487938 4487939 rs60292250 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, 619 chr1 4487946 4487948 rs61680445 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,HGSV,LUNTER,SSMP, 2 -,CA, 149.000000,4859.000000, 0.029752,0.970248, 619 chr1 4488104 4488106 rs146335726 0 + AC AC -/AC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,AC, 72.000000,4936.000000, 0.014377,0.985623, 619 chr1 4488131 4488132 rs77126827 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 C,T, 383.000000,4625.000000, 0.076478,0.923522, maf-5-some-pop,maf-5-all-pops 619 chr1 4488147 4488148 rs537916231 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4641.000000,367.000000, 0.926717,0.073283, 619 chr1 4488152 4488153 rs554650025 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4648.000000,360.000000, 0.928115,0.071885, 619 chr1 4488211 4488212 rs546108223 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 227.000000,4781.000000, 0.045327,0.954673, 619 chr1 4488213 4488214 rs555859538 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 171.000000,4837.000000, 0.034145,0.965855, 619 chr1 4488215 4488216 rs576004729 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4837.000000,171.000000, 0.965855,0.034145, 619 chr1 4488219 4488220 rs541907065 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 352.000000,4656.000000, 0.070288,0.929712, 619 chr1 4488221 4488222 rs561772461 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 351.000000,4657.000000, 0.070088,0.929912, 619 chr1 4488290 4488291 rs4654542 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 2368.000000,2640.000000, 0.472843,0.527157, maf-5-some-pop,maf-5-all-pops 619 chr1 4488455 4488456 rs4654434 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2641.000000,2367.000000, 0.527356,0.472644, maf-5-some-pop,maf-5-all-pops 619 chr1 4488778 4488779 rs12029910 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4092.000000,916.000000, 0.817093,0.182907, maf-5-some-pop 619 chr1 4488830 4488831 rs6667927 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3531.000000,1477.000000, 0.705072,0.294928, maf-5-some-pop,maf-5-all-pops 619 chr1 4488881 4488882 rs72849197 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 619 chr1 4488913 4488914 rs115513277 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 619 chr1 4488978 4488979 rs6658372 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2773.000000,2235.000000, 0.553714,0.446286, maf-5-some-pop,maf-5-all-pops 619 chr1 4489112 4489113 rs72849200 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 619 chr1 4489344 4489345 rs6668442 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4402.000000,606.000000, 0.878994,0.121006, maf-5-some-pop 619 chr1 4489451 4489452 rs142766220 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, 619 chr1 4489487 4489488 rs77706804 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 414.000000,4594.000000, 0.082668,0.917332, maf-5-some-pop 619 chr1 4489528 4489529 rs10915533 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1457.000000,3551.000000, 0.290935,0.709065, maf-5-some-pop,maf-5-all-pops 619 chr1 4489600 4489601 rs74826619 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4528.000000,480.000000, 0.904153,0.095847, maf-5-some-pop,maf-5-all-pops 619 chr1 4489645 4489646 rs74049605 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 619 chr1 4489687 4489688 rs72849903 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,TISHKOFF, 2 G,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 619 chr1 4490096 4490097 rs112525310 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, 619 chr1 4490136 4490137 rs12029617 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 967.000000,4041.000000, 0.193091,0.806909, maf-5-some-pop 619 chr1 4490337 4490338 rs6676603 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,T, 3480.000000,1528.000000, 0.694888,0.305112, maf-5-some-pop,maf-5-all-pops 619 chr1 4490473 4490474 rs72849908 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop,maf-5-all-pops 619 chr1 4490599 4490600 rs58603358 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 619 chr1 4490620 4490621 rs12128251 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3822.000000,1186.000000, 0.763179,0.236821, maf-5-some-pop 619 chr1 4490659 4490660 rs61257810 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 619 chr1 4491444 4491445 rs10915534 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4398.000000,610.000000, 0.878195,0.121805, maf-5-some-pop 619 chr1 4491459 4491460 rs10915535 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP, 2 G,T, 4404.000000,604.000000, 0.879393,0.120607, maf-5-some-pop 619 chr1 4491482 4491483 rs115810063 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, 619 chr1 4491578 4491579 rs75835057 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 480.000000,4528.000000, 0.095847,0.904153, maf-5-some-pop,maf-5-all-pops 619 chr1 4491746 4491747 rs17452433 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 479.000000,4529.000000, 0.095647,0.904353, maf-5-some-pop 619 chr1 4491777 4491778 rs1870508 0 - G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 619 chr1 4491952 4491953 rs79206196 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop,maf-5-all-pops 619 chr1 4492000 4492001 rs2007533 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 2039.000000,2969.000000, 0.407149,0.592851, maf-5-some-pop,maf-5-all-pops 619 chr1 4492097 4492098 rs1809702 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3673.000000,1335.000000, 0.733427,0.266573, 619 chr1 4492423 4492424 rs6681282 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop 619 chr1 4492766 4492767 rs114390944 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 619 chr1 4492861 4492862 rs12125067 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop,maf-5-all-pops 619 chr1 4492886 4492887 rs12130475 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 G,T, 608.000000,4400.000000, 0.121406,0.878594, maf-5-some-pop 619 chr1 4492979 4492980 rs12128076 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 A,C, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop 619 chr1 4492996 4492997 rs113006223 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop,maf-5-all-pops 619 chr1 4493008 4493009 rs12130512 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,T, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop 619 chr1 4493325 4493326 rs72632786 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop 619 chr1 4493361 4493362 rs60332560 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 280.000000,4728.000000, 0.055911,0.944089, maf-5-some-pop,maf-5-all-pops 619 chr1 4493393 4493394 rs77064380 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4403.000000,605.000000, 0.879193,0.120807, maf-5-some-pop 619 chr1 4493419 4493420 rs72632787 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop,maf-5-all-pops 619 chr1 4493687 4493688 rs1565452 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4403.000000,605.000000, 0.879193,0.120807, maf-5-some-pop 619 chr1 4494487 4494488 rs17452528 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,PERLEGEN, 2 A,C, 603.000000,4405.000000, 0.120407,0.879593, maf-5-some-pop 619 chr1 4494698 4494699 rs6693130 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,TISHKOFF, 2 A,G, 4668.000000,340.000000, 0.932109,0.067891, 619 chr1 4494714 4494715 rs12132486 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 626.000000,4382.000000, 0.125000,0.875000, 619 chr1 4494778 4494779 rs72849919 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 619 chr1 4494863 4494864 rs143558073 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 619 chr1 4494973 4494974 rs12072315 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2741.000000,2267.000000, 0.547324,0.452676, maf-5-some-pop,maf-5-all-pops 619 chr1 4495088 4495089 rs112831589 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,maf-5-all-pops 619 chr1 4495090 4495091 rs7546444 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1298.000000,3710.000000, 0.259185,0.740815, maf-5-some-pop,maf-5-all-pops 619 chr1 4495121 4495122 rs7533212 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 357.000000,4651.000000, 0.071286,0.928714, maf-5-some-pop 619 chr1 4495158 4495159 rs79396111 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4538.000000,470.000000, 0.906150,0.093850, maf-5-some-pop,maf-5-all-pops 619 chr1 4495284 4495285 rs12132690 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 597.000000,4411.000000, 0.119209,0.880791, maf-5-some-pop 619 chr1 4495723 4495724 rs34807533 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,ENSEMBL,GMI, 2 C,T, 541.000000,4467.000000, 0.108027,0.891973, 619 chr1 4495759 4495760 rs34951958 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4468.000000,540.000000, 0.892173,0.107827, maf-5-some-pop,maf-5-all-pops 619 chr1 4495764 4495765 rs34029086 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4468.000000,540.000000, 0.892173,0.107827, maf-5-some-pop,maf-5-all-pops 619 chr1 4495773 4495774 rs35112997 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 540.000000,4468.000000, 0.107827,0.892173, maf-5-some-pop,maf-5-all-pops 619 chr1 4495840 4495841 rs61474195 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 428.000000,4580.000000, 0.085463,0.914537, maf-5-some-pop,maf-5-all-pops 619 chr1 4496179 4496180 rs10915536 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2436.000000,2572.000000, 0.486422,0.513578, maf-5-some-pop,maf-5-all-pops 619 chr1 4496368 4496369 rs1762812 0 - T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 619 chr1 4496516 4496517 rs1674876 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop 619 chr1 4496827 4496828 rs114877180 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 619 chr1 4497117 4497118 rs6660514 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2484.000000,2524.000000, 0.496006,0.503994, maf-5-some-pop,maf-5-all-pops 619 chr1 4497216 4497217 rs1674879 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BL,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4332.000000,676.000000, 0.865016,0.134984, maf-5-some-pop,maf-5-all-pops 619 chr1 4497312 4497313 rs77633111 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4642.000000,366.000000, 0.926917,0.073083, maf-5-some-pop 619 chr1 4497547 4497548 rs35211041 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 619 chr1 4497594 4497595 rs72632801 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 650.000000,4358.000000, 0.129792,0.870208, maf-5-some-pop 619 chr1 4497596 4497597 rs74897085 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,TISHKOFF, 2 C,T, 4629.000000,379.000000, 0.924321,0.075679, maf-5-some-pop,maf-5-all-pops 619 chr1 4497790 4497791 rs1234932 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop 619 chr1 4497874 4497875 rs74607527 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 412.000000,4596.000000, 0.082268,0.917732, maf-5-some-pop 619 chr1 4498135 4498136 rs57673543 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop,maf-5-all-pops 619 chr1 4498842 4498843 rs16839008 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,TISHKOFF, 2 C,T, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop 619 chr1 4498917 4498918 rs115438136 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 619 chr1 4498957 4498958 rs112392681 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 619 chr1 4499830 4499831 rs780572 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop 619 chr1 4500244 4500245 rs12727067 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2452.000000,2556.000000, 0.489617,0.510383, maf-5-some-pop,maf-5-all-pops 619 chr1 4500250 4500251 rs74049661 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4753.000000,255.000000, 0.949081,0.050919, maf-5-some-pop,maf-5-all-pops 619 chr1 4500266 4500267 rs74049662 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop,maf-5-all-pops 619 chr1 4500435 4500436 rs12731060 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2489.000000,2519.000000, 0.497005,0.502995, maf-5-some-pop,maf-5-all-pops 619 chr1 4500443 4500444 rs59307718 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 619 chr1 4501153 4501154 rs6674190 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2628.000000,2380.000000, 0.524760,0.475240, 619 chr1 4501591 4501592 rs74049664 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 273.000000,4735.000000, 0.054513,0.945487, maf-5-some-pop,maf-5-all-pops 619 chr1 4501910 4501911 rs12128230 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,C, 4360.000000,648.000000, 0.870607,0.129393, maf-5-some-pop 619 chr1 4502113 4502114 rs12028598 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 G,T, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop 619 chr1 4502197 4502198 rs780574 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1164.000000,3844.000000, 0.232428,0.767572, maf-5-some-pop,maf-5-all-pops 619 chr1 4502491 4502492 rs10915538 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 687.000000,4321.000000, 0.137181,0.862819, maf-5-some-pop 619 chr1 4502704 4502705 rs780575 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3842.000000,1166.000000, 0.767173,0.232827, maf-5-some-pop,maf-5-all-pops 619 chr1 4502780 4502781 rs780576 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1166.000000,3842.000000, 0.232827,0.767173, maf-5-some-pop,maf-5-all-pops 619 chr1 4502865 4502866 rs780577 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3842.000000,1166.000000, 0.767173,0.232827, maf-5-some-pop,maf-5-all-pops 619 chr1 4502907 4502908 rs780578 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1166.000000,3842.000000, 0.232827,0.767173, maf-5-some-pop,maf-5-all-pops 619 chr1 4503044 4503045 rs780579 0 + C C C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,G, 3842.000000,1166.000000, 0.767173,0.232827, maf-5-some-pop,maf-5-all-pops 619 chr1 4503101 4503102 rs12127881 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4358.000000,650.000000, 0.870208,0.129792, maf-5-some-pop 619 chr1 4503239 4503240 rs780580 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3198.000000,1810.000000, 0.638578,0.361422, maf-5-some-pop 619 chr1 4503261 4503262 rs12127923 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP, 2 A,C, 648.000000,4360.000000, 0.129393,0.870607, maf-5-some-pop 619 chr1 4503585 4503586 rs148783934 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,T, 273.000000,4735.000000, 0.054513,0.945487, 619 chr1 4503662 4503663 rs12034619 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4669.000000,339.000000, 0.932308,0.067692, maf-5-some-pop 619 chr1 4503724 4503725 rs780581 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 398.000000,40.000000, 0.908676,0.091324, maf-5-some-pop 619 chr1 4503747 4503748 rs780582 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 802.000000,4206.000000, 0.160144,0.839856, maf-5-some-pop,maf-5-all-pops 619 chr1 4503812 4503813 rs72849945 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4877.000000,131.000000, 0.973842,0.026158, maf-5-some-pop,maf-5-all-pops 619 chr1 4503816 4503817 rs138944306 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 4950.000000,58.000000, 0.988419,0.011582, 619 chr1 4503951 4503952 rs705683 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3842.000000,1166.000000, 0.767173,0.232827, maf-5-some-pop,maf-5-all-pops 619 chr1 4504182 4504183 rs17419129 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, maf-5-some-pop 619 chr1 4504199 4504200 rs706143 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2883.000000,2125.000000, 0.575679,0.424321, maf-5-some-pop,maf-5-all-pops 619 chr1 4504228 4504229 rs780583 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3842.000000,1166.000000, 0.767173,0.232827, maf-5-some-pop,maf-5-all-pops 619 chr1 4504331 4504332 rs780584 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2087.000000,2921.000000, 0.416733,0.583267, maf-5-some-pop,maf-5-all-pops 619 chr1 4504407 4504408 rs10915539 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 59.000000,4949.000000, 0.011781,0.988219, maf-5-some-pop,maf-5-all-pops 619 chr1 4504430 4504431 rs10915540 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop 619 chr1 4504467 4504468 rs116223385 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 619 chr1 4504949 4504953 rs70955767 0 + TTTT TTTT -/TTTT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,PJP, 2 -,TTTT, 2961.000000,2047.000000, 0.591254,0.408746, 619 chr1 4505511 4505512 rs10915541 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP, 2 C,T, 4361.000000,647.000000, 0.870807,0.129193, maf-5-some-pop 619 chr1 4505939 4505940 rs10915542 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop 619 chr1 4506324 4506325 rs780588 0 + T T G/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4760.000000,248.000000, 0.950479,0.049521, maf-5-some-pop 619 chr1 4506643 4506644 rs55959421 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 362.000000,4646.000000, 0.072284,0.927716, maf-5-some-pop 619 chr1 4506676 4506677 rs55916622 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4646.000000,362.000000, 0.927716,0.072284, maf-5-some-pop,maf-5-all-pops 619 chr1 4506844 4506845 rs10799233 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4357.000000,651.000000, 0.870008,0.129992, maf-5-some-pop 619 chr1 4507241 4507242 rs780589 0 + G G G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,TISHKOFF,TSC-CSHL, 2 G,T, 1010.000000,3998.000000, 0.201677,0.798323, 619 chr1 4507258 4507259 rs12032561 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2461.000000,2547.000000, 0.491414,0.508586, maf-5-some-pop,maf-5-all-pops 619 chr1 4507369 4507370 rs780590 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 4038.000000,970.000000, 0.806310,0.193690, maf-5-some-pop,maf-5-all-pops 619 chr1 4507465 4507466 rs780591 0 + G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop 619 chr1 4507659 4507660 rs780592 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4701.000000,307.000000, 0.938698,0.061302, maf-5-some-pop 619 chr1 4507677 4507678 rs78209902 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop,maf-5-all-pops 619 chr1 4507762 4507763 rs780594 0 + T T C/T genomic single unknown 0 0 unknown exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4038.000000,970.000000, 0.806310,0.193690, maf-5-some-pop 619 chr1 4507778 4507779 rs79916352 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,G, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 619 chr1 4508171 4508172 rs705684 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 323.000000,4685.000000, 0.064497,0.935503, maf-5-some-pop 619 chr1 4508411 4508412 rs780595 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 249.000000,4759.000000, 0.049720,0.950280, maf-5-some-pop 619 chr1 4509105 4509106 rs780596 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 215.000000,4793.000000, 0.042931,0.957069, maf-5-some-pop 619 chr1 4509336 4509337 rs2054269 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2575.000000,2433.000000, 0.514177,0.485823, maf-5-some-pop,maf-5-all-pops 619 chr1 4509378 4509379 rs2054270 0 + C C A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2575.000000,2433.000000, 0.514177,0.485823, maf-5-some-pop,maf-5-all-pops 619 chr1 4509865 4509866 rs111974464 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF, 2 C,T, 4687.000000,321.000000, 0.935903,0.064097, 619 chr1 4510419 4510420 rs12564622 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 318.000000,4690.000000, 0.063498,0.936502, maf-5-some-pop 619 chr1 4511374 4511375 rs16839039 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 G,T, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop 619 chr1 4511394 4511395 rs114069924 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 619 chr1 4511562 4511563 rs114707505 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 619 chr1 4511666 4511667 rs780597 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4156.000000,852.000000, 0.829872,0.170128, maf-5-some-pop,maf-5-all-pops 619 chr1 4511770 4511771 rs74921346 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop 619 chr1 4511803 4511804 rs115199567 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop,maf-5-all-pops 619 chr1 4511998 4511999 rs12036073 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4851.000000,157.000000, 0.968650,0.031350, 619 chr1 4512103 4512104 rs113026647 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 619 chr1 4512104 4512105 rs780598 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 866.000000,4142.000000, 0.172923,0.827077, maf-5-some-pop,maf-5-all-pops 619 chr1 4512224 4512225 rs72849963 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 619 chr1 4512236 4512237 rs80078915 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4655.000000,353.000000, 0.929513,0.070487, maf-5-some-pop 619 chr1 4512426 4512427 rs78295089 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4658.000000,350.000000, 0.930112,0.069888, maf-5-some-pop 619 chr1 4512617 4512618 rs112643082 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,T, 4954.000000,54.000000, 0.989217,0.010783, 619 chr1 4513139 4513140 rs111249604 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 619 chr1 4513208 4513209 rs142662037 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 619 chr1 4513330 4513331 rs114338662 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 619 chr1 4513363 4513364 rs111564651 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 619 chr1 4513417 4513418 rs113530675 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,T, 4954.000000,54.000000, 0.989217,0.010783, 619 chr1 4513433 4513434 rs113364424 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 619 chr1 4513452 4513453 rs114213420 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,C, 4420.000000,588.000000, 0.882588,0.117412, 619 chr1 4513458 4513459 rs552719027 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, 619 chr1 4513484 4513484 rs201323727 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,TISHKOFF, 2 -,G, 4954.000000,54.000000, 0.989217,0.010783, 619 chr1 4513503 4513504 rs76462838 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 619 chr1 4513535 4513536 rs112135826 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 619 chr1 4513541 4513542 rs112461480 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,TISHKOFF, 2 A,G, 361.000000,4647.000000, 0.072085,0.927915, maf-5-some-pop,maf-5-all-pops 619 chr1 4513564 4513567 rs145517660 0 + GAA GAA -/GAA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,GAA, 597.000000,4411.000000, 0.119209,0.880791, 619 chr1 4513699 4513700 rs113282309 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 54.000000,4954.000000, 0.010783,0.989217, 619 chr1 4513893 4513894 rs12407583 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 4727.000000,281.000000, 0.943890,0.056110, maf-5-some-pop 619 chr1 4513943 4513944 rs10915543 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4394.000000,614.000000, 0.877396,0.122604, maf-5-some-pop 619 chr1 4514088 4514089 rs12135334 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop,maf-5-all-pops 619 chr1 4514286 4514287 rs112379179 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 619 chr1 4514333 4514334 rs112565315 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 619 chr1 4514452 4514453 rs11584026 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,G, 368.000000,4640.000000, 0.073482,0.926518, maf-5-some-pop 619 chr1 4514620 4514621 rs72849969 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,C, 4950.000000,58.000000, 0.988419,0.011582, 619 chr1 4515414 4515415 rs6426411 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 541.000000,4467.000000, 0.108027,0.891973, 619 chr1 4515479 4515479 rs371196840 0 + - - -/A/AA genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 3 -,A,AA, 4877.000000,95.000000,36.000000, 0.973842,0.018970,0.007188, 619 chr1 4515506 4515507 rs6663198 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,PJP,TISHKOFF, 2 A,C, 4461.000000,547.000000, 0.890775,0.109225, 619 chr1 4516258 4516259 rs12691489 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 619 chr1 4516529 4516530 rs72849974 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 619 chr1 4516572 4516573 rs12131294 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4418.000000,590.000000, 0.882188,0.117812, maf-5-some-pop 619 chr1 4516895 4516896 rs584841 0 - T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,KWOK,SC_JCM, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 619 chr1 4517023 4517024 rs113841417 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 256.000000,4752.000000, 0.051118,0.948882, maf-5-some-pop,maf-5-all-pops 619 chr1 4517988 4517989 rs147345532 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4885.000000,123.000000, 0.975439,0.024561, 619 chr1 4518143 4518144 rs10127576 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3611.000000,1397.000000, 0.721046,0.278954, maf-5-some-pop,maf-5-all-pops 619 chr1 4519356 4519357 rs115472193 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 619 chr1 4519398 4519399 rs605629 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2884.000000,2124.000000, 0.575879,0.424121, maf-5-some-pop,maf-5-all-pops 619 chr1 4519869 4519869 rs34301403 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 2884.000000,2124.000000, 0.575879,0.424121, 619 chr1 4519911 4519912 rs608210 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2899.000000,2109.000000, 0.578874,0.421126, maf-5-some-pop,maf-5-all-pops 619 chr1 4520284 4520285 rs6426412 0 + G G G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4485.000000,523.000000, 0.895567,0.104433, maf-5-some-pop 619 chr1 4520299 4520300 rs620018 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 2126.000000,2882.000000, 0.424521,0.575479, maf-5-some-pop,maf-5-all-pops 619 chr1 4520330 4520331 rs620379 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2126.000000,2882.000000, 0.424521,0.575479, maf-5-some-pop,maf-5-all-pops 619 chr1 4520495 4520496 rs620923 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2797.000000,2211.000000, 0.558506,0.441494, maf-5-some-pop,maf-5-all-pops 619 chr1 4520501 4520502 rs72633524 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4336.000000,672.000000, 0.865815,0.134185, maf-5-some-pop,maf-5-all-pops 619 chr1 4520540 4520541 rs621304 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2885.000000,2123.000000, 0.576078,0.423922, maf-5-some-pop,maf-5-all-pops 619 chr1 4520645 4520646 rs621778 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2120.000000,2888.000000, 0.423323,0.576677, maf-5-some-pop,maf-5-all-pops 619 chr1 4520866 4520867 rs622684 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2121.000000,2887.000000, 0.423522,0.576478, maf-5-some-pop,maf-5-all-pops 619 chr1 4520962 4520963 rs115118261 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 619 chr1 4521163 4521164 rs12137057 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4480.000000,528.000000, 0.894569,0.105431, maf-5-some-pop 619 chr1 4521314 4521315 rs57014379 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop,maf-5-all-pops 619 chr1 4521319 4521320 rs61771168 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 530.000000,4478.000000, 0.105831,0.894169, maf-5-some-pop,maf-5-all-pops 619 chr1 4521480 4521483 rs59656045 0 + AAG AAG -/AAG genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BUSHMAN,HGSV,LUNTER, 2 -,AAG, 300.000000,4708.000000, 0.059904,0.940096, 619 chr1 4521484 4521485 rs635424 0 - T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 619 chr1 4521518 4521519 rs12757108 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 4859.000000,149.000000, 0.970248,0.029752, maf-5-some-pop,maf-5-all-pops 619 chr1 4521601 4521602 rs635918 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2871.000000,2137.000000, 0.573283,0.426717, maf-5-some-pop,maf-5-all-pops 619 chr1 4521873 4521874 rs637233 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2872.000000,2136.000000, 0.573482,0.426518, maf-5-some-pop,maf-5-all-pops 619 chr1 4521910 4521911 rs76684028 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4478.000000,530.000000, 0.894169,0.105831, maf-5-some-pop,maf-5-all-pops 619 chr1 4521987 4521988 rs637669 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2872.000000,2136.000000, 0.573482,0.426518, maf-5-some-pop,maf-5-all-pops 619 chr1 4522020 4522021 rs72849980 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,TISHKOFF, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, 619 chr1 4522047 4522048 rs638086 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2714.000000,2294.000000, 0.541933,0.458067, maf-5-some-pop,maf-5-all-pops 619 chr1 4522058 4522059 rs72849982 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4708.000000,300.000000, 0.940096,0.059904, maf-5-some-pop,maf-5-all-pops 619 chr1 4522114 4522115 rs648816 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 500.000000,4508.000000, 0.099840,0.900160, maf-5-some-pop,maf-5-all-pops 619 chr1 4522465 4522466 rs10737409 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2136.000000,2872.000000, 0.426518,0.573482, maf-5-some-pop,maf-5-all-pops 619 chr1 4522520 4522521 rs10737410 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2874.000000,2134.000000, 0.573882,0.426118, maf-5-some-pop,maf-5-all-pops 619 chr1 4522797 4522798 rs72633528 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4683.000000,325.000000, 0.935104,0.064896, maf-5-some-pop 619 chr1 4522798 4522799 rs651713 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2090.000000,2918.000000, 0.417332,0.582668, maf-5-some-pop,maf-5-all-pops 619 chr1 4522964 4522965 rs652585 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2918.000000,2090.000000, 0.582668,0.417332, maf-5-some-pop,maf-5-all-pops 619 chr1 4523231 4523232 rs687103 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2070.000000,2938.000000, 0.413339,0.586661, maf-5-some-pop,maf-5-all-pops 619 chr1 4523323 4523324 rs72633529 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 325.000000,4683.000000, 0.064896,0.935104, maf-5-some-pop,maf-5-all-pops 619 chr1 4523356 4523357 rs664520 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 657.000000,4351.000000, 0.131190,0.868810, maf-5-some-pop 619 chr1 4523373 4523374 rs116368576 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 619 chr1 4523389 4523390 rs687951 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2948.000000,2060.000000, 0.588658,0.411342, maf-5-some-pop,maf-5-all-pops 619 chr1 4523409 4523410 rs17453664 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 561.000000,4447.000000, 0.112021,0.887979, maf-5-some-pop 619 chr1 4523441 4523442 rs688029 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2062.000000,2946.000000, 0.411741,0.588259, maf-5-some-pop,maf-5-all-pops 619 chr1 4523596 4523597 rs688848 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2948.000000,2060.000000, 0.588658,0.411342, maf-5-some-pop,maf-5-all-pops 619 chr1 4523694 4523695 rs665919 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2923.000000,2085.000000, 0.583666,0.416334, maf-5-some-pop,maf-5-all-pops 619 chr1 4523728 4523729 rs666272 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2061.000000,2947.000000, 0.411542,0.588458, maf-5-some-pop,maf-5-all-pops 619 chr1 4523949 4523950 rs72849986 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 619 chr1 4524117 4524118 rs116592160 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 619 chr1 4524149 4524152 rs144610401 0 + CAG CAG -/CAG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,CAG, 97.000000,4911.000000, 0.019369,0.980631, 619 chr1 4524334 4524335 rs16839046 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 397.000000,4611.000000, 0.079273,0.920727, maf-5-some-pop 619 chr1 4524419 4524420 rs17419859 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 568.000000,4440.000000, 0.113419,0.886581, maf-5-some-pop 619 chr1 4524728 4524729 rs681175 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4377.000000,631.000000, 0.874002,0.125998, maf-5-some-pop 619 chr1 4525176 4525177 rs6426413 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 469.000000,4539.000000, 0.093650,0.906350, 619 chr1 4525302 4525303 rs116579992 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 71.000000,4937.000000, 0.014177,0.985823, 619 chr1 4525603 4525604 rs4654545 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2060.000000,2948.000000, 0.411342,0.588658, maf-5-some-pop,maf-5-all-pops 619 chr1 4525681 4525682 rs4654546 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2193.000000,2815.000000, 0.437899,0.562101, maf-5-some-pop,maf-5-all-pops 619 chr1 4525946 4525947 rs796663 0 + C C C/T genomic single by-frequency 0.4712 0.116493 unknown exact 1 NonIntegerChromCount 2 KWOK,SEQUENOM, 2 C,T, 114.080002,69.919998, 0.620000,0.380000, maf-5-some-pop,maf-5-all-pops 619 chr1 4526040 4526041 rs350166 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2191.000000,2817.000000, 0.437500,0.562500, maf-5-some-pop,maf-5-all-pops 619 chr1 4526127 4526131 rs145047987 0 + AGAT AGAT -/AGAT genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,AGAT, 110.000000,4898.000000, 0.021965,0.978035, 619 chr1 4526280 4526281 rs112454626 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 619 chr1 4526462 4526463 rs6659652 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 619 chr1 4526605 4526606 rs6659863 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 619 chr1 4526606 4526607 rs115320016 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop,maf-5-all-pops 619 chr1 4526750 4526751 rs16839061 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4648.000000,360.000000, 0.928115,0.071885, maf-5-some-pop,maf-5-all-pops 619 chr1 4526769 4526770 rs11808920 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 415.000000,4593.000000, 0.082867,0.917133, maf-5-some-pop,maf-5-all-pops 619 chr1 4526965 4526966 rs113613034 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, maf-5-some-pop,maf-5-all-pops 619 chr1 4527273 4527274 rs116623637 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 619 chr1 4527340 4527341 rs350167 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4286.000000,722.000000, 0.855831,0.144169, maf-5-some-pop 619 chr1 4527462 4527463 rs66516830 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop,maf-5-all-pops 619 chr1 4527467 4527468 rs116092646 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 89.000000,4919.000000, 0.017772,0.982228, 619 chr1 4527771 4527772 rs6426414 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 407.000000,4601.000000, 0.081270,0.918730, maf-5-some-pop,maf-5-all-pops 619 chr1 4527897 4527897 rs145552877 0 + - - -/TTTTA genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,TTTTA, 4626.000000,382.000000, 0.923722,0.076278, 619 chr1 4527963 4527964 rs35030773 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 619 chr1 4528067 4528068 rs10915544 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 619 chr1 4528085 4528085 rs200928643 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,T, 4912.000000,96.000000, 0.980831,0.019169, 619 chr1 4528300 4528301 rs562685324 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,G, 77.000000,4931.000000, 0.015375,0.984625, 619 chr1 4528772 4528773 rs1878054 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 1443.000000,3565.000000, 0.288139,0.711861, maf-5-some-pop,maf-5-all-pops 619 chr1 4529102 4529103 rs7526548 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 A,G, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop 619 chr1 4529282 4529283 rs74052805 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 275.000000,4733.000000, 0.054912,0.945088, 619 chr1 4529543 4529544 rs10915545 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3452.000000,1556.000000, 0.689297,0.310703, maf-5-some-pop,maf-5-all-pops 619 chr1 4529573 4529574 rs17419992 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SSMP, 2 A,G, 435.000000,4573.000000, 0.086861,0.913139, maf-5-some-pop 619 chr1 4529575 4529576 rs115949537 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4883.000000,125.000000, 0.975040,0.024960, maf-5-some-pop,maf-5-all-pops 619 chr1 4529866 4529867 rs114496559 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 619 chr1 4529897 4529898 rs718644 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 274.000000,4734.000000, 0.054713,0.945288, maf-5-some-pop 619 chr1 4529946 4529947 rs61771169 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4579.000000,429.000000, 0.914337,0.085663, maf-5-some-pop 619 chr1 4529980 4529981 rs115979429 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 619 chr1 4530075 4530076 rs147562342 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,C, 428.000000,4580.000000, 0.085463,0.914537, 619 chr1 4530440 4530441 rs6426415 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 528.000000,4480.000000, 0.105431,0.894569, maf-5-some-pop 619 chr1 4530931 4530932 rs116000657 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4926.000000,82.000000, 0.983626,0.016374, maf-5-some-pop,maf-5-all-pops 619 chr1 4530982 4530983 rs112526632 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 619 chr1 4531048 4531049 rs7532888 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4480.000000,528.000000, 0.894569,0.105431, maf-5-some-pop 619 chr1 4531112 4531113 rs113127529 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 G,T, 4905.000000,103.000000, 0.979433,0.020567, 619 chr1 4531121 4531122 rs12142994 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 631.000000,4377.000000, 0.125998,0.874002, maf-5-some-pop 619 chr1 4531156 4531157 rs112037738 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, 619 chr1 4531217 4531218 rs549606697 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 99.000000,4909.000000, 0.019768,0.980232, 619 chr1 4531242 4531243 rs111704970 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 4906.000000,102.000000, 0.979633,0.020367, 619 chr1 4531245 4531246 rs113139801 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,T, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 619 chr1 4531346 4531347 rs115803645 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 619 chr1 4531360 4531361 rs12140634 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4563.000000,445.000000, 0.911142,0.088858, 619 chr1 4531587 4531588 rs61771170 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4480.000000,528.000000, 0.894569,0.105431, 619 chr1 4531810 4531811 rs61550067 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 619 chr1 4532046 4532047 rs61771171 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 507.000000,4501.000000, 0.101238,0.898762, maf-5-some-pop,maf-5-all-pops 619 chr1 4532124 4532125 rs35937747 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,T, 492.000000,4516.000000, 0.098243,0.901757, maf-5-some-pop,maf-5-all-pops 619 chr1 4532379 4532380 rs59492630 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4839.000000,169.000000, 0.966254,0.033746, maf-5-some-pop,maf-5-all-pops 619 chr1 4532515 4532516 rs12142519 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4487.000000,521.000000, 0.895966,0.104034, maf-5-some-pop 619 chr1 4532661 4532662 rs12143974 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4487.000000,521.000000, 0.895966,0.104034, maf-5-some-pop 619 chr1 4532683 4532684 rs12142580 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop 619 chr1 4532710 4532711 rs12142584 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 619 chr1 4532923 4532924 rs12142651 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 619 chr1 4533115 4533115 rs71580265 0 + - - -/TTTA/TTTATTTA/TTTATTTATTTA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI,LUNTER, 4 -,TTTA,TTTATTTA,TTTATTTATTTA, 3716.000000,1210.000000,39.000000,43.000000, 0.742013,0.241613,0.007788,0.008586, rs-cluster-nonoverlapping-alleles 619 chr1 4533148 4533149 rs545201726 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4924.000000,84.000000, 0.983227,0.016773, 619 chr1 4533221 4533222 rs113940904 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 619 chr1 4533259 4533260 rs7526096 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop,maf-5-all-pops 619 chr1 4533271 4533272 rs7526157 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 569.000000,4439.000000, 0.113618,0.886382, maf-5-some-pop,maf-5-all-pops 619 chr1 4533531 4533532 rs12140591 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 619 chr1 4533535 4533536 rs74052807 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 919.000000,4089.000000, 0.183506,0.816494, maf-5-some-pop,maf-5-all-pops 619 chr1 4533539 4533540 rs12145023 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 619 chr1 4533631 4533632 rs12140626 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop 619 chr1 4533657 4533658 rs113191582 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 619 chr1 4533662 4533663 rs12143568 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 619 chr1 4533829 4533830 rs61771172 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 521.000000,4487.000000, 0.104034,0.895966, maf-5-some-pop 619 chr1 4533837 4533838 rs72633539 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop 619 chr1 4533864 4533864 rs149429945 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,SSMP, 2 -,C, 4489.000000,519.000000, 0.896366,0.103634, 619 chr1 4533894 4533895 rs61771173 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop,maf-5-all-pops 619 chr1 4533905 4533906 rs72633541 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop 619 chr1 4533938 4533939 rs72633542 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop 619 chr1 4533995 4533996 rs79555061 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop,maf-5-all-pops 619 chr1 4534012 4534013 rs72633543 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop 619 chr1 4534117 4534118 rs72633544 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop,maf-5-all-pops 619 chr1 4534181 4534182 rs12146146 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 G,T, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop 619 chr1 4534199 4534200 rs12146149 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,SC_SNP,SSMP,TISHKOFF, 2 C,T, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop 619 chr1 4534249 4534250 rs12116421 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop,maf-5-all-pops 619 chr1 4534294 4534295 rs112380333 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 619 chr1 4534320 4534321 rs10047182 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 922.000000,4086.000000, 0.184105,0.815895, maf-5-some-pop,maf-5-all-pops 619 chr1 4534349 4534350 rs12143782 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 619 chr1 4534465 4534466 rs535212327 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 82.000000,4926.000000, 0.016374,0.983626, 619 chr1 4534467 4534468 rs645723 0 - T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_JCM, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, 619 chr1 4534501 4534501 rs142727808 0 + - - -/ATGATATTGAA genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,ATGATATTGAA, 4491.000000,517.000000, 0.896765,0.103235, 619 chr1 4534519 4534520 rs350168 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4356.000000,652.000000, 0.869808,0.130192, maf-5-some-pop 619 chr1 4534645 4534646 rs61771174 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 619 chr1 4534859 4534860 rs11799294 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4113.000000,895.000000, 0.821286,0.178714, maf-5-some-pop,maf-5-all-pops 619 chr1 4534900 4534901 rs72633548 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 204.000000,4804.000000, 0.040735,0.959265, maf-5-some-pop 619 chr1 4534968 4534969 rs55653177 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4151.000000,857.000000, 0.828874,0.171126, maf-5-some-pop,maf-5-all-pops 619 chr1 4535083 4535084 rs113720775 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 619 chr1 4535147 4535148 rs7541288 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 619 chr1 4535214 4535215 rs61771176 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 519.000000,4489.000000, 0.103634,0.896366, maf-5-some-pop,maf-5-all-pops 619 chr1 4535453 4535454 rs7548176 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4504.000000,504.000000, 0.899361,0.100639, maf-5-some-pop 619 chr1 4535557 4535558 rs112627135 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 619 chr1 4535727 4535728 rs350169 0 + T T A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,T, 441.000000,4567.000000, 0.088059,0.911941, maf-5-some-pop 619 chr1 4535975 4535976 rs7548712 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4489.000000,519.000000, 0.896366,0.103634, maf-5-some-pop 619 chr1 4536568 4536569 rs61771190 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop,maf-5-all-pops 619 chr1 4537008 4537009 rs12141303 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 619 chr1 4537133 4537134 rs12138346 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop 619 chr1 4537293 4537294 rs192311663 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 619 chr1 4537296 4537297 rs35604764 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3457.000000,1551.000000, 0.690296,0.309704, maf-5-some-pop,maf-5-all-pops 619 chr1 4537819 4537820 rs7540923 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 520.000000,4488.000000, 0.103834,0.896166, maf-5-some-pop 619 chr1 4538273 4538274 rs11810490 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4647.000000,361.000000, 0.927915,0.072085, maf-5-some-pop,maf-5-all-pops 619 chr1 4538449 4538450 rs72850001 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 619 chr1 4538549 4538550 rs72633550 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 435.000000,4573.000000, 0.086861,0.913139, maf-5-some-pop,maf-5-all-pops 619 chr1 4538561 4538562 rs72633552 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop,maf-5-all-pops 619 chr1 4538600 4538601 rs149029945 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,G, 4956.000000,52.000000, 0.989617,0.010383, 619 chr1 4538619 4538620 rs11810861 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 855.000000,4153.000000, 0.170727,0.829273, maf-5-some-pop,maf-5-all-pops 619 chr1 4538620 4538621 rs116462672 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, maf-5-some-pop,maf-5-all-pops 619 chr1 4538838 4538839 rs115943814 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4949.000000,59.000000, 0.988219,0.011781, maf-5-some-pop,maf-5-all-pops 619 chr1 4538910 4538911 rs11811541 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4653.000000,355.000000, 0.929113,0.070887, maf-5-some-pop 619 chr1 4538922 4538923 rs61771191 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4490.000000,518.000000, 0.896565,0.103435, maf-5-some-pop,maf-5-all-pops 619 chr1 4538949 4538950 rs61771192 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 503.000000,4505.000000, 0.100439,0.899561, maf-5-some-pop 619 chr1 4539148 4539150 rs576455090 0 + TT TT -/TT genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TT, 897.000000,4111.000000, 0.179113,0.820887, 619 chr1 4539149 4539150 rs538156202 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,T, 1507.000000,3501.000000, 0.300919,0.699081, 619 chr1 4539245 4539246 rs610189 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 2486.000000,2522.000000, 0.496406,0.503594, maf-5-some-pop,maf-5-all-pops 619 chr1 4539310 4539311 rs56123656 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 518.000000,4490.000000, 0.103435,0.896565, maf-5-some-pop,maf-5-all-pops 619 chr1 4539805 4539806 rs72633554 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4488.000000,520.000000, 0.896166,0.103834, maf-5-some-pop 619 chr1 4540243 4540244 rs534486566 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 53.000000,4955.000000, 0.010583,0.989417, 619 chr1 4541043 4541044 rs638289 0 + A A A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1388.000000,3620.000000, 0.277157,0.722843, maf-5-some-pop,maf-5-all-pops 619 chr1 4541251 4541252 rs76642104 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 619 chr1 4541389 4541390 rs11799990 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 3572.000000,1436.000000, 0.713259,0.286741, maf-5-some-pop 619 chr1 4541465 4541466 rs115112844 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, maf-5-some-pop,maf-5-all-pops 619 chr1 4541549 4541550 rs61771193 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1293.000000,3715.000000, 0.258187,0.741813, maf-5-some-pop,maf-5-all-pops 619 chr1 4541659 4541660 rs76453659 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4494.000000,514.000000, 0.897364,0.102636, 619 chr1 4541734 4541735 rs12057544 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4206.000000,802.000000, 0.839856,0.160144, maf-5-some-pop 619 chr1 4541754 4541755 rs12094629 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 792.000000,4216.000000, 0.158147,0.841853, maf-5-some-pop 619 chr1 4541929 4541930 rs74052819 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 619 chr1 4542307 4542308 rs114240781 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 199.000000,4809.000000, 0.039736,0.960264, 619 chr1 4542318 4542319 rs115426399 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 619 chr1 4542560 4542561 rs13373852 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,TISHKOFF,WUGSC_SSAHASNP, 2 A,C, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop 619 chr1 4542700 4542701 rs72851510 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop,maf-5-all-pops 619 chr1 4543096 4543097 rs72851514 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, maf-5-some-pop,maf-5-all-pops 619 chr1 4543241 4543242 rs16839093 0 + T T A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 562.000000,4446.000000, 0.112220,0.887780, maf-5-some-pop 619 chr1 4543662 4543663 rs6656245 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 619 chr1 4543728 4543729 rs115654831 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4883.000000,125.000000, 0.975040,0.024960, 619 chr1 4543886 4543887 rs74050207 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, 619 chr1 4544233 4544234 rs114098860 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 619 chr1 4544305 4544306 rs72633558 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4787.000000,221.000000, 0.955871,0.044129, 619 chr1 4544462 4544463 rs116535129 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 619 chr1 4544587 4544587 rs147650992 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,C, 4575.000000,433.000000, 0.913538,0.086462, 619 chr1 4544702 4544704 rs75494322 0 + TC TC -/TC genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TC, 334.000000,4674.000000, 0.066693,0.933307, 619 chr1 4544814 4544815 rs16839098 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 232.000000,4776.000000, 0.046326,0.953674, maf-5-some-pop 619 chr1 4544960 4544961 rs58669532 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 619 chr1 4545212 4545213 rs350172 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop 619 chr1 4545414 4545415 rs74751902 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 619 chr1 4545994 4545995 rs116762592 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 619 chr1 4546180 4546181 rs10915547 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,SC_SNP, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, maf-5-some-pop,maf-5-all-pops 619 chr1 4546182 4546183 rs350173 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP, 2 C,T, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop 619 chr1 4546196 4546197 rs350174 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 C,T, 353.000000,4655.000000, 0.070487,0.929513, maf-5-some-pop 619 chr1 4546208 4546209 rs16839101 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4751.000000,257.000000, 0.948682,0.051318, maf-5-some-pop 619 chr1 4546338 4546339 rs114754327 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4917.000000,91.000000, 0.981829,0.018171, maf-5-some-pop,maf-5-all-pops 619 chr1 4546462 4546463 rs350175 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 A,G, 4676.000000,332.000000, 0.933706,0.066294, maf-5-some-pop 619 chr1 4546514 4546515 rs12046798 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 269.000000,4739.000000, 0.053714,0.946286, maf-5-some-pop,maf-5-all-pops 619 chr1 4546791 4546792 rs115660107 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 619 chr1 4547229 4547230 rs350176 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 G,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop 619 chr1 4547237 4547238 rs780605 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4314.000000,694.000000, 0.861422,0.138578, maf-5-some-pop 619 chr1 4547327 4547328 rs350177 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 A,G, 4709.000000,299.000000, 0.940296,0.059705, maf-5-some-pop 619 chr1 4547402 4547403 rs350178 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 A,G, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop 619 chr1 4547521 4547522 rs350179 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop,maf-5-all-pops 619 chr1 4547859 4547860 rs675942 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 296.000000,4712.000000, 0.059105,0.940895, maf-5-some-pop,maf-5-all-pops 619 chr1 4547862 4547863 rs639798 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop,maf-5-all-pops 619 chr1 4547988 4547989 rs350180 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 G,T, 4712.000000,296.000000, 0.940895,0.059105, maf-5-some-pop 619 chr1 4548087 4548088 rs350181 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 328.000000,4680.000000, 0.065495,0.934505, maf-5-some-pop 619 chr1 4548177 4548178 rs115397291 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 619 chr1 4548291 4548292 rs350182 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop 619 chr1 4548452 4548453 rs705687 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1097.000000,3911.000000, 0.219050,0.780950, maf-5-some-pop,maf-5-all-pops 619 chr1 4548520 4548521 rs545749419 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4674.000000,334.000000, 0.933307,0.066693, 619 chr1 4548617 4548618 rs350184 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 A,G, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 619 chr1 4548629 4548630 rs10799234 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2286.000000,2722.000000, 0.456470,0.543530, maf-5-some-pop,maf-5-all-pops 619 chr1 4548668 4548669 rs350185 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4677.000000,331.000000, 0.933906,0.066094, maf-5-some-pop,maf-5-all-pops 619 chr1 4549100 4549101 rs350186 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 A,C, 314.000000,4694.000000, 0.062700,0.937300, maf-5-some-pop 619 chr1 4549110 4549111 rs705688 0 + G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 731.000000,4277.000000, 0.145966,0.854034, maf-5-some-pop,maf-5-all-pops 619 chr1 4549234 4549235 rs72633565 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4761.000000,247.000000, 0.950679,0.049321, 619 chr1 4549329 4549330 rs72633568 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 247.000000,4761.000000, 0.049321,0.950679, 619 chr1 4549480 4549481 rs585641 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 619 chr1 4549481 4549482 rs667500 0 + G G C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP, 2 C,G, 313.000000,4695.000000, 0.062500,0.937500, maf-5-some-pop 619 chr1 4550103 4550104 rs706145 0 + G G A/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3899.000000,1109.000000, 0.778554,0.221446, maf-5-some-pop,maf-5-all-pops 619 chr1 4550176 4550177 rs350188 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4678.000000,330.000000, 0.934105,0.065895, maf-5-some-pop,maf-5-all-pops 619 chr1 4550546 4550547 rs780607 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 638.000000,4370.000000, 0.127396,0.872604, maf-5-some-pop 619 chr1 4550672 4550673 rs115856114 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 619 chr1 4550752 4550753 rs780608 0 + G G G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP, 2 G,T, 4372.000000,636.000000, 0.873003,0.126997, maf-5-some-pop 619 chr1 4551333 4551334 rs780609 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4374.000000,634.000000, 0.873403,0.126597, maf-5-some-pop 619 chr1 4551419 4551420 rs780610 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 634.000000,4374.000000, 0.126597,0.873403, maf-5-some-pop 619 chr1 4551454 4551455 rs780611 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4375.000000,633.000000, 0.873602,0.126398, maf-5-some-pop 619 chr1 4551470 4551471 rs780612 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 634.000000,4374.000000, 0.126597,0.873403, maf-5-some-pop 619 chr1 4551551 4551552 rs780613 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4374.000000,634.000000, 0.873403,0.126597, maf-5-some-pop 619 chr1 4551725 4551726 rs780615 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 687.000000,4321.000000, 0.137181,0.862819, maf-5-some-pop 619 chr1 4552088 4552089 rs350190 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,KWOK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop 619 chr1 4552322 4552323 rs350191 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop 619 chr1 4552481 4552482 rs116532395 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 222.000000,4786.000000, 0.044329,0.955671, maf-5-some-pop 619 chr1 4552496 4552497 rs115999094 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 619 chr1 4552801 4552802 rs1878052 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2237.000000,2771.000000, 0.446685,0.553315, maf-5-some-pop,maf-5-all-pops 619 chr1 4552971 4552972 rs75178978 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 220.000000,4788.000000, 0.043930,0.956070, 619 chr1 4553019 4553020 rs72851519 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 319.000000,4689.000000, 0.063698,0.936302, 619 chr1 4553244 4553245 rs350192 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 403.000000,4605.000000, 0.080471,0.919529, maf-5-some-pop 619 chr1 4554926 4554927 rs60275653 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop,maf-5-all-pops 619 chr1 4554943 4554944 rs350194 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 619 chr1 4554996 4554997 rs350195 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP, 2 C,G, 340.000000,4668.000000, 0.067891,0.932109, maf-5-some-pop,maf-5-all-pops 619 chr1 4555130 4555131 rs350196 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop 619 chr1 4555235 4555236 rs350197 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4628.000000,380.000000, 0.924121,0.075879, maf-5-some-pop 619 chr1 4555414 4555415 rs350198 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop 619 chr1 4555700 4555701 rs10737412 0 + T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2238.000000,2770.000000, 0.446885,0.553115, maf-5-some-pop,maf-5-all-pops 619 chr1 4555846 4555847 rs4654547 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2779.000000,2229.000000, 0.554912,0.445088, maf-5-some-pop,maf-5-all-pops 619 chr1 4555991 4555992 rs2446692 0 + C C C/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_JCM,SSMP, 2 C,G, 4704.000000,304.000000, 0.939297,0.060703, maf-5-some-pop 619 chr1 4556191 4556192 rs168406 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 4479.000000,529.000000, 0.894369,0.105631, maf-5-some-pop,maf-5-all-pops 619 chr1 4556322 4556323 rs239769 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 380.000000,4628.000000, 0.075879,0.924121, maf-5-some-pop 619 chr1 4556489 4556490 rs239770 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 381.000000,4627.000000, 0.076078,0.923922, maf-5-some-pop 619 chr1 4556662 4556663 rs171221 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop 619 chr1 4556892 4556893 rs350199 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop,maf-5-all-pops 619 chr1 4556985 4556986 rs61767760 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,HUMANGENOME_JCVI, 2 A,T, 564.000000,4444.000000, 0.112620,0.887380, 619 chr1 4556987 4556988 rs350200 0 + T T A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,HUMANGENOME_JCVI,KWOK,SC_JCM, 2 A,T, 819.000000,4189.000000, 0.163538,0.836462, 619 chr1 4557158 4557159 rs16839129 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,PERLEGEN, 2 A,C, 51.000000,4957.000000, 0.010184,0.989816, 619 chr1 4557316 4557317 rs780602 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3753.000000,1255.000000, 0.749401,0.250599, maf-5-some-pop 619 chr1 4557402 4557403 rs780603 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 5008.000000,0.000000, 1.000000,0.000000, 619 chr1 4557645 4557646 rs115462165 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 619 chr1 4557709 4557710 rs12124807 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 619 chr1 4557911 4557912 rs113821528 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 G,T, 53.000000,4955.000000, 0.010583,0.989417, 619 chr1 4558012 4558013 rs9659744 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2042.000000,2966.000000, 0.407748,0.592252, maf-5-some-pop,maf-5-all-pops 619 chr1 4558026 4558027 rs12029583 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 569.000000,4439.000000, 0.113618,0.886382, maf-5-some-pop,maf-5-all-pops 619 chr1 4558257 4558258 rs11800695 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 326.000000,4682.000000, 0.065096,0.934904, 619 chr1 4558391 4558392 rs7521366 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, 619 chr1 4558791 4558792 rs10915548 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1992.000000,3016.000000, 0.397764,0.602236, maf-5-some-pop,maf-5-all-pops 619 chr1 4558971 4558972 rs13374152 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 557.000000,4451.000000, 0.111222,0.888778, maf-5-some-pop 619 chr1 4559216 4559217 rs10799235 0 + G G C/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2664.000000,2344.000000, 0.531949,0.468051, maf-5-some-pop,maf-5-all-pops 619 chr1 4559483 4559484 rs616317 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 A,C, 446.000000,4562.000000, 0.089057,0.910942, maf-5-some-pop 619 chr1 4559606 4559607 rs71640930 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,T, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 619 chr1 4560132 4560133 rs12726598 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,T, 4829.000000,179.000000, 0.964257,0.035743, 619 chr1 4560231 4560232 rs6661118 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,G, 120.000000,4888.000000, 0.023962,0.976038, 619 chr1 4560246 4560247 rs630171 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,HUMANGENOME_JCVI,KWOK,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP, 2 G,T, 493.000000,4515.000000, 0.098443,0.901558, 619 chr1 4560255 4560256 rs625716 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,KWOK,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 A,C, 4516.000000,492.000000, 0.901757,0.098243, 619 chr1 4560346 4560347 rs626160 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,KWOK,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4649.000000,359.000000, 0.928315,0.071685, 619 chr1 4560347 4560348 rs113688204 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 A,G, 346.000000,4662.000000, 0.069090,0.930911, 619 chr1 4560392 4560393 rs111566563 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 557.000000,4451.000000, 0.111222,0.888778, 619 chr1 4560404 4560405 rs9660574 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2562.000000,2446.000000, 0.511581,0.488419, maf-5-some-pop,maf-5-all-pops 619 chr1 4560539 4560541 rs144749600 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,AG, 68.000000,4940.000000, 0.013578,0.986422, 619 chr1 4560587 4560588 rs112798039 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4665.000000,343.000000, 0.931510,0.068490, maf-5-some-pop,maf-5-all-pops 619 chr1 4560778 4560779 rs632399 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 A,G, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop,maf-5-all-pops 619 chr1 4560792 4560793 rs115470179 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop,maf-5-all-pops 619 chr1 4560812 4560813 rs137949242 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, 619 chr1 4560870 4560871 rs675509 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1518.000000,3490.000000, 0.303115,0.696885, maf-5-some-pop,maf-5-all-pops 619 chr1 4560960 4560961 rs675641 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1499.000000,3509.000000, 0.299321,0.700679, maf-5-some-pop,maf-5-all-pops 619 chr1 4561136 4561137 rs676494 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 C,G, 4630.000000,378.000000, 0.924521,0.075479, maf-5-some-pop 619 chr1 4561160 4561161 rs78030810 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 619 chr1 4561164 4561165 rs676853 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 A,C, 368.000000,4640.000000, 0.073482,0.926518, maf-5-some-pop 619 chr1 4561204 4561204 rs572105507 0 + - - -/GG genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,GG, 4633.000000,375.000000, 0.925120,0.074880, 619 chr1 4561260 4561264 rs140121366 0 + AGTC AGTC -/AGTC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,AGTC, 378.000000,4630.000000, 0.075479,0.924521, 619 chr1 4561419 4561420 rs114836359 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop,maf-5-all-pops 619 chr1 4561466 4561467 rs678246 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 G,T, 490.000000,4518.000000, 0.097843,0.902156, maf-5-some-pop 619 chr1 4561830 4561831 rs12760236 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 120.000000,4888.000000, 0.023962,0.976038, maf-5-some-pop,maf-5-all-pops 619 chr1 4561961 4561962 rs582598 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 A,C, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop 619 chr1 4562044 4562045 rs583027 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SSMP, 2 C,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 619 chr1 4562138 4562139 rs144491926 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,SSMP,WARNICH_LAB, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, 619 chr1 4562269 4562270 rs11802495 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 365.000000,4643.000000, 0.072883,0.927117, maf-5-some-pop 619 chr1 4562349 4562350 rs660100 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP, 2 A,G, 4497.000000,511.000000, 0.897963,0.102037, maf-5-some-pop 619 chr1 4562475 4562476 rs4654548 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3002.000000,2006.000000, 0.599441,0.400559, maf-5-some-pop,maf-5-all-pops 619 chr1 4562722 4562723 rs114739966 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 619 chr1 4562751 4562752 rs661886 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1485.000000,3523.000000, 0.296526,0.703474, maf-5-some-pop,maf-5-all-pops 619 chr1 4562896 4562897 rs597453 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3523.000000,1485.000000, 0.703474,0.296526, maf-5-some-pop,maf-5-all-pops 619 chr1 4563054 4563055 rs35786528 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BILGI_BIOE,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,T, 3688.000000,1320.000000, 0.736422,0.263578, 619 chr1 4563128 4563129 rs6681032 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop 619 chr1 4563163 4563164 rs113086826 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4642.000000,366.000000, 0.926917,0.073083, maf-5-some-pop,maf-5-all-pops 619 chr1 4563324 4563325 rs71640931 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop,maf-5-all-pops 619 chr1 4563497 4563498 rs11803334 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,SSMP, 2 A,G, 57.000000,4951.000000, 0.011382,0.988618, 619 chr1 4563541 4563542 rs675748 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP, 2 C,T, 4498.000000,510.000000, 0.898163,0.101837, maf-5-some-pop 619 chr1 4563644 4563645 rs600649 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KWOK,SC_JCM,SSMP, 2 C,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 619 chr1 4564006 4564007 rs10799237 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2637.000000,2371.000000, 0.526558,0.473442, maf-5-some-pop,maf-5-all-pops 619 chr1 4564129 4564130 rs112856178 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4642.000000,366.000000, 0.926917,0.073083, maf-5-some-pop 619 chr1 4564233 4564234 rs114670477 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 619 chr1 4564341 4564342 rs35933446 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,EVA-GONL,LUNTER,SSMP, 2 -,G, 120.000000,4888.000000, 0.023962,0.976038, 619 chr1 4564487 4564488 rs114197657 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4949.000000,59.000000, 0.988219,0.011781, 619 chr1 4564488 4564489 rs114161297 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 619 chr1 4564812 4564813 rs16839156 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 366.000000,4642.000000, 0.073083,0.926917, maf-5-some-pop 619 chr1 4564852 4564853 rs111706063 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,ILLUMINA, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 619 chr1 4565196 4565197 rs4654549 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1889.000000,3119.000000, 0.377196,0.622804, maf-5-some-pop,maf-5-all-pops 619 chr1 4565379 4565380 rs4654439 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2341.000000,2667.000000, 0.467452,0.532548, maf-5-some-pop,maf-5-all-pops 619 chr1 4565489 4565490 rs4654550 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4453.000000,555.000000, 0.889177,0.110823, maf-5-some-pop 619 chr1 4565572 4565573 rs12127878 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 135.000000,4873.000000, 0.026957,0.973043, maf-5-some-pop 619 chr1 4565682 4565683 rs138356878 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 619 chr1 4565693 4565694 rs33984734 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BILGI_BIOE,BL,EVA-GONL,GMI,HGSV,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 4163.000000,845.000000, 0.831270,0.168730, 619 chr1 4565842 4565843 rs16839157 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4455.000000,553.000000, 0.889577,0.110423, maf-5-some-pop 619 chr1 4565905 4565906 rs10753381 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1989.000000,3019.000000, 0.397165,0.602835, maf-5-some-pop,maf-5-all-pops 619 chr1 4565950 4565951 rs12133282 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 G,T, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 619 chr1 4565970 4565971 rs35106640 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,BUSHMAN,ENSEMBL, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, maf-5-some-pop,maf-5-all-pops 619 chr1 4566018 4566023 rs113100348 0 + ACAGA ACAGA -/ACAGA genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,LUNTER,SSMP, 2 -,ACAGA, 3152.000000,1856.000000, 0.629393,0.370607, 619 chr1 4566052 4566053 rs10753382 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 3115.000000,1893.000000, 0.622005,0.377995, maf-5-some-pop,maf-5-all-pops 619 chr1 4566064 4566065 rs4654440 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1842.000000,3166.000000, 0.367812,0.632188, maf-5-some-pop,maf-5-all-pops 619 chr1 4566174 4566175 rs4654551 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3156.000000,1852.000000, 0.630192,0.369808, maf-5-some-pop,maf-5-all-pops 619 chr1 4566417 4566418 rs34567044 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop,maf-5-all-pops 619 chr1 4566476 4566477 rs11802243 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,G, 366.000000,4642.000000, 0.073083,0.926917, maf-5-some-pop 619 chr1 4566514 4566515 rs4654441 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2998.000000,2010.000000, 0.598642,0.401358, maf-5-some-pop,maf-5-all-pops 619 chr1 4566554 4566554 rs34356738 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 6 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,LUNTER,SSMP, 2 -,T, 4873.000000,135.000000, 0.973043,0.026957, 619 chr1 4566640 4566641 rs71640932 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 619 chr1 4566730 4566731 rs7537577 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3171.000000,1837.000000, 0.633187,0.366813, maf-5-some-pop,maf-5-all-pops 619 chr1 4567157 4567158 rs350163 0 - G G A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 5 1000GENOMES,BUSHMAN,EVA-GONL,KWOK,SC_JCM, 4 A,C,G,T, 5.000000,5003.000000,5003.000000,5.000000, 0.000499,0.499501,0.499501,0.000499, 619 chr1 4567160 4567161 rs34514182 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 619 chr1 4567164 4567165 rs1018306 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3033.000000,1975.000000, 0.605631,0.394369, maf-5-some-pop,maf-5-all-pops 619 chr1 4567348 4567349 rs34277615 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 G,T, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 619 chr1 4567380 4567381 rs35491786 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop 619 chr1 4567439 4567440 rs58671702 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 C,T, 619.000000,4389.000000, 0.123602,0.876398, maf-5-some-pop,maf-5-all-pops 619 chr1 4567544 4567545 rs67730686 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 555.000000,4453.000000, 0.110823,0.889177, maf-5-some-pop,maf-5-all-pops 619 chr1 4567632 4567633 rs36067724 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,G, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 619 chr1 4568141 4568142 rs350162 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP, 2 A,G, 307.000000,4701.000000, 0.061302,0.938698, maf-5-some-pop 619 chr1 4568193 4568194 rs10799239 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 G,T, 1842.000000,3166.000000, 0.367812,0.632188, 619 chr1 4568227 4568228 rs10799240 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1536.000000,3472.000000, 0.306709,0.693291, 619 chr1 4568426 4568427 rs706147 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,KWOK,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4182.000000,826.000000, 0.835064,0.164936, 619 chr1 4568443 4568444 rs138725833 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4913.000000,95.000000, 0.981030,0.018970, 619 chr1 4568616 4568617 rs559904182 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 148.000000,4860.000000, 0.029553,0.970447, 619 chr1 4568617 4568617 rs530207822 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,A, 4941.000000,67.000000, 0.986621,0.013379, 619 chr1 4568688 4568689 rs116503651 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, maf-5-some-pop,maf-5-all-pops 619 chr1 4568699 4568700 rs706146 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 721.000000,4287.000000, 0.143970,0.856030, maf-5-some-pop 619 chr1 4568867 4568868 rs72633589 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,G, 257.000000,4751.000000, 0.051318,0.948682, maf-5-some-pop,maf-5-all-pops 619 chr1 4568899 4568900 rs60725706 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,HGSV, 2 C,T, 2332.000000,2676.000000, 0.465655,0.534345, maf-5-some-pop,maf-5-all-pops 619 chr1 4569111 4569112 rs113715595 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 619 chr1 4569164 4569164 rs71580268 0 + - - -/TGTGTG genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,HUMANGENOME_JCVI,LUNTER, 2 -,TGTGTG, 2486.000000,2522.000000, 0.496406,0.503594, 619 chr1 4569376 4569377 rs78836683 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 619 chr1 4569382 4569383 rs12031045 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop,maf-5-all-pops 619 chr1 4569435 4569436 rs780569 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3488.000000,1520.000000, 0.696486,0.303514, maf-5-some-pop 619 chr1 4569457 4569458 rs12035160 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4346.000000,662.000000, 0.867812,0.132188, maf-5-some-pop,maf-5-all-pops 619 chr1 4569546 4569547 rs10799241 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2869.000000,2139.000000, 0.572883,0.427117, maf-5-some-pop,maf-5-all-pops 619 chr1 4569659 4569660 rs16839168 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 662.000000,4346.000000, 0.132188,0.867812, maf-5-some-pop 619 chr1 4569694 4569695 rs16839171 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 4346.000000,662.000000, 0.867812,0.132188, maf-5-some-pop 619 chr1 4570275 4570276 rs16839175 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 576.000000,4432.000000, 0.115016,0.884984, maf-5-some-pop 619 chr1 4570302 4570302 rs34280110 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 4024.000000,984.000000, 0.803514,0.196486, 619 chr1 4570365 4570366 rs113522076 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 619 chr1 4570636 4570637 rs1762823 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP, 2 C,T, 4686.000000,322.000000, 0.935703,0.064297, maf-5-some-pop 619 chr1 4570981 4570982 rs4654552 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4347.000000,661.000000, 0.868011,0.131989, maf-5-some-pop 619 chr1 4571376 4571377 rs111996650 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 619 chr1 4571638 4571639 rs111273657 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4921.000000,87.000000, 0.982628,0.017372, 619 chr1 4571655 4571656 rs75464060 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 294.000000,4714.000000, 0.058706,0.941294, maf-5-some-pop,maf-5-all-pops 619 chr1 4571717 4571718 rs1762824 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP, 2 A,G, 666.000000,4342.000000, 0.132987,0.867013, maf-5-some-pop 619 chr1 4571827 4571828 rs61765365 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 496.000000,4512.000000, 0.099041,0.900958, maf-5-some-pop,maf-5-all-pops 619 chr1 4571877 4571878 rs115793048 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 61.000000,4947.000000, 0.012180,0.987819, 619 chr1 4571945 4571946 rs1762825 0 + T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3409.000000,1599.000000, 0.680711,0.319289, maf-5-some-pop,maf-5-all-pops 619 chr1 4571950 4571951 rs112910826 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 619 chr1 4571953 4571954 rs12747482 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 612.000000,4396.000000, 0.122204,0.877796, maf-5-some-pop,maf-5-all-pops 619 chr1 4571977 4571978 rs116676579 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 619 chr1 4572022 4572023 rs10915549 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1924.000000,3084.000000, 0.384185,0.615815, maf-5-some-pop,maf-5-all-pops 619 chr1 4572139 4572140 rs4654442 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2585.000000,2423.000000, 0.516174,0.483826, maf-5-some-pop,maf-5-all-pops 619 chr1 4572463 4572464 rs112769653 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop,maf-5-all-pops 619 chr1 4572530 4572533 rs149013298 0 + AAG AAG -/AAG genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,LUNTER,PJP,SSMP, 2 -,AAG, 119.000000,4889.000000, 0.023762,0.976238, 619 chr1 4572752 4572753 rs74830357 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BGI,SSMP, 2 A,T, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop,maf-5-all-pops 619 chr1 4572799 4572800 rs71640933 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4399.000000,609.000000, 0.878395,0.121605, maf-5-some-pop,maf-5-all-pops 619 chr1 4572833 4572834 rs1762827 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 816.000000,4192.000000, 0.162939,0.837061, maf-5-some-pop 619 chr1 4573098 4573099 rs4480324 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1595.000000,3413.000000, 0.318490,0.681510, maf-5-some-pop,maf-5-all-pops 619 chr1 4573133 4573134 rs4323680 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3973.000000,1035.000000, 0.793331,0.206669, maf-5-some-pop,maf-5-all-pops 619 chr1 4573156 4573157 rs4437847 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4038.000000,970.000000, 0.806310,0.193690, maf-5-some-pop,maf-5-all-pops 619 chr1 4573241 4573242 rs4442344 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4037.000000,971.000000, 0.806110,0.193890, maf-5-some-pop,maf-5-all-pops 619 chr1 4573362 4573363 rs12134323 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4397.000000,611.000000, 0.877995,0.122005, maf-5-some-pop,maf-5-all-pops 619 chr1 4573459 4573460 rs1710418 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 914.000000,4094.000000, 0.182508,0.817492, maf-5-some-pop,maf-5-all-pops 619 chr1 4573685 4573686 rs1710419 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2885.000000,2123.000000, 0.576078,0.423922, maf-5-some-pop,maf-5-all-pops 619 chr1 4573797 4573798 rs75494587 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop 619 chr1 4573803 4573804 rs1710420 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1935.000000,3073.000000, 0.386382,0.613618, maf-5-some-pop,maf-5-all-pops 619 chr1 4573900 4573901 rs114094597 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 619 chr1 4573988 4573989 rs1710421 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1055.000000,3953.000000, 0.210663,0.789337, maf-5-some-pop,maf-5-all-pops 619 chr1 4574089 4574090 rs79383560 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4570.000000,438.000000, 0.912540,0.087460, maf-5-some-pop,maf-5-all-pops 619 chr1 4574116 4574117 rs1710422 0 + C C C/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1384.000000,3624.000000, 0.276358,0.723642, maf-5-some-pop 619 chr1 4574136 4574137 rs1710423 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4060.000000,948.000000, 0.810703,0.189297, maf-5-some-pop,maf-5-all-pops 619 chr1 4574440 4574441 rs112182215 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 287.000000,4721.000000, 0.057308,0.942692, maf-5-some-pop,maf-5-all-pops 619 chr1 4575000 4575001 rs1710424 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 895.000000,4113.000000, 0.178714,0.821286, maf-5-some-pop,maf-5-all-pops 619 chr1 4575192 4575193 rs7547285 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,G, 68.000000,4940.000000, 0.013578,0.986422, 619 chr1 4575287 4575288 rs12036337 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 627.000000,4381.000000, 0.125200,0.874800, 619 chr1 4575335 4575336 rs1710427 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP, 2 A,G, 4273.000000,735.000000, 0.853235,0.146765, maf-5-some-pop 619 chr1 4575452 4575453 rs7520856 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 62.000000,4946.000000, 0.012380,0.987620, 619 chr1 4575521 4575522 rs10915550 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3540.000000,1468.000000, 0.706869,0.293131, maf-5-some-pop,maf-5-all-pops 619 chr1 4575666 4575667 rs1399848 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 731.000000,4277.000000, 0.145966,0.854034, maf-5-some-pop 619 chr1 4575671 4575672 rs1399849 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 731.000000,4277.000000, 0.145966,0.854034, maf-5-some-pop 619 chr1 4575915 4575916 rs1399850 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,T, 4279.000000,729.000000, 0.854433,0.145567, maf-5-some-pop 619 chr1 4576200 4576201 rs114344905 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 619 chr1 4576250 4576251 rs11806454 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 440.000000,4568.000000, 0.087859,0.912141, maf-5-some-pop 619 chr1 4576431 4576432 rs80285175 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop,maf-5-all-pops 619 chr1 4576474 4576475 rs1762830 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 1128.000000,3880.000000, 0.225240,0.774760, maf-5-some-pop 619 chr1 4576496 4576497 rs114161221 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,maf-5-all-pops 619 chr1 4576497 4576498 rs1762831 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 1129.000000,3879.000000, 0.225439,0.774561, maf-5-some-pop,maf-5-all-pops 619 chr1 4576583 4576584 rs111539215 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 A,C, 53.000000,4955.000000, 0.010583,0.989417, 619 chr1 4576644 4576645 rs76978141 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, 619 chr1 4576790 4576791 rs1878053 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,TISHKOFF,TSC-CSHL, 2 C,T, 4811.000000,197.000000, 0.960663,0.039337, maf-5-some-pop,maf-5-all-pops 619 chr1 4576796 4576797 rs1710430 0 + C C C/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 1032.000000,3976.000000, 0.206070,0.793930, maf-5-some-pop,maf-5-all-pops 619 chr1 4576969 4576970 rs670296 0 + G G A/G genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2160.000000,2848.000000, 0.431310,0.568690, maf-5-some-pop 619 chr1 4576986 4576987 rs7536708 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 G,T, 4603.000000,405.000000, 0.919129,0.080871, maf-5-some-pop 619 chr1 4577093 4577094 rs111642912 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, maf-5-some-pop,maf-5-all-pops 619 chr1 4577119 4577120 rs4654443 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4391.000000,617.000000, 0.876797,0.123203, maf-5-some-pop 619 chr1 4577173 4577174 rs115793042 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 619 chr1 4577263 4577264 rs7545719 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,WI_SSAHASNP, 2 C,T, 4600.000000,408.000000, 0.918530,0.081470, maf-5-some-pop 619 chr1 4577407 4577408 rs113549510 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 134.000000,4874.000000, 0.026757,0.973243, maf-5-some-pop,maf-5-all-pops 619 chr1 4577600 4577601 rs12406566 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4575.000000,433.000000, 0.913538,0.086462, maf-5-some-pop 619 chr1 4577627 4577628 rs12036603 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4383.000000,625.000000, 0.875200,0.124800, maf-5-some-pop,maf-5-all-pops 619 chr1 4577651 4577652 rs112686646 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 619 chr1 4577666 4577667 rs16839195 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4571.000000,437.000000, 0.912740,0.087260, maf-5-some-pop 619 chr1 4577713 4577713 rs148426356 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,C, 4944.000000,64.000000, 0.987220,0.012780, 619 chr1 4578170 4578171 rs112264431 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, 619 chr1 4578545 4578546 rs596607 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 2010.000000,2998.000000, 0.401358,0.598642, maf-5-some-pop,maf-5-all-pops 619 chr1 4578697 4578698 rs12039806 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 722.000000,4286.000000, 0.144169,0.855831, maf-5-some-pop,maf-5-all-pops 619 chr1 4578753 4578754 rs12039814 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 722.000000,4286.000000, 0.144169,0.855831, maf-5-some-pop,maf-5-all-pops 619 chr1 4578789 4578790 rs12038994 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4286.000000,722.000000, 0.855831,0.144169, maf-5-some-pop 619 chr1 4578848 4578849 rs67871439 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4286.000000,722.000000, 0.855831,0.144169, maf-5-some-pop,maf-5-all-pops 619 chr1 4579030 4579031 rs66487824 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4286.000000,722.000000, 0.855831,0.144169, maf-5-some-pop,maf-5-all-pops 619 chr1 4579112 4579113 rs116205137 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 619 chr1 4579130 4579131 rs12039070 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4286.000000,722.000000, 0.855831,0.144169, maf-5-some-pop,maf-5-all-pops 619 chr1 4579170 4579171 rs74224244 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4765.000000,243.000000, 0.951478,0.048522, maf-5-some-pop,maf-5-all-pops 619 chr1 4579174 4579175 rs12034930 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 722.000000,4286.000000, 0.144169,0.855831, maf-5-some-pop,maf-5-all-pops 619 chr1 4579212 4579213 rs12039100 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4286.000000,722.000000, 0.855831,0.144169, maf-5-some-pop,maf-5-all-pops 619 chr1 4579233 4579234 rs116415025 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 619 chr1 4579238 4579239 rs12039101 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3004.000000,2004.000000, 0.599840,0.400160, maf-5-some-pop,maf-5-all-pops 619 chr1 4579257 4579258 rs1229148 0 + A A A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop,maf-5-all-pops 619 chr1 4579319 4579319 rs201073026 0 + - - -/ACC genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,GMI, 2 -,ACC, 4865.000000,143.000000, 0.971446,0.028554, 619 chr1 4579325 4579326 rs116376233 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 619 chr1 4579367 4579368 rs7545598 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 619 chr1 4579665 4579666 rs554277979 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 91.000000,4917.000000, 0.018171,0.981829, 619 chr1 4579732 4579733 rs12035830 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 717.000000,4291.000000, 0.143171,0.856829, maf-5-some-pop,maf-5-all-pops 619 chr1 4579825 4579826 rs112959246 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop,maf-5-all-pops 619 chr1 4579980 4579981 rs13375249 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop,maf-5-all-pops 619 chr1 4580013 4580014 rs12406335 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 406.000000,4602.000000, 0.081070,0.918930, maf-5-some-pop 619 chr1 4580134 4580135 rs13375764 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 726.000000,4282.000000, 0.144968,0.855032, maf-5-some-pop 619 chr1 4580170 4580171 rs116603006 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 619 chr1 4580207 4580208 rs56226943 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop,maf-5-all-pops 619 chr1 4580217 4580218 rs115165414 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 619 chr1 4580336 4580337 rs112408754 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 619 chr1 4580338 4580339 rs114193182 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,maf-5-all-pops 619 chr1 4580451 4580452 rs12135381 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4574.000000,434.000000, 0.913339,0.086661, maf-5-some-pop 619 chr1 4580494 4580495 rs111951125 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 619 chr1 4580556 4580557 rs72634904 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SSMP,TISHKOFF, 2 C,T, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop 619 chr1 4580562 4580563 rs564252783 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4624.000000,384.000000, 0.923323,0.076677, 619 chr1 4580699 4580700 rs61765366 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 3586.000000,1422.000000, 0.716054,0.283946, maf-5-some-pop,maf-5-all-pops 619 chr1 4581229 4581230 rs12039682 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4293.000000,715.000000, 0.857228,0.142772, maf-5-some-pop 619 chr1 4581847 4581848 rs7516166 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,WI_SSAHASNP, 2 C,T, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop 619 chr1 4581952 4581953 rs34806922 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,LUNTER,PJP, 2 -,A, 91.000000,4917.000000, 0.018171,0.981829, 619 chr1 4581993 4581994 rs112926847 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop,maf-5-all-pops 619 chr1 4582088 4582089 rs518456 0 + T T G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2182.000000,2826.000000, 0.435703,0.564297, maf-5-some-pop,maf-5-all-pops 619 chr1 4582095 4582096 rs57010025 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 C,T, 4293.000000,715.000000, 0.857228,0.142772, maf-5-some-pop,maf-5-all-pops 619 chr1 4582157 4582158 rs116185048 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 619 chr1 4582278 4582279 rs57559146 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4292.000000,716.000000, 0.857029,0.142971, maf-5-some-pop,maf-5-all-pops 619 chr1 4582561 4582562 rs60071491 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 716.000000,4292.000000, 0.142971,0.857029, maf-5-some-pop,maf-5-all-pops 619 chr1 4582832 4582833 rs4112336 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,SC_JCM,TSC-CSHL, 2 A,C, 87.000000,4921.000000, 0.017372,0.982628, 619 chr1 4582849 4582850 rs551304319 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4907.000000,101.000000, 0.979832,0.020168, 619 chr1 4582895 4582896 rs1229150 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3528.000000,1480.000000, 0.704473,0.295527, maf-5-some-pop,maf-5-all-pops 619 chr1 4582923 4582924 rs1229151 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,GMI,HGSV,ILLUMINA-UK,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1480.000000,3528.000000, 0.295527,0.704473, 619 chr1 4582943 4582944 rs535893295 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 91.000000,4917.000000, 0.018171,0.981829, 619 chr1 4583447 4583448 rs55989806 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB, 2 A,C, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 619 chr1 4583482 4583483 rs114356706 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, maf-5-some-pop,maf-5-all-pops 619 chr1 4583972 4583973 rs76210017 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4766.000000,242.000000, 0.951677,0.048323, maf-5-some-pop,maf-5-all-pops 619 chr1 4584317 4584318 rs241241 0 - A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 619 chr1 4584349 4584350 rs111999731 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, maf-5-some-pop,maf-5-all-pops 619 chr1 4584611 4584611 rs3059158 0 + - - -/CT genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,ABI,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,TISHKOFF,TSC-CSHL, 2 -,CT, 3018.000000,1990.000000, 0.602636,0.397364, 619 chr1 4584691 4584692 rs6661491 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 404.000000,4604.000000, 0.080671,0.919329, maf-5-some-pop 619 chr1 4584875 4584876 rs116503693 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4871.000000,137.000000, 0.972644,0.027356, 619 chr1 4584939 4584940 rs116120076 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4955.000000,53.000000, 0.989417,0.010583, maf-5-some-pop,maf-5-all-pops 619 chr1 4585236 4585237 rs116795857 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 619 chr1 4585290 4585291 rs111989214 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,GMI,SSMP, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, 619 chr1 4585613 4585614 rs115960772 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 619 chr1 4585760 4585761 rs12140693 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4568.000000,440.000000, 0.912141,0.087859, maf-5-some-pop 619 chr1 4586175 4586176 rs115769280 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 619 chr1 4586350 4586351 rs116585467 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4873.000000,135.000000, 0.973043,0.026957, maf-5-some-pop,maf-5-all-pops 619 chr1 4586511 4586512 rs12040164 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4381.000000,627.000000, 0.874800,0.125200, maf-5-some-pop,maf-5-all-pops 619 chr1 4586529 4586530 rs6664407 0 + A A A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 4603.000000,405.000000, 0.919129,0.080871, maf-5-some-pop 619 chr1 4586605 4586606 rs780983 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4184.000000,824.000000, 0.835463,0.164537, maf-5-some-pop,maf-5-all-pops 619 chr1 4586606 4586607 rs111878826 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,ILLUMINA, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, maf-5-some-pop,maf-5-all-pops 619 chr1 4586669 4586670 rs71640934 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 C,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 619 chr1 4586792 4586793 rs368025091 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, 619 chr1 4586851 4586852 rs113479177 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop,maf-5-all-pops 619 chr1 4586980 4586981 rs35808993 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,LUNTER,PJP, 2 -,A, 61.000000,4947.000000, 0.012180,0.987819, 619 chr1 4587084 4587085 rs111257288 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,T, 4952.000000,56.000000, 0.988818,0.011182, 619 chr1 4587090 4587091 rs35008308 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4886.000000,122.000000, 0.975639,0.024361, maf-5-some-pop,maf-5-all-pops 619 chr1 4587176 4587177 rs241239 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4302.000000,706.000000, 0.859026,0.140974, maf-5-some-pop 619 chr1 4587518 4587519 rs241238 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3716.000000,1292.000000, 0.742013,0.257987, maf-5-some-pop 620 chr1 4587559 4587560 rs115417820 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 101.000000,4907.000000, 0.020168,0.979832, maf-5-some-pop,maf-5-all-pops 620 chr1 4587594 4587595 rs10915551 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4573.000000,435.000000, 0.913139,0.086861, maf-5-some-pop 620 chr1 4587879 4587880 rs17348762 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 404.000000,4604.000000, 0.080671,0.919329, maf-5-some-pop 620 chr1 4588125 4588126 rs11807073 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 430.000000,4578.000000, 0.085863,0.914137, maf-5-some-pop,maf-5-all-pops 620 chr1 4588324 4588329 rs113612242 0 + CTTTC CTTTC -/CTTTC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BUSHMAN,LUNTER,SSMP, 2 -,CTTTC, 62.000000,4946.000000, 0.012380,0.987620, 620 chr1 4588729 4588730 rs67056407 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 675.000000,4333.000000, 0.134784,0.865216, maf-5-some-pop,maf-5-all-pops 620 chr1 4588788 4588789 rs116105448 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 4880.000000,128.000000, 0.974441,0.025559, maf-5-some-pop,maf-5-all-pops 620 chr1 4589249 4589250 rs143203153 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 102.000000,4906.000000, 0.020367,0.979633, 620 chr1 4589367 4589368 rs149018538 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4912.000000,96.000000, 0.980831,0.019169, 620 chr1 4589389 4589389 rs34846714 0 + - - -/AA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,ABI,BUSHMAN,HUMANGENOME_JCVI, 2 -,AA, 4626.000000,382.000000, 0.923722,0.076278, 620 chr1 4589405 4589406 rs112518418 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,TISHKOFF, 2 C,T, 4255.000000,753.000000, 0.849641,0.150359, 620 chr1 4590125 4590126 rs114542385 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 620 chr1 4590126 4590127 rs115197679 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, maf-5-some-pop,maf-5-all-pops 620 chr1 4590799 4590800 rs149334872 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 G,T, 4937.000000,71.000000, 0.985823,0.014177, 620 chr1 4591079 4591080 rs12755100 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 618.000000,4390.000000, 0.123403,0.876597, maf-5-some-pop 620 chr1 4591084 4591085 rs12567893 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,G, 4175.000000,833.000000, 0.833666,0.166334, maf-5-some-pop 620 chr1 4591787 4591788 rs201267691 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 C,T, 4457.000000,551.000000, 0.889976,0.110024, 620 chr1 4592158 4592159 rs67546827 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4405.000000,603.000000, 0.879593,0.120407, maf-5-some-pop,maf-5-all-pops 620 chr1 4592758 4592759 rs116758835 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, maf-5-some-pop,maf-5-all-pops 620 chr1 4593241 4593242 rs6681038 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 620 chr1 4593372 4593373 rs61104963 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 620 chr1 4593896 4593897 rs79500605 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 336.000000,4672.000000, 0.067093,0.932907, maf-5-some-pop,maf-5-all-pops 620 chr1 4594195 4594196 rs77731584 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 620 chr1 4594307 4594308 rs74494657 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4705.000000,303.000000, 0.939497,0.060503, maf-5-some-pop 620 chr1 4594364 4594365 rs112396140 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 620 chr1 4594405 4594406 rs74410595 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 4705.000000,303.000000, 0.939497,0.060503, maf-5-some-pop,maf-5-all-pops 620 chr1 4594625 4594626 rs111372095 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4864.000000,144.000000, 0.971246,0.028754, maf-5-some-pop,maf-5-all-pops 620 chr1 4594771 4594772 rs112134215 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4772.000000,236.000000, 0.952875,0.047125, maf-5-some-pop,maf-5-all-pops 620 chr1 4594997 4594998 rs34231005 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 G,T, 1520.000000,3488.000000, 0.303514,0.696486, maf-5-some-pop,maf-5-all-pops 620 chr1 4595150 4595151 rs10915552 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3697.000000,1311.000000, 0.738219,0.261781, maf-5-some-pop,maf-5-all-pops 620 chr1 4595292 4595293 rs116361776 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4953.000000,55.000000, 0.989018,0.010982, maf-5-some-pop,maf-5-all-pops 620 chr1 4595296 4595297 rs60228909 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 665.000000,4343.000000, 0.132788,0.867212, maf-5-some-pop,maf-5-all-pops 620 chr1 4595406 4595407 rs6690385 0 + C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BUSHMAN,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 4154.000000,854.000000, 0.829473,0.170527, maf-5-some-pop 620 chr1 4595561 4595562 rs111437337 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 398.000000,4610.000000, 0.079473,0.920527, maf-5-some-pop,maf-5-all-pops 620 chr1 4596008 4596009 rs548432785 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 1691.000000,3317.000000, 0.337660,0.662340, 620 chr1 4596010 4596011 rs113955068 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BCM-HGSC-SUB,GMI, 2 A,C, 3320.000000,1688.000000, 0.662939,0.337061, 620 chr1 4596277 4596278 rs10915553 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3324.000000,1684.000000, 0.663738,0.336262, maf-5-some-pop,maf-5-all-pops 620 chr1 4596287 4596288 rs10915554 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSAHASNP,SSMP, 2 A,G, 3325.000000,1683.000000, 0.663938,0.336062, maf-5-some-pop,maf-5-all-pops 620 chr1 4596533 4596534 rs12084169 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 1688.000000,3320.000000, 0.337061,0.662939, maf-5-some-pop,maf-5-all-pops 620 chr1 4596563 4596564 rs12086217 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 1688.000000,3320.000000, 0.337061,0.662939, maf-5-some-pop,maf-5-all-pops 620 chr1 4596699 4596700 rs12080165 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 4109.000000,899.000000, 0.820487,0.179513, maf-5-some-pop,maf-5-all-pops 620 chr1 4596713 4596714 rs115820878 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 126.000000,4882.000000, 0.025160,0.974840, maf-5-some-pop,maf-5-all-pops 620 chr1 4596984 4596985 rs34921408 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 500.000000,4508.000000, 0.099840,0.900160, 620 chr1 4597081 4597082 rs623217 0 - G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 620 chr1 4597461 4597462 rs16838461 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop,maf-5-all-pops 620 chr1 4597697 4597697 rs34232961 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,ABI,BILGI_BIOE,PJP,SSMP, 2 -,A, 2188.000000,2820.000000, 0.436901,0.563099, 620 chr1 4597717 4597718 rs147153250 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,GMI, 2 A,G, 132.000000,4876.000000, 0.026358,0.973642, 620 chr1 4597729 4597730 rs114319911 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 620 chr1 4597743 4597744 rs114862683 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop,maf-5-all-pops 620 chr1 4597845 4597846 rs114638688 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, maf-5-some-pop,maf-5-all-pops 620 chr1 4597865 4597866 rs554335 0 - A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 620 chr1 4597935 4597936 rs114918838 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 620 chr1 4597941 4597942 rs16838465 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP, 2 A,G, 2407.000000,2601.000000, 0.480631,0.519369, maf-5-some-pop,maf-5-all-pops 620 chr1 4598000 4598001 rs608492 0 - G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 620 chr1 4598020 4598021 rs12726510 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3324.000000,1684.000000, 0.663738,0.336262, maf-5-some-pop,maf-5-all-pops 620 chr1 4598026 4598027 rs12752601 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3324.000000,1684.000000, 0.663738,0.336262, maf-5-some-pop,maf-5-all-pops 620 chr1 4598089 4598090 rs12737521 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3322.000000,1686.000000, 0.663339,0.336661, maf-5-some-pop,maf-5-all-pops 620 chr1 4598272 4598273 rs11809295 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 404.000000,4604.000000, 0.080671,0.919329, maf-5-some-pop 620 chr1 4598831 4598835 rs375578294 0 + ATTG ATTG -/ATTG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,ATTG, 162.000000,4846.000000, 0.032348,0.967652, 620 chr1 4599035 4599041 rs148236167 0 + AAACTC AAACTC -/AAACTC genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BL,GMI,LUNTER,PJP, 2 -,AAACTC, 1877.000000,3131.000000, 0.374800,0.625200, 620 chr1 4599120 4599121 rs12089240 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4109.000000,899.000000, 0.820487,0.179513, maf-5-some-pop,maf-5-all-pops 620 chr1 4599395 4599396 rs6673713 0 + A A A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,T, 1686.000000,3322.000000, 0.336661,0.663339, maf-5-some-pop,maf-5-all-pops 620 chr1 4599523 4599524 rs10158628 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4349.000000,659.000000, 0.868411,0.131589, maf-5-some-pop,maf-5-all-pops 620 chr1 4599685 4599686 rs12090520 0 + A A A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,HGSV,ILLUMINA-UK,PJP,SC_SNP, 2 A,T, 4516.000000,492.000000, 0.901757,0.098243, 620 chr1 4599696 4599697 rs10158638 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1688.000000,3320.000000, 0.337061,0.662939, maf-5-some-pop,maf-5-all-pops 620 chr1 4599834 4599835 rs28694108 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1688.000000,3320.000000, 0.337061,0.662939, maf-5-some-pop,maf-5-all-pops 620 chr1 4600020 4600021 rs12748214 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 271.000000,4737.000000, 0.054113,0.945887, maf-5-some-pop 620 chr1 4600124 4600125 rs140510938 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4870.000000,138.000000, 0.972444,0.027556, 620 chr1 4600198 4600199 rs74574389 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB, 2 C,G, 4519.000000,489.000000, 0.902356,0.097644, 620 chr1 4600272 4600273 rs114164289 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 620 chr1 4600283 4600284 rs1612095 0 - G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 620 chr1 4600386 4600387 rs114084867 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 138.000000,4870.000000, 0.027556,0.972444, maf-5-some-pop,maf-5-all-pops 620 chr1 4600406 4600407 rs35821364 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,SSMP, 2 C,T, 4030.000000,978.000000, 0.804712,0.195288, maf-5-some-pop,maf-5-all-pops 620 chr1 4600507 4600508 rs61765397 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 C,T, 308.000000,4700.000000, 0.061502,0.938498, maf-5-some-pop,maf-5-all-pops 620 chr1 4600620 4600621 rs542688 0 - C C C/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 620 chr1 4600745 4600746 rs10915556 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 1688.000000,3320.000000, 0.337061,0.662939, maf-5-some-pop,maf-5-all-pops 620 chr1 4600852 4600853 rs80214698 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4710.000000,298.000000, 0.940495,0.059505, maf-5-some-pop 620 chr1 4601134 4601134 rs112465513 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BL,BUSHMAN,GMI,LUNTER, 2 -,A, 2181.000000,2827.000000, 0.435503,0.564497, 620 chr1 4601300 4601301 rs10915557 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1689.000000,3319.000000, 0.337260,0.662740, maf-5-some-pop,maf-5-all-pops 620 chr1 4601321 4601322 rs10915558 0 + G G G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1689.000000,3319.000000, 0.337260,0.662740, maf-5-some-pop,maf-5-all-pops 620 chr1 4601419 4601419 rs111567087 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER,SSMP, 2 -,A, 4613.000000,395.000000, 0.921126,0.078874, 620 chr1 4601723 4601724 rs1988134 0 - A A A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 620 chr1 4602118 4602118 rs5772167 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 12 1000GENOMES,ABI,BGI,BL,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 1686.000000,3322.000000, 0.336661,0.663339, 620 chr1 4602597 4602598 rs12753054 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 888.000000,4120.000000, 0.177316,0.822684, maf-5-some-pop,maf-5-all-pops 620 chr1 4602637 4602638 rs115938702 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 138.000000,4870.000000, 0.027556,0.972444, maf-5-some-pop,maf-5-all-pops 620 chr1 4602783 4602784 rs114577585 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 620 chr1 4602985 4602986 rs74773514 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 421.000000,4587.000000, 0.084065,0.915935, maf-5-some-pop,maf-5-all-pops 620 chr1 4603010 4603011 rs2411775 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1688.000000,3320.000000, 0.337061,0.662939, maf-5-some-pop,maf-5-all-pops 620 chr1 4603126 4603127 rs7534050 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3623.000000,1385.000000, 0.723442,0.276558, maf-5-some-pop 620 chr1 4603289 4603290 rs115460010 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 111.000000,4897.000000, 0.022164,0.977835, maf-5-some-pop,maf-5-all-pops 620 chr1 4603323 4603324 rs694935 0 + T T A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,T, 2479.000000,2529.000000, 0.495008,0.504992, maf-5-some-pop,maf-5-all-pops 620 chr1 4603362 4603363 rs7534277 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop,maf-5-all-pops 620 chr1 4603369 4603370 rs694967 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3339.000000,1669.000000, 0.666733,0.333267, maf-5-some-pop,maf-5-all-pops 620 chr1 4603762 4603763 rs241214 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KWOK,PJP,WI_SSAHASNP, 2 A,C, 2852.000000,2156.000000, 0.569489,0.430511, 620 chr1 4603867 4603868 rs6691031 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1403.000000,3605.000000, 0.280152,0.719848, maf-5-some-pop 620 chr1 4603941 4603942 rs6691058 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 542.000000,4466.000000, 0.108227,0.891773, maf-5-some-pop 620 chr1 4604103 4604104 rs241215 0 + T T A/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1938.000000,3070.000000, 0.386981,0.613019, maf-5-some-pop,maf-5-all-pops 620 chr1 4604168 4604169 rs241216 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 1937.000000,3071.000000, 0.386781,0.613219, maf-5-some-pop,maf-5-all-pops 620 chr1 4604473 4604474 rs12049268 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4437.000000,571.000000, 0.885982,0.114018, maf-5-some-pop,maf-5-all-pops 620 chr1 4604488 4604489 rs241217 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1671.000000,3337.000000, 0.333666,0.666334, 620 chr1 4604656 4604657 rs114626239 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 55.000000,4953.000000, 0.010982,0.989018, 620 chr1 4604808 4604812 rs201725744 0 + ACAG ACAG -/ACAG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,SSMP, 2 -,ACAG, 544.000000,4464.000000, 0.108626,0.891374, 620 chr1 4604842 4604843 rs111203578 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,SSMP, 2 A,C, 4465.000000,543.000000, 0.891573,0.108427, maf-5-some-pop,maf-5-all-pops 620 chr1 4604864 4604868 rs71580271 0 + AGAC AGAC -/AGAC genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,AGAC, 1929.000000,3079.000000, 0.385184,0.614816, 620 chr1 4604927 4604929 rs201120757 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,AG, 401.000000,4607.000000, 0.080072,0.919928, 620 chr1 4605001 4605019 rs149094968 0 + ACAGAGAGAGACAGAGAG ACAGAGAGAGACAGAGAG -/ACAGAGAGAGACAGAGAG genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,EVA-GONL,HUMANGENOME_JCVI, 2 -,ACAGAGAGAGACAGAGAG, 1393.000000,3615.000000, 0.278155,0.721845, 620 chr1 4605133 4605135 rs143587591 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,AG, 52.000000,4956.000000, 0.010383,0.989617, 620 chr1 4605187 4605188 rs72852759 0 + A A A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4345.000000,663.000000, 0.867612,0.132388, maf-5-some-pop,maf-5-all-pops 620 chr1 4605728 4605729 rs34853748 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 A,G, 265.000000,4743.000000, 0.052915,0.947085, maf-5-some-pop 620 chr1 4606032 4606033 rs113944175 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 73.000000,4935.000000, 0.014577,0.985423, 620 chr1 4606114 4606115 rs112721082 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4612.000000,396.000000, 0.920927,0.079074, maf-5-some-pop,maf-5-all-pops 620 chr1 4606186 4606187 rs35744526 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop 620 chr1 4606291 4606292 rs80089004 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop,maf-5-all-pops 620 chr1 4606395 4606396 rs12086928 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 113.000000,4895.000000, 0.022564,0.977436, 620 chr1 4606418 4606419 rs12756562 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,SSAHASNP, 2 G,T, 4743.000000,265.000000, 0.947085,0.052915, maf-5-some-pop 620 chr1 4606470 4606471 rs12092980 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BGI,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4416.000000,592.000000, 0.881789,0.118211, maf-5-some-pop 620 chr1 4606572 4606573 rs7520417 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 410.000000,4598.000000, 0.081869,0.918131, maf-5-some-pop,maf-5-all-pops 620 chr1 4606825 4606826 rs142248305 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 A,T, 4875.000000,133.000000, 0.973442,0.026557, 620 chr1 4606979 4606980 rs371126925 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 -,T, 941.000000,4067.000000, 0.187899,0.812101, 620 chr1 4607907 4607908 rs6678920 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 596.000000,4412.000000, 0.119010,0.880990, maf-5-some-pop,maf-5-all-pops 620 chr1 4607973 4607974 rs113266058 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 G,T, 4913.000000,95.000000, 0.981030,0.018970, 620 chr1 4607981 4607982 rs114892090 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 620 chr1 4608115 4608116 rs6679141 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,BGI,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 4718.000000,290.000000, 0.942093,0.057907, maf-5-some-pop 620 chr1 4608294 4608295 rs12092740 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 620 chr1 4609023 4609024 rs16839257 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 4624.000000,384.000000, 0.923323,0.076677, maf-5-some-pop 620 chr1 4609043 4609044 rs115700124 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, 620 chr1 4609080 4609081 rs61765422 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 C,G, 384.000000,4624.000000, 0.076677,0.923323, maf-5-some-pop,maf-5-all-pops 620 chr1 4609121 4609122 rs16839263 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4211.000000,797.000000, 0.840855,0.159145, maf-5-some-pop 620 chr1 4609272 4609273 rs76948605 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4939.000000,69.000000, 0.986222,0.013778, 620 chr1 4609502 4609503 rs17348860 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 620 chr1 4609664 4609665 rs17348867 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP, 2 A,C, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 620 chr1 4610159 4610160 rs35195942 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 A,C, 263.000000,4745.000000, 0.052516,0.947484, maf-5-some-pop 620 chr1 4610249 4610250 rs241244 0 + A A A/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1699.000000,3309.000000, 0.339257,0.660743, maf-5-some-pop,maf-5-all-pops 620 chr1 4610263 4610263 rs35963445 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,ABI,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 1704.000000,3304.000000, 0.340256,0.659744, 620 chr1 4610395 4610396 rs114307728 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop,maf-5-all-pops 620 chr1 4610632 4610633 rs241245 0 + T T C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3308.000000,1700.000000, 0.660543,0.339457, maf-5-some-pop,maf-5-all-pops 620 chr1 4611059 4611060 rs241246 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3308.000000,1700.000000, 0.660543,0.339457, maf-5-some-pop,maf-5-all-pops 620 chr1 4611077 4611078 rs241247 0 + G G G/T genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 1701.000000,3307.000000, 0.339657,0.660343, maf-5-some-pop,maf-5-all-pops 620 chr1 4611151 4611152 rs7549749 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 409.000000,4599.000000, 0.081669,0.918331, maf-5-some-pop 620 chr1 4611434 4611435 rs7549444 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4362.000000,646.000000, 0.871006,0.128994, maf-5-some-pop,maf-5-all-pops 620 chr1 4611567 4611567 rs562118069 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,EVA-GONL, 2 -,T, 2502.000000,2506.000000, 0.499601,0.500399, 620 chr1 4611763 4611764 rs112375956 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,T, 62.000000,4946.000000, 0.012380,0.987620, maf-5-some-pop,maf-5-all-pops 620 chr1 4612365 4612366 rs241249 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 2747.000000,2261.000000, 0.548522,0.451478, maf-5-some-pop,maf-5-all-pops 620 chr1 4612511 4612512 rs35809881 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop,maf-5-all-pops 620 chr1 4612701 4612704 rs148936674 0 + GGA GGA -/GGA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,GGA, 551.000000,4457.000000, 0.110024,0.889976, 620 chr1 4612713 4612714 rs12735564 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA-UK,PERLEGEN,PJP,SSAHASNP, 2 A,G, 4627.000000,381.000000, 0.923922,0.076078, maf-5-some-pop,maf-5-all-pops 620 chr1 4612839 4612840 rs12728076 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 4616.000000,392.000000, 0.921725,0.078275, maf-5-some-pop,maf-5-all-pops 620 chr1 4613046 4613047 rs75575768 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 59.000000,4949.000000, 0.011781,0.988219, 620 chr1 4613232 4613233 rs241250 0 + C C C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1601.000000,3407.000000, 0.319688,0.680312, maf-5-some-pop,maf-5-all-pops 620 chr1 4613374 4613374 rs5772168 0 + - - -/ATCA genomic insertion unknown 0 0 unknown between 1 8 1000GENOMES,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,TISHKOFF, 2 -,ATCA, 1601.000000,3407.000000, 0.319688,0.680312, 620 chr1 4613437 4613438 rs59943763 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4592.000000,416.000000, 0.916933,0.083067, maf-5-some-pop,maf-5-all-pops 620 chr1 4613760 4613761 rs114663884 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 620 chr1 4614007 4614008 rs241254 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1380.000000,3628.000000, 0.275559,0.724441, maf-5-some-pop,maf-5-all-pops 620 chr1 4614020 4614021 rs241255 0 + G G C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3404.000000,1604.000000, 0.679712,0.320288, maf-5-some-pop,maf-5-all-pops 620 chr1 4614043 4614044 rs72852781 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4456.000000,552.000000, 0.889776,0.110224, maf-5-some-pop 620 chr1 4614396 4614397 rs115932072 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 620 chr1 4614437 4614438 rs12723243 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 392.000000,4616.000000, 0.078275,0.921725, maf-5-some-pop,maf-5-all-pops 620 chr1 4614511 4614512 rs241256 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 3620.000000,1388.000000, 0.722843,0.277157, maf-5-some-pop,maf-5-all-pops 620 chr1 4614615 4614616 rs6426419 0 + T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2025.000000,2983.000000, 0.404353,0.595647, maf-5-some-pop,maf-5-all-pops 620 chr1 4615050 4615051 rs34739466 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop,maf-5-all-pops 620 chr1 4615269 4615270 rs34127421 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop,maf-5-all-pops 620 chr1 4615330 4615331 rs4654556 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1159.000000,3849.000000, 0.231430,0.768570, maf-5-some-pop,maf-5-all-pops 620 chr1 4615508 4615509 rs241258 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1372.000000,3636.000000, 0.273962,0.726038, 620 chr1 4615583 4615584 rs241259 0 + C C C/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1602.000000,3406.000000, 0.319888,0.680112, 620 chr1 4615593 4615594 rs138886779 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, 620 chr1 4615795 4615796 rs112177380 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 620 chr1 4615815 4615816 rs72852787 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3958.000000,1050.000000, 0.790335,0.209665, maf-5-some-pop,maf-5-all-pops 620 chr1 4615933 4615934 rs72852789 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4453.000000,555.000000, 0.889177,0.110823, maf-5-some-pop 620 chr1 4616065 4616066 rs241260 0 + C C C/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1635.000000,3373.000000, 0.326478,0.673522, maf-5-some-pop,maf-5-all-pops 620 chr1 4616101 4616102 rs241261 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3375.000000,1633.000000, 0.673922,0.326078, maf-5-some-pop,maf-5-all-pops 620 chr1 4616798 4616799 rs241262 0 + T T G/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 3510.000000,1498.000000, 0.700879,0.299121, maf-5-some-pop,maf-5-all-pops 620 chr1 4616850 4616851 rs71640935 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4627.000000,381.000000, 0.923922,0.076078, maf-5-some-pop,maf-5-all-pops 620 chr1 4616974 4616975 rs116440559 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, 620 chr1 4617065 4617066 rs375126753 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,C, 115.000000,4893.000000, 0.022963,0.977037, 620 chr1 4617199 4617200 rs115902345 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 620 chr1 4617328 4617329 rs10915559 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, maf-5-some-pop,maf-5-all-pops 620 chr1 4618250 4618251 rs6685798 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1344.000000,3664.000000, 0.268371,0.731629, maf-5-some-pop,maf-5-all-pops 620 chr1 4618721 4618722 rs241263 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3407.000000,1601.000000, 0.680312,0.319688, maf-5-some-pop,maf-5-all-pops 620 chr1 4618795 4618796 rs116075185 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 620 chr1 4619668 4619669 rs59595338 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 598.000000,4410.000000, 0.119409,0.880591, maf-5-some-pop,maf-5-all-pops 620 chr1 4619688 4619689 rs115086282 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,ILLUMINA,SSMP, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop 620 chr1 4620010 4620013 rs143362011 0 + ATA ATA -/ATA genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,ATA, 357.000000,4651.000000, 0.071286,0.928714, 620 chr1 4620289 4620290 rs241266 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1341.000000,3667.000000, 0.267772,0.732228, maf-5-some-pop,maf-5-all-pops 620 chr1 4620324 4620325 rs28687613 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSAHASNP, 2 A,C, 115.000000,4893.000000, 0.022963,0.977037, maf-5-some-pop,maf-5-all-pops 620 chr1 4620601 4620602 rs114867027 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 620 chr1 4620692 4620695 rs146718159 0 + TAT TAT -/TAT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,TAT, 282.000000,4726.000000, 0.056310,0.943690, 620 chr1 4620897 4620898 rs113639796 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,SSMP,TISHKOFF, 2 A,C, 4941.000000,67.000000, 0.986621,0.013379, 620 chr1 4621323 4621324 rs113500797 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 620 chr1 4621463 4621464 rs6698529 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,SSMP, 2 A,G, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop,maf-5-all-pops 620 chr1 4621485 4621486 rs7551122 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 503.000000,4505.000000, 0.100439,0.899561, maf-5-some-pop 620 chr1 4621534 4621535 rs116258868 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 620 chr1 4621674 4621675 rs16839306 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 548.000000,4460.000000, 0.109425,0.890575, maf-5-some-pop 620 chr1 4621694 4621695 rs12562259 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 645.000000,4363.000000, 0.128794,0.871206, maf-5-some-pop,maf-5-all-pops 620 chr1 4622118 4622119 rs115955604 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 65.000000,4943.000000, 0.012979,0.987021, maf-5-some-pop,maf-5-all-pops 620 chr1 4622318 4622319 rs112911346 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 C,T, 4941.000000,67.000000, 0.986621,0.013379, 620 chr1 4622453 4622454 rs146571918 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, 620 chr1 4622498 4622499 rs112789395 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 C,G, 4941.000000,67.000000, 0.986621,0.013379, 620 chr1 4622785 4622786 rs28485386 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSAHASNP, 2 A,G, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 620 chr1 4622866 4622867 rs12738696 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 390.000000,4618.000000, 0.077875,0.922125, maf-5-some-pop,maf-5-all-pops 620 chr1 4622997 4622998 rs138322604 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,LUNTER, 2 -,T, 57.000000,4951.000000, 0.011382,0.988618, 620 chr1 4623422 4623423 rs241269 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3671.000000,1337.000000, 0.733027,0.266973, maf-5-some-pop,maf-5-all-pops 620 chr1 4623738 4623739 rs57100330 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 557.000000,4451.000000, 0.111222,0.888778, maf-5-some-pop 620 chr1 4623888 4623889 rs55956326 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop,maf-5-all-pops 620 chr1 4624175 4624176 rs61765438 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 A,G, 388.000000,4620.000000, 0.077476,0.922524, maf-5-some-pop,maf-5-all-pops 620 chr1 4624179 4624180 rs61765439 0 + G G C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,G, 387.000000,4621.000000, 0.077276,0.922724, maf-5-some-pop,maf-5-all-pops 620 chr1 4624319 4624320 rs60988675 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 C,T, 387.000000,4621.000000, 0.077276,0.922724, maf-5-some-pop,maf-5-all-pops 620 chr1 4624425 4624426 rs59884045 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 643.000000,4365.000000, 0.128395,0.871605, maf-5-some-pop,maf-5-all-pops 620 chr1 4624458 4624459 rs12068469 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,C, 114.000000,4894.000000, 0.022764,0.977236, maf-5-some-pop,maf-5-all-pops 620 chr1 4624459 4624460 rs113187444 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4599.000000,409.000000, 0.918331,0.081669, maf-5-some-pop,maf-5-all-pops 620 chr1 4624510 4624511 rs12737952 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP, 2 C,T, 387.000000,4621.000000, 0.077276,0.922724, maf-5-some-pop,maf-5-all-pops 620 chr1 4624662 4624663 rs6678034 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 G,T, 392.000000,4616.000000, 0.078275,0.921725, 620 chr1 4624664 4624665 rs150713099 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 620 chr1 4624695 4624696 rs112544786 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,SSMP,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 620 chr1 4624778 4624779 rs190250 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3407.000000,1601.000000, 0.680312,0.319688, 620 chr1 4624872 4624873 rs6675145 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM_SSAHASNP,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 A,G, 4621.000000,387.000000, 0.922724,0.077276, maf-5-some-pop,maf-5-all-pops 620 chr1 4625188 4625189 rs241270 0 + T T A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,T, 1834.000000,3174.000000, 0.366214,0.633786, maf-5-some-pop,maf-5-all-pops 620 chr1 4625667 4625668 rs61765441 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 283.000000,4725.000000, 0.056510,0.943490, maf-5-some-pop,maf-5-all-pops 620 chr1 4625695 4625696 rs977271 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TSC-CSHL, 2 C,T, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop 620 chr1 4625918 4625919 rs977272 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TSC-CSHL, 2 C,T, 4620.000000,388.000000, 0.922524,0.077476, maf-5-some-pop,maf-5-all-pops 620 chr1 4626254 4626255 rs241271 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 1712.000000,3296.000000, 0.341853,0.658147, maf-5-some-pop,maf-5-all-pops 620 chr1 4626266 4626267 rs241272 0 + T T G/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2307.000000,2701.000000, 0.460663,0.539337, maf-5-some-pop,maf-5-all-pops 620 chr1 4626285 4626286 rs1515670 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TSC-CSHL, 2 A,G, 4650.000000,358.000000, 0.928514,0.071486, maf-5-some-pop,maf-5-all-pops 620 chr1 4626389 4626390 rs12028120 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 631.000000,4377.000000, 0.125998,0.874002, maf-5-some-pop 620 chr1 4626455 4626456 rs114439191 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4946.000000,62.000000, 0.987620,0.012380, maf-5-some-pop,maf-5-all-pops 620 chr1 4626644 4626645 rs74051585 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 A,C, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 620 chr1 4626794 4626794 rs139576083 0 + - - -/TT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,TT, 4905.000000,103.000000, 0.979433,0.020567, 620 chr1 4627131 4627132 rs12065928 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 4871.000000,137.000000, 0.972644,0.027356, maf-5-some-pop,maf-5-all-pops 620 chr1 4627481 4627482 rs241274 0 + A A A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3293.000000,1715.000000, 0.657548,0.342452, maf-5-some-pop,maf-5-all-pops 620 chr1 4627808 4627809 rs75801037 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4792.000000,216.000000, 0.956869,0.043131, 620 chr1 4627978 4627979 rs241275 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3295.000000,1713.000000, 0.657947,0.342053, maf-5-some-pop,maf-5-all-pops 620 chr1 4628330 4628331 rs28665533 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop,maf-5-all-pops 620 chr1 4628569 4628570 rs10915561 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop,maf-5-all-pops 620 chr1 4628698 4628699 rs241276 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3849.000000,1159.000000, 0.768570,0.231430, maf-5-some-pop 620 chr1 4628851 4628852 rs114460726 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 620 chr1 4629015 4629016 rs72853722 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4445.000000,563.000000, 0.887580,0.112420, maf-5-some-pop,maf-5-all-pops 620 chr1 4629407 4629408 rs241278 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1258.000000,3750.000000, 0.251198,0.748802, maf-5-some-pop 620 chr1 4629528 4629528 rs71580274 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,HUMANGENOME_JCVI, 2 -,T, 4057.000000,951.000000, 0.810104,0.189896, 620 chr1 4629572 4629573 rs116731785 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 620 chr1 4629620 4629621 rs115225824 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 620 chr1 4629777 4629778 rs115858455 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4946.000000,62.000000, 0.987620,0.012380, 620 chr1 4630231 4630232 rs76191495 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 465.000000,4543.000000, 0.092851,0.907149, maf-5-some-pop,maf-5-all-pops 620 chr1 4630378 4630379 rs10915562 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop,maf-5-all-pops 620 chr1 4630383 4630384 rs7531281 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3681.000000,1327.000000, 0.735024,0.264976, maf-5-some-pop 620 chr1 4630482 4630483 rs7526879 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3702.000000,1306.000000, 0.739217,0.260783, maf-5-some-pop 620 chr1 4631084 4631085 rs35827976 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 4730.000000,278.000000, 0.944489,0.055511, maf-5-some-pop,maf-5-all-pops 620 chr1 4631127 4631128 rs6426420 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 620 chr1 4631309 4631310 rs80308628 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 133.000000,4875.000000, 0.026557,0.973442, maf-5-some-pop 620 chr1 4631403 4631404 rs55850443 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,C, 408.000000,4600.000000, 0.081470,0.918530, maf-5-some-pop,maf-5-all-pops 620 chr1 4631765 4631766 rs115019128 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 620 chr1 4631935 4631935 rs150077056 0 + - - -/GAGCAGATA genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GAGCAGATA, 4900.000000,108.000000, 0.978435,0.021566, 620 chr1 4632696 4632697 rs78540452 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4528.000000,480.000000, 0.904153,0.095847, maf-5-some-pop,maf-5-all-pops 620 chr1 4632817 4632818 rs34339970 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1090.000000,3918.000000, 0.217652,0.782348, maf-5-some-pop,maf-5-all-pops 620 chr1 4632969 4632970 rs35748829 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3883.000000,1125.000000, 0.775359,0.224641, maf-5-some-pop,maf-5-all-pops 620 chr1 4632978 4632979 rs35106071 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3896.000000,1112.000000, 0.777955,0.222045, maf-5-some-pop,maf-5-all-pops 620 chr1 4633237 4633238 rs7534062 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4542.000000,466.000000, 0.906949,0.093051, maf-5-some-pop,maf-5-all-pops 620 chr1 4633403 4633404 rs12075731 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4244.000000,764.000000, 0.847444,0.152556, maf-5-some-pop 620 chr1 4633553 4633554 rs6673089 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 2758.000000,2250.000000, 0.550719,0.449281, maf-5-some-pop 620 chr1 4633638 4633639 rs6426421 0 + C C C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1131.000000,3877.000000, 0.225839,0.774161, maf-5-some-pop 620 chr1 4633684 4633685 rs7527742 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1116.000000,3892.000000, 0.222843,0.777157, maf-5-some-pop 620 chr1 4633921 4633922 rs17344823 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 3894.000000,1114.000000, 0.777556,0.222444, maf-5-some-pop 620 chr1 4633951 4633970 rs139228401 0 + CCTCCTGGACAGCCAGGTC CCTCCTGGACAGCCAGGTC -/CCTCCTGGACAGCCAGGTC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BILGI_BIOE,GMI,LUNTER, 2 -,CCTCCTGGACAGCCAGGTC, 3431.000000,1577.000000, 0.685104,0.314896, 620 chr1 4634102 4634103 rs113195985 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4588.000000,420.000000, 0.916134,0.083866, maf-5-some-pop,maf-5-all-pops 620 chr1 4634378 4634379 rs115342135 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 54.000000,4954.000000, 0.010783,0.989217, 620 chr1 4635248 4635249 rs2411777 0 + C C C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3894.000000,1114.000000, 0.777556,0.222444, maf-5-some-pop 620 chr1 4635555 4635555 rs34971058 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,BGI,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 433.000000,4575.000000, 0.086462,0.913538, 620 chr1 4635965 4635965 rs113393146 0 + - - -/TA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BUSHMAN,EVA-GONL,LUNTER, 2 -,TA, 4283.000000,725.000000, 0.855232,0.144768, 620 chr1 4636176 4636177 rs111801376 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 C,T, 4594.000000,414.000000, 0.917332,0.082668, 620 chr1 4636193 4636194 rs10799246 0 + T T A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1599.000000,3409.000000, 0.319289,0.680711, 620 chr1 4636262 4636263 rs111645631 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 422.000000,4586.000000, 0.084265,0.915735, 620 chr1 4636904 4636904 rs528936841 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 4598.000000,410.000000, 0.918131,0.081869, 620 chr1 4637392 4637393 rs12746043 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3896.000000,1112.000000, 0.777955,0.222045, maf-5-some-pop,maf-5-all-pops 620 chr1 4637473 4637474 rs12073968 0 + A A A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 3882.000000,1126.000000, 0.775160,0.224840, maf-5-some-pop,maf-5-all-pops 620 chr1 4637713 4637714 rs12068064 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3843.000000,1165.000000, 0.767372,0.232628, 620 chr1 4638060 4638061 rs12724503 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1121.000000,3887.000000, 0.223842,0.776158, maf-5-some-pop,maf-5-all-pops 620 chr1 4638236 4638237 rs4654561 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3920.000000,1088.000000, 0.782748,0.217252, 620 chr1 4638320 4638321 rs4654562 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1559.000000,3449.000000, 0.311302,0.688698, maf-5-some-pop,maf-5-all-pops 620 chr1 4638742 4638743 rs4654563 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1635.000000,3373.000000, 0.326478,0.673522, maf-5-some-pop,maf-5-all-pops 620 chr1 4639112 4639113 rs7543382 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1606.000000,3402.000000, 0.320687,0.679313, 620 chr1 4639169 4639170 rs7540656 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3374.000000,1634.000000, 0.673722,0.326278, maf-5-some-pop,maf-5-all-pops 620 chr1 4640552 4640553 rs113427174 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 400.000000,4608.000000, 0.079872,0.920128, 620 chr1 4640814 4640815 rs1963269 0 - C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 620 chr1 4641171 4641171 rs139635115 0 + - - -/TTTC genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,TTTC, 4613.000000,395.000000, 0.921126,0.078874, 620 chr1 4641271 4641272 rs146339183 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4491.000000,517.000000, 0.896765,0.103235, 620 chr1 4641632 4641632 rs5772170 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 11 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 1026.000000,3982.000000, 0.204872,0.795128, 620 chr1 4642125 4642126 rs61765446 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 424.000000,4584.000000, 0.084665,0.915335, maf-5-some-pop 620 chr1 4642265 4642266 rs114617657 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 620 chr1 4642514 4642515 rs12036574 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4823.000000,185.000000, 0.963059,0.036941, 620 chr1 4642782 4642783 rs76678106 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB, 2 C,T, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop,maf-5-all-pops 620 chr1 4643481 4643482 rs12135678 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 836.000000,4172.000000, 0.166933,0.833067, maf-5-some-pop,maf-5-all-pops 620 chr1 4643668 4643669 rs4542190 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_JCM, 2 C,G, 96.000000,4912.000000, 0.019169,0.980831, maf-5-some-pop,maf-5-all-pops 620 chr1 4643687 4643688 rs515279 0 - T T A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 22 1000GENOMES,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 728.000000,4280.000000,4280.000000,728.000000, 0.072684,0.427316,0.427316,0.072684, maf-5-some-pop 620 chr1 4643856 4643857 rs587108 0 + T T G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP, 2 G,T, 4325.000000,683.000000, 0.863618,0.136382, maf-5-some-pop 620 chr1 4644016 4644017 rs2411778 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF,TSC-CSHL, 2 A,G, 508.000000,4500.000000, 0.101438,0.898562, maf-5-some-pop,maf-5-all-pops 620 chr1 4644084 4644085 rs588347 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2300.000000,2708.000000, 0.459265,0.540735, maf-5-some-pop,maf-5-all-pops 620 chr1 4644206 4644207 rs588861 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL, 2 A,G, 4324.000000,684.000000, 0.863419,0.136581, maf-5-some-pop 620 chr1 4644312 4644313 rs488684 0 - T T A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 620 chr1 4644473 4644475 rs3059964 0 + CT CT -/CT genomic deletion unknown 0 0 unknown range 1 8 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,LUNTER,PJP,SSMP, 2 -,CT, 4314.000000,694.000000, 0.861422,0.138578, 620 chr1 4645437 4645438 rs76402772 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1042.000000,3966.000000, 0.208067,0.791933, maf-5-some-pop,maf-5-all-pops 620 chr1 4645703 4645704 rs616180 0 + T T G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4171.000000,837.000000, 0.832867,0.167133, maf-5-some-pop 620 chr1 4645724 4645725 rs7517269 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,G, 4564.000000,444.000000, 0.911342,0.088658, maf-5-some-pop,maf-5-all-pops 620 chr1 4645877 4645878 rs617046 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4173.000000,835.000000, 0.833267,0.166733, maf-5-some-pop 620 chr1 4645927 4645928 rs57374319 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4134.000000,874.000000, 0.825479,0.174521, maf-5-some-pop,maf-5-all-pops 620 chr1 4645946 4645947 rs563158 0 - G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 620 chr1 4646054 4646055 rs617610 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 841.000000,4167.000000, 0.167931,0.832069, maf-5-some-pop 620 chr1 4646378 4646379 rs619364 0 + G G A/G genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop,maf-5-all-pops 620 chr1 4646571 4646572 rs4654446 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2945.000000,2063.000000, 0.588059,0.411941, maf-5-some-pop,maf-5-all-pops 620 chr1 4646605 4646606 rs116063488 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4903.000000,105.000000, 0.979034,0.020967, maf-5-some-pop,maf-5-all-pops 620 chr1 4646957 4646957 rs140710067 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,T, 4922.000000,86.000000, 0.982827,0.017173, 620 chr1 4647157 4647158 rs559200 0 - G G C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, 620 chr1 4647167 4647168 rs34146010 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,GMI,HGSV,LUNTER,SSMP,TISHKOFF, 2 -,C, 4178.000000,830.000000, 0.834265,0.165735, 620 chr1 4647174 4647175 rs6691728 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,TISHKOFF, 2 C,T, 830.000000,4178.000000, 0.165735,0.834265, maf-5-some-pop 620 chr1 4647208 4647209 rs558411 0 - G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 620 chr1 4647283 4647285 rs146822206 0 + AC AC -/AC genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,AC, 105.000000,4903.000000, 0.020967,0.979034, 620 chr1 4647446 4647447 rs634075 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 833.000000,4175.000000, 0.166334,0.833666, maf-5-some-pop 620 chr1 4647645 4647646 rs2674014 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 834.000000,4174.000000, 0.166534,0.833466, maf-5-some-pop 620 chr1 4648097 4648098 rs61767665 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 442.000000,4566.000000, 0.088259,0.911741, 620 chr1 4648173 4648174 rs669252 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 844.000000,4164.000000, 0.168530,0.831470, maf-5-some-pop 620 chr1 4648247 4648248 rs115352413 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 620 chr1 4648580 4648581 rs681460 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop,maf-5-all-pops 620 chr1 4648779 4648780 rs10915566 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3989.000000,1019.000000, 0.796526,0.203474, maf-5-some-pop,maf-5-all-pops 620 chr1 4648785 4648786 rs550028 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4433.000000,575.000000, 0.885184,0.114816, maf-5-some-pop,maf-5-all-pops 620 chr1 4648824 4648825 rs2176113 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3968.000000,1040.000000, 0.792332,0.207668, maf-5-some-pop,maf-5-all-pops 620 chr1 4649040 4649041 rs683704 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4174.000000,834.000000, 0.833466,0.166534, maf-5-some-pop 620 chr1 4649156 4649157 rs546397 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4433.000000,575.000000, 0.885184,0.114816, maf-5-some-pop,maf-5-all-pops 620 chr1 4649178 4649179 rs1515671 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TSC-CSHL, 2 C,T, 4566.000000,442.000000, 0.911741,0.088259, maf-5-some-pop 620 chr1 4649315 4649316 rs1849943 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, 2 A,G, 442.000000,4566.000000, 0.088259,0.911741, maf-5-some-pop 620 chr1 4649448 4649449 rs35065490 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 444.000000,4564.000000, 0.088658,0.911342, 620 chr1 4649491 4649492 rs72853775 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop 620 chr1 4650523 4650524 rs2411781 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TSC-CSHL, 2 C,T, 4568.000000,440.000000, 0.912141,0.087859, maf-5-some-pop 620 chr1 4650610 4650611 rs115582132 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4882.000000,126.000000, 0.974840,0.025160, maf-5-some-pop,maf-5-all-pops 620 chr1 4650640 4650641 rs10915567 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3971.000000,1037.000000, 0.792931,0.207069, maf-5-some-pop,maf-5-all-pops 620 chr1 4650688 4650689 rs2411782 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SC_JCM,SSMP,TSC-CSHL, 2 C,G, 4568.000000,440.000000, 0.912141,0.087859, maf-5-some-pop,maf-5-all-pops 620 chr1 4651203 4651204 rs12079284 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1019.000000,3989.000000, 0.203474,0.796526, maf-5-some-pop,maf-5-all-pops 620 chr1 4651229 4651230 rs164774 0 - A A A/C/G/T genomic single unknown 0 0 unknown exact 1 SingleClassQuadAllelic 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 4 A,C,G,T, 720.000000,4288.000000,4288.000000,720.000000, 0.071885,0.428115,0.428115,0.071885, maf-5-some-pop 620 chr1 4651399 4651399 rs3059991 0 + - - -/TG genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,TISHKOFF, 2 -,TG, 674.000000,4334.000000, 0.134585,0.865415, 620 chr1 4651744 4651745 rs12037529 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, 620 chr1 4652004 4652005 rs10489134 0 - G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 620 chr1 4652723 4652724 rs114124674 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 620 chr1 4652922 4652923 rs61767666 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4568.000000,440.000000, 0.912141,0.087859, maf-5-some-pop,maf-5-all-pops 620 chr1 4653026 4653027 rs7554766 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,WI_SSAHASNP, 2 A,G, 402.000000,4606.000000, 0.080272,0.919728, 620 chr1 4653027 4653027 rs139584474 0 + - - -/TC genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,TC, 3939.000000,1069.000000, 0.786542,0.213458, 620 chr1 4653092 4653093 rs7518655 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 C,T, 4606.000000,402.000000, 0.919728,0.080272, maf-5-some-pop 620 chr1 4653263 4653264 rs7518781 0 + C C A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 459.000000,4549.000000, 0.091653,0.908347, maf-5-some-pop 620 chr1 4653415 4653416 rs116412110 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 620 chr1 4653660 4653661 rs115926959 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 620 chr1 4654223 4654224 rs61767667 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 406.000000,4602.000000, 0.081070,0.918930, maf-5-some-pop 620 chr1 4654328 4654329 rs61767668 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 421.000000,4587.000000, 0.084065,0.915935, maf-5-some-pop 620 chr1 4655607 4655608 rs77556244 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4861.000000,147.000000, 0.970647,0.029353, 620 chr1 4655972 4655973 rs540572 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,C, 1014.000000,3994.000000, 0.202476,0.797524, maf-5-some-pop 620 chr1 4656146 4656147 rs6426423 0 + C C A/C genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 2758.000000,2250.000000, 0.550719,0.449281, maf-5-some-pop,maf-5-all-pops 620 chr1 4656860 4656861 rs10799248 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1014.000000,3994.000000, 0.202476,0.797524, maf-5-some-pop,maf-5-all-pops 620 chr1 4657086 4657087 rs4654566 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,G, 468.000000,4540.000000, 0.093451,0.906550, maf-5-some-pop,maf-5-all-pops 620 chr1 4657121 4657122 rs516947 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4258.000000,750.000000, 0.850240,0.149760, maf-5-some-pop,maf-5-all-pops 620 chr1 4657130 4657131 rs114186336 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 620 chr1 4657131 4657132 rs516977 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 750.000000,4258.000000, 0.149760,0.850240, maf-5-some-pop,maf-5-all-pops 620 chr1 4657169 4657170 rs517092 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 750.000000,4258.000000, 0.149760,0.850240, maf-5-some-pop 620 chr1 4657294 4657295 rs651695 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3923.000000,1085.000000, 0.783347,0.216653, maf-5-some-pop,maf-5-all-pops 620 chr1 4657833 4657834 rs653988 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 750.000000,4258.000000, 0.149760,0.850240, 620 chr1 4658184 4658185 rs12139443 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 126.000000,4882.000000, 0.025160,0.974840, 620 chr1 4658335 4658336 rs149057461 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,BILGI_BIOE,SSMP, 2 -,T, 1270.000000,3738.000000, 0.253594,0.746406, 620 chr1 4658338 4658339 rs12726702 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,SSAHASNP, 2 A,T, 2952.000000,2056.000000, 0.589457,0.410543, 620 chr1 4658345 4658346 rs549087 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BL,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,SC_JCM,SSAHASNP, 2 A,T, 4259.000000,749.000000, 0.850439,0.149561, 620 chr1 4658349 4658350 rs145592668 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BL,GMI, 2 A,T, 901.000000,4107.000000, 0.179912,0.820088, 620 chr1 4658353 4658354 rs59930628 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,HGSV, 2 A,T, 2639.000000,2369.000000, 0.526957,0.473043, 620 chr1 4658389 4658390 rs666799 0 + A A A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 750.000000,4258.000000, 0.149760,0.850240, maf-5-some-pop,maf-5-all-pops 620 chr1 4658765 4658766 rs150496691 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 5 1000GENOMES,BL,EVA-GONL,LUNTER,SSMP, 2 -,G, 466.000000,4542.000000, 0.093051,0.906949, 620 chr1 4658815 4658816 rs553691 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 717.000000,4291.000000, 0.143171,0.856829, maf-5-some-pop,maf-5-all-pops 620 chr1 4659247 4659248 rs7528368 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1616.000000,3392.000000, 0.322684,0.677316, 620 chr1 4659325 4659326 rs12039346 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, 620 chr1 4659327 4659328 rs7521243 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 4507.000000,501.000000, 0.899960,0.100040, 620 chr1 4659367 4659368 rs12040050 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 149.000000,4859.000000, 0.029752,0.970248, 620 chr1 4659371 4659372 rs12044108 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,SSMP, 2 A,G, 4859.000000,149.000000, 0.970248,0.029752, 620 chr1 4659670 4659671 rs12042835 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4858.000000,150.000000, 0.970048,0.029952, maf-5-some-pop 620 chr1 4659902 4659903 rs116152849 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 168.000000,4840.000000, 0.033546,0.966454, 620 chr1 4659914 4659915 rs200514641 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 -,G, 168.000000,4840.000000, 0.033546,0.966454, 620 chr1 4660447 4660448 rs59392654 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,SSMP, 2 A,G, 4771.000000,237.000000, 0.952676,0.047324, maf-5-some-pop,maf-5-all-pops 620 chr1 4661143 4661144 rs602244 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1021.000000,3987.000000, 0.203874,0.796126, maf-5-some-pop 620 chr1 4661638 4661639 rs604465 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 A,G, 1021.000000,3987.000000, 0.203874,0.796126, maf-5-some-pop,maf-5-all-pops 620 chr1 4661935 4661936 rs151245727 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,JMKIDD_LAB, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 620 chr1 4662295 4662296 rs559624 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 588.000000,4420.000000, 0.117412,0.882588, maf-5-some-pop 620 chr1 4663684 4663685 rs61764962 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 485.000000,4523.000000, 0.096845,0.903155, maf-5-some-pop,maf-5-all-pops 620 chr1 4663849 4663850 rs12049179 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 152.000000,4856.000000, 0.030351,0.969649, maf-5-some-pop,maf-5-all-pops 620 chr1 4664848 4664849 rs114986859 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 620 chr1 4665196 4665197 rs12047988 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,SSMP, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 620 chr1 4666038 4666039 rs2411885 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4301.000000,707.000000, 0.858826,0.141174, maf-5-some-pop,maf-5-all-pops 620 chr1 4666043 4666044 rs10915569 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,SC_SNP,SSMP,TISHKOFF, 2 A,C, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop,maf-5-all-pops 620 chr1 4666493 4666494 rs164780 0 - C C C/G genomic single unknown 0 0 unknown exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 620 chr1 4666818 4666819 rs151716 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3739.000000,1269.000000, 0.746605,0.253395, maf-5-some-pop,maf-5-all-pops 620 chr1 4667377 4667378 rs4654450 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1739.000000,3269.000000, 0.347244,0.652756, 620 chr1 4668093 4668094 rs151715 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SSMP,TISHKOFF, 2 A,G, 3739.000000,1269.000000, 0.746605,0.253395, maf-5-some-pop,maf-5-all-pops 620 chr1 4668818 4668819 rs556211767 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 1 1000GENOMES, 2 -,A, 2783.000000,2225.000000, 0.555711,0.444289, 620 chr1 4669623 4669624 rs56412733 0 + G G C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 141.000000,4867.000000, 0.028155,0.971845, maf-5-some-pop 620 chr1 4670486 4670487 rs78876700 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 620 chr1 4671410 4671411 rs164779 0 - C C C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 620 chr1 4671786 4671787 rs75477852 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, maf-5-some-pop,maf-5-all-pops 620 chr1 4672079 4672080 rs143370513 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 G,T, 4936.000000,72.000000, 0.985623,0.014377, 620 chr1 4672941 4672943 rs113859942 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BUSHMAN,LUNTER,SSMP, 2 -,CA, 149.000000,4859.000000, 0.029752,0.970248, 620 chr1 4673170 4673171 rs78709476 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4864.000000,144.000000, 0.971246,0.028754, 620 chr1 4673793 4673794 rs114548240 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 620 chr1 4673886 4673887 rs116572401 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4939.000000,69.000000, 0.986222,0.013778, maf-5-some-pop,maf-5-all-pops 620 chr1 4674194 4674195 rs116097315 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 620 chr1 4674243 4674244 rs12569149 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,SSMP, 2 A,G, 195.000000,4813.000000, 0.038938,0.961062, maf-5-some-pop,maf-5-all-pops 620 chr1 4674428 4674429 rs10915571 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,PJP,SC_SNP,TISHKOFF, 2 C,T, 3762.000000,1246.000000, 0.751198,0.248802, maf-5-some-pop 620 chr1 4674647 4674647 rs113638484 0 + - - -/TCCTCTAATGC genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,LUNTER, 2 -,TCCTCTAATGC, 2904.000000,2104.000000, 0.579872,0.420128, 620 chr1 4674791 4674792 rs61764963 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL, 2 A,T, 63.000000,4945.000000, 0.012580,0.987420, 620 chr1 4675291 4675292 rs115539632 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 620 chr1 4675554 4675555 rs4654569 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 768.000000,4240.000000, 0.153355,0.846645, maf-5-some-pop 620 chr1 4675715 4675716 rs4654570 0 + G G G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4190.000000,818.000000, 0.836661,0.163339, maf-5-some-pop,maf-5-all-pops 620 chr1 4675840 4675841 rs12401686 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4685.000000,323.000000, 0.935503,0.064497, maf-5-some-pop 620 chr1 4675944 4675945 rs7549132 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,WI_SSAHASNP, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 620 chr1 4676036 4676037 rs113611712 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 620 chr1 4676038 4676039 rs114054739 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 620 chr1 4676209 4676210 rs76043610 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 620 chr1 4676305 4676306 rs116481472 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, maf-5-some-pop,maf-5-all-pops 620 chr1 4676540 4676541 rs12401608 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop,maf-5-all-pops 620 chr1 4676677 4676678 rs117344883 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 620 chr1 4676845 4676846 rs1564670 0 + A A A/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 3969.000000,1039.000000, 0.792532,0.207468, maf-5-some-pop,maf-5-all-pops 620 chr1 4676936 4676937 rs2411886 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2140.000000,2868.000000, 0.427316,0.572684, maf-5-some-pop,maf-5-all-pops 620 chr1 4677086 4677087 rs2411887 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2942.000000,2066.000000, 0.587460,0.412540, maf-5-some-pop,maf-5-all-pops 620 chr1 4677159 4677160 rs6691550 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop 620 chr1 4677184 4677185 rs1564671 0 + A A A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 3667.000000,1341.000000, 0.732228,0.267772, maf-5-some-pop,maf-5-all-pops 620 chr1 4677275 4677276 rs1564672 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 989.000000,4019.000000, 0.197484,0.802516, maf-5-some-pop,maf-5-all-pops 620 chr1 4677331 4677332 rs6426425 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCM_SSAHASNP,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,SSMP,WI_SSAHASNP, 2 A,G, 4022.000000,986.000000, 0.803115,0.196885, maf-5-some-pop,maf-5-all-pops 620 chr1 4677374 4677375 rs6426426 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4019.000000,989.000000, 0.802516,0.197484, maf-5-some-pop,maf-5-all-pops 620 chr1 4677534 4677535 rs4403602 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2934.000000,2074.000000, 0.585863,0.414137, maf-5-some-pop,maf-5-all-pops 620 chr1 4677718 4677734 rs551355987 0 + CCTGGGAGGCTGAGCC CCTGGGAGGCTGAGCC -/CCTGGGAGGCTGAGCC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,CCTGGGAGGCTGAGCC, 160.000000,4848.000000, 0.031949,0.968051, 620 chr1 4677728 4677729 rs7554628 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSMP,WI_SSAHASNP, 2 C,T, 2453.000000,2555.000000, 0.489816,0.510184, maf-5-some-pop,maf-5-all-pops 620 chr1 4677814 4677815 rs115551388 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 C,G, 4803.000000,205.000000, 0.959065,0.040934, 620 chr1 4677834 4677834 rs33988719 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,BGI,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,TISHKOFF, 2 -,G, 0.000000,5008.000000, 0.000000,1.000000, 620 chr1 4677957 4677958 rs7554826 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop 620 chr1 4677976 4677977 rs7554907 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1023.000000,3985.000000, 0.204273,0.795727, maf-5-some-pop,maf-5-all-pops 620 chr1 4677979 4677980 rs7538835 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 317.000000,4691.000000, 0.063299,0.936701, maf-5-some-pop,maf-5-all-pops 620 chr1 4677988 4677989 rs7552057 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF,WI_SSAHASNP, 2 A,G, 4691.000000,317.000000, 0.936701,0.063299, maf-5-some-pop,maf-5-all-pops 620 chr1 4678029 4678030 rs7552067 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 4680.000000,328.000000, 0.934505,0.065495, maf-5-some-pop 620 chr1 4678122 4678123 rs7555011 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3192.000000,1816.000000, 0.637380,0.362620, maf-5-some-pop,maf-5-all-pops 620 chr1 4678199 4678200 rs114734465 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 76.000000,4932.000000, 0.015176,0.984824, 620 chr1 4678336 4678337 rs78093327 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ENSEMBL,EVA-GONL,GMI, 2 A,G, 863.000000,4145.000000, 0.172324,0.827676, 620 chr1 4678370 4678371 rs35259920 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ABI,GMI, 2 A,T, 2315.000000,2693.000000, 0.462260,0.537740, 620 chr1 4678540 4678540 rs35876197 0 + - - -/TATT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,ABI,LUNTER, 2 -,TATT, 2721.000000,2287.000000, 0.543331,0.456669, 620 chr1 4678570 4678575 rs151239028 0 + ATATT ATATT -/ATATT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,LUNTER, 2 -,ATATT, 748.000000,4260.000000, 0.149361,0.850639, 620 chr1 4678647 4678648 rs12024441 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP, 2 A,G, 4115.000000,893.000000, 0.821685,0.178315, maf-5-some-pop,maf-5-all-pops 620 chr1 4678661 4678662 rs12048467 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 893.000000,4115.000000, 0.178315,0.821685, maf-5-some-pop,maf-5-all-pops 620 chr1 4678729 4678730 rs12061662 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 A,G, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 620 chr1 4678765 4678766 rs6688492 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 895.000000,4113.000000, 0.178714,0.821286, maf-5-some-pop,maf-5-all-pops 620 chr1 4678828 4678829 rs6698054 0 + C C C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,G, 4111.000000,897.000000, 0.820887,0.179113, maf-5-some-pop,maf-5-all-pops 620 chr1 4678967 4678968 rs7364448 0 + T T G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 G,T, 473.000000,4535.000000, 0.094449,0.905551, 620 chr1 4678973 4678974 rs6698230 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM_SSAHASNP,EVA-GONL,SSMP, 2 C,T, 4693.000000,315.000000, 0.937101,0.062899, 620 chr1 4679107 4679107 rs148551853 0 + - - -/TTAT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,TTAT, 1339.000000,3669.000000, 0.267372,0.732628, 620 chr1 4679160 4679161 rs6426427 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 G,T, 888.000000,4120.000000, 0.177316,0.822684, maf-5-some-pop,maf-5-all-pops 620 chr1 4679179 4679180 rs6426428 0 + C C A/C genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 A,C, 891.000000,4117.000000, 0.177915,0.822085, maf-5-some-pop,maf-5-all-pops 620 chr1 4679352 4679352 rs71580275 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,HUMANGENOME_JCVI, 2 -,T, 2789.000000,2219.000000, 0.556909,0.443091, 620 chr1 4679459 4679460 rs4654572 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 892.000000,4116.000000, 0.178115,0.821885, maf-5-some-pop,maf-5-all-pops 620 chr1 4679468 4679469 rs4654573 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 891.000000,4117.000000, 0.177915,0.822085, maf-5-some-pop,maf-5-all-pops 620 chr1 4679510 4679511 rs61248459 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, 620 chr1 4679516 4679518 rs142505598 0 + TC TC -/TC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,PJP, 2 -,TC, 3518.000000,1490.000000, 0.702476,0.297524, 620 chr1 4679548 4679549 rs61267178 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,HGSV,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4943.000000,65.000000, 0.987021,0.012979, 620 chr1 4679562 4679563 rs12145928 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 580.000000,4428.000000, 0.115815,0.884185, maf-5-some-pop 620 chr1 4679730 4679731 rs4654574 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 890.000000,4118.000000, 0.177716,0.822284, maf-5-some-pop,maf-5-all-pops 620 chr1 4679977 4679978 rs57717124 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,SSMP, 2 C,T, 4870.000000,138.000000, 0.972444,0.027556, maf-5-some-pop,maf-5-all-pops 620 chr1 4680562 4680563 rs7518910 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1193.000000,3815.000000, 0.238219,0.761781, 620 chr1 4680698 4680699 rs56945522 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 2261.000000,2747.000000, 0.451478,0.548522, maf-5-some-pop,maf-5-all-pops 620 chr1 4680772 4680773 rs566129984 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4952.000000,56.000000, 0.988818,0.011182, 620 chr1 4680882 4680883 rs12750191 0 + A A A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4417.000000,591.000000, 0.881989,0.118011, maf-5-some-pop 620 chr1 4681136 4681137 rs112123078 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,SSMP, 2 G,T, 4667.000000,341.000000, 0.931909,0.068091, 620 chr1 4681245 4681246 rs149555412 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4688.000000,320.000000, 0.936102,0.063898, 620 chr1 4681433 4681434 rs79072259 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 C,G, 4943.000000,65.000000, 0.987021,0.012979, 620 chr1 4681564 4681565 rs6664341 0 + A A A/C genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 3801.000000,1207.000000, 0.758986,0.241014, 620 chr1 4681900 4681901 rs145910653 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,T, 315.000000,4693.000000, 0.062899,0.937101, 620 chr1 4682103 4682104 rs6668002 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3467.000000,1541.000000, 0.692292,0.307708, maf-5-some-pop,maf-5-all-pops,microattr-tpa 620 chr1 4682132 4682133 rs6668016 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM_SSAHASNP,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop 620 chr1 4682229 4682230 rs12026258 0 + C C A/C genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 591.000000,4417.000000, 0.118011,0.881989, maf-5-some-pop 620 chr1 4682230 4682231 rs75673128 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 106.000000,4902.000000, 0.021166,0.978834, maf-5-some-pop,maf-5-all-pops 620 chr1 4682272 4682273 rs6668199 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 1207.000000,3801.000000, 0.241014,0.758986, maf-5-some-pop,maf-5-all-pops 620 chr1 4682514 4682515 rs11802858 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 C,T, 258.000000,4750.000000, 0.051518,0.948482, maf-5-some-pop 620 chr1 4682531 4682532 rs12403290 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 A,C, 316.000000,4692.000000, 0.063099,0.936901, maf-5-some-pop 620 chr1 4682564 4682565 rs12024214 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 580.000000,4428.000000, 0.115815,0.884185, maf-5-some-pop 620 chr1 4682721 4682722 rs12029434 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 564.000000,4444.000000, 0.112620,0.887380, maf-5-some-pop 620 chr1 4682802 4682803 rs115716234 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4636.000000,372.000000, 0.925719,0.074281, maf-5-some-pop 620 chr1 4682814 4682815 rs12028575 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4416.000000,592.000000, 0.881789,0.118211, maf-5-some-pop 620 chr1 4682835 4682836 rs111773891 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 85.000000,4923.000000, 0.016973,0.983027, maf-5-some-pop,maf-5-all-pops 620 chr1 4683047 4683048 rs12029526 0 + T T G/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 914.000000,4094.000000, 0.182508,0.817492, maf-5-some-pop 620 chr1 4683049 4683050 rs12065663 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SC_SNP, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, 620 chr1 4683251 4683252 rs72856079 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 620 chr1 4683293 4683295 rs35427335 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 8 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,CA, 571.000000,4437.000000, 0.114018,0.885982, 620 chr1 4683411 4683412 rs12062698 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,COMPLETE_GENOMICS,SC_SNP, 2 A,G, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop,maf-5-all-pops 620 chr1 4683547 4683548 rs61764967 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 916.000000,4092.000000, 0.182907,0.817093, maf-5-some-pop,maf-5-all-pops 620 chr1 4683812 4683813 rs75221704 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4898.000000,110.000000, 0.978035,0.021965, 620 chr1 4683847 4683848 rs79426409 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4121.000000,887.000000, 0.822883,0.177117, maf-5-some-pop 620 chr1 4684089 4684090 rs12029673 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3843.000000,1165.000000, 0.767372,0.232628, maf-5-some-pop,maf-5-all-pops 620 chr1 4684248 4684249 rs6657421 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2333.000000,2675.000000, 0.465855,0.534145, maf-5-some-pop,maf-5-all-pops 620 chr1 4684304 4684305 rs6674936 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 2428.000000,2580.000000, 0.484824,0.515176, maf-5-some-pop,maf-5-all-pops 620 chr1 4684606 4684607 rs75860447 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop,maf-5-all-pops 620 chr1 4684727 4684728 rs118136986 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, 620 chr1 4684845 4684846 rs1107468 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4730.000000,278.000000, 0.944489,0.055511, maf-5-some-pop 620 chr1 4685471 4685472 rs1483199 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2581.000000,2427.000000, 0.515375,0.484625, maf-5-some-pop 620 chr1 4685765 4685766 rs2411890 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,GMI,TSC-CSHL, 2 G,T, 3322.000000,1686.000000, 0.663339,0.336661, 620 chr1 4685870 4685871 rs875806 0 - G G C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 620 chr1 4686157 4686158 rs114153410 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop 620 chr1 4686194 4686195 rs112763214 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 620 chr1 4686210 4686211 rs11580863 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 3836.000000,1172.000000, 0.765974,0.234026, maf-5-some-pop 620 chr1 4686397 4686398 rs34899280 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BL,EVA-GONL,GMI,HGSV,LUNTER,SSMP, 2 -,T, 1168.000000,3840.000000, 0.233227,0.766773, 620 chr1 4686633 4686634 rs11576907 0 + G G C/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 1168.000000,3840.000000, 0.233227,0.766773, maf-5-some-pop 620 chr1 4686640 4686641 rs56028718 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 734.000000,4274.000000, 0.146565,0.853435, maf-5-some-pop,maf-5-all-pops 620 chr1 4686698 4686699 rs112387247 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 620 chr1 4687209 4687210 rs115785205 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 620 chr1 4687309 4687310 rs111301587 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,T, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 620 chr1 4687813 4687814 rs4654576 0 + A A A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 476.000000,4532.000000, 0.095048,0.904952, maf-5-some-pop 620 chr1 4687873 4687874 rs7553610 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1680.000000,3328.000000, 0.335463,0.664537, maf-5-some-pop,maf-5-all-pops 620 chr1 4688032 4688033 rs6662425 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 2772.000000,2236.000000, 0.553514,0.446486, maf-5-some-pop,maf-5-all-pops 620 chr1 4688089 4688090 rs116104662 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4722.000000,286.000000, 0.942891,0.057109, maf-5-some-pop 620 chr1 4688160 4688161 rs6426430 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 359.000000,4649.000000, 0.071685,0.928315, maf-5-some-pop 620 chr1 4688657 4688658 rs116034210 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop 620 chr1 4688914 4688915 rs143904138 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 620 chr1 4688915 4688916 rs117891489 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 620 chr1 4688936 4688937 rs74051905 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 G,T, 4943.000000,65.000000, 0.987021,0.012979, 620 chr1 4689760 4689761 rs116320175 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4897.000000,111.000000, 0.977835,0.022164, maf-5-some-pop,maf-5-all-pops 620 chr1 4690099 4690099 rs147209091 0 + - - -/GGCCT genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,GGCCT, 4460.000000,548.000000, 0.890575,0.109425, 620 chr1 4690276 4690277 rs74051907 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,C, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop,maf-5-all-pops 620 chr1 4690717 4690718 rs7526898 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4078.000000,930.000000, 0.814297,0.185703, maf-5-some-pop 620 chr1 4690754 4690755 rs114657865 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 620 chr1 4690917 4690918 rs6680594 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 923.000000,4085.000000, 0.184305,0.815695, maf-5-some-pop 620 chr1 4690970 4690977 rs34057361 0 + GCAAAGC GCAAAGC -/GCAAAGC genomic deletion unknown 0 0 unknown range 1 9 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER,PJP,TISHKOFF, 2 -,GCAAAGC, 4696.000000,312.000000, 0.937700,0.062300, 620 chr1 4690988 4690989 rs74051908 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 67.000000,4941.000000, 0.013379,0.986621, 620 chr1 4691152 4691153 rs115282413 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop,maf-5-all-pops 620 chr1 4691181 4691182 rs4654577 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 347.000000,4661.000000, 0.069289,0.930711, maf-5-some-pop 620 chr1 4692155 4692156 rs34669494 0 + T T A/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,T, 2089.000000,2919.000000, 0.417133,0.582867, maf-5-some-pop,maf-5-all-pops 620 chr1 4692524 4692525 rs72637533 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF, 2 A,G, 1890.000000,3118.000000, 0.377396,0.622604, maf-5-some-pop,maf-5-all-pops 620 chr1 4692534 4692535 rs115424966 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 221.000000,4787.000000, 0.044129,0.955871, 620 chr1 4692544 4692565 rs199896968 0 + GCAGCCCACAGCCCATAGCAT GCAGCCCACAGCCCATAGCAT -/GCAGCCCACAGCCCATAGCAT genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,GMI,LUNTER, 2 -,GCAGCCCACAGCCCATAGCAT, 397.000000,4611.000000, 0.079273,0.920727, 620 chr1 4692588 4692589 rs114340086 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 395.000000,4613.000000, 0.078874,0.921126, maf-5-some-pop,maf-5-all-pops 620 chr1 4692634 4692635 rs61764970 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,GMI,SSMP, 2 A,C, 1940.000000,3068.000000, 0.387380,0.612620, 620 chr1 4692641 4692642 rs61764971 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,BL,GMI,SSMP, 2 A,C, 2038.000000,2970.000000, 0.406949,0.593051, 620 chr1 4693110 4693111 rs149115540 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,EVA-GONL,GMI, 2 C,T, 3690.000000,1318.000000, 0.736821,0.263179, 620 chr1 4693464 4693465 rs113487843 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,BUSHMAN,SSMP, 2 A,C, 1854.000000,3154.000000, 0.370208,0.629792, 620 chr1 4693484 4693485 rs201002516 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,SSMP, 2 C,G, 1339.000000,3669.000000, 0.267372,0.732628, 620 chr1 4693485 4693486 rs374202049 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,C, 3669.000000,1339.000000, 0.732628,0.267372, 620 chr1 4693529 4693530 rs79870916 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4613.000000,395.000000, 0.921126,0.078874, maf-5-some-pop,maf-5-all-pops 620 chr1 4693692 4693693 rs148881793 0 + G G C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 54.000000,4954.000000, 0.010783,0.989217, 620 chr1 4693694 4693695 rs74051909 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3936.000000,1072.000000, 0.785942,0.214058, maf-5-some-pop 620 chr1 4693695 4693696 rs143537497 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 620 chr1 4693746 4693747 rs75509901 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 393.000000,4615.000000, 0.078474,0.921526, maf-5-some-pop,maf-5-all-pops 620 chr1 4693930 4693931 rs6687814 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2857.000000,2151.000000, 0.570487,0.429513, maf-5-some-pop,maf-5-all-pops 620 chr1 4694241 4694242 rs7528064 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 878.000000,4130.000000, 0.175319,0.824681, maf-5-some-pop 620 chr1 4694256 4694257 rs7541459 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3724.000000,1284.000000, 0.743610,0.256390, maf-5-some-pop,maf-5-all-pops 620 chr1 4694271 4694272 rs34302319 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4469.000000,539.000000, 0.892372,0.107628, maf-5-some-pop,maf-5-all-pops 620 chr1 4694469 4694470 rs34642555 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 721.000000,4287.000000, 0.143970,0.856030, maf-5-some-pop 620 chr1 4694597 4694598 rs12405615 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4609.000000,399.000000, 0.920327,0.079673, maf-5-some-pop 620 chr1 4694660 4694661 rs115141365 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 620 chr1 4694662 4694663 rs12126476 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP, 2 G,T, 4240.000000,768.000000, 0.846645,0.153355, maf-5-some-pop,maf-5-all-pops 620 chr1 4695035 4695036 rs75660157 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 620 chr1 4695268 4695269 rs74051910 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,T, 4938.000000,70.000000, 0.986022,0.013978, 620 chr1 4695675 4695676 rs10915572 0 + C C A/C genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,TISHKOFF, 2 A,C, 3331.000000,1677.000000, 0.665136,0.334864, 620 chr1 4695747 4695748 rs148756082 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 620 chr1 4695757 4695758 rs142043271 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4951.000000,57.000000, 0.988618,0.011382, 620 chr1 4695908 4695909 rs4654452 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 A,T, 464.000000,4544.000000, 0.092652,0.907348, maf-5-some-pop,maf-5-all-pops 620 chr1 4696083 4696084 rs75035073 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4918.000000,90.000000, 0.982029,0.017971, 620 chr1 4696370 4696371 rs12744374 0 + C C C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP, 2 C,T, 4543.000000,465.000000, 0.907149,0.092851, maf-5-some-pop 620 chr1 4696468 4696469 rs74415318 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4780.000000,228.000000, 0.954473,0.045527, maf-5-some-pop 620 chr1 4696726 4696727 rs75611707 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 401.000000,4607.000000, 0.080072,0.919928, maf-5-some-pop,maf-5-all-pops 620 chr1 4696852 4696853 rs79001594 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4799.000000,209.000000, 0.958267,0.041733, maf-5-some-pop 620 chr1 4696879 4696880 rs77693004 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4809.000000,199.000000, 0.960264,0.039736, maf-5-some-pop,maf-5-all-pops 620 chr1 4696941 4696942 rs79255183 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop 620 chr1 4697214 4697215 rs75765799 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop,maf-5-all-pops 620 chr1 4697230 4697230 rs140494407 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,LUNTER,SSMP,TISHKOFF, 2 -,C, 4808.000000,200.000000, 0.960064,0.039936, 620 chr1 4697299 4697300 rs2101195 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2792.000000,2216.000000, 0.557508,0.442492, maf-5-some-pop,maf-5-all-pops 620 chr1 4697495 4697496 rs183475332 0 + T T G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 85.000000,4923.000000, 0.016973,0.983027, 620 chr1 4697505 4697506 rs12403911 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,TISHKOFF, 2 A,T, 934.000000,4074.000000, 0.186502,0.813498, maf-5-some-pop 620 chr1 4698270 4698271 rs75645239 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop,maf-5-all-pops 620 chr1 4698429 4698430 rs114975221 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, maf-5-some-pop,maf-5-all-pops 620 chr1 4698445 4698446 rs12122716 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4011.000000,997.000000, 0.800919,0.199081, maf-5-some-pop 620 chr1 4698558 4698559 rs12122754 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4061.000000,947.000000, 0.810903,0.189097, maf-5-some-pop 620 chr1 4698676 4698677 rs76059212 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, 620 chr1 4699046 4699047 rs116377981 0 + C C A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 138.000000,4870.000000, 0.027556,0.972444, 620 chr1 4699225 4699226 rs10915573 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4081.000000,927.000000, 0.814896,0.185104, 620 chr1 4699245 4699246 rs10753383 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 G,T, 4558.000000,450.000000, 0.910144,0.089856, maf-5-some-pop,maf-5-all-pops 620 chr1 4699602 4699603 rs7513957 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 4785.000000,223.000000, 0.955471,0.044529, 620 chr1 4699694 4699695 rs10915574 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 664.000000,4344.000000, 0.132588,0.867412, 620 chr1 4699859 4699860 rs114288092 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4736.000000,272.000000, 0.945687,0.054313, maf-5-some-pop 620 chr1 4700471 4700472 rs34719749 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 733.000000,4275.000000, 0.146366,0.853634, maf-5-some-pop,maf-5-all-pops 620 chr1 4700529 4700530 rs60448893 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,HGSV, 2 C,T, 4697.000000,311.000000, 0.937899,0.062101, 620 chr1 4700536 4700538 rs36042545 0 + AT AT -/AT genomic deletion unknown 0 0 unknown range 1 7 1000GENOMES,ABI,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,AT, 715.000000,4293.000000, 0.142772,0.857228, 620 chr1 4700538 4700538 rs553565507 0 + - - -/AT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,AT, 4934.000000,74.000000, 0.985224,0.014776, 620 chr1 4700637 4700638 rs7530579 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4316.000000,692.000000, 0.861821,0.138179, maf-5-some-pop 620 chr1 4700730 4700731 rs61265167 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 975.000000,4033.000000, 0.194688,0.805312, maf-5-some-pop,maf-5-all-pops 620 chr1 4700797 4700798 rs12122002 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1011.000000,3997.000000, 0.201877,0.798123, maf-5-some-pop 620 chr1 4701167 4701168 rs61685205 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,T, 4732.000000,276.000000, 0.944888,0.055112, maf-5-some-pop 620 chr1 4701257 4701258 rs10915575 0 + T T C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 993.000000,4015.000000, 0.198283,0.801717, maf-5-some-pop,maf-5-all-pops 620 chr1 4701889 4701890 rs2411891 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 620 chr1 4702295 4702296 rs61764994 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4220.000000,788.000000, 0.842652,0.157348, maf-5-some-pop 620 chr1 4702332 4702333 rs117062220 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 193.000000,4815.000000, 0.038538,0.961462, maf-5-some-pop,maf-5-all-pops 620 chr1 4702342 4702343 rs72637542 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 954.000000,4054.000000, 0.190495,0.809505, maf-5-some-pop,maf-5-all-pops 620 chr1 4702666 4702666 rs141010650 0 + - - -/CA genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,GMI,LUNTER, 2 -,CA, 4728.000000,280.000000, 0.944089,0.055911, 620 chr1 4702792 4702793 rs114270610 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4944.000000,64.000000, 0.987220,0.012780, maf-5-some-pop,maf-5-all-pops 620 chr1 4702949 4702950 rs61764995 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4308.000000,700.000000, 0.860224,0.139776, maf-5-some-pop,maf-5-all-pops 620 chr1 4703105 4703106 rs34993795 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4306.000000,702.000000, 0.859824,0.140176, maf-5-some-pop 620 chr1 4703346 4703347 rs58520355 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 4723.000000,285.000000, 0.943091,0.056909, maf-5-some-pop,maf-5-all-pops 620 chr1 4703785 4703785 rs60786353 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,BGI,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 0.000000,5008.000000, 0.000000,1.000000, 620 chr1 4704223 4704224 rs114758166 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,PJP, 2 A,C, 4297.000000,711.000000, 0.858027,0.141973, 620 chr1 4704224 4704225 rs117810779 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,GMI,PJP, 2 A,C, 4561.000000,447.000000, 0.910743,0.089257, 620 chr1 4704233 4704234 rs559371897 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 176.000000,4832.000000, 0.035144,0.964856, 620 chr1 4704234 4704235 rs528415364 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4927.000000,81.000000, 0.983826,0.016174, 620 chr1 4704524 4704525 rs61764997 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 3512.000000,1496.000000, 0.701278,0.298722, maf-5-some-pop 620 chr1 4704573 4704574 rs58047353 0 + T T A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,T, 1416.000000,3592.000000, 0.282748,0.717252, maf-5-some-pop,maf-5-all-pops 620 chr1 4704601 4704602 rs2035452 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 315.000000,4693.000000, 0.062899,0.937101, maf-5-some-pop 620 chr1 4704675 4704676 rs12723960 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP, 2 C,T, 441.000000,4567.000000, 0.088059,0.911941, maf-5-some-pop 620 chr1 4704783 4704784 rs12131622 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 132.000000,4876.000000, 0.026358,0.973642, 620 chr1 4704954 4704955 rs2035453 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 2422.000000,2586.000000, 0.483626,0.516374, maf-5-some-pop,maf-5-all-pops 620 chr1 4705128 4705128 rs61572836 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,BILGI_BIOE,GMI,PJP,SSMP, 2 -,T, 2685.000000,2323.000000, 0.536142,0.463858, 620 chr1 4705548 4705549 rs116950653 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop,maf-5-all-pops 620 chr1 4705589 4705590 rs117236196 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4816.000000,192.000000, 0.961661,0.038339, maf-5-some-pop,maf-5-all-pops 620 chr1 4705930 4705931 rs7533451 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1009.000000,3999.000000, 0.201478,0.798522, maf-5-some-pop 620 chr1 4706005 4706006 rs7542437 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3908.000000,1100.000000, 0.780351,0.219649, maf-5-some-pop 620 chr1 4706316 4706317 rs12741248 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1376.000000,3632.000000, 0.274760,0.725240, maf-5-some-pop,maf-5-all-pops 620 chr1 4706356 4706371 rs566022598 0 + TGTACTAAAGGAGGC TGTACTAAAGGAGGC -/TGTACTAAAGGAGGC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TGTACTAAAGGAGGC, 89.000000,4919.000000, 0.017772,0.982228, 620 chr1 4706520 4706521 rs10915576 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4684.000000,324.000000, 0.935304,0.064696, maf-5-some-pop 620 chr1 4706754 4706755 rs12125737 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3307.000000,1701.000000, 0.660343,0.339657, maf-5-some-pop,maf-5-all-pops 620 chr1 4707053 4707054 rs58968342 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 A,G, 4929.000000,79.000000, 0.984225,0.015775, maf-5-some-pop,maf-5-all-pops 620 chr1 4707090 4707091 rs118124840 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4817.000000,191.000000, 0.961861,0.038139, maf-5-some-pop,maf-5-all-pops 620 chr1 4707293 4707294 rs117456855 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 192.000000,4816.000000, 0.038339,0.961661, maf-5-some-pop,maf-5-all-pops 620 chr1 4707422 4707425 rs139953979 0 + TGA TGA -/TGA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BL,EVA-GONL,GMI,SSMP, 2 -,TGA, 1353.000000,3655.000000, 0.270168,0.729832, 620 chr1 4707590 4707591 rs28759408 0 + G G G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,SSAHASNP,TISHKOFF, 2 G,T, 219.000000,4789.000000, 0.043730,0.956270, 620 chr1 4707702 4707703 rs72857913 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 1379.000000,3629.000000, 0.275359,0.724641, maf-5-some-pop,maf-5-all-pops 620 chr1 4707998 4707999 rs57089911 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,SSMP, 2 A,G, 4762.000000,246.000000, 0.950879,0.049121, maf-5-some-pop,maf-5-all-pops 620 chr1 4708360 4708361 rs148633460 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 620 chr1 4708433 4708434 rs79894912 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops 620 chr1 4708725 4708726 rs74344603 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4762.000000,246.000000, 0.950879,0.049121, maf-5-some-pop 620 chr1 4709053 4709054 rs7535194 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3429.000000,1579.000000, 0.684704,0.315296, maf-5-some-pop,maf-5-all-pops 620 chr1 4709153 4709154 rs74051912 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 A,G, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 620 chr1 4709350 4709352 rs113339251 0 + AG AG -/AG genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BUSHMAN,LUNTER,SSMP,TISHKOFF, 2 -,AG, 97.000000,4911.000000, 0.019369,0.980631, 620 chr1 4709373 4709374 rs112396616 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BL,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 1660.000000,3348.000000, 0.331470,0.668530, 620 chr1 4709386 4709386 rs376199535 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,BILGI_BIOE, 2 -,C, 3544.000000,1464.000000, 0.707668,0.292332, 620 chr1 4709399 4709400 rs61764999 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 3334.000000,1674.000000, 0.665735,0.334265, maf-5-some-pop,maf-5-all-pops 620 chr1 4709723 4709724 rs143684698 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4830.000000,178.000000, 0.964457,0.035543, 620 chr1 4709777 4709778 rs76422412 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 243.000000,4765.000000, 0.048522,0.951478, maf-5-some-pop 620 chr1 4709843 4709844 rs189706390 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, 620 chr1 4710129 4710130 rs78180471 0 + A A A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4914.000000,94.000000, 0.981230,0.018770, 620 chr1 4710314 4710315 rs12405506 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4000.000000,1008.000000, 0.798722,0.201278, maf-5-some-pop,maf-5-all-pops 620 chr1 4710480 4710481 rs10799250 0 + T T C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1716.000000,3292.000000, 0.342652,0.657348, maf-5-some-pop,maf-5-all-pops 620 chr1 4710485 4710486 rs10915577 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3291.000000,1717.000000, 0.657149,0.342851, maf-5-some-pop,maf-5-all-pops 620 chr1 4710574 4710575 rs12071910 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1372.000000,3636.000000, 0.273962,0.726038, maf-5-some-pop,maf-5-all-pops 620 chr1 4710674 4710675 rs2411892 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BGI,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, 620 chr1 4710761 4710762 rs12071978 0 + G G G/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4367.000000,641.000000, 0.872005,0.127995, maf-5-some-pop,maf-5-all-pops 620 chr1 4710765 4710766 rs117751400 0 + G G C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 194.000000,4814.000000, 0.038738,0.961262, maf-5-some-pop,maf-5-all-pops 620 chr1 4710787 4710788 rs117026009 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 A,G, 4726.000000,282.000000, 0.943690,0.056310, maf-5-some-pop,maf-5-all-pops 620 chr1 4710953 4710954 rs74051915 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 G,T, 4033.000000,975.000000, 0.805312,0.194688, maf-5-some-pop,maf-5-all-pops 620 chr1 4711000 4711001 rs74051917 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,ILLUMINA-UK, 2 C,T, 91.000000,4917.000000, 0.018171,0.981829, maf-5-some-pop,maf-5-all-pops 620 chr1 4711300 4711301 rs12405862 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3328.000000,1680.000000, 0.664537,0.335463, maf-5-some-pop,maf-5-all-pops 620 chr1 4711419 4711421 rs34352274 0 + GT GT -/GT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,ABI,LUNTER,PJP,SSMP, 2 -,GT, 759.000000,4249.000000, 0.151558,0.848442, 620 chr1 4711441 4711442 rs59373147 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BGI,EVA-GONL,GMI,HGSV, 2 A,G, 985.000000,4023.000000, 0.196685,0.803315, 620 chr1 4711449 4711453 rs144351749 0 + GTGT GTGT -/GTGT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BILGI_BIOE,GMI,LUNTER,SSMP, 2 -,GTGT, 1008.000000,4000.000000, 0.201278,0.798722, 620 chr1 4711455 4711456 rs75580867 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BGI,TISHKOFF, 2 G,T, 4904.000000,104.000000, 0.979233,0.020767, 620 chr1 4711664 4711665 rs56951202 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,SSMP, 2 A,G, 638.000000,4370.000000, 0.127396,0.872604, maf-5-some-pop,maf-5-all-pops 620 chr1 4711893 4711894 rs148795161 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4541.000000,467.000000, 0.906749,0.093251, 620 chr1 4712440 4712441 rs74950234 0 + G G G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 4697.000000,311.000000, 0.937899,0.062101, maf-5-some-pop 620 chr1 4712483 4712484 rs6702210 0 + T T C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 985.000000,4023.000000, 0.196685,0.803315, maf-5-some-pop 620 chr1 4712700 4712701 rs56359200 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,T, 4074.000000,934.000000, 0.813498,0.186502, maf-5-some-pop 620 chr1 4712706 4712707 rs112387116 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB, 2 C,G, 4935.000000,73.000000, 0.985423,0.014577, 620 chr1 4712747 4712748 rs60993281 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4099.000000,909.000000, 0.818490,0.181510, maf-5-some-pop,maf-5-all-pops 620 chr1 4712764 4712771 rs139783037 0 + GGTTGCA GGTTGCA -/GGTTGCA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,LUNTER, 2 -,GGTTGCA, 63.000000,4945.000000, 0.012580,0.987420, 620 chr1 4712782 4712783 rs74051918 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 620 chr1 4712984 4712985 rs569164696 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4951.000000,57.000000, 0.988618,0.011382, 620 chr1 4712987 4712988 rs55778567 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4034.000000,974.000000, 0.805511,0.194489, maf-5-some-pop,maf-5-all-pops 620 chr1 4713044 4713045 rs1466520 0 + A A A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 555.000000,4453.000000, 0.110823,0.889177, maf-5-some-pop 620 chr1 4713220 4713221 rs35360221 0 + C C A/C genomic single unknown 0 0 near-gene-5 exact 1 9 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,TISHKOFF, 2 A,C, 412.000000,4596.000000, 0.082268,0.917732, maf-5-some-pop 620 chr1 4713828 4713829 rs116564644 0 + T T C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, maf-5-some-pop,maf-5-all-pops 620 chr1 4714322 4714323 rs116065312 0 + G G A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,MPI_MOLGEN,SSMP, 2 A,G, 552.000000,4456.000000, 0.110224,0.889776, maf-5-some-pop,maf-5-all-pops 620 chr1 4714526 4714527 rs12131128 0 + G G G/T genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,EVA-GONL,SC_SNP,SSMP, 2 G,T, 4231.000000,777.000000, 0.844848,0.155152, 620 chr1 4714714 4714715 rs370377388 0 + G G C/G genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,G, 156.000000,4852.000000, 0.031150,0.968850, 620 chr1 4714848 4714849 rs146333216 0 + C C C/T genomic single unknown 0 0 near-gene-5 exact 1 2 1000GENOMES,SSMP, 2 C,T, 4544.000000,464.000000, 0.907348,0.092652, 620 chr1 4714994 4714995 rs61765001 0 + A A A/G genomic single unknown 0 0 near-gene-5 exact 1 4 1000GENOMES,BCMHGSC_JDW,EVA-GONL,SSMP, 2 A,G, 3860.000000,1148.000000, 0.770767,0.229233, maf-5-some-pop,maf-5-all-pops 620 chr1 4715136 4715137 rs76277841 0 + C C C/G genomic single unknown 0 0 untranslated-5 exact 1 5 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,SSMP, 2 C,G, 4079.000000,929.000000, 0.814497,0.185503, maf-5-some-pop,maf-5-all-pops 620 chr1 4715429 4715430 rs376104867 0 + C C C/T genomic single unknown 0 0 untranslated-5 exact 1 2 1000GENOMES,NHLBI-ESP, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 620 chr1 4715647 4715648 rs180746966 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 G,T, 261.000000,4747.000000, 0.052117,0.947883, 620 chr1 4715974 4715975 rs149110293 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4747.000000,261.000000, 0.947883,0.052117, 620 chr1 4716020 4716021 rs186660469 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 76.000000,4932.000000, 0.015176,0.984824, 620 chr1 4716056 4716057 rs372847866 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,G, 262.000000,4746.000000, 0.052316,0.947684, 620 chr1 4717081 4717082 rs142396152 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 620 chr1 4717240 4717241 rs116818407 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 4938.000000,70.000000, 0.986022,0.013978, maf-5-some-pop,maf-5-all-pops 620 chr1 4717248 4717249 rs6690745 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3705.000000,1303.000000, 0.739816,0.260184, maf-5-some-pop 620 chr1 4717628 4717629 rs9970009 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,EVA-GONL,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,G, 3717.000000,1291.000000, 0.742212,0.257788, maf-5-some-pop,maf-5-all-pops 620 chr1 4717644 4717645 rs114416707 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4943.000000,65.000000, 0.987021,0.012979, 620 chr1 4717895 4717896 rs116648062 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4833.000000,175.000000, 0.965056,0.034944, maf-5-some-pop,maf-5-all-pops 620 chr1 4718392 4718393 rs139438405 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4945.000000,63.000000, 0.987420,0.012580, 621 chr1 4718723 4718724 rs79890195 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4957.000000,51.000000, 0.989816,0.010184, 621 chr1 4718755 4718756 rs2170676 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1217.000000,3791.000000, 0.243011,0.756989, maf-5-some-pop,maf-5-all-pops 621 chr1 4718979 4718980 rs78272719 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 338.000000,4670.000000, 0.067492,0.932508, maf-5-some-pop,maf-5-all-pops 621 chr1 4719019 4719020 rs7549960 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4000.000000,1008.000000, 0.798722,0.201278, maf-5-some-pop,maf-5-all-pops 621 chr1 4719085 4719086 rs76789200 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,MPI_MOLGEN,SSMP, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop,maf-5-all-pops 621 chr1 4719455 4719456 rs72857925 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 621 chr1 4719491 4719492 rs57261249 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 A,C, 75.000000,4933.000000, 0.014976,0.985024, 621 chr1 4719542 4719543 rs72857927 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4924.000000,84.000000, 0.983227,0.016773, 621 chr1 4719654 4719655 rs115323560 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4910.000000,98.000000, 0.980431,0.019569, maf-5-some-pop,maf-5-all-pops 621 chr1 4720029 4720030 rs7544371 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4713.000000,295.000000, 0.941094,0.058906, maf-5-some-pop 621 chr1 4720289 4720290 rs6691554 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,G, 1726.000000,3282.000000, 0.344649,0.655351, maf-5-some-pop,maf-5-all-pops 621 chr1 4720500 4720501 rs115637554 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 361.000000,4647.000000, 0.072085,0.927915, maf-5-some-pop 621 chr1 4720729 4720730 rs974635 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,GMI,SC_JCM,TSC-CSHL, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 621 chr1 4720782 4720782 rs149138785 0 + - - -/A genomic insertion unknown 0 0 intron between 1 2 1000GENOMES,LUNTER, 2 -,A, 4889.000000,119.000000, 0.976238,0.023762, 621 chr1 4721206 4721207 rs6426432 0 + G G C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3415.000000,1593.000000, 0.681909,0.318091, maf-5-some-pop,maf-5-all-pops 621 chr1 4721424 4721425 rs6658403 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4384.000000,624.000000, 0.875399,0.124601, maf-5-some-pop,maf-5-all-pops 621 chr1 4721682 4721683 rs12406824 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 2710.000000,2298.000000, 0.541134,0.458866, maf-5-some-pop,maf-5-all-pops 621 chr1 4721792 4721793 rs12406838 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 823.000000,4185.000000, 0.164337,0.835663, maf-5-some-pop 621 chr1 4722142 4722143 rs201633084 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 -,T, 168.000000,4840.000000, 0.033546,0.966454, 621 chr1 4722185 4722186 rs12080289 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 A,G, 174.000000,4834.000000, 0.034744,0.965256, maf-5-some-pop,maf-5-all-pops 621 chr1 4722430 4722431 rs2035454 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop 621 chr1 4722442 4722443 rs1531830 0 + T T C/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4706.000000,302.000000, 0.939696,0.060304, maf-5-some-pop 621 chr1 4722446 4722447 rs1531831 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 435.000000,4573.000000, 0.086861,0.913139, maf-5-some-pop 621 chr1 4722575 4722576 rs116235401 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 621 chr1 4722585 4722586 rs7517225 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2698.000000,2310.000000, 0.538738,0.461262, maf-5-some-pop,maf-5-all-pops 621 chr1 4722609 4722610 rs150912044 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, 621 chr1 4722663 4722664 rs139401940 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4843.000000,165.000000, 0.967053,0.032947, 621 chr1 4722950 4722951 rs7517517 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3624.000000,1384.000000, 0.723642,0.276358, maf-5-some-pop,maf-5-all-pops 621 chr1 4723045 4723046 rs12408160 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4049.000000,959.000000, 0.808506,0.191494, maf-5-some-pop,maf-5-all-pops 621 chr1 4723248 4723249 rs10799251 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3508.000000,1500.000000, 0.700479,0.299521, maf-5-some-pop,maf-5-all-pops 621 chr1 4723313 4723314 rs12408195 0 + C C C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4050.000000,958.000000, 0.808706,0.191294, maf-5-some-pop 621 chr1 4723396 4723409 rs111232180 0 + GAAAGCACCTCCA GAAAGCACCTCCA -/GAAAGCACCTCCA genomic deletion unknown 0 0 intron range 1 4 1000GENOMES,BL,BUSHMAN,LUNTER, 2 -,GAAAGCACCTCCA, 2341.000000,2667.000000, 0.467452,0.532548, 621 chr1 4723417 4723418 rs116035264 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 172.000000,4836.000000, 0.034345,0.965655, maf-5-some-pop,maf-5-all-pops 621 chr1 4723421 4723422 rs10799252 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4737.000000,271.000000, 0.945887,0.054113, maf-5-some-pop 621 chr1 4723437 4723438 rs10799253 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4737.000000,271.000000, 0.945887,0.054113, maf-5-some-pop 621 chr1 4723780 4723781 rs116056075 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,TISHKOFF, 2 A,G, 4495.000000,513.000000, 0.897564,0.102436, maf-5-some-pop,maf-5-all-pops 621 chr1 4723841 4723842 rs12083135 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 514.000000,4494.000000, 0.102636,0.897364, maf-5-some-pop 621 chr1 4723916 4723917 rs10915578 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3847.000000,1161.000000, 0.768171,0.231829, maf-5-some-pop 621 chr1 4723990 4723991 rs116033920 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 621 chr1 4724047 4724048 rs17455108 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop 621 chr1 4724133 4724134 rs77390929 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4417.000000,591.000000, 0.881989,0.118011, maf-5-some-pop,maf-5-all-pops 621 chr1 4724230 4724231 rs12135245 0 + G G C/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 938.000000,4070.000000, 0.187300,0.812700, maf-5-some-pop 621 chr1 4724249 4724250 rs78173795 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4947.000000,61.000000, 0.987819,0.012180, 621 chr1 4724269 4724270 rs12140542 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 478.000000,4530.000000, 0.095447,0.904553, maf-5-some-pop 621 chr1 4724465 4724466 rs115364326 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 621 chr1 4724566 4724567 rs11809036 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,TISHKOFF, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 621 chr1 4724631 4724632 rs2035455 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop 621 chr1 4724956 4724957 rs17421247 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4508.000000,500.000000, 0.900160,0.099840, maf-5-some-pop 621 chr1 4725282 4725283 rs118062290 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, 621 chr1 4725380 4725381 rs116651000 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 148.000000,4860.000000, 0.029553,0.970447, maf-5-some-pop,maf-5-all-pops 621 chr1 4725383 4725384 rs76132404 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 594.000000,4414.000000, 0.118610,0.881390, maf-5-some-pop,maf-5-all-pops 621 chr1 4725495 4725496 rs11588149 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 C,T, 4589.000000,419.000000, 0.916334,0.083666, maf-5-some-pop 621 chr1 4725627 4725628 rs11588169 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4744.000000,264.000000, 0.947284,0.052716, maf-5-some-pop 621 chr1 4725872 4725873 rs61765003 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop 621 chr1 4725993 4725994 rs75686547 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4921.000000,87.000000, 0.982628,0.017372, 621 chr1 4726057 4726058 rs116089463 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 621 chr1 4726072 4726073 rs61765004 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 440.000000,4568.000000, 0.087859,0.912141, maf-5-some-pop 621 chr1 4726142 4726143 rs185591148 0 + G G C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 76.000000,4932.000000, 0.015176,0.984824, 621 chr1 4726453 4726454 rs12567266 0 + T T C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3338.000000,1670.000000, 0.666534,0.333466, maf-5-some-pop,maf-5-all-pops 621 chr1 4726480 4726481 rs12752003 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4508.000000,500.000000, 0.900160,0.099840, maf-5-some-pop 621 chr1 4726531 4726532 rs12565906 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3341.000000,1667.000000, 0.667133,0.332867, maf-5-some-pop,maf-5-all-pops 621 chr1 4726551 4726552 rs72857936 0 + G G C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 2347.000000,2661.000000, 0.468650,0.531350, maf-5-some-pop,maf-5-all-pops 621 chr1 4726576 4726577 rs115009247 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 621 chr1 4726684 4726685 rs12137938 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP, 2 C,T, 3339.000000,1669.000000, 0.666733,0.333267, maf-5-some-pop,maf-5-all-pops 621 chr1 4726846 4726847 rs11584497 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 2366.000000,2642.000000, 0.472444,0.527556, maf-5-some-pop,maf-5-all-pops 621 chr1 4726897 4726898 rs113348625 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 3623.000000,1385.000000, 0.723442,0.276558, 621 chr1 4726898 4726899 rs10799254 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 291.000000,4717.000000, 0.058107,0.941893, 621 chr1 4726992 4726993 rs114168592 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,MPI_MOLGEN,SSMP,TISHKOFF, 2 C,T, 4545.000000,463.000000, 0.907548,0.092452, maf-5-some-pop,maf-5-all-pops 621 chr1 4727024 4727025 rs144096630 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4744.000000,264.000000, 0.947284,0.052716, 621 chr1 4727025 4727026 rs12137092 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 A,G, 2011.000000,2997.000000, 0.401558,0.598442, 621 chr1 4727065 4727066 rs116403426 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4854.000000,154.000000, 0.969249,0.030751, maf-5-some-pop,maf-5-all-pops 621 chr1 4727085 4727086 rs6658098 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,T, 2666.000000,2342.000000, 0.532348,0.467652, maf-5-some-pop,maf-5-all-pops 621 chr1 4727242 4727243 rs6663166 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 434.000000,4574.000000, 0.086661,0.913339, maf-5-some-pop 621 chr1 4727256 4727257 rs76508223 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,MPI_MOLGEN,SSMP, 2 C,T, 4744.000000,264.000000, 0.947284,0.052716, maf-5-some-pop,maf-5-all-pops 621 chr1 4727289 4727290 rs12138132 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 500.000000,4508.000000, 0.099840,0.900160, maf-5-some-pop 621 chr1 4727529 4727530 rs12133670 0 + G G A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 502.000000,4506.000000, 0.100240,0.899760, maf-5-some-pop 621 chr1 4727629 4727630 rs117461155 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4835.000000,173.000000, 0.965455,0.034545, 621 chr1 4727857 4727858 rs115849063 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 621 chr1 4728045 4728046 rs113311795 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 957.000000,4051.000000, 0.191094,0.808906, maf-5-some-pop 621 chr1 4728078 4728079 rs6666521 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB,TISHKOFF, 2 A,G, 4855.000000,153.000000, 0.969449,0.030551, 621 chr1 4728228 4728229 rs12133909 0 + G G G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4508.000000,500.000000, 0.900160,0.099840, 621 chr1 4728264 4728266 rs149839663 0 + CT CT -/CT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,CT, 418.000000,4590.000000, 0.083467,0.916534, 621 chr1 4728273 4728273 rs35921768 0 + - - -/A genomic insertion unknown 0 0 intron between 1 6 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,HUMANGENOME_JCVI, 2 -,A, 1007.000000,4001.000000, 0.201078,0.798922, 621 chr1 4728382 4728384 rs56871532 0 + TG TG -/TG genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,SSMP, 2 -,TG, 3143.000000,1865.000000, 0.627596,0.372404, 621 chr1 4728397 4728398 rs6703379 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,TISHKOFF, 2 A,G, 3346.000000,1662.000000, 0.668131,0.331869, 621 chr1 4728405 4728406 rs6703380 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM_SSAHASNP,BL,GMI,HGSV, 2 A,G, 963.000000,4045.000000, 0.192292,0.807708, 621 chr1 4728406 4728407 rs11809480 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,CSHL-HAPMAP, 2 C,T, 158.000000,4850.000000, 0.031549,0.968450, 621 chr1 4728572 4728573 rs140190926 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 621 chr1 4728816 4728817 rs6703802 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 3178.000000,1830.000000, 0.634585,0.365415, maf-5-some-pop,maf-5-all-pops 621 chr1 4728844 4728845 rs118185704 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 4835.000000,173.000000, 0.965455,0.034545, maf-5-some-pop,maf-5-all-pops 621 chr1 4729495 4729496 rs61353382 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 4834.000000,174.000000, 0.965256,0.034744, 621 chr1 4729554 4729555 rs6667973 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3670.000000,1338.000000, 0.732827,0.267173, maf-5-some-pop,maf-5-all-pops 621 chr1 4729583 4729584 rs12043895 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4186.000000,822.000000, 0.835863,0.164137, 621 chr1 4730215 4730216 rs114153623 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 621 chr1 4730282 4730283 rs4654582 0 + T T A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3524.000000,1484.000000, 0.703674,0.296326, maf-5-some-pop,maf-5-all-pops 621 chr1 4730451 4730452 rs4654583 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2348.000000,2660.000000, 0.468850,0.531150, maf-5-some-pop,maf-5-all-pops 621 chr1 4730891 4730892 rs72857940 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 621 chr1 4730959 4730960 rs4281299 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 451.000000,4557.000000, 0.090056,0.909944, maf-5-some-pop 621 chr1 4731116 4731117 rs12141394 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4468.000000,540.000000, 0.892173,0.107827, maf-5-some-pop 621 chr1 4731136 4731137 rs4654584 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 3380.000000,1628.000000, 0.674920,0.325080, maf-5-some-pop,maf-5-all-pops 621 chr1 4731155 4731156 rs12139858 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4293.000000,715.000000, 0.857228,0.142772, maf-5-some-pop,maf-5-all-pops 621 chr1 4731249 4731250 rs12141432 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4468.000000,540.000000, 0.892173,0.107827, 621 chr1 4731446 4731447 rs10915582 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,TISHKOFF, 2 A,G, 3381.000000,1627.000000, 0.675120,0.324880, maf-5-some-pop,maf-5-all-pops 621 chr1 4731465 4731472 rs76747477 0 + AGGACAT AGGACAT -/AGGACAT genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP,TISHKOFF, 2 -,AGGACAT, 1625.000000,3383.000000, 0.324481,0.675519, 621 chr1 4731485 4731486 rs10915583 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA-UK,SC_SNP,TISHKOFF, 2 C,G, 1628.000000,3380.000000, 0.325080,0.674920, maf-5-some-pop,maf-5-all-pops 621 chr1 4731540 4731541 rs6679686 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4068.000000,940.000000, 0.812300,0.187700, maf-5-some-pop,maf-5-all-pops 621 chr1 4731632 4731633 rs12090863 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 621 chr1 4731676 4731677 rs10799255 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3265.000000,1743.000000, 0.651957,0.348043, maf-5-some-pop,maf-5-all-pops 621 chr1 4731688 4731689 rs10799256 0 + T T C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1748.000000,3260.000000, 0.349042,0.650958, maf-5-some-pop,maf-5-all-pops 621 chr1 4731698 4731699 rs28501560 0 + C C C/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 4061.000000,947.000000, 0.810903,0.189097, maf-5-some-pop,maf-5-all-pops 621 chr1 4731927 4731928 rs11587129 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1636.000000,3372.000000, 0.326677,0.673323, maf-5-some-pop 621 chr1 4732093 4732094 rs61483048 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,HGSV, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 621 chr1 4732131 4732132 rs12138000 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 533.000000,4475.000000, 0.106430,0.893570, maf-5-some-pop 621 chr1 4732174 4732175 rs72857942 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 621 chr1 4732317 4732318 rs55753116 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4061.000000,947.000000, 0.810903,0.189097, maf-5-some-pop,maf-5-all-pops 621 chr1 4732333 4732334 rs1564666 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BUSHMAN,ENSEMBL,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 4556.000000,452.000000, 0.909744,0.090256, maf-5-some-pop 621 chr1 4732472 4732473 rs1564667 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 3620.000000,1388.000000, 0.722843,0.277157, maf-5-some-pop 621 chr1 4732507 4732508 rs145565177 0 + C C A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 75.000000,4933.000000, 0.014976,0.985024, 621 chr1 4732904 4732905 rs57583629 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 C,G, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 621 chr1 4732983 4732984 rs74051928 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 C,G, 4929.000000,79.000000, 0.984225,0.015775, 621 chr1 4733033 4733034 rs113077651 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,MPI_MOLGEN, 2 A,G, 4930.000000,78.000000, 0.984425,0.015575, 621 chr1 4733077 4733078 rs74051929 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4794.000000,214.000000, 0.957268,0.042732, 621 chr1 4733347 4733348 rs4654586 0 + T T A/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 3544.000000,1464.000000, 0.707668,0.292332, maf-5-some-pop 621 chr1 4733354 4733355 rs4654455 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 998.000000,4010.000000, 0.199281,0.800719, maf-5-some-pop,maf-5-all-pops 621 chr1 4733720 4733721 rs16839440 0 + C C C/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,G, 4084.000000,924.000000, 0.815495,0.184505, maf-5-some-pop 621 chr1 4733929 4733930 rs60249354 0 + A A A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,T, 4930.000000,78.000000, 0.984425,0.015575, 621 chr1 4733932 4733933 rs58313685 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 G,T, 4928.000000,80.000000, 0.984026,0.015974, 621 chr1 4734089 4734090 rs77073053 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 7 1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,LUNTER,SSMP,TISHKOFF, 2 -,C, 2536.000000,2472.000000, 0.506390,0.493610, 621 chr1 4734513 4734514 rs12411035 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, 2 A,G, 4012.000000,996.000000, 0.801118,0.198882, maf-5-some-pop,maf-5-all-pops 621 chr1 4735055 4735056 rs13376219 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 1074.000000,3934.000000, 0.214457,0.785543, maf-5-some-pop,maf-5-all-pops 621 chr1 4735260 4735261 rs13376666 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 2812.000000,2196.000000, 0.561502,0.438498, maf-5-some-pop,maf-5-all-pops 621 chr1 4736165 4736166 rs75303035 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BGI,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 621 chr1 4736632 4736633 rs116819981 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 621 chr1 4736687 4736688 rs115557235 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4940.000000,68.000000, 0.986422,0.013578, 621 chr1 4736773 4736774 rs13376167 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,C, 846.000000,4162.000000, 0.168930,0.831070, maf-5-some-pop,maf-5-all-pops 621 chr1 4736895 4736896 rs12092619 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,T, 4939.000000,69.000000, 0.986222,0.013778, 621 chr1 4737054 4737055 rs11810326 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4373.000000,635.000000, 0.873203,0.126797, 621 chr1 4737140 4737141 rs11810776 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 638.000000,4370.000000, 0.127396,0.872604, 621 chr1 4737178 4737179 rs114730446 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, 621 chr1 4737217 4737218 rs112196766 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,C, 4940.000000,68.000000, 0.986422,0.013578, 621 chr1 4737395 4737396 rs114709753 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 621 chr1 4737441 4737442 rs112096493 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,G, 4940.000000,68.000000, 0.986422,0.013578, 621 chr1 4737463 4737464 rs11810730 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4375.000000,633.000000, 0.873602,0.126398, maf-5-some-pop,maf-5-all-pops 621 chr1 4737477 4737478 rs78493523 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4065.000000,943.000000, 0.811701,0.188299, maf-5-some-pop,maf-5-all-pops 621 chr1 4737492 4737493 rs72637576 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 633.000000,4375.000000, 0.126398,0.873602, maf-5-some-pop,maf-5-all-pops 621 chr1 4737530 4737531 rs16839450 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4035.000000,973.000000, 0.805711,0.194289, maf-5-some-pop,maf-5-all-pops 621 chr1 4737623 4737624 rs77551369 0 + A A A/C genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4375.000000,633.000000, 0.873602,0.126398, maf-5-some-pop 621 chr1 4737650 4737652 rs111902962 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP, 2 -,AA, 939.000000,4069.000000, 0.187500,0.812500, 621 chr1 4737657 4737658 rs77605934 0 + A A A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,GMI, 2 A,T, 4368.000000,640.000000, 0.872204,0.127796, 621 chr1 4737665 4737666 rs115426150 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB, 2 A,G, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 621 chr1 4737691 4737692 rs78718363 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 621 chr1 4737692 4737693 rs16839451 0 + G G A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 964.000000,4044.000000, 0.192492,0.807508, maf-5-some-pop 621 chr1 4737693 4737694 rs114156847 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 621 chr1 4737804 4737805 rs564460620 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 1 1000GENOMES, 2 -,A, 2785.000000,2223.000000, 0.556110,0.443890, 621 chr1 4737815 4737816 rs114006695 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, 621 chr1 4737822 4737823 rs116280459 0 + C C A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,C, 309.000000,4699.000000, 0.061701,0.938299, 621 chr1 4737839 4737840 rs76211527 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 621 chr1 4737889 4737890 rs10915585 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4035.000000,973.000000, 0.805711,0.194289, maf-5-some-pop,maf-5-all-pops 621 chr1 4738039 4738040 rs79844026 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA, 2 A,G, 187.000000,4821.000000, 0.037340,0.962660, maf-5-some-pop,maf-5-all-pops 621 chr1 4738057 4738058 rs2071990 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4398.000000,610.000000, 0.878195,0.121805, maf-5-some-pop 621 chr1 4738354 4738355 rs2071991 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4063.000000,945.000000, 0.811302,0.188698, maf-5-some-pop,maf-5-all-pops 621 chr1 4738393 4738394 rs2071992 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,YUSUKE, 2 A,G, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 621 chr1 4738419 4738420 rs2071993 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 4795.000000,213.000000, 0.957468,0.042532, maf-5-some-pop 621 chr1 4738442 4738443 rs2071994 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 4698.000000,310.000000, 0.938099,0.061901, maf-5-some-pop 621 chr1 4738483 4738484 rs61765024 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4089.000000,919.000000, 0.816494,0.183506, maf-5-some-pop,maf-5-all-pops 621 chr1 4738677 4738678 rs2071995 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4067.000000,941.000000, 0.812101,0.187899, maf-5-some-pop,maf-5-all-pops 621 chr1 4738704 4738705 rs2071996 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3997.000000,1011.000000, 0.798123,0.201877, maf-5-some-pop,maf-5-all-pops 621 chr1 4738787 4738788 rs59390834 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 632.000000,4376.000000, 0.126198,0.873802, maf-5-some-pop,maf-5-all-pops 621 chr1 4738857 4738858 rs61093582 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4398.000000,610.000000, 0.878195,0.121805, maf-5-some-pop,maf-5-all-pops 621 chr1 4738919 4738920 rs74697122 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 310.000000,4698.000000, 0.061901,0.938099, maf-5-some-pop 621 chr1 4738962 4738963 rs116085734 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop,maf-5-all-pops 621 chr1 4739087 4739088 rs74562680 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 213.000000,4795.000000, 0.042532,0.957468, maf-5-some-pop 621 chr1 4739240 4739241 rs11811287 0 + A A A/C genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 3994.000000,1014.000000, 0.797524,0.202476, maf-5-some-pop,maf-5-all-pops 621 chr1 4739424 4739425 rs11809744 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,AFFY,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 C,G, 948.000000,4060.000000, 0.189297,0.810703, maf-5-some-pop,maf-5-all-pops 621 chr1 4739425 4739426 rs117954819 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,JMKIDD_LAB, 2 A,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop,maf-5-all-pops 621 chr1 4739441 4739441 rs148014994 0 + - - -/ATGA genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,ATGA, 4703.000000,305.000000, 0.939097,0.060903, 621 chr1 4739491 4739492 rs116483127 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 214.000000,4794.000000, 0.042732,0.957268, maf-5-some-pop 621 chr1 4739600 4739601 rs72637581 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3995.000000,1013.000000, 0.797724,0.202276, maf-5-some-pop,maf-5-all-pops 621 chr1 4739913 4739914 rs148479785 0 + G G G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 4901.000000,107.000000, 0.978634,0.021366, 621 chr1 4740117 4740118 rs72637582 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 633.000000,4375.000000, 0.126398,0.873602, maf-5-some-pop,maf-5-all-pops 621 chr1 4740586 4740587 rs116164993 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 G,T, 61.000000,4947.000000, 0.012180,0.987819, 621 chr1 4740785 4740786 rs11799715 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 632.000000,4376.000000, 0.126198,0.873802, maf-5-some-pop,maf-5-all-pops 621 chr1 4740816 4740817 rs115772559 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 205.000000,4803.000000, 0.040934,0.959065, maf-5-some-pop 621 chr1 4740851 4740852 rs60463828 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 633.000000,4375.000000, 0.126398,0.873602, maf-5-some-pop,maf-5-all-pops 621 chr1 4740893 4740894 rs114533913 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 621 chr1 4741023 4741024 rs115464622 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 211.000000,4797.000000, 0.042133,0.957867, maf-5-some-pop 621 chr1 4741032 4741033 rs72637585 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 632.000000,4376.000000, 0.126198,0.873802, maf-5-some-pop,maf-5-all-pops 621 chr1 4741136 4741137 rs79830517 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4803.000000,205.000000, 0.959065,0.040934, 621 chr1 4741149 4741150 rs115860060 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 302.000000,4706.000000, 0.060304,0.939696, maf-5-some-pop 621 chr1 4741361 4741362 rs72637587 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 632.000000,4376.000000, 0.126198,0.873802, maf-5-some-pop,maf-5-all-pops 621 chr1 4741456 4741457 rs146849679 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 621 chr1 4741481 4741482 rs114006221 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 621 chr1 4741643 4741644 rs116055295 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 621 chr1 4741925 4741926 rs114276835 0 + A A A/C genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,C, 4935.000000,73.000000, 0.985423,0.014577, maf-5-some-pop,maf-5-all-pops 621 chr1 4742335 4742336 rs116823806 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 621 chr1 4742516 4742517 rs12402269 0 + T T C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 1003.000000,4005.000000, 0.200280,0.799720, maf-5-some-pop,maf-5-all-pops 621 chr1 4742664 4742665 rs115416385 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 621 chr1 4742706 4742707 rs115143400 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4934.000000,74.000000, 0.985224,0.014776, maf-5-some-pop,maf-5-all-pops 621 chr1 4742775 4742776 rs150192852 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 275.000000,4733.000000, 0.054912,0.945088, 621 chr1 4743022 4743023 rs2859392 0 + C C C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 1948.000000,3060.000000, 0.388978,0.611022, maf-5-some-pop,maf-5-all-pops 621 chr1 4743628 4743629 rs59425660 0 + G G G/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4379.000000,629.000000, 0.874401,0.125599, maf-5-some-pop,maf-5-all-pops 621 chr1 4743703 4743704 rs763238 0 + C C C/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4347.000000,661.000000, 0.868011,0.131989, maf-5-some-pop 621 chr1 4744293 4744294 rs4993529 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4347.000000,661.000000, 0.868011,0.131989, maf-5-some-pop,maf-5-all-pops 621 chr1 4744525 4744526 rs10915586 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ILLUMINA,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 621 chr1 4745333 4745334 rs75143729 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4803.000000,205.000000, 0.959065,0.040934, maf-5-some-pop 621 chr1 4746209 4746210 rs72637589 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4379.000000,629.000000, 0.874401,0.125599, maf-5-some-pop,maf-5-all-pops 621 chr1 4746213 4746214 rs242043 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 422.000000,4586.000000, 0.084265,0.915735, maf-5-some-pop 621 chr1 4746436 4746437 rs61765026 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 421.000000,4587.000000, 0.084065,0.915935, maf-5-some-pop 621 chr1 4746512 4746513 rs72637591 0 + C C A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 630.000000,4378.000000, 0.125799,0.874201, maf-5-some-pop,maf-5-all-pops 621 chr1 4746597 4746598 rs17344947 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4702.000000,306.000000, 0.938898,0.061102, maf-5-some-pop 621 chr1 4746629 4746630 rs78014182 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4804.000000,204.000000, 0.959265,0.040735, maf-5-some-pop 621 chr1 4746707 4746708 rs111421938 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, 621 chr1 4747118 4747119 rs61765027 0 + G G G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4007.000000,1001.000000, 0.800120,0.199880, maf-5-some-pop,maf-5-all-pops 621 chr1 4747191 4747194 rs151230652 0 + TCT TCT -/TCT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,TCT, 61.000000,4947.000000, 0.012180,0.987819, 621 chr1 4747418 4747419 rs72637594 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 409.000000,4599.000000, 0.081669,0.918331, maf-5-some-pop,maf-5-all-pops 621 chr1 4747736 4747737 rs12747700 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,AFFY,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1241.000000,3767.000000, 0.247804,0.752196, maf-5-some-pop 621 chr1 4748173 4748174 rs6684528 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 G,T, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 621 chr1 4748189 4748190 rs116351988 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 204.000000,4804.000000, 0.040735,0.959265, 621 chr1 4748490 4748491 rs114461037 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 621 chr1 4748560 4748561 rs61765028 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 621 chr1 4748739 4748740 rs143923818 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 205.000000,4803.000000, 0.040934,0.959065, 621 chr1 4749075 4749076 rs4092257 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2978.000000,2030.000000, 0.594649,0.405351, maf-5-some-pop,maf-5-all-pops 621 chr1 4749102 4749103 rs4092258 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 298.000000,4710.000000, 0.059505,0.940495, 621 chr1 4749118 4749119 rs4654456 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,WI_SSAHASNP, 2 C,T, 4635.000000,373.000000, 0.925519,0.074481, maf-5-some-pop 621 chr1 4749145 4749146 rs3843298 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,TISHKOFF,TSC-CSHL, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 621 chr1 4749158 4749159 rs3843299 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,TISHKOFF,TSC-CSHL, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, maf-5-some-pop,maf-5-all-pops 621 chr1 4749839 4749840 rs16839466 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,G, 4782.000000,226.000000, 0.954872,0.045128, maf-5-some-pop 621 chr1 4750012 4750013 rs187148 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1300.000000,3708.000000, 0.259585,0.740415, maf-5-some-pop,maf-5-all-pops 621 chr1 4750118 4750119 rs16839468 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 321.000000,4687.000000, 0.064097,0.935903, maf-5-some-pop 621 chr1 4750266 4750267 rs12402150 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF, 2 A,C, 566.000000,4442.000000, 0.113019,0.886981, maf-5-some-pop,maf-5-all-pops 621 chr1 4750358 4750359 rs114141664 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 621 chr1 4750392 4750393 rs72857959 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 4912.000000,96.000000, 0.980831,0.019169, maf-5-some-pop,maf-5-all-pops 621 chr1 4750554 4750555 rs115857272 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,T, 4923.000000,85.000000, 0.983027,0.016973, 621 chr1 4750589 4750590 rs114235078 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,MPI_MOLGEN,SSMP, 2 A,C, 233.000000,4775.000000, 0.046526,0.953474, maf-5-some-pop,maf-5-all-pops 621 chr1 4751029 4751030 rs242052 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4371.000000,637.000000, 0.872804,0.127196, maf-5-some-pop 621 chr1 4751240 4751241 rs72857961 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 621 chr1 4751549 4751550 rs114303740 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 154.000000,4854.000000, 0.030751,0.969249, 621 chr1 4751763 4751764 rs67665173 0 + C C A/C genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 665.000000,4343.000000, 0.132788,0.867212, maf-5-some-pop,maf-5-all-pops 621 chr1 4751877 4751878 rs242053 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,KWOK,PERLEGEN,SC_JCM,SC_SNP, 2 C,T, 4863.000000,145.000000, 0.971046,0.028954, maf-5-some-pop 621 chr1 4751900 4751901 rs114983999 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, 621 chr1 4751994 4751995 rs16839469 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 575.000000,4433.000000, 0.114816,0.885184, maf-5-some-pop 621 chr1 4752277 4752278 rs171380 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4146.000000,862.000000, 0.827875,0.172125, maf-5-some-pop 621 chr1 4752448 4752449 rs113919697 0 + C C C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4638.000000,370.000000, 0.926118,0.073882, maf-5-some-pop,maf-5-all-pops 621 chr1 4752692 4752693 rs11801711 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA, 2 C,T, 4899.000000,109.000000, 0.978235,0.021765, maf-5-some-pop,maf-5-all-pops 621 chr1 4752709 4752710 rs17344987 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 C,T, 4828.000000,180.000000, 0.964058,0.035942, 621 chr1 4752793 4752794 rs11801722 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV, 2 C,G, 4894.000000,114.000000, 0.977236,0.022764, maf-5-some-pop,maf-5-all-pops 621 chr1 4752937 4752938 rs79842036 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4905.000000,103.000000, 0.979433,0.020567, maf-5-some-pop,maf-5-all-pops 621 chr1 4752959 4752960 rs4654587 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 A,G, 331.000000,4677.000000, 0.066094,0.933906, maf-5-some-pop 621 chr1 4753234 4753235 rs112673996 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4869.000000,139.000000, 0.972244,0.027756, maf-5-some-pop,maf-5-all-pops 621 chr1 4753287 4753288 rs75056847 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,MPI_MOLGEN, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, 621 chr1 4753344 4753345 rs557028981 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 -,G, 135.000000,4873.000000, 0.026957,0.973043, 621 chr1 4753447 4753448 rs112084702 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,COMPLETE_GENOMICS, 2 C,T, 4893.000000,115.000000, 0.977037,0.022963, maf-5-some-pop,maf-5-all-pops 621 chr1 4753544 4753545 rs148778206 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 621 chr1 4753612 4753613 rs142396388 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 194.000000,4814.000000, 0.038738,0.961262, 621 chr1 4753788 4753789 rs145399909 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,WARNICH_LAB, 2 G,T, 121.000000,4887.000000, 0.024161,0.975839, 621 chr1 4754056 4754057 rs7525374 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2179.000000,2829.000000, 0.435104,0.564896, maf-5-some-pop,maf-5-all-pops 621 chr1 4754239 4754239 rs145693833 0 + - - -/CAGTCTG genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,CAGTCTG, 2807.000000,2201.000000, 0.560503,0.439497, 621 chr1 4754316 4754317 rs149094132 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 94.000000,4914.000000, 0.018770,0.981230, 621 chr1 4754650 4754651 rs17349117 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP, 2 A,G, 4812.000000,196.000000, 0.960863,0.039137, 621 chr1 4755054 4755055 rs113266872 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 123.000000,4885.000000, 0.024561,0.975439, maf-5-some-pop,maf-5-all-pops 621 chr1 4755070 4755071 rs9970681 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 352.000000,4656.000000, 0.070288,0.929712, maf-5-some-pop 621 chr1 4755225 4755226 rs9970616 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 4533.000000,475.000000, 0.905152,0.094848, maf-5-some-pop 621 chr1 4755315 4755316 rs9970525 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 4656.000000,352.000000, 0.929712,0.070288, maf-5-some-pop 621 chr1 4755352 4755353 rs113252234 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 124.000000,4884.000000, 0.024760,0.975240, maf-5-some-pop,maf-5-all-pops 621 chr1 4755411 4755412 rs4654457 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP, 2 C,T, 4658.000000,350.000000, 0.930112,0.069888, maf-5-some-pop 621 chr1 4755500 4755501 rs60796722 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 479.000000,4529.000000, 0.095647,0.904353, maf-5-some-pop 621 chr1 4755534 4755535 rs113567234 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4888.000000,120.000000, 0.976038,0.023962, maf-5-some-pop,maf-5-all-pops 621 chr1 4755720 4755721 rs66989617 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 3957.000000,1051.000000, 0.790136,0.209864, maf-5-some-pop,maf-5-all-pops 621 chr1 4755769 4755770 rs4654588 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 370.000000,4638.000000, 0.073882,0.926118, maf-5-some-pop 621 chr1 4756017 4756017 rs58828516 0 + - - -/G genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BL,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 4648.000000,360.000000, 0.928115,0.071885, 621 chr1 4756236 4756237 rs5772179 0 + G G -/G genomic deletion unknown 0 0 intron exact 1 8 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 649.000000,4359.000000, 0.129593,0.870407, 621 chr1 4756275 4756276 rs7518469 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop 621 chr1 4756433 4756434 rs113043503 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 167.000000,4841.000000, 0.033347,0.966653, maf-5-some-pop,maf-5-all-pops 621 chr1 4756467 4756468 rs10915588 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2635.000000,2373.000000, 0.526158,0.473842, maf-5-some-pop,maf-5-all-pops 621 chr1 4756664 4756665 rs79829446 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 C,G, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop 621 chr1 4756865 4756866 rs114781958 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 91.000000,4917.000000, 0.018171,0.981829, 621 chr1 4757030 4757031 rs115326613 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 197.000000,4811.000000, 0.039337,0.960663, maf-5-some-pop,maf-5-all-pops 621 chr1 4757083 4757087 rs74534688 0 + GTGT GTGT -/GTGT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,GMI, 2 -,GTGT, 443.000000,4565.000000, 0.088459,0.911542, 621 chr1 4757197 4757198 rs72638803 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 378.000000,4630.000000, 0.075479,0.924521, maf-5-some-pop,maf-5-all-pops 621 chr1 4757231 4757232 rs7549821 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,JMKIDD_LAB,KRIBB_YJKIM,WI_SSAHASNP, 2 C,G, 80.000000,4928.000000, 0.015974,0.984026, maf-5-some-pop 621 chr1 4757331 4757332 rs115910399 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 199.000000,4809.000000, 0.039736,0.960264, maf-5-some-pop,maf-5-all-pops 621 chr1 4757349 4757350 rs113422680 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 100.000000,4908.000000, 0.019968,0.980032, 621 chr1 4757523 4757524 rs72638804 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,EVA-GONL, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop,maf-5-all-pops 621 chr1 4757548 4757549 rs72638805 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB, 2 A,G, 4847.000000,161.000000, 0.967851,0.032149, 621 chr1 4757576 4757577 rs113145806 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4807.000000,201.000000, 0.959864,0.040136, maf-5-some-pop,maf-5-all-pops 621 chr1 4757641 4757642 rs115861203 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 621 chr1 4757719 4757720 rs112782119 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 200.000000,4808.000000, 0.039936,0.960064, maf-5-some-pop,maf-5-all-pops 621 chr1 4757875 4757876 rs6669203 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1838.000000,3170.000000, 0.367013,0.632987, maf-5-some-pop,maf-5-all-pops 621 chr1 4758168 4758169 rs2071997 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4518.000000,490.000000, 0.902156,0.097843, maf-5-some-pop 621 chr1 4758320 4758321 rs6661745 0 + C C C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3892.000000,1116.000000, 0.777157,0.222843, maf-5-some-pop,maf-5-all-pops 621 chr1 4758326 4758327 rs12121882 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3979.000000,1029.000000, 0.794529,0.205471, maf-5-some-pop,maf-5-all-pops 621 chr1 4758438 4758439 rs11800746 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,KRIBB_YJKIM, 2 A,G, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop 621 chr1 4758593 4758594 rs6664475 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4645.000000,363.000000, 0.927516,0.072484, maf-5-some-pop,maf-5-all-pops 621 chr1 4759004 4759005 rs72638810 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop,maf-5-all-pops 621 chr1 4759030 4759031 rs146731059 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 621 chr1 4759049 4759050 rs2071998 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BGI,EVA-GONL,GMI,HGBASE,ILLUMINA,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 4483.000000,525.000000, 0.895168,0.104832, maf-5-some-pop,maf-5-all-pops 621 chr1 4759160 4759161 rs72638812 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 365.000000,4643.000000, 0.072883,0.927117, maf-5-some-pop,maf-5-all-pops 621 chr1 4759317 4759318 rs242054 0 + A A A/G genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 323.000000,4685.000000, 0.064497,0.935503, maf-5-some-pop 621 chr1 4759343 4759344 rs72638813 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,G, 4651.000000,357.000000, 0.928714,0.071286, maf-5-some-pop,maf-5-all-pops 621 chr1 4759421 4759422 rs114097947 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 621 chr1 4759627 4759628 rs78451304 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4828.000000,180.000000, 0.964058,0.035942, 621 chr1 4759704 4759705 rs72638815 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop 621 chr1 4759734 4759735 rs72638816 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB, 2 C,T, 4849.000000,159.000000, 0.968251,0.031749, maf-5-some-pop,maf-5-all-pops 621 chr1 4759829 4759830 rs76235097 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4819.000000,189.000000, 0.962260,0.037740, 621 chr1 4760239 4760240 rs72638817 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4642.000000,366.000000, 0.926917,0.073083, maf-5-some-pop,maf-5-all-pops 621 chr1 4760311 4760312 rs72638818 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,C, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop,maf-5-all-pops 621 chr1 4760315 4760316 rs61765031 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3599.000000,1409.000000, 0.718650,0.281350, maf-5-some-pop,maf-5-all-pops 621 chr1 4760391 4760392 rs72638819 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 621 chr1 4760411 4760412 rs113855348 0 + T T A/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 322.000000,4686.000000, 0.064297,0.935703, maf-5-some-pop,maf-5-all-pops 621 chr1 4760573 4760574 rs79317565 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 195.000000,4813.000000, 0.038938,0.961062, 621 chr1 4760708 4760709 rs72638820 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB, 2 C,T, 4845.000000,163.000000, 0.967452,0.032548, maf-5-some-pop,maf-5-all-pops 621 chr1 4761115 4761116 rs75084201 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, 621 chr1 4761250 4761251 rs75831216 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop 621 chr1 4761318 4761319 rs111250941 0 + A A A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4653.000000,355.000000, 0.929113,0.070887, maf-5-some-pop 621 chr1 4761422 4761423 rs72857974 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,G, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 621 chr1 4762455 4762456 rs115850089 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop,maf-5-all-pops 621 chr1 4762511 4762512 rs114437750 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 621 chr1 4762706 4762707 rs115892659 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 621 chr1 4763188 4763189 rs6686733 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP, 2 C,T, 932.000000,4076.000000, 0.186102,0.813898, maf-5-some-pop,maf-5-all-pops 621 chr1 4763206 4763207 rs75270130 0 + A A A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 4809.000000,199.000000, 0.960264,0.039736, 621 chr1 4763341 4763342 rs114788727 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 621 chr1 4763453 4763454 rs72638823 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 166.000000,4842.000000, 0.033147,0.966853, maf-5-some-pop,maf-5-all-pops 621 chr1 4763551 4763552 rs16839496 0 + T T G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 G,T, 220.000000,4788.000000, 0.043930,0.956070, 621 chr1 4763755 4763756 rs75729099 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 207.000000,4801.000000, 0.041334,0.958666, 621 chr1 4763767 4763768 rs75460281 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 199.000000,4809.000000, 0.039736,0.960264, 621 chr1 4764108 4764109 rs114797517 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4802.000000,206.000000, 0.958866,0.041134, 621 chr1 4764154 4764155 rs4654589 0 + A A A/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 4383.000000,625.000000, 0.875200,0.124800, maf-5-some-pop 621 chr1 4764217 4764217 rs34590919 0 + - - -/T genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,ABI,BILGI_BIOE,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 3101.000000,1907.000000, 0.619209,0.380791, 621 chr1 4764233 4764234 rs146285803 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 206.000000,4802.000000, 0.041134,0.958866, 621 chr1 4764421 4764422 rs182852317 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 621 chr1 4764437 4764438 rs186496845 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4925.000000,83.000000, 0.983427,0.016573, 621 chr1 4764481 4764482 rs61765032 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,GMI, 2 C,T, 4456.000000,552.000000, 0.889776,0.110224, 621 chr1 4764605 4764606 rs61765033 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 C,T, 769.000000,4239.000000, 0.153554,0.846446, 621 chr1 4765266 4765267 rs145004669 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 C,G, 4802.000000,206.000000, 0.958866,0.041134, 621 chr1 4765380 4765381 rs61765034 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,SSMP,TISHKOFF, 2 A,G, 562.000000,4446.000000, 0.112220,0.887780, 621 chr1 4765389 4765390 rs12131565 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,G, 4248.000000,760.000000, 0.848243,0.151757, 621 chr1 4765503 4765504 rs72638824 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BCM-HGSC-SUB,EVA-GONL, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, maf-5-some-pop,maf-5-all-pops 621 chr1 4765580 4765581 rs4654590 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3908.000000,1100.000000, 0.780351,0.219649, maf-5-some-pop,maf-5-all-pops 621 chr1 4765587 4765588 rs10915590 0 + T T C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1731.000000,3277.000000, 0.345647,0.654353, maf-5-some-pop,maf-5-all-pops 621 chr1 4765902 4765903 rs115590088 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 4926.000000,82.000000, 0.983626,0.016374, 621 chr1 4765954 4765955 rs10915592 0 + T T C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 957.000000,4051.000000, 0.191094,0.808906, maf-5-some-pop,maf-5-all-pops 621 chr1 4766016 4766017 rs76134041 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4802.000000,206.000000, 0.958866,0.041134, 621 chr1 4766115 4766116 rs115232989 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 54.000000,4954.000000, 0.010783,0.989217, 621 chr1 4766171 4766172 rs115711588 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 621 chr1 4766651 4766652 rs76980558 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,GMI,JMKIDD_LAB, 2 C,T, 4444.000000,564.000000, 0.887380,0.112620, maf-5-some-pop,maf-5-all-pops 621 chr1 4766738 4766739 rs35923204 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4421.000000,587.000000, 0.882788,0.117212, maf-5-some-pop 621 chr1 4766889 4766890 rs58348176 0 + C C C/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4791.000000,217.000000, 0.956669,0.043331, 621 chr1 4766917 4766918 rs11581660 0 + A A A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3868.000000,1140.000000, 0.772364,0.227636, maf-5-some-pop,maf-5-all-pops 621 chr1 4767024 4767025 rs57979322 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 206.000000,4802.000000, 0.041134,0.958866, 621 chr1 4767161 4767162 rs76630184 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 206.000000,4802.000000, 0.041134,0.958866, 621 chr1 4767306 4767307 rs114218836 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 C,T, 4927.000000,81.000000, 0.983826,0.016174, maf-5-some-pop,maf-5-all-pops 621 chr1 4767395 4767396 rs75955753 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 206.000000,4802.000000, 0.041134,0.958866, 621 chr1 4767562 4767563 rs72638828 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4508.000000,500.000000, 0.900160,0.099840, maf-5-some-pop,maf-5-all-pops 621 chr1 4767752 4767753 rs2101196 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 2101.000000,2907.000000, 0.419529,0.580471, maf-5-some-pop 621 chr1 4767849 4767850 rs74051943 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF, 2 A,G, 4927.000000,81.000000, 0.983826,0.016174, 621 chr1 4767956 4767957 rs77560384 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 206.000000,4802.000000, 0.041134,0.958866, 621 chr1 4767975 4767976 rs66885749 0 + T T C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 756.000000,4252.000000, 0.150958,0.849042, maf-5-some-pop,maf-5-all-pops 621 chr1 4768017 4768018 rs2411893 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 832.000000,4176.000000, 0.166134,0.833866, maf-5-some-pop,maf-5-all-pops 621 chr1 4768021 4768022 rs2086718 0 + C C C/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4470.000000,538.000000, 0.892572,0.107428, maf-5-some-pop,maf-5-all-pops 621 chr1 4768114 4768115 rs139582565 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4810.000000,198.000000, 0.960463,0.039537, 621 chr1 4768333 4768334 rs145080776 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 198.000000,4810.000000, 0.039537,0.960463, 621 chr1 4768366 4768367 rs147566823 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4803.000000,205.000000, 0.959065,0.040934, 621 chr1 4768430 4768431 rs6670802 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,SSMP,TISHKOFF, 2 A,G, 998.000000,4010.000000, 0.199281,0.800719, maf-5-some-pop,maf-5-all-pops 621 chr1 4768495 4768496 rs114227328 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4803.000000,205.000000, 0.959065,0.040934, 621 chr1 4768539 4768540 rs6688423 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 2910.000000,2098.000000, 0.581070,0.418930, maf-5-some-pop,maf-5-all-pops 621 chr1 4768607 4768608 rs114038482 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4801.000000,207.000000, 0.958666,0.041334, 621 chr1 4768705 4768706 rs61765036 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 645.000000,4363.000000, 0.128794,0.871206, maf-5-some-pop,maf-5-all-pops 621 chr1 4768882 4768885 rs144675465 0 + CCA CCA -/CCA genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CCA, 623.000000,4385.000000, 0.124401,0.875599, 621 chr1 4769330 4769331 rs182706427 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 84.000000,4924.000000, 0.016773,0.983227, 621 chr1 4769401 4769402 rs79910972 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,SSMP,TISHKOFF, 2 A,G, 4801.000000,207.000000, 0.958666,0.041334, 621 chr1 4769643 4769644 rs72638833 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 165.000000,4843.000000, 0.032947,0.967053, 621 chr1 4769824 4769825 rs4654593 0 + G G G/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 G,T, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop 621 chr1 4770064 4770065 rs12760917 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2252.000000,2756.000000, 0.449681,0.550319, maf-5-some-pop,maf-5-all-pops 621 chr1 4770229 4770229 rs34058244 0 + - - -/AC genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,ABI,BILGI_BIOE,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,TISHKOFF, 2 -,AC, 2565.000000,2443.000000, 0.512181,0.487819, 621 chr1 4770237 4770238 rs533367005 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4725.000000,283.000000, 0.943490,0.056510, 621 chr1 4770356 4770357 rs75270388 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4792.000000,216.000000, 0.956869,0.043131, 621 chr1 4770445 4770446 rs4654594 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2921.000000,2087.000000, 0.583267,0.416733, maf-5-some-pop,maf-5-all-pops 621 chr1 4770491 4770492 rs61765037 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4684.000000,324.000000, 0.935304,0.064696, maf-5-some-pop 621 chr1 4770523 4770527 rs144543089 0 + CACT CACT -/CACT genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,GMI,LUNTER,PJP,SSMP, 2 -,CACT, 2142.000000,2866.000000, 0.427716,0.572284, 621 chr1 4770767 4770768 rs7532197 0 + G G G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,WI_SSAHASNP, 2 G,T, 4876.000000,132.000000, 0.973642,0.026358, maf-5-some-pop,maf-5-all-pops 621 chr1 4770903 4770904 rs1483197 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2456.000000,2552.000000, 0.490415,0.509585, maf-5-some-pop,maf-5-all-pops 621 chr1 4770958 4770959 rs149344061 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4943.000000,65.000000, 0.987021,0.012979, 621 chr1 4770972 4770973 rs242055 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 516.000000,4492.000000, 0.103035,0.896965, maf-5-some-pop 621 chr1 4771040 4771041 rs7541321 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,WI_SSAHASNP, 2 C,T, 4872.000000,136.000000, 0.972844,0.027157, maf-5-some-pop,maf-5-all-pops 621 chr1 4771056 4771057 rs72857983 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 262.000000,4746.000000, 0.052316,0.947684, maf-5-some-pop,maf-5-all-pops 621 chr1 4771411 4771412 rs76345658 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 345.000000,4663.000000, 0.068890,0.931110, maf-5-some-pop 621 chr1 4771453 4771454 rs115333233 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 621 chr1 4771552 4771553 rs147405463 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 153.000000,4855.000000, 0.030551,0.969449, 621 chr1 4771664 4771665 rs989309 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2798.000000,2210.000000, 0.558706,0.441294, maf-5-some-pop,maf-5-all-pops 621 chr1 4771694 4771695 rs989310 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 2525.000000,2483.000000, 0.504193,0.495807, maf-5-some-pop,maf-5-all-pops 621 chr1 4771875 4771876 rs112841138 0 + C C A/C genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB, 2 A,C, 107.000000,4901.000000, 0.021366,0.978634, maf-5-some-pop,maf-5-all-pops 621 chr1 4772052 4772053 rs1061968 0 + T T C/T genomic single unknown 0 0 coding-synon exact 1 17 1000GENOMES,APPLERA_GI,BCM-HGSC-SUB,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,LEE,NHLBI-ESP,SEATTLESEQ,SSMP, 2 C,T, 2638.000000,2370.000000, 0.526757,0.473243, maf-5-some-pop,maf-5-all-pops 621 chr1 4772461 4772462 rs139622182 0 + A A A/T genomic single unknown 0 0 missense exact 1 4 1000GENOMES,EXOME_CHIP,ILLUMINA,NHLBI-ESP, 2 A,T, 4956.000000,52.000000, 0.989617,0.010383, 621 chr1 4772534 4772535 rs76065876 0 + G G A/G genomic single unknown 0 0 missense exact 1 6 1000GENOMES,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,SEATTLESEQ, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 621 chr1 4772715 4772716 rs78250331 0 + C C C/T genomic single unknown 0 0 coding-synon exact 1 9 1000GENOMES,CLINSEQ_SNP,GMI,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, 2 C,T, 4709.000000,299.000000, 0.940296,0.059705, 621 chr1 4773148 4773149 rs6426433 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,TISHKOFF,WI_SSAHASNP, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, maf-5-some-pop 621 chr1 4773323 4773324 rs114139724 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,TISHKOFF, 2 C,T, 4949.000000,59.000000, 0.988219,0.011781, 621 chr1 4773371 4773372 rs56401224 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 3565.000000,1443.000000, 0.711861,0.288139, maf-5-some-pop,maf-5-all-pops 621 chr1 4773682 4773683 rs3766954 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4121.000000,887.000000, 0.822883,0.177117, maf-5-some-pop 621 chr1 4773851 4773852 rs242057 0 + G G A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 4342.000000,666.000000, 0.867013,0.132987, maf-5-some-pop 621 chr1 4773952 4773953 rs113906061 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 110.000000,4898.000000, 0.021965,0.978035, 621 chr1 4774235 4774236 rs67730516 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 537.000000,4471.000000, 0.107228,0.892772, maf-5-some-pop,maf-5-all-pops 621 chr1 4774348 4774349 rs3820249 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 G,T, 4730.000000,278.000000, 0.944489,0.055511, maf-5-some-pop 621 chr1 4774437 4774438 rs242058 0 + T T C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4430.000000,578.000000, 0.884585,0.115415, maf-5-some-pop 621 chr1 4774712 4774713 rs112228676 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4590.000000,418.000000, 0.916534,0.083467, maf-5-some-pop 621 chr1 4775482 4775483 rs7556667 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4590.000000,418.000000, 0.916534,0.083467, maf-5-some-pop 621 chr1 4775495 4775496 rs7547774 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 517.000000,4491.000000, 0.103235,0.896765, maf-5-some-pop 621 chr1 4775549 4775550 rs3766956 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4158.000000,850.000000, 0.830272,0.169728, 621 chr1 4775567 4775568 rs112930097 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,JMKIDD_LAB,TISHKOFF, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, 621 chr1 4775598 4775599 rs7516128 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4444.000000,564.000000, 0.887380,0.112620, 621 chr1 4775740 4775741 rs115746909 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, maf-5-some-pop,maf-5-all-pops 621 chr1 4775827 4775828 rs3766957 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 873.000000,4135.000000, 0.174321,0.825679, maf-5-some-pop 621 chr1 4776110 4776111 rs12567190 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 589.000000,4419.000000, 0.117612,0.882388, maf-5-some-pop 621 chr1 4776284 4776285 rs4654595 0 + A A A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 492.000000,4516.000000, 0.098243,0.901757, maf-5-some-pop 621 chr1 4776512 4776513 rs115474483 0 + G G C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 191.000000,4817.000000, 0.038139,0.961861, 621 chr1 4776541 4776542 rs4654596 0 + G G A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4328.000000,680.000000, 0.864217,0.135783, maf-5-some-pop 621 chr1 4776794 4776797 rs145717010 0 + GAT GAT -/GAT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,GAT, 55.000000,4953.000000, 0.010982,0.989018, 621 chr1 4776973 4776974 rs3753696 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 281.000000,4727.000000, 0.056110,0.943890, maf-5-some-pop 621 chr1 4777424 4777425 rs3753697 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4679.000000,329.000000, 0.934305,0.065695, maf-5-some-pop 621 chr1 4778063 4778064 rs115558374 0 + A A A/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,T, 4933.000000,75.000000, 0.985024,0.014976, maf-5-some-pop,maf-5-all-pops 621 chr1 4778169 4778170 rs71640943 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 621 chr1 4778231 4778232 rs3766959 0 + C C C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2353.000000,2655.000000, 0.469848,0.530152, maf-5-some-pop,maf-5-all-pops 621 chr1 4778489 4778490 rs11582951 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 188.000000,4820.000000, 0.037540,0.962460, 621 chr1 4778857 4778858 rs12239770 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 854.000000,4154.000000, 0.170527,0.829473, maf-5-some-pop 621 chr1 4779287 4779288 rs242040 0 + A A A/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4470.000000,538.000000, 0.892572,0.107428, maf-5-some-pop 621 chr1 4779655 4779656 rs72857995 0 + G G C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1088.000000,3920.000000, 0.217252,0.782748, maf-5-some-pop 621 chr1 4779696 4779697 rs242041 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3498.000000,1510.000000, 0.698482,0.301518, maf-5-some-pop 621 chr1 4779884 4779885 rs75762666 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 621 chr1 4779954 4779955 rs3766961 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 4723.000000,285.000000, 0.943091,0.056909, maf-5-some-pop,maf-5-all-pops 621 chr1 4780249 4780250 rs114881261 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 621 chr1 4780749 4780750 rs3820250 0 + G G G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, 2 G,T, 4102.000000,906.000000, 0.819089,0.180911, maf-5-some-pop 621 chr1 4781095 4781096 rs3753699 0 + C C C/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4552.000000,456.000000, 0.908946,0.091054, maf-5-some-pop 621 chr1 4781150 4781151 rs3820251 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,CSHL-HAPMAP,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4378.000000,630.000000, 0.874201,0.125799, maf-5-some-pop,maf-5-all-pops 621 chr1 4781314 4781315 rs112079042 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 106.000000,4902.000000, 0.021166,0.978834, 621 chr1 4781921 4781922 rs12135881 0 + C C C/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP, 2 C,G, 4675.000000,333.000000, 0.933506,0.066494, maf-5-some-pop 621 chr1 4782240 4782241 rs79522089 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 578.000000,4430.000000, 0.115415,0.884585, maf-5-some-pop,maf-5-all-pops 621 chr1 4782485 4782486 rs138988514 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 621 chr1 4782640 4782641 rs12736144 0 + G G C/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SSAHASNP, 2 C,G, 54.000000,4954.000000, 0.010783,0.989217, 621 chr1 4782670 4782671 rs113709488 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, maf-5-some-pop,maf-5-all-pops 621 chr1 4782692 4782693 rs34825878 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4532.000000,476.000000, 0.904952,0.095048, maf-5-some-pop 621 chr1 4783027 4783028 rs76096164 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4904.000000,104.000000, 0.979233,0.020767, maf-5-some-pop,maf-5-all-pops 621 chr1 4783100 4783101 rs35734830 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4557.000000,451.000000, 0.909944,0.090056, maf-5-some-pop 621 chr1 4783141 4783142 rs12566272 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 923.000000,4085.000000, 0.184305,0.815695, maf-5-some-pop,maf-5-all-pops 621 chr1 4783206 4783207 rs115449099 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, maf-5-some-pop,maf-5-all-pops 621 chr1 4783465 4783466 rs78520929 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4426.000000,582.000000, 0.883786,0.116214, maf-5-some-pop,maf-5-all-pops 621 chr1 4783527 4783528 rs116548904 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 621 chr1 4783619 4783620 rs72858000 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF, 2 C,T, 4874.000000,134.000000, 0.973243,0.026757, maf-5-some-pop,maf-5-all-pops 621 chr1 4783696 4783697 rs112524140 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 65.000000,4943.000000, 0.012979,0.987021, 621 chr1 4784555 4784556 rs3820252 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4150.000000,858.000000, 0.828674,0.171326, maf-5-some-pop 621 chr1 4784761 4784762 rs561825056 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4079.000000,929.000000, 0.814497,0.185503, 621 chr1 4784849 4784850 rs4554693 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF, 2 C,T, 4044.000000,964.000000, 0.807508,0.192492, maf-5-some-pop 621 chr1 4784883 4784884 rs3820253 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 A,G, 912.000000,4096.000000, 0.182109,0.817891, maf-5-some-pop 621 chr1 4784981 4784982 rs113939811 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 G,T, 4906.000000,102.000000, 0.979633,0.020367, maf-5-some-pop,maf-5-all-pops 621 chr1 4785193 4785194 rs144681785 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 621 chr1 4785386 4785387 rs147881658 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 621 chr1 4785448 4785449 rs16839524 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4699.000000,309.000000, 0.938299,0.061701, maf-5-some-pop 621 chr1 4785665 4785666 rs74051953 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 104.000000,4904.000000, 0.020767,0.979233, maf-5-some-pop,maf-5-all-pops 621 chr1 4786176 4786177 rs71640945 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4557.000000,451.000000, 0.909944,0.090056, maf-5-some-pop 621 chr1 4787078 4787079 rs79551339 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4417.000000,591.000000, 0.881989,0.118011, maf-5-some-pop,maf-5-all-pops 621 chr1 4787118 4787119 rs242044 0 + A A A/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1581.000000,3427.000000, 0.315695,0.684305, maf-5-some-pop 621 chr1 4787133 4787134 rs116062165 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 621 chr1 4787157 4787158 rs76848527 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 112.000000,4896.000000, 0.022364,0.977636, maf-5-some-pop,maf-5-all-pops 621 chr1 4787315 4787316 rs242045 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3492.000000,1516.000000, 0.697284,0.302716, maf-5-some-pop 621 chr1 4787413 4787414 rs16839525 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,EVA-GONL,KRIBB_YJKIM,PERLEGEN, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 621 chr1 4788007 4788008 rs242047 0 + A A A/C genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KWOK,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3760.000000,1248.000000, 0.750799,0.249201, maf-5-some-pop,maf-5-all-pops 621 chr1 4788885 4788886 rs242048 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1456.000000,3552.000000, 0.290735,0.709265, maf-5-some-pop 621 chr1 4788938 4788939 rs72859607 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 C,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 621 chr1 4789028 4789029 rs242049 0 + T T G/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3482.000000,1526.000000, 0.695288,0.304712, maf-5-some-pop 621 chr1 4789584 4789585 rs732801 0 + G G A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BGI,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 1135.000000,3873.000000, 0.226637,0.773363, maf-5-some-pop,maf-5-all-pops 621 chr1 4789973 4789974 rs3830167 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,YUSUKE, 2 C,T, 4393.000000,615.000000, 0.877196,0.122804, maf-5-some-pop,maf-5-all-pops 621 chr1 4790090 4790091 rs150365468 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 621 chr1 4790987 4790988 rs242051 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 4539.000000,469.000000, 0.906350,0.093650, maf-5-some-pop 621 chr1 4791058 4791059 rs78449074 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop,maf-5-all-pops 621 chr1 4791288 4791289 rs144700759 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 621 chr1 4792234 4792235 rs116558906 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4932.000000,76.000000, 0.984824,0.015176, 621 chr1 4792653 4792654 rs4448488 0 + T T G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,AFFY,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,TISHKOFF, 2 G,T, 77.000000,4931.000000, 0.015375,0.984625, maf-5-some-pop 621 chr1 4793181 4793182 rs143196258 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,G, 4947.000000,61.000000, 0.987819,0.012180, 621 chr1 4793689 4793690 rs11588111 0 + G G G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 4833.000000,175.000000, 0.965056,0.034944, 621 chr1 4794038 4794039 rs61765039 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 870.000000,4138.000000, 0.173722,0.826278, maf-5-some-pop,maf-5-all-pops 621 chr1 4794237 4794238 rs114657858 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,SSMP, 2 A,G, 172.000000,4836.000000, 0.034345,0.965655, 621 chr1 4794285 4794286 rs61765041 0 + C C A/C genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 1315.000000,3693.000000, 0.262580,0.737420, maf-5-some-pop,maf-5-all-pops 621 chr1 4794864 4794865 rs12095258 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3703.000000,1305.000000, 0.739417,0.260583, maf-5-some-pop,maf-5-all-pops 621 chr1 4794866 4794867 rs115138545 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 136.000000,4872.000000, 0.027157,0.972844, 621 chr1 4794911 4794912 rs116230643 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4824.000000,184.000000, 0.963259,0.036741, 621 chr1 4795131 4795132 rs10915594 0 + A A A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2987.000000,2021.000000, 0.596446,0.403554, maf-5-some-pop,maf-5-all-pops 621 chr1 4795190 4795191 rs140207331 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 621 chr1 4795193 4795194 rs150315127 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 621 chr1 4795413 4795414 rs446529 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,WUGSC_SSAHASNP,YUSUKE, 2 C,T, 2514.000000,2494.000000, 0.501997,0.498003, maf-5-some-pop,maf-5-all-pops 621 chr1 4795722 4795727 rs70955796 0 + GTGAG GTGAG -/GTGAG genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BILGI_BIOE,BUSHMAN,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,GTGAG, 2685.000000,2323.000000, 0.536142,0.463858, 621 chr1 4795746 4795747 rs486207 0 + T T G/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BL,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 G,T, 2684.000000,2324.000000, 0.535942,0.464058, 621 chr1 4795777 4795778 rs432330 0 + T T A/T genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2689.000000,2319.000000, 0.536941,0.463059, maf-5-some-pop,maf-5-all-pops 621 chr1 4795793 4795794 rs449261 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1871.000000,3137.000000, 0.373602,0.626398, maf-5-some-pop,maf-5-all-pops 621 chr1 4795815 4795816 rs435239 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3885.000000,1123.000000, 0.775759,0.224241, maf-5-some-pop,maf-5-all-pops 621 chr1 4795873 4795874 rs416953 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2882.000000,2126.000000, 0.575479,0.424521, maf-5-some-pop,maf-5-all-pops 621 chr1 4796207 4796208 rs143259539 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4823.000000,185.000000, 0.963059,0.036941, 621 chr1 4796222 4796223 rs383650 0 + C C C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,G, 2551.000000,2457.000000, 0.509385,0.490615, maf-5-some-pop,maf-5-all-pops 621 chr1 4796295 4796296 rs436132 0 + G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 3420.000000,1588.000000, 0.682907,0.317093, maf-5-some-pop,maf-5-all-pops 621 chr1 4796416 4796417 rs12566571 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4192.000000,816.000000, 0.837061,0.162939, maf-5-some-pop,maf-5-all-pops 621 chr1 4796424 4796425 rs77789237 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 183.000000,4825.000000, 0.036541,0.963458, 621 chr1 4796565 4796566 rs148128832 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 186.000000,4822.000000, 0.037141,0.962859, 621 chr1 4796571 4796572 rs141899425 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, 621 chr1 4797008 4797009 rs4654597 0 + G G G/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,WI_SSAHASNP, 2 G,T, 4447.000000,561.000000, 0.887979,0.112021, maf-5-some-pop,maf-5-all-pops 621 chr1 4797497 4797498 rs544738 0 + C C A/C genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3854.000000,1154.000000, 0.769569,0.230431, maf-5-some-pop,maf-5-all-pops 621 chr1 4797565 4797566 rs36028110 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, maf-5-some-pop,maf-5-all-pops 621 chr1 4797757 4797758 rs445060 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1181.000000,3827.000000, 0.235823,0.764177, maf-5-some-pop,maf-5-all-pops 621 chr1 4797847 4797848 rs61765058 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 C,G, 65.000000,4943.000000, 0.012979,0.987021, 621 chr1 4797902 4797903 rs76988149 0 + C C A/C genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 424.000000,4584.000000, 0.084665,0.915335, maf-5-some-pop,maf-5-all-pops 621 chr1 4798297 4798298 rs12136473 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4584.000000,424.000000, 0.915335,0.084665, maf-5-some-pop 621 chr1 4798299 4798300 rs61765059 0 + G G G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 G,T, 4931.000000,77.000000, 0.984625,0.015375, 621 chr1 4798438 4798439 rs12138687 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4392.000000,616.000000, 0.876997,0.123003, maf-5-some-pop 621 chr1 4798535 4798536 rs76013244 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 621 chr1 4798574 4798575 rs113934541 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4542.000000,466.000000, 0.906949,0.093051, maf-5-some-pop 621 chr1 4798575 4798576 rs59122903 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, 621 chr1 4798852 4798853 rs578528 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3622.000000,1386.000000, 0.723243,0.276757, maf-5-some-pop,maf-5-all-pops 621 chr1 4799109 4799110 rs75801608 0 + G G A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 661.000000,4347.000000, 0.131989,0.868011, maf-5-some-pop 621 chr1 4799199 4799200 rs3753702 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4369.000000,639.000000, 0.872404,0.127596, maf-5-some-pop 621 chr1 4799269 4799270 rs449181 0 + G G A/G genomic single unknown 0 0 intron exact 1 23 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3818.000000,1190.000000, 0.762380,0.237620, maf-5-some-pop 621 chr1 4799308 4799309 rs61766960 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4286.000000,722.000000, 0.855831,0.144169, maf-5-some-pop 621 chr1 4799495 4799496 rs3753704 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,YUSUKE, 2 C,G, 4816.000000,192.000000, 0.961661,0.038339, 621 chr1 4800120 4800121 rs72638877 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4562.000000,446.000000, 0.910942,0.089057, maf-5-some-pop 621 chr1 4800156 4800157 rs61766961 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 550.000000,4458.000000, 0.109824,0.890176, maf-5-some-pop,maf-5-all-pops 621 chr1 4800428 4800429 rs13376290 0 + T T G/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,SSMP,WUGSC_SSAHASNP, 2 G,T, 2247.000000,2761.000000, 0.448682,0.551318, 621 chr1 4800685 4800686 rs190034171 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4930.000000,78.000000, 0.984425,0.015575, 621 chr1 4801020 4801021 rs529853 0 + G G C/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 852.000000,4156.000000, 0.170128,0.829872, maf-5-some-pop,maf-5-all-pops 621 chr1 4801031 4801032 rs74404323 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4384.000000,624.000000, 0.875399,0.124601, maf-5-some-pop 621 chr1 4801280 4801281 rs381339 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1185.000000,3823.000000, 0.236621,0.763379, maf-5-some-pop,maf-5-all-pops 621 chr1 4801423 4801424 rs61766962 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 621 chr1 4801636 4801637 rs382623 0 + T T C/T genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1186.000000,3822.000000, 0.236821,0.763179, maf-5-some-pop,maf-5-all-pops 621 chr1 4801655 4801656 rs382646 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3851.000000,1157.000000, 0.768970,0.231030, maf-5-some-pop,maf-5-all-pops 621 chr1 4801727 4801728 rs115486560 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4792.000000,216.000000, 0.956869,0.043131, 621 chr1 4801922 4801923 rs392620 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3751.000000,1257.000000, 0.749002,0.250998, maf-5-some-pop 621 chr1 4802154 4802156 rs144492725 0 + AA AA -/AA genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,EVA-GONL,LUNTER,PJP,SSMP,TISHKOFF, 2 -,AA, 1184.000000,3824.000000, 0.236422,0.763578, 621 chr1 4802275 4802276 rs145771561 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,C, 579.000000,4429.000000, 0.115615,0.884385, 621 chr1 4802297 4802298 rs78344694 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, 621 chr1 4802322 4802323 rs9787146 0 + G G C/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1161.000000,3847.000000, 0.231829,0.768171, maf-5-some-pop,maf-5-all-pops 621 chr1 4802331 4802332 rs61766963 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 C,G, 4931.000000,77.000000, 0.984625,0.015375, 621 chr1 4802512 4802513 rs448741 0 + C C C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 3245.000000,1763.000000, 0.647963,0.352037, maf-5-some-pop,maf-5-all-pops 621 chr1 4802727 4802728 rs431966 0 + C C C/G genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,G, 4186.000000,822.000000, 0.835863,0.164137, maf-5-some-pop 621 chr1 4802758 4802759 rs139166903 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 621 chr1 4802862 4802863 rs144971746 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 53.000000,4955.000000, 0.010583,0.989417, 621 chr1 4802982 4802985 rs3835540 0 + GAC GAC -/GAC genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,GAC, 1568.000000,3440.000000, 0.313099,0.686901, 621 chr1 4803015 4803016 rs61766964 0 + C C A/C genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 A,C, 77.000000,4931.000000, 0.015375,0.984625, 621 chr1 4803113 4803114 rs61766965 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BCMHGSC_JDW,EVA-GONL,JMKIDD_LAB, 2 A,G, 78.000000,4930.000000, 0.015575,0.984425, 621 chr1 4803264 4803265 rs367673 0 + G G C/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,G, 2756.000000,2252.000000, 0.550319,0.449681, maf-5-some-pop,maf-5-all-pops 621 chr1 4803585 4803586 rs540299 0 + A A A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2252.000000,2756.000000, 0.449681,0.550319, maf-5-some-pop,maf-5-all-pops 621 chr1 4803593 4803594 rs147121105 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 621 chr1 4803635 4803636 rs648346 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1303.000000,3705.000000, 0.260184,0.739816, maf-5-some-pop,maf-5-all-pops 621 chr1 4803833 4803834 rs393976 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2336.000000,2672.000000, 0.466454,0.533546, maf-5-some-pop 621 chr1 4803989 4803998 rs141403753 0 + GCTCTCCAG GCTCTCCAG -/GCTCTCCAG genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER, 2 -,GCTCTCCAG, 2684.000000,2324.000000, 0.535942,0.464058, 621 chr1 4804284 4804285 rs375781 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1439.000000,3569.000000, 0.287340,0.712660, maf-5-some-pop 621 chr1 4804341 4804342 rs4654598 0 + G G A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,WI_SSAHASNP, 2 A,G, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop 621 chr1 4804351 4804352 rs406065 0 + A A A/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,T, 2322.000000,2686.000000, 0.463658,0.536342, maf-5-some-pop,maf-5-all-pops 621 chr1 4804382 4804383 rs140070602 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,T, 314.000000,4694.000000, 0.062700,0.937300, 621 chr1 4804482 4804483 rs61766966 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 A,G, 77.000000,4931.000000, 0.015375,0.984625, 621 chr1 4804551 4804552 rs396199 0 + G G A/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1235.000000,3773.000000, 0.246605,0.753395, maf-5-some-pop,maf-5-all-pops 621 chr1 4804687 4804693 rs528205989 0 + CACACA CACACA -/CACACA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CACACA, 930.000000,4078.000000, 0.185703,0.814297, 621 chr1 4804689 4804693 rs546685337 0 + CACA CACA -/CACA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CACA, 706.000000,4302.000000, 0.140974,0.859026, 621 chr1 4804691 4804693 rs561687032 0 + CA CA -/CA genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,CA, 967.000000,4041.000000, 0.193091,0.806909, 621 chr1 4804728 4804729 rs145676981 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 73.000000,4935.000000, 0.014577,0.985423, 621 chr1 4804745 4804746 rs413178 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2302.000000,2706.000000, 0.459665,0.540335, maf-5-some-pop,maf-5-all-pops 621 chr1 4804871 4804872 rs72859643 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL, 2 A,G, 4885.000000,123.000000, 0.975439,0.024561, maf-5-some-pop,maf-5-all-pops 621 chr1 4804885 4804886 rs74641764 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4693.000000,315.000000, 0.937101,0.062899, maf-5-some-pop 621 chr1 4805033 4805034 rs3753708 0 + A A A/C genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,C, 4040.000000,968.000000, 0.806709,0.193291, maf-5-some-pop 621 chr1 4805105 4805106 rs414176 0 + A A A/C genomic single unknown 0 0 intron exact 1 23 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,C, 3499.000000,1509.000000, 0.698682,0.301318, maf-5-some-pop 621 chr1 4805414 4805415 rs148481626 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 621 chr1 4805673 4805674 rs409048 0 + T T C/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 1495.000000,3513.000000, 0.298522,0.701478, maf-5-some-pop 621 chr1 4805972 4805973 rs79515132 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4268.000000,740.000000, 0.852236,0.147764, maf-5-some-pop,maf-5-all-pops 621 chr1 4806017 4806018 rs116630819 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 621 chr1 4806083 4806084 rs72638894 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4694.000000,314.000000, 0.937300,0.062700, maf-5-some-pop 621 chr1 4806102 4806103 rs116819039 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4943.000000,65.000000, 0.987021,0.012979, 621 chr1 4806317 4806318 rs114097897 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 4937.000000,71.000000, 0.985823,0.014177, maf-5-some-pop,maf-5-all-pops 621 chr1 4806337 4806338 rs75263138 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4268.000000,740.000000, 0.852236,0.147764, maf-5-some-pop,maf-5-all-pops 621 chr1 4806380 4806381 rs368808 0 + A A A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2316.000000,2692.000000, 0.462460,0.537540, maf-5-some-pop,maf-5-all-pops 621 chr1 4806549 4806550 rs11586743 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 1319.000000,3689.000000, 0.263379,0.736621, maf-5-some-pop,maf-5-all-pops 621 chr1 4806872 4806873 rs72638897 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 4688.000000,320.000000, 0.936102,0.063898, maf-5-some-pop 621 chr1 4807242 4807243 rs61766967 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 C,T, 79.000000,4929.000000, 0.015775,0.984225, 621 chr1 4807958 4807959 rs142796410 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4935.000000,73.000000, 0.985423,0.014577, 621 chr1 4807972 4807973 rs61766968 0 + G G A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 1248.000000,3760.000000, 0.249201,0.750799, maf-5-some-pop,maf-5-all-pops 621 chr1 4808093 4808094 rs75110002 0 + G G G/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4264.000000,744.000000, 0.851438,0.148562, maf-5-some-pop,maf-5-all-pops 621 chr1 4808544 4808545 rs394808 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1218.000000,3790.000000, 0.243211,0.756789, 621 chr1 4808675 4808676 rs395145 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2646.000000,2362.000000, 0.528355,0.471645, 621 chr1 4808719 4808720 rs143270264 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4954.000000,54.000000, 0.989217,0.010783, 621 chr1 4809056 4809057 rs116589306 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 621 chr1 4809178 4809179 rs76989491 0 + T T C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 285.000000,4723.000000, 0.056909,0.943091, 621 chr1 4809305 4809306 rs115448249 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,JMKIDD_LAB, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 621 chr1 4809436 4809437 rs114563016 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 621 chr1 4809437 4809438 rs72638900 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4629.000000,379.000000, 0.924321,0.075679, maf-5-some-pop 621 chr1 4809490 4809491 rs12090274 0 + G G C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,AFFY,PERLEGEN,SC_SNP,TISHKOFF, 2 C,G, 51.000000,4957.000000, 0.010184,0.989816, 621 chr1 4809707 4809708 rs116406360 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 621 chr1 4809760 4809761 rs115735532 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 621 chr1 4809790 4809791 rs114152380 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 66.000000,4942.000000, 0.013179,0.986821, 621 chr1 4810049 4810050 rs115343942 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4807.000000,201.000000, 0.959864,0.040136, 621 chr1 4810070 4810071 rs115148079 0 + T T C/T genomic single by-cluster,by-frequency,by-1000genomes 0.029845 0.118456 intron exact 1 2 1000GENOMES,ILLUMINA, 2 C,T, 32.000000,206.000000, 0.134454,0.865546, maf-5-some-pop,maf-5-all-pops 621 chr1 4810265 4810266 rs115279711 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 70.000000,4938.000000, 0.013978,0.986022, 621 chr1 4811041 4811042 rs148621284 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 621 chr1 4811152 4811153 rs77501982 0 + A A A/G genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BCM-HGSC-SUB,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4260.000000,748.000000, 0.850639,0.149361, maf-5-some-pop 621 chr1 4811382 4811383 rs449154 0 + A A A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4596.000000,412.000000, 0.917732,0.082268, maf-5-some-pop 621 chr1 4811434 4811435 rs114386148 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 66.000000,4942.000000, 0.013179,0.986821, 621 chr1 4811600 4811601 rs114922081 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 621 chr1 4811693 4811694 rs114298939 0 + T T C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 204.000000,4804.000000, 0.040735,0.959265, 621 chr1 4811998 4811999 rs76270994 0 + C C C/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4334.000000,674.000000, 0.865415,0.134585, maf-5-some-pop,maf-5-all-pops 621 chr1 4813005 4813006 rs117348342 0 + A A A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,SSMP, 2 A,G, 4922.000000,86.000000, 0.982827,0.017173, 621 chr1 4813138 4813141 rs5772180 0 + CTC CTC -/CTC genomic deletion unknown 0 0 intron range 1 8 1000GENOMES,ABI,EVA-GONL,GMI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,CTC, 1941.000000,3067.000000, 0.387580,0.612420, 621 chr1 4813359 4813360 rs72639906 0 + C C C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4540.000000,468.000000, 0.906550,0.093451, maf-5-some-pop,maf-5-all-pops 621 chr1 4813850 4813851 rs35847522 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,SSMP, 2 C,T, 4957.000000,51.000000, 0.989816,0.010184, 621 chr1 4813872 4813873 rs141455938 0 + C C C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4895.000000,113.000000, 0.977436,0.022564, 621 chr1 4813922 4813923 rs117177956 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, 621 chr1 4813954 4813955 rs72639909 0 + T T C/T genomic single unknown 0 0 intron exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 374.000000,4634.000000, 0.074680,0.925319, maf-5-some-pop 621 chr1 4814116 4814117 rs434474 0 + A A A/T genomic single unknown 0 0 intron exact 1 25 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 2130.000000,2878.000000, 0.425319,0.574681, maf-5-some-pop,maf-5-all-pops 621 chr1 4814271 4814277 rs201437559 0 + TTCTAT TTCTAT -/TTCTAT genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,EVA-GONL, 2 -,TTCTAT, 194.000000,4814.000000, 0.038738,0.961262, 621 chr1 4814462 4814463 rs114277829 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 111.000000,4897.000000, 0.022164,0.977835, 621 chr1 4814507 4814508 rs413383 0 - G G C/G genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 621 chr1 4814655 4814656 rs74051959 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4930.000000,78.000000, 0.984425,0.015575, maf-5-some-pop,maf-5-all-pops 621 chr1 4814925 4814926 rs3835541 0 + A A -/A genomic deletion unknown 0 0 intron exact 1 9 1000GENOMES,EVA-GONL,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF,YUSUKE, 2 -,A, 881.000000,4127.000000, 0.175919,0.824081, 621 chr1 4815008 4815009 rs3766971 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4632.000000,376.000000, 0.924920,0.075080, maf-5-some-pop 621 chr1 4815179 4815180 rs115318648 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 53.000000,4955.000000, 0.010583,0.989417, 621 chr1 4815364 4815365 rs756538 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BCM_SSAHASNP,BL,EVA-GONL,GMI,JMKIDD_LAB,SEQUENOM,SSMP,TSC-CSHL,WI_SSAHASNP, 2 A,G, 681.000000,4327.000000, 0.135982,0.864018, maf-5-some-pop,maf-5-all-pops 621 chr1 4815476 4815477 rs434504 0 + G G A/G genomic single unknown 0 0 intron exact 1 27 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 3080.000000,1928.000000, 0.615016,0.384984, maf-5-some-pop,maf-5-all-pops 621 chr1 4815718 4815718 rs564324213 0 + - - -/GTAAGGAATGCTTTACTT genomic insertion unknown 0 0 intron between 1 1 1000GENOMES, 2 -,GTAAGGAATGCTTTACTT, 4953.000000,55.000000, 0.989018,0.010982, 621 chr1 4815802 4815803 rs139307912 0 + G G A/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 72.000000,4936.000000, 0.014377,0.985623, 621 chr1 4815826 4815827 rs549458 0 - A A A/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,T, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 621 chr1 4815879 4815879 rs112286312 0 + - - -/T genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,T, 4763.000000,245.000000, 0.951078,0.048922, 621 chr1 4815893 4815894 rs115450733 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4944.000000,64.000000, 0.987220,0.012780, 621 chr1 4815914 4815915 rs76545972 0 + A A A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4374.000000,634.000000, 0.873403,0.126597, maf-5-some-pop 621 chr1 4816136 4816137 rs114620270 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 144.000000,4864.000000, 0.028754,0.971246, maf-5-some-pop,maf-5-all-pops 621 chr1 4816307 4816308 rs114144446 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 140.000000,4868.000000, 0.027955,0.972045, maf-5-some-pop,maf-5-all-pops 621 chr1 4816343 4816344 rs113549778 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, maf-5-some-pop,maf-5-all-pops 621 chr1 4816554 4816555 rs74051961 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,G, 4865.000000,143.000000, 0.971446,0.028554, 621 chr1 4817035 4817036 rs77759903 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,G, 4822.000000,186.000000, 0.962859,0.037141, 621 chr1 4817257 4817258 rs71640946 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4519.000000,489.000000, 0.902356,0.097644, maf-5-some-pop,maf-5-all-pops 621 chr1 4817322 4817323 rs115110824 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 621 chr1 4817507 4817508 rs11591221 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,KRIBB_YJKIM,SSMP, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 621 chr1 4817663 4817664 rs113788643 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 A,G, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop,maf-5-all-pops 621 chr1 4817674 4817675 rs34072519 0 + T T G/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,ABI,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP, 2 G,T, 192.000000,4816.000000, 0.038339,0.961661, 621 chr1 4817716 4817717 rs16838479 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,AFFY,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 C,T, 4785.000000,223.000000, 0.955471,0.044529, maf-5-some-pop 621 chr1 4817755 4817756 rs61763718 0 + C C C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4664.000000,344.000000, 0.931310,0.068690, 621 chr1 4818014 4818015 rs33969697 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 12 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 2897.000000,2111.000000, 0.578474,0.421526, 621 chr1 4818131 4818132 rs148236648 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4862.000000,146.000000, 0.970847,0.029153, 621 chr1 4818196 4818197 rs7553204 0 + T T C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2092.000000,2916.000000, 0.417732,0.582268, maf-5-some-pop,maf-5-all-pops 621 chr1 4818362 4818363 rs7537345 0 + G G A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 958.000000,4050.000000, 0.191294,0.808706, maf-5-some-pop 621 chr1 4818382 4818383 rs113226922 0 + A A A/G genomic single unknown 0 0 intron exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4728.000000,280.000000, 0.944089,0.055911, maf-5-some-pop 621 chr1 4818602 4818603 rs117179206 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 192.000000,4816.000000, 0.038339,0.961661, 621 chr1 4818604 4818605 rs111370711 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, maf-5-some-pop,maf-5-all-pops 621 chr1 4818876 4818877 rs3753716 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,YUSUKE, 2 C,G, 4799.000000,209.000000, 0.958267,0.041733, 621 chr1 4818921 4818922 rs3753717 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 192.000000,4816.000000, 0.038339,0.961661, 621 chr1 4819095 4819096 rs6696372 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,HGSV,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 C,T, 4045.000000,963.000000, 0.807708,0.192292, maf-5-some-pop 621 chr1 4819144 4819145 rs74051962 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 74.000000,4934.000000, 0.014776,0.985224, 621 chr1 4819164 4819165 rs3753719 0 + T T C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 192.000000,4816.000000, 0.038339,0.961661, 621 chr1 4819582 4819583 rs187790975 0 + C C C/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,G, 4932.000000,76.000000, 0.984824,0.015176, 621 chr1 4819732 4819733 rs3820256 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 188.000000,4820.000000, 0.037540,0.962460, 621 chr1 4819879 4819880 rs3753722 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,YUSUKE, 2 C,T, 4822.000000,186.000000, 0.962859,0.037141, 621 chr1 4820093 4820094 rs113430544 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 621 chr1 4820261 4820262 rs112340678 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 151.000000,4857.000000, 0.030152,0.969848, maf-5-some-pop,maf-5-all-pops 621 chr1 4820280 4820284 rs201390566 0 + GTAA GTAA -/GTAA genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,LUNTER, 2 -,GTAA, 51.000000,4957.000000, 0.010184,0.989816, 621 chr1 4820304 4820304 rs5772181 0 + - - -/GA genomic insertion unknown 0 0 intron between 1 7 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,GMI,LUNTER, 2 -,GA, 1711.000000,3297.000000, 0.341653,0.658347, 621 chr1 4820339 4820340 rs34125417 0 + T T A/T genomic single unknown 0 0 intron exact 1 7 1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 203.000000,4805.000000, 0.040535,0.959465, maf-5-some-pop,maf-5-all-pops 621 chr1 4820399 4820403 rs113887458 0 + TGTG TGTG -/TGTG genomic deletion unknown 0 0 intron range 1 2 1000GENOMES,BUSHMAN, 2 -,TGTG, 58.000000,4950.000000, 0.011582,0.988419, 621 chr1 4820650 4820651 rs3753723 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 1744.000000,3264.000000, 0.348243,0.651757, maf-5-some-pop,maf-5-all-pops 621 chr1 4820798 4820799 rs397559 0 + C C C/T genomic single unknown 0 0 intron exact 1 28 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 2 C,T, 2088.000000,2920.000000, 0.416933,0.583067, maf-5-some-pop,maf-5-all-pops 621 chr1 4820864 4820865 rs145381084 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, 621 chr1 4821022 4821023 rs74051963 0 + A A A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA-UK,TISHKOFF, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 621 chr1 4821048 4821049 rs3766974 0 + A A A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 4815.000000,193.000000, 0.961462,0.038538, maf-5-some-pop 621 chr1 4821105 4821106 rs117666364 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 191.000000,4817.000000, 0.038139,0.961861, 621 chr1 4821587 4821588 rs9426481 0 + G G G/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 4220.000000,788.000000, 0.842652,0.157348, maf-5-some-pop,maf-5-all-pops 621 chr1 4821592 4821593 rs144605950 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 621 chr1 4821836 4821837 rs12063192 0 + C C C/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 4924.000000,84.000000, 0.983227,0.016773, 621 chr1 4822272 4822273 rs61277845 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 1047.000000,3961.000000, 0.209065,0.790935, maf-5-some-pop,maf-5-all-pops 621 chr1 4822316 4822317 rs150899029 0 + A A A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 4935.000000,73.000000, 0.985423,0.014577, 621 chr1 4822623 4822624 rs202182641 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,GMI,SSMP, 2 -,T, 57.000000,4951.000000, 0.011382,0.988618, 621 chr1 4822687 4822688 rs61513210 0 + A A A/G genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 3961.000000,1047.000000, 0.790935,0.209065, maf-5-some-pop,maf-5-all-pops 621 chr1 4822879 4822880 rs113146065 0 + C C C/T genomic single unknown 0 0 intron exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4907.000000,101.000000, 0.979832,0.020168, 621 chr1 4823077 4823078 rs113925036 0 + G G G/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, 2 G,T, 4951.000000,57.000000, 0.988618,0.011382, 621 chr1 4823081 4823082 rs3835542 0 + C C -/C genomic deletion unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,LUNTER,SSMP,YUSUKE, 2 -,C, 186.000000,4822.000000, 0.037141,0.962859, 621 chr1 4823110 4823111 rs760815 0 + C C A/C genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,C, 3133.000000,1875.000000, 0.625599,0.374401, maf-5-some-pop,maf-5-all-pops 621 chr1 4823138 4823139 rs111622387 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, 621 chr1 4823190 4823191 rs12123353 0 + A A A/G genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3105.000000,1903.000000, 0.620008,0.379992, maf-5-some-pop,maf-5-all-pops 621 chr1 4823200 4823201 rs2743978 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3287.000000,1721.000000, 0.656350,0.343650, maf-5-some-pop,maf-5-all-pops 621 chr1 4823354 4823355 rs114568229 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 G,T, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop,maf-5-all-pops 621 chr1 4823467 4823468 rs12119784 0 + G G A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1031.000000,3977.000000, 0.205871,0.794129, maf-5-some-pop,maf-5-all-pops 621 chr1 4823491 4823492 rs12119789 0 + G G A/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1988.000000,3020.000000, 0.396965,0.603035, maf-5-some-pop,maf-5-all-pops 621 chr1 4823708 4823709 rs111972941 0 + A A A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 4907.000000,101.000000, 0.979832,0.020168, 621 chr1 4823816 4823817 rs113189255 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,G, 4951.000000,57.000000, 0.988618,0.011382, 621 chr1 4823822 4823823 rs411832 0 + G G C/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,G, 3521.000000,1487.000000, 0.703075,0.296925, maf-5-some-pop,maf-5-all-pops 621 chr1 4823948 4823949 rs144094903 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4820.000000,188.000000, 0.962460,0.037540, 621 chr1 4824050 4824051 rs72859701 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 C,G, 4942.000000,66.000000, 0.986821,0.013179, 621 chr1 4824062 4824063 rs425005 0 + C C A/C genomic single unknown 0 0 intron exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 804.000000,4204.000000, 0.160543,0.839457, maf-5-some-pop 621 chr1 4824182 4824183 rs12062212 0 + G G A/G genomic single unknown 0 0 intron exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1988.000000,3020.000000, 0.396965,0.603035, maf-5-some-pop,maf-5-all-pops 621 chr1 4824310 4824311 rs12066439 0 + C C C/T genomic single unknown 0 0 intron exact 1 13 1000GENOMES,AFFY,BL,BUSHMAN,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3999.000000,1009.000000, 0.798522,0.201478, maf-5-some-pop 621 chr1 4824347 4824348 rs12069833 0 + T T C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 2254.000000,2754.000000, 0.450080,0.549920, maf-5-some-pop,maf-5-all-pops 621 chr1 4824437 4824438 rs140912535 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 147.000000,4861.000000, 0.029353,0.970647, 621 chr1 4824741 4824742 rs424723 0 + C C C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3821.000000,1187.000000, 0.762979,0.237021, maf-5-some-pop 621 chr1 4824830 4824831 rs143841020 0 + G G G/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 G,T, 4952.000000,56.000000, 0.988818,0.011182, 621 chr1 4825354 4825355 rs35638782 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,ABI,BUSHMAN,ENSEMBL,TISHKOFF, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, maf-5-some-pop,maf-5-all-pops 621 chr1 4825534 4825534 rs71580284 0 + - - -/GAGAGACATGAGTGAAGAAG genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,HUMANGENOME_JCVI,LUNTER, 2 -,GAGAGACATGAGTGAAGAAG, 2967.000000,2041.000000, 0.592452,0.407548, 621 chr1 4825599 4825600 rs116043244 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 621 chr1 4825891 4825892 rs57646199 0 + C C C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4208.000000,800.000000, 0.840256,0.159744, maf-5-some-pop,maf-5-all-pops 621 chr1 4826062 4826063 rs12071255 0 + A A A/G genomic single unknown 0 0 intron exact 1 12 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3998.000000,1010.000000, 0.798323,0.201677, maf-5-some-pop 621 chr1 4826276 4826276 rs35816653 0 + - - -/T genomic insertion unknown 0 0 intron between 1 8 1000GENOMES,ABI,BILGI_BIOE,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 3860.000000,1148.000000, 0.770767,0.229233, 621 chr1 4826504 4826505 rs9426502 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 800.000000,4208.000000, 0.159744,0.840256, maf-5-some-pop 621 chr1 4826564 4826565 rs3766975 0 + G G G/T genomic single unknown 0 0 intron exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE, 2 G,T, 2967.000000,2041.000000, 0.592452,0.407548, maf-5-some-pop,maf-5-all-pops 621 chr1 4826624 4826625 rs17349250 0 + A A A/G genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3999.000000,1009.000000, 0.798522,0.201478, maf-5-some-pop 621 chr1 4826628 4826629 rs75685463 0 + T T G/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 76.000000,4932.000000, 0.015176,0.984824, 621 chr1 4826659 4826660 rs2743980 0 + G G A/G genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 3495.000000,1513.000000, 0.697883,0.302117, maf-5-some-pop 621 chr1 4827014 4827015 rs115846729 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 56.000000,4952.000000, 0.011182,0.988818, 621 chr1 4827039 4827040 rs7548728 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 800.000000,4208.000000, 0.159744,0.840256, maf-5-some-pop 621 chr1 4827433 4827434 rs111763976 0 + G G A/G genomic single unknown 0 0 intron exact 1 5 1000GENOMES,BCM-HGSC-SUB,PJP,SSMP,TISHKOFF, 2 A,G, 429.000000,4579.000000, 0.085663,0.914337, 621 chr1 4827568 4827569 rs575009059 0 + T T C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 185.000000,4823.000000, 0.036941,0.963059, 621 chr1 4827576 4827576 rs576846968 0 + - - -/ACA genomic insertion unknown 0 0 intron between 1 3 1000GENOMES,EVA-GONL,SSIP, 2 -,ACA, 4384.000000,624.000000, 0.875399,0.124601, 621 chr1 4827583 4827584 rs71640947 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,GMI,HUMANGENOME_JCVI, 2 C,T, 4368.000000,640.000000, 0.872204,0.127796, 621 chr1 4827627 4827636 rs540416685 0 + ATCACCATC ATCACCATC -/ATCACCATC genomic deletion unknown 0 0 intron range 1 1 1000GENOMES, 2 -,ATCACCATC, 57.000000,4951.000000, 0.011382,0.988618, 621 chr1 4828155 4828155 rs140096110 0 + - - -/A genomic insertion unknown 0 0 intron between 1 4 1000GENOMES,EVA-GONL,LUNTER,SSMP, 2 -,A, 4914.000000,94.000000, 0.981230,0.018770, 621 chr1 4828242 4828243 rs61763721 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4626.000000,382.000000, 0.923722,0.076278, 621 chr1 4828265 4828266 rs7552069 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BL,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 1001.000000,4007.000000, 0.199880,0.800120, maf-5-some-pop,maf-5-all-pops 621 chr1 4828289 4828290 rs114965801 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4912.000000,96.000000, 0.980831,0.019169, 621 chr1 4828375 4828376 rs139384583 0 + T T -/T genomic deletion unknown 0 0 intron exact 1 3 1000GENOMES,BILGI_BIOE,BL, 2 -,T, 583.000000,4425.000000, 0.116414,0.883586, 621 chr1 4828389 4828389 rs113666131 0 + - - -/TGTT genomic insertion unknown 0 0 intron between 1 5 1000GENOMES,BILGI_BIOE,BUSHMAN,LUNTER,TISHKOFF, 2 -,TGTT, 4000.000000,1008.000000, 0.798722,0.201278, 621 chr1 4828429 4828430 rs187799871 0 + A A A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 4951.000000,57.000000, 0.988618,0.011382, 621 chr1 4828578 4828579 rs116199187 0 + C C C/T genomic single unknown 0 0 intron exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,SSMP,TISHKOFF, 2 C,T, 4954.000000,54.000000, 0.989217,0.010783, 621 chr1 4828714 4828715 rs11579209 0 + C C C/T genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3234.000000,1774.000000, 0.645767,0.354233, maf-5-some-pop,maf-5-all-pops 621 chr1 4829471 4829472 rs72861307 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 621 chr1 4829833 4829834 rs184473115 0 + C C C/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4848.000000,160.000000, 0.968051,0.031949, 621 chr1 4829834 4829835 rs2072901 0 + A A A/G genomic single unknown 0 0 intron exact 1 15 1000GENOMES,ABI,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGBASE,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3934.000000,1074.000000, 0.785543,0.214457, maf-5-some-pop,maf-5-all-pops 621 chr1 4829880 4829881 rs2072902 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,HGBASE,JMKIDD_LAB,NHLBI-ESP,SSMP,YUSUKE, 2 A,G, 164.000000,4844.000000, 0.032748,0.967252, 621 chr1 4830110 4830111 rs115280211 0 + T T C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, 621 chr1 4830405 4830406 rs410413 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL,YUSUKE, 2 C,T, 3227.000000,1781.000000, 0.644369,0.355631, maf-5-some-pop,maf-5-all-pops 621 chr1 4830408 4830409 rs410414 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_JCM,SC_SNP,SSAHASNP,SSMP,TSC-CSHL,YUSUKE, 2 C,T, 3225.000000,1783.000000, 0.643970,0.356030, maf-5-some-pop,maf-5-all-pops 621 chr1 4830709 4830710 rs74051975 0 + A A A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB,TISHKOFF, 2 A,G, 4838.000000,170.000000, 0.966054,0.033946, maf-5-some-pop,maf-5-all-pops 621 chr1 4830724 4830725 rs442023 0 - C C A/C/G/T genomic single unknown 0 0 intron exact 1 SingleClassQuadAllelic 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, 4 A,C,G,T, 2594.000000,2414.000000,2414.000000,2594.000000, 0.258986,0.241014,0.241014,0.258986, maf-5-some-pop,maf-5-all-pops 621 chr1 4830759 4830764 rs71580285 0 + CAAGG CAAGG -/CAAGG genomic deletion unknown 0 0 intron range 1 5 1000GENOMES,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,CAAGG, 787.000000,4221.000000, 0.157149,0.842851, 621 chr1 4830828 4830829 rs9426503 0 + G G C/G genomic single unknown 0 0 intron exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 794.000000,4214.000000, 0.158546,0.841454, maf-5-some-pop 621 chr1 4830899 4830900 rs9426483 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4213.000000,795.000000, 0.841254,0.158746, maf-5-some-pop 621 chr1 4830963 4830964 rs149718134 0 + C C A/C genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 57.000000,4951.000000, 0.011382,0.988618, 621 chr1 4831004 4831005 rs145540130 0 + G G C/G genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 57.000000,4951.000000, 0.011382,0.988618, 621 chr1 4831129 4831130 rs395508 0 + G G A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 3108.000000,1900.000000, 0.620607,0.379393, maf-5-some-pop,maf-5-all-pops 621 chr1 4831192 4831193 rs418045 0 + T T C/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4919.000000,89.000000, 0.982228,0.017772, maf-5-some-pop 621 chr1 4831335 4831336 rs141935190 0 + C C C/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 621 chr1 4831480 4831481 rs406847 0 + A A A/G genomic single unknown 0 0 intron exact 1 21 1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 A,G, 1776.000000,3232.000000, 0.354633,0.645367, maf-5-some-pop,maf-5-all-pops 621 chr1 4831751 4831752 rs12030265 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP, 2 C,T, 4218.000000,790.000000, 0.842252,0.157748, maf-5-some-pop,maf-5-all-pops 621 chr1 4831994 4831995 rs12030346 0 + C C C/T genomic single unknown 0 0 intron exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3787.000000,1221.000000, 0.756190,0.243810, maf-5-some-pop,maf-5-all-pops 621 chr1 4832143 4832146 rs111647192 0 + TTT TTT -/TTT genomic deletion unknown 0 0 intron range 1 6 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,GMI,SSMP, 2 -,TTT, 2936.000000,2072.000000, 0.586262,0.413738, 621 chr1 4832154 4832155 rs74449743 0 + T T A/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,BL,ENSEMBL,GMI, 2 A,T, 3097.000000,1911.000000, 0.618411,0.381589, 621 chr1 4832155 4832156 rs559653126 0 + A A A/T genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,T, 4698.000000,310.000000, 0.938099,0.061901, 621 chr1 4832210 4832211 rs116716557 0 + T T G/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA, 2 G,T, 57.000000,4951.000000, 0.011382,0.988618, 621 chr1 4832233 4832234 rs16839650 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,PERLEGEN,TISHKOFF, 2 C,T, 4953.000000,55.000000, 0.989018,0.010982, 621 chr1 4832602 4832603 rs115807997 0 + T T G/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,ILLUMINA,NHLBI-ESP, 2 G,T, 57.000000,4951.000000, 0.011382,0.988618, 621 chr1 4833205 4833206 rs145040149 0 + T T A/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 A,T, 57.000000,4951.000000, 0.011382,0.988618, 621 chr1 4833305 4833306 rs10915597 0 + T T C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,TISHKOFF, 2 C,T, 1063.000000,3945.000000, 0.212260,0.787740, maf-5-some-pop,maf-5-all-pops 621 chr1 4833373 4833374 rs10915598 0 + T T G/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,PJP,SSMP, 2 G,T, 386.000000,4622.000000, 0.077077,0.922923, maf-5-some-pop 621 chr1 4833380 4833381 rs414434 0 - G G C/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop 621 chr1 4833497 4833498 rs3766977 0 + G G G/T genomic single unknown 0 0 intron exact 1 16 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP,YUSUKE, 2 G,T, 4085.000000,923.000000, 0.815695,0.184305, maf-5-some-pop,maf-5-all-pops 621 chr1 4834222 4834223 rs116970518 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 159.000000,4849.000000, 0.031749,0.968251, 621 chr1 4834228 4834229 rs388631 0 + T T C/T genomic single unknown 0 0 intron exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3601.000000,1407.000000, 0.719050,0.280950, maf-5-some-pop,maf-5-all-pops 621 chr1 4834419 4834420 rs12747519 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 C,T, 4196.000000,812.000000, 0.837859,0.162141, maf-5-some-pop,maf-5-all-pops 621 chr1 4834564 4834565 rs117864953 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 6 1000GENOMES,CLINSEQ_SNP,ILLUMINA,JMKIDD_LAB,NHLBI-ESP,SSMP, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop 621 chr1 4834605 4834606 rs389959 0 + T T C/T genomic single unknown 0 0 untranslated-3 exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,NHLBI-ESP,PJP,SC_JCM,SSMP,TISHKOFF, 2 C,T, 795.000000,4213.000000, 0.158746,0.841254, maf-5-some-pop 621 chr1 4834820 4834821 rs6674631 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BCM_SSAHASNP,EVA-GONL,ILLUMINA,ILLUMINA-UK,TISHKOFF, 2 A,G, 109.000000,4899.000000, 0.021765,0.978235, maf-5-some-pop,maf-5-all-pops 621 chr1 4834850 4834851 rs397852 0 + T T C/T genomic single unknown 0 0 intron exact 1 26 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 3633.000000,1375.000000, 0.725439,0.274561, maf-5-some-pop,maf-5-all-pops 621 chr1 4834932 4834933 rs71640949 0 + G G A/G genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 800.000000,4208.000000, 0.159744,0.840256, maf-5-some-pop,maf-5-all-pops 621 chr1 4835374 4835375 rs399377 0 + T T C/T genomic single unknown 0 0 intron exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, 2 C,T, 3609.000000,1399.000000, 0.720647,0.279353, maf-5-some-pop,maf-5-all-pops 621 chr1 4835892 4835893 rs874613 0 + G G A/G genomic single unknown 0 0 intron exact 1 16 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 376.000000,4632.000000, 0.075080,0.924920, maf-5-some-pop 621 chr1 4836090 4836091 rs147759705 0 + T T C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 169.000000,4839.000000, 0.033746,0.966254, 621 chr1 4836120 4836121 rs394594 0 + A A A/G genomic single unknown 0 0 intron exact 1 25 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SC_SNP,SEQUENOM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 1398.000000,3610.000000, 0.279153,0.720847, maf-5-some-pop,maf-5-all-pops 621 chr1 4836544 4836545 rs145077240 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 621 chr1 4836673 4836674 rs138864817 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4844.000000,164.000000, 0.967252,0.032748, 621 chr1 4836791 4836792 rs140565693 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 621 chr1 4836931 4836932 rs145642623 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4951.000000,57.000000, 0.988618,0.011382, 621 chr1 4837380 4837381 rs36055235 0 + A A A/G genomic single unknown 0 0 intron exact 1 13 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 4252.000000,756.000000, 0.849042,0.150958, maf-5-some-pop 621 chr1 4837912 4837913 rs139007626 0 + G G C/G genomic single unknown 0 0 intron,near-gene-3 exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 76.000000,4932.000000, 0.015176,0.984824, 621 chr1 4838030 4838031 rs3753730 0 + A A A/G genomic single unknown 0 0 intron,near-gene-3 exact 1 5 1000GENOMES,GMI,JMKIDD_LAB,SSMP,YUSUKE, 2 A,G, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 621 chr1 4838145 4838146 rs10915599 0 + G G G/T genomic single unknown 0 0 intron,near-gene-3 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 3975.000000,1033.000000, 0.793730,0.206270, maf-5-some-pop,maf-5-all-pops 621 chr1 4838248 4838249 rs3753732 0 + C C A/C genomic single unknown 0 0 intron,near-gene-3 exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,YUSUKE, 2 A,C, 493.000000,4515.000000, 0.098443,0.901558, maf-5-some-pop,maf-5-all-pops 621 chr1 4838559 4838560 rs116616393 0 + G G A/G genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 88.000000,4920.000000, 0.017572,0.982428, 621 chr1 4838958 4838959 rs114062429 0 + C C C/T genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop,maf-5-all-pops 621 chr1 4839129 4839130 rs3753734 0 + C C C/T genomic single unknown 0 0 intron exact 1 12 1000GENOMES,ABI,BGI,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,YUSUKE, 2 C,T, 4254.000000,754.000000, 0.849441,0.150559, maf-5-some-pop 621 chr1 4839262 4839263 rs115917571 0 + C C C/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 4832.000000,176.000000, 0.964856,0.035144, 621 chr1 4839457 4839458 rs12128381 0 + C C C/T genomic single unknown 0 0 intron exact 1 10 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3690.000000,1318.000000, 0.736821,0.263179, maf-5-some-pop,maf-5-all-pops 621 chr1 4839480 4839481 rs115221982 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 621 chr1 4839626 4839627 rs113067004 0 + A A A/C genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 A,C, 4913.000000,95.000000, 0.981030,0.018970, maf-5-some-pop,maf-5-all-pops 621 chr1 4839701 4839702 rs140617804 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 79.000000,4929.000000, 0.015775,0.984225, 621 chr1 4839849 4839850 rs2802718 0 - G G C/G genomic single unknown 0 0 intron exact 1 20 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 5008.000000,5008.000000, 0.500000,0.500000, maf-5-some-pop,maf-5-all-pops 621 chr1 4839931 4839932 rs12033033 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,ABI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4171.000000,837.000000, 0.832867,0.167133, maf-5-some-pop,maf-5-all-pops 621 chr1 4840157 4840158 rs7544523 0 + T T C/T genomic single unknown 0 0 intron exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4251.000000,757.000000, 0.848842,0.151158, 621 chr1 4840318 4840319 rs114825202 0 + C C A/C genomic single unknown 0 0 intron exact 1 6 1000GENOMES,BL,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 162.000000,4846.000000, 0.032348,0.967652, 621 chr1 4840395 4840396 rs80300325 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 621 chr1 4840967 4840968 rs74338215 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 A,G, 137.000000,4871.000000, 0.027356,0.972644, maf-5-some-pop,maf-5-all-pops 621 chr1 4841037 4841038 rs58396442 0 + C C C/T genomic single unknown 0 0 intron exact 1 11 1000GENOMES,BGI,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 4037.000000,971.000000, 0.806110,0.193890, maf-5-some-pop,maf-5-all-pops 621 chr1 4841221 4841222 rs144484391 0 + G G A/G genomic single unknown 0 0 intron exact 1 1 1000GENOMES, 2 A,G, 64.000000,4944.000000, 0.012780,0.987220, 621 chr1 4841311 4841312 rs116296410 0 + G G A/G genomic single unknown 0 0 intron exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 98.000000,4910.000000, 0.019569,0.980431, 621 chr1 4841808 4841809 rs71640950 0 + G G A/G genomic single unknown 0 0 intron exact 1 6 1000GENOMES,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SSMP, 2 A,G, 758.000000,4250.000000, 0.151358,0.848642, maf-5-some-pop 621 chr1 4841912 4841913 rs114628353 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 621 chr1 4842020 4842021 rs71640951 0 + T T C/T genomic single unknown 0 0 intron exact 1 9 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP, 2 C,T, 758.000000,4250.000000, 0.151358,0.848642, maf-5-some-pop 621 chr1 4842103 4842104 rs74051833 0 + C C C/T genomic single unknown 0 0 intron exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 4911.000000,97.000000, 0.980631,0.019369, maf-5-some-pop,maf-5-all-pops 621 chr1 4842152 4842153 rs112250354 0 + C C C/T genomic single unknown 0 0 intron exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4945.000000,63.000000, 0.987420,0.012580, 621 chr1 4842512 4842513 rs1024170 0 + G G G/T genomic single unknown 0 0 intron exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PJP,SC_JCM,SEQUENOM,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 3892.000000,1116.000000, 0.777157,0.222843, maf-5-some-pop,maf-5-all-pops 621 chr1 4842979 4842980 rs12406384 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4628.000000,380.000000, 0.924121,0.075879, maf-5-some-pop 621 chr1 4842980 4842981 rs12074406 0 + G G A/G genomic single unknown 0 0 untranslated-3 exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF, 2 A,G, 2209.000000,2799.000000, 0.441094,0.558906, maf-5-some-pop,maf-5-all-pops 621 chr1 4843283 4843284 rs34960969 0 + T T -/T genomic deletion unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,ABI,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,SSMP, 2 -,T, 2589.000000,2419.000000, 0.516973,0.483027, 621 chr1 4843305 4843306 rs41311394 0 + C C C/T genomic single unknown 0 0 untranslated-3 exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SI_EXO,SSMP, 2 C,T, 3664.000000,1344.000000, 0.731629,0.268371, maf-5-some-pop,maf-5-all-pops 621 chr1 4843517 4843519 rs199866903 0 + TA TA -/TA genomic deletion unknown 0 0 untranslated-3 range 1 1 1000GENOMES, 2 -,TA, 93.000000,4915.000000, 0.018570,0.981430, 621 chr1 4843917 4843918 rs41304994 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 13 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SI_EXO,SSMP,TISHKOFF, 2 C,T, 3661.000000,1347.000000, 0.731030,0.268970, maf-5-some-pop,maf-5-all-pops 621 chr1 4844026 4844027 rs12037089 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 10 1000GENOMES,BGI,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,SC_SNP,SI_EXO,SSMP, 2 C,T, 4269.000000,739.000000, 0.852436,0.147564, maf-5-some-pop 621 chr1 4844093 4844094 rs59424906 0 + C C C/T genomic single unknown 0 0 near-gene-3 exact 1 3 1000GENOMES,COMPLETE_GENOMICS,HGSV, 2 C,T, 4867.000000,141.000000, 0.971845,0.028155, maf-5-some-pop,maf-5-all-pops 621 chr1 4844321 4844322 rs138857340 0 + C C C/G genomic single unknown 0 0 near-gene-3 exact 1 1 1000GENOMES, 2 C,G, 4928.000000,80.000000, 0.984026,0.015974, 621 chr1 4844375 4844376 rs9426506 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3650.000000,1358.000000, 0.728834,0.271166, maf-5-some-pop 621 chr1 4844376 4844377 rs114365532 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4944.000000,64.000000, 0.987220,0.012780, 621 chr1 4844530 4844531 rs55984067 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 1156.000000,3852.000000, 0.230831,0.769169, maf-5-some-pop,maf-5-all-pops 621 chr1 4844596 4844597 rs117514010 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 164.000000,4844.000000, 0.032748,0.967252, 621 chr1 4844729 4844730 rs137984359 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,ILLUMINA, 2 G,T, 4934.000000,74.000000, 0.985224,0.014776, 621 chr1 4844822 4844823 rs41355644 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,AFFY,AFFY_GWHS,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 382.000000,4626.000000, 0.076278,0.923722, maf-5-some-pop 621 chr1 4844995 4844996 rs111460521 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 325.000000,4683.000000, 0.064896,0.935104, 621 chr1 4845044 4845044 rs141804713 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,T, 4944.000000,64.000000, 0.987220,0.012780, 621 chr1 4845111 4845112 rs9426484 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1512.000000,3496.000000, 0.301917,0.698083, maf-5-some-pop 621 chr1 4845267 4845268 rs79985460 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 G,T, 353.000000,4655.000000, 0.070487,0.929513, 621 chr1 4845891 4845892 rs6426434 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 865.000000,4143.000000, 0.172724,0.827276, maf-5-some-pop 621 chr1 4846083 4846084 rs79642361 0 + T T A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 207.000000,4801.000000, 0.041334,0.958666, maf-5-some-pop,maf-5-all-pops 621 chr1 4846462 4846463 rs149789918 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4932.000000,76.000000, 0.984824,0.015176, 621 chr1 4846728 4846729 rs11584490 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 383.000000,4625.000000, 0.076478,0.923522, maf-5-some-pop 621 chr1 4846955 4846956 rs74631481 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, maf-5-some-pop,maf-5-all-pops 621 chr1 4847060 4847061 rs114733119 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4901.000000,107.000000, 0.978634,0.021366, maf-5-some-pop,maf-5-all-pops 621 chr1 4847239 4847240 rs148024671 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,C, 161.000000,4847.000000, 0.032149,0.967851, 621 chr1 4847593 4847594 rs11805709 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3855.000000,1153.000000, 0.769768,0.230232, maf-5-some-pop 621 chr1 4847844 4847845 rs4654460 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2949.000000,2059.000000, 0.588858,0.411142, maf-5-some-pop,maf-5-all-pops 621 chr1 4847989 4847990 rs117150412 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, 621 chr1 4848047 4848048 rs118072248 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4842.000000,166.000000, 0.966853,0.033147, 621 chr1 4848108 4848109 rs140787955 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4847.000000,161.000000, 0.967851,0.032149, 621 chr1 4848358 4848359 rs116917100 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 161.000000,4847.000000, 0.032149,0.967851, 621 chr1 4848458 4848459 rs74051834 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,ILLUMINA-UK, 2 C,T, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop,maf-5-all-pops 621 chr1 4848468 4848469 rs77216672 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 A,T, 87.000000,4921.000000, 0.017372,0.982628, maf-5-some-pop,maf-5-all-pops 621 chr1 4848666 4848667 rs115810121 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,G, 97.000000,4911.000000, 0.019369,0.980631, 621 chr1 4848807 4848808 rs12133924 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3519.000000,1489.000000, 0.702676,0.297324, maf-5-some-pop,maf-5-all-pops 621 chr1 4848948 4848949 rs17349327 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,PERLEGEN, 2 C,T, 4939.000000,69.000000, 0.986222,0.013778, 621 chr1 4849108 4849109 rs6701069 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 4216.000000,792.000000, 0.841853,0.158147, maf-5-some-pop 621 chr1 4849383 4849384 rs2235438 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 C,T, 2955.000000,2053.000000, 0.590056,0.409944, maf-5-some-pop,maf-5-all-pops 621 chr1 4849404 4849405 rs2235439 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,YUSUKE, 2 C,T, 358.000000,4650.000000, 0.071486,0.928514, maf-5-some-pop 622 chr1 4849828 4849829 rs74051836 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4890.000000,118.000000, 0.976438,0.023562, maf-5-some-pop,maf-5-all-pops 622 chr1 4849909 4849918 rs144313628 0 + ACTGCTAAT ACTGCTAAT -/ACTGCTAAT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BILGI_BIOE,EVA-GONL,LUNTER,SSMP, 2 -,ACTGCTAAT, 483.000000,4525.000000, 0.096446,0.903554, 622 chr1 4850440 4850441 rs145348921 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 166.000000,4842.000000, 0.033147,0.966853, 622 chr1 4850628 4850629 rs74051837 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 4858.000000,150.000000, 0.970048,0.029952, maf-5-some-pop,maf-5-all-pops 622 chr1 4850656 4850657 rs875402 0 + A A A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 A,G, 4622.000000,386.000000, 0.922923,0.077077, maf-5-some-pop 622 chr1 4850672 4850673 rs74051838 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 G,T, 71.000000,4937.000000, 0.014177,0.985823, maf-5-some-pop,maf-5-all-pops 622 chr1 4850822 4850823 rs909757 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, 2 C,T, 1344.000000,3664.000000, 0.268371,0.731629, maf-5-some-pop 622 chr1 4851008 4851012 rs199619811 0 + TTTG TTTG -/TTTG genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP, 2 -,TTTG, 386.000000,4622.000000, 0.077077,0.922923, 622 chr1 4851108 4851108 rs200612685 0 + - - -/CTAAAT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,CTAAAT, 4910.000000,98.000000, 0.980431,0.019569, 622 chr1 4851110 4851111 rs560579963 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4910.000000,98.000000, 0.980431,0.019569, 622 chr1 4851112 4851113 rs2235440 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,YUSUKE, 2 C,T, 4525.000000,483.000000, 0.903554,0.096446, maf-5-some-pop 622 chr1 4851114 4851115 rs552269860 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4910.000000,98.000000, 0.980431,0.019569, 622 chr1 4851291 4851292 rs2235442 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4456.000000,552.000000, 0.889776,0.110224, maf-5-some-pop 622 chr1 4851302 4851303 rs2235443 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSAHASNP,SSMP,TISHKOFF,YUSUKE, 2 A,G, 4455.000000,553.000000, 0.889577,0.110423, maf-5-some-pop 622 chr1 4851378 4851379 rs114034986 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA, 2 A,C, 66.000000,4942.000000, 0.013179,0.986821, 622 chr1 4851539 4851540 rs118062968 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4846.000000,162.000000, 0.967652,0.032348, 622 chr1 4851544 4851545 rs17345239 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 888.000000,4120.000000, 0.177316,0.822684, maf-5-some-pop 622 chr1 4851699 4851700 rs115863843 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,G, 87.000000,4921.000000, 0.017372,0.982628, 622 chr1 4851756 4851757 rs116243116 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 4912.000000,96.000000, 0.980831,0.019169, 622 chr1 4851791 4851792 rs74051839 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4692.000000,316.000000, 0.936901,0.063099, maf-5-some-pop,maf-5-all-pops 622 chr1 4851898 4851899 rs6662606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 3521.000000,1487.000000, 0.703075,0.296925, maf-5-some-pop 622 chr1 4851923 4851924 rs76732779 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,ILLUMINA, 2 C,T, 65.000000,4943.000000, 0.012979,0.987021, 622 chr1 4851948 4851948 rs112369095 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 8 1000GENOMES,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,T, 3566.000000,1442.000000, 0.712061,0.287939, 622 chr1 4851988 4851989 rs6657800 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 3695.000000,1313.000000, 0.737819,0.262181, maf-5-some-pop 622 chr1 4852041 4852041 rs570105476 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,SSIP, 2 -,T, 4824.000000,184.000000, 0.963259,0.036741, 622 chr1 4852365 4852369 rs371139618 0 + AAAC AAAC -/AAAC genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,SSIP,SSMP, 2 -,AAAC, 166.000000,4842.000000, 0.033147,0.966853, 622 chr1 4852746 4852747 rs7520826 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3053.000000,1955.000000, 0.609625,0.390375, maf-5-some-pop 622 chr1 4852907 4852908 rs59226815 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, 622 chr1 4852952 4852953 rs150687486 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4842.000000,166.000000, 0.966853,0.033147, 622 chr1 4852966 4852967 rs12085241 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,G, 4944.000000,64.000000, 0.987220,0.012780, 622 chr1 4853067 4853068 rs12408533 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 A,G, 4643.000000,365.000000, 0.927117,0.072883, maf-5-some-pop 622 chr1 4853687 4853688 rs932350 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 2836.000000,2172.000000, 0.566294,0.433706, maf-5-some-pop,maf-5-all-pops 622 chr1 4853746 4853747 rs12082538 0 + G G C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1625.000000,3383.000000, 0.324481,0.675519, maf-5-some-pop 622 chr1 4853779 4853779 rs56735073 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 10 1000GENOMES,BGI,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,LUNTER,PJP,SSMP,TISHKOFF, 2 -,G, 3509.000000,1499.000000, 0.700679,0.299321, 622 chr1 4854009 4854010 rs114922352 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4018.000000,990.000000, 0.802316,0.197684, maf-5-some-pop,maf-5-all-pops 622 chr1 4854398 4854399 rs78993684 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 340.000000,4668.000000, 0.067891,0.932109, maf-5-some-pop 622 chr1 4854948 4854949 rs11807645 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF, 2 A,G, 1741.000000,3267.000000, 0.347644,0.652356, maf-5-some-pop 622 chr1 4855349 4855350 rs115850618 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 622 chr1 4855963 4855964 rs77360925 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 83.000000,4925.000000, 0.016573,0.983427, maf-5-some-pop,maf-5-all-pops 622 chr1 4856004 4856005 rs34710637 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 610.000000,4398.000000, 0.121805,0.878195, maf-5-some-pop,maf-5-all-pops 622 chr1 4856168 4856169 rs2411946 0 + T T A/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 4003.000000,1005.000000, 0.799321,0.200679, maf-5-some-pop,maf-5-all-pops 622 chr1 4856297 4856298 rs140298846 0 + G G G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 G,T, 4944.000000,64.000000, 0.987220,0.012780, 622 chr1 4856320 4856321 rs77293842 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 622 chr1 4856334 4856335 rs145320719 0 + A A A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 4954.000000,54.000000, 0.989217,0.010783, 622 chr1 4856478 4856479 rs146869955 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 680.000000,4328.000000, 0.135783,0.864217, 622 chr1 4856794 4856796 rs142283784 0 + TG TG -/TG genomic deletion unknown 0 0 unknown range 1 6 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,TG, 668.000000,4340.000000, 0.133387,0.866613, 622 chr1 4856883 4856883 rs74490331 0 + - - -/G genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 4339.000000,669.000000, 0.866414,0.133586, 622 chr1 4856930 4856931 rs760816 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 A,G, 852.000000,4156.000000, 0.170128,0.829872, maf-5-some-pop,maf-5-all-pops 622 chr1 4857176 4857177 rs6426435 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4530.000000,478.000000, 0.904553,0.095447, maf-5-some-pop 622 chr1 4857370 4857371 rs72861354 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 668.000000,4340.000000, 0.133387,0.866613, maf-5-some-pop,maf-5-all-pops 622 chr1 4857794 4857795 rs144651976 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,C, 4895.000000,113.000000, 0.977436,0.022564, 622 chr1 4858155 4858156 rs10915604 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 C,G, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4858390 4858391 rs72639948 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4322.000000,686.000000, 0.863019,0.136981, maf-5-some-pop,maf-5-all-pops 622 chr1 4858580 4858581 rs115730336 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 95.000000,4913.000000, 0.018970,0.981030, maf-5-some-pop,maf-5-all-pops 622 chr1 4858665 4858666 rs16839670 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4522.000000,486.000000, 0.902955,0.097045, maf-5-some-pop 622 chr1 4858932 4858933 rs10158493 0 + T T G/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 G,T, 676.000000,4332.000000, 0.134984,0.865016, maf-5-some-pop,maf-5-all-pops 622 chr1 4858971 4858972 rs140748127 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4859307 4859308 rs10158511 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 C,T, 690.000000,4318.000000, 0.137780,0.862220, maf-5-some-pop 622 chr1 4859487 4859488 rs17345273 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 444.000000,4564.000000, 0.088658,0.911342, maf-5-some-pop 622 chr1 4859536 4859537 rs17345280 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,C, 4666.000000,342.000000, 0.931709,0.068291, maf-5-some-pop 622 chr1 4859564 4859565 rs61190545 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4180.000000,828.000000, 0.834665,0.165335, maf-5-some-pop,maf-5-all-pops 622 chr1 4859610 4859611 rs2142949 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3130.000000,1878.000000, 0.625000,0.375000, maf-5-some-pop 622 chr1 4859623 4859624 rs12087571 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4859726 4859727 rs12089516 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4719.000000,289.000000, 0.942292,0.057708, maf-5-some-pop 622 chr1 4859863 4859864 rs16839672 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 485.000000,4523.000000, 0.096845,0.903155, maf-5-some-pop 622 chr1 4859889 4859890 rs143981017 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 51.000000,4957.000000, 0.010184,0.989816, 622 chr1 4860099 4860101 rs140903713 0 + AA AA -/AA genomic deletion unknown 0 0 unknown range 1 3 1000GENOMES,LUNTER,SSMP, 2 -,AA, 88.000000,4920.000000, 0.017572,0.982428, 622 chr1 4860122 4860123 rs118100142 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4909.000000,99.000000, 0.980232,0.019768, maf-5-some-pop,maf-5-all-pops 622 chr1 4860787 4860788 rs114492862 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, 622 chr1 4861122 4861123 rs72861356 0 + T T A/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 638.000000,4370.000000, 0.127396,0.872604, maf-5-some-pop,maf-5-all-pops 622 chr1 4861159 4861160 rs4654607 0 + C C C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3132.000000,1876.000000, 0.625399,0.374601, maf-5-some-pop 622 chr1 4861369 4861370 rs111720667 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 188.000000,4820.000000, 0.037540,0.962460, 622 chr1 4861425 4861426 rs139348443 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4867.000000,141.000000, 0.971845,0.028155, 622 chr1 4861602 4861603 rs4654609 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,WI_SSAHASNP, 2 C,T, 61.000000,4947.000000, 0.012180,0.987819, 622 chr1 4861766 4861767 rs11588395 0 + C C C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4559.000000,449.000000, 0.910344,0.089657, maf-5-some-pop 622 chr1 4862122 4862123 rs116013208 0 + G G C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,G, 189.000000,4819.000000, 0.037740,0.962260, 622 chr1 4862141 4862142 rs141107621 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 C,T, 4906.000000,102.000000, 0.979633,0.020367, 622 chr1 4863375 4863376 rs2064168 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3181.000000,1827.000000, 0.635184,0.364816, maf-5-some-pop 622 chr1 4863404 4863405 rs117577370 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,GMI,JMKIDD_LAB,SSMP, 2 C,T, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 622 chr1 4863822 4863823 rs114733674 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 139.000000,4869.000000, 0.027756,0.972244, 622 chr1 4863912 4863913 rs760817 0 + T T C/T genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 4153.000000,855.000000, 0.829273,0.170727, maf-5-some-pop,maf-5-all-pops 622 chr1 4864663 4864664 rs181513091 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSMP,TISHKOFF, 2 A,C, 4951.000000,57.000000, 0.988618,0.011382, 622 chr1 4864984 4864985 rs10915606 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3181.000000,1827.000000, 0.635184,0.364816, maf-5-some-pop 622 chr1 4865317 4865318 rs10915607 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,EVA-GONL,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4633.000000,375.000000, 0.925120,0.074880, maf-5-some-pop 622 chr1 4865773 4865774 rs114555375 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4865857 4865858 rs10429868 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3145.000000,1863.000000, 0.627995,0.372005, maf-5-some-pop,maf-5-all-pops 622 chr1 4866140 4866141 rs12022466 0 + T T A/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 3145.000000,1863.000000, 0.627995,0.372005, maf-5-some-pop,maf-5-all-pops 622 chr1 4866290 4866291 rs7548676 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,WI_SSAHASNP, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, 622 chr1 4866419 4866420 rs12752806 0 + G G G/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3216.000000,1792.000000, 0.642173,0.357827, maf-5-some-pop 622 chr1 4866553 4866554 rs75013383 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4748.000000,260.000000, 0.948083,0.051917, maf-5-some-pop,maf-5-all-pops 622 chr1 4866840 4866841 rs10915608 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,SC_SNP,TISHKOFF, 2 A,C, 140.000000,4868.000000, 0.027955,0.972045, 622 chr1 4866948 4866949 rs185294231 0 + C C C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4953.000000,55.000000, 0.989018,0.010982, 622 chr1 4866991 4866992 rs192672243 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4953.000000,55.000000, 0.989018,0.010982, 622 chr1 4867095 4867096 rs144490541 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4953.000000,55.000000, 0.989018,0.010982, 622 chr1 4867338 4867339 rs10915609 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,C, 141.000000,4867.000000, 0.028155,0.971845, 622 chr1 4867751 4867752 rs12091444 0 + C C A/C genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,AFFY,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, 2 A,C, 157.000000,4851.000000, 0.031350,0.968650, maf-5-some-pop 622 chr1 4867849 4867850 rs12410445 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF, 2 G,T, 624.000000,4384.000000, 0.124601,0.875399, maf-5-some-pop 622 chr1 4868369 4868370 rs561001225 0 + C C C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 4949.000000,59.000000, 0.988219,0.011781, 622 chr1 4868371 4868372 rs372441097 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 141.000000,4867.000000, 0.028155,0.971845, 622 chr1 4869094 4869095 rs117536929 0 + C C C/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,G, 4946.000000,62.000000, 0.987620,0.012380, 622 chr1 4869217 4869218 rs12095157 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SC_SNP,TISHKOFF, 2 A,T, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4869257 4869258 rs10915610 0 + A A A/C genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3181.000000,1827.000000, 0.635184,0.364816, maf-5-some-pop 622 chr1 4869362 4869363 rs35490883 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,BILGI_BIOE,BL, 2 -,T, 759.000000,4249.000000, 0.151558,0.848442, 622 chr1 4869363 4869363 rs34166647 0 + - - -/T/TT genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,ABI,GMI,SSMP, 3 -,T,TT, 4166.000000,695.000000,147.000000, 0.831869,0.138778,0.029353, 622 chr1 4869473 4869474 rs12090199 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 301.000000,4707.000000, 0.060104,0.939896, maf-5-some-pop 622 chr1 4869492 4869493 rs115189015 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 96.000000,4912.000000, 0.019169,0.980831, 622 chr1 4869548 4869548 rs71580289 0 + - - -/CA/CACA genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,HUMANGENOME_JCVI,LUNTER, 3 -,CA,CACA, 3088.000000,1904.000000,16.000000, 0.616613,0.380192,0.003195, 622 chr1 4870694 4870695 rs116819724 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,MPI_MOLGEN,SSMP, 2 A,G, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 622 chr1 4870890 4870891 rs74051847 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ILLUMINA-UK, 2 C,T, 69.000000,4939.000000, 0.013778,0.986222, maf-5-some-pop,maf-5-all-pops 622 chr1 4870897 4870898 rs72861359 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4368.000000,640.000000, 0.872204,0.127796, maf-5-some-pop 622 chr1 4870938 4870939 rs111686263 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 63.000000,4945.000000, 0.012580,0.987420, 622 chr1 4871138 4871139 rs113145036 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 63.000000,4945.000000, 0.012580,0.987420, 622 chr1 4871300 4871319 rs377132791 0 + TTAGGGGGCAGTGAAACTA TTAGGGGGCAGTGAAACTA -/TTAGGGGGCAGTGAAACTA genomic deletion unknown 0 0 unknown range 1 2 1000GENOMES,BILGI_BIOE, 2 -,TTAGGGGGCAGTGAAACTA, 1815.000000,3193.000000, 0.362420,0.637580, 622 chr1 4871328 4871329 rs148572309 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, 622 chr1 4871383 4871384 rs59103994 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4484.000000,524.000000, 0.895367,0.104633, maf-5-some-pop 622 chr1 4871670 4871671 rs1118009 0 + A A A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1495.000000,3513.000000, 0.298522,0.701478, maf-5-some-pop,maf-5-all-pops 622 chr1 4871756 4871757 rs1118010 0 + C C C/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 1560.000000,3448.000000, 0.311502,0.688498, maf-5-some-pop,maf-5-all-pops 622 chr1 4871817 4871818 rs2206075 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 4527.000000,481.000000, 0.903954,0.096046, maf-5-some-pop 622 chr1 4871928 4871929 rs115515642 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 140.000000,4868.000000, 0.027955,0.972045, 622 chr1 4872074 4872075 rs2206077 0 + A A A/C genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,ABI,GMI,SC_JCM,TSC-CSHL, 2 A,C, 4527.000000,481.000000, 0.903954,0.096046, 622 chr1 4872570 4872571 rs10799262 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 3503.000000,1505.000000, 0.699481,0.300519, maf-5-some-pop,maf-5-all-pops 622 chr1 4872650 4872651 rs10915611 0 + C C C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2405.000000,2603.000000, 0.480232,0.519768, maf-5-some-pop,maf-5-all-pops 622 chr1 4872680 4872681 rs146987276 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 622 chr1 4872698 4872699 rs138084404 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 622 chr1 4873055 4873056 rs10915612 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 854.000000,4154.000000, 0.170527,0.829473, maf-5-some-pop,maf-5-all-pops 622 chr1 4873399 4873400 rs7549135 0 + C C C/G genomic single by-cluster,by-frequency,by-2hit-2allele,by-hapmap 0.5 0 unknown exact 1 7 BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA-UK,WI_SSAHASNP, 2 C,G, 6.000000,6.000000, 0.500000,0.500000, 622 chr1 4873409 4873410 rs7540367 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,WI_SSAHASNP, 2 A,G, 2604.000000,2404.000000, 0.519968,0.480032, maf-5-some-pop,maf-5-all-pops 622 chr1 4873607 4873608 rs150706696 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 98.000000,4910.000000, 0.019569,0.980431, 622 chr1 4873854 4873855 rs28896322 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,SSAHASNP,TISHKOFF, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4873893 4873894 rs12120205 0 + T T A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1827.000000,3181.000000, 0.364816,0.635184, maf-5-some-pop 622 chr1 4873903 4873904 rs146613694 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 622 chr1 4874397 4874398 rs140121093 0 + G G G/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 G,T, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4874404 4874405 rs35570480 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,EVA-GONL,HUMANGENOME_JCVI,JMKIDD_LAB,PJP, 2 A,G, 4952.000000,56.000000, 0.988818,0.011182, 622 chr1 4874504 4874505 rs10915613 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 3128.000000,1880.000000, 0.624601,0.375399, maf-5-some-pop,maf-5-all-pops 622 chr1 4875137 4875138 rs28829950 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 4633.000000,375.000000, 0.925120,0.074880, maf-5-some-pop,maf-5-all-pops 622 chr1 4875406 4875407 rs148942733 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 622 chr1 4875429 4875430 rs143659648 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 56.000000,4952.000000, 0.011182,0.988818, 622 chr1 4875844 4875846 rs201558649 0 + TG TG -/TG genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,TG, 51.000000,4957.000000, 0.010184,0.989816, 622 chr1 4876070 4876071 rs114249390 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 622 chr1 4876084 4876085 rs114884065 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4956.000000,52.000000, 0.989617,0.010383, 622 chr1 4876090 4876091 rs117852037 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 G,T, 73.000000,4935.000000, 0.014577,0.985423, maf-5-some-pop,maf-5-all-pops 622 chr1 4876362 4876363 rs72850508 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4526.000000,482.000000, 0.903754,0.096246, maf-5-some-pop,maf-5-all-pops 622 chr1 4876497 4876498 rs138146432 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 52.000000,4956.000000, 0.010383,0.989617, 622 chr1 4876689 4876690 rs145907754 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 622 chr1 4876717 4876718 rs138460763 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4876894 4876895 rs12145180 0 + C C C/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,G, 732.000000,4276.000000, 0.146166,0.853834, maf-5-some-pop,maf-5-all-pops 622 chr1 4876914 4876915 rs147973889 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 375.000000,4633.000000, 0.074880,0.925120, 622 chr1 4876951 4876952 rs186792478 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 622 chr1 4877042 4877043 rs10915615 0 + C C A/C genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 1845.000000,3163.000000, 0.368411,0.631589, maf-5-some-pop 622 chr1 4877052 4877053 rs114691398 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 140.000000,4868.000000, 0.027955,0.972045, 622 chr1 4877227 4877228 rs115734786 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4877438 4877439 rs150866429 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4877599 4877600 rs12118812 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 3504.000000,1504.000000, 0.699681,0.300319, maf-5-some-pop,maf-5-all-pops 622 chr1 4877648 4877649 rs139313139 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 99.000000,4909.000000, 0.019768,0.980232, 622 chr1 4877664 4877665 rs12118818 0 + T T G/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1829.000000,3179.000000, 0.365216,0.634784, maf-5-some-pop 622 chr1 4877674 4877675 rs12143219 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 1878.000000,3130.000000, 0.375000,0.625000, maf-5-some-pop,maf-5-all-pops 622 chr1 4877951 4877952 rs114074730 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4877992 4877993 rs77198457 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 98.000000,4910.000000, 0.019569,0.980431, 622 chr1 4878132 4878133 rs116469658 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 G,T, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4878171 4878172 rs115708701 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4878347 4878348 rs149134822 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,T, 98.000000,4910.000000, 0.019569,0.980431, 622 chr1 4878376 4878377 rs116152963 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4878461 4878462 rs114599428 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4878557 4878558 rs78496290 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 562.000000,4446.000000, 0.112220,0.887780, maf-5-some-pop,maf-5-all-pops 622 chr1 4878860 4878861 rs115244383 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 140.000000,4868.000000, 0.027955,0.972045, 622 chr1 4878870 4878871 rs1120120 0 + C C C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 733.000000,4275.000000, 0.146366,0.853634, maf-5-some-pop 622 chr1 4878989 4878990 rs116690939 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 140.000000,4868.000000, 0.027955,0.972045, 622 chr1 4879121 4879122 rs116552000 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 G,T, 140.000000,4868.000000, 0.027955,0.972045, 622 chr1 4879433 4879434 rs35799766 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BILGI_BIOE,BL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 1827.000000,3181.000000, 0.364816,0.635184, 622 chr1 4879444 4879445 rs35825966 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 C,T, 4720.000000,288.000000, 0.942492,0.057508, maf-5-some-pop,maf-5-all-pops 622 chr1 4880132 4880133 rs114496784 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 55.000000,4953.000000, 0.010982,0.989018, maf-5-some-pop,maf-5-all-pops 622 chr1 4880219 4880220 rs115399433 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 52.000000,4956.000000, 0.010383,0.989617, maf-5-some-pop,maf-5-all-pops 622 chr1 4880479 4880480 rs10915616 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2325.000000,2683.000000, 0.464257,0.535743, maf-5-some-pop,maf-5-all-pops 622 chr1 4880574 4880575 rs12121890 0 + T T C/T genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1829.000000,3179.000000, 0.365216,0.634784, maf-5-some-pop 622 chr1 4880916 4880917 rs2050010 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, 2 A,C, 526.000000,4482.000000, 0.105032,0.894968, maf-5-some-pop 622 chr1 4881245 4881246 rs147866068 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 622 chr1 4881266 4881267 rs12122126 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2977.000000,2031.000000, 0.594449,0.405551, maf-5-some-pop,maf-5-all-pops 622 chr1 4881399 4881400 rs10915617 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 483.000000,4525.000000, 0.096446,0.903554, maf-5-some-pop 622 chr1 4881521 4881522 rs72850515 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 641.000000,4367.000000, 0.127995,0.872005, maf-5-some-pop,maf-5-all-pops 622 chr1 4881550 4881551 rs149738316 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 56.000000,4952.000000, 0.011182,0.988818, 622 chr1 4881685 4881686 rs72850519 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 627.000000,4381.000000, 0.125200,0.874800, maf-5-some-pop,maf-5-all-pops 622 chr1 4881832 4881833 rs115081174 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4811.000000,197.000000, 0.960663,0.039337, 622 chr1 4882003 4882004 rs143522208 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4910.000000,98.000000, 0.980431,0.019569, 622 chr1 4882038 4882039 rs12117810 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1824.000000,3184.000000, 0.364217,0.635783, maf-5-some-pop 622 chr1 4882281 4882282 rs115862710 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4809.000000,199.000000, 0.960264,0.039736, 622 chr1 4882303 4882304 rs201316652 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,LUNTER, 2 -,C, 64.000000,4944.000000, 0.012780,0.987220, 622 chr1 4882321 4882322 rs10915619 0 + A A A/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,T, 2336.000000,2672.000000, 0.466454,0.533546, maf-5-some-pop,maf-5-all-pops 622 chr1 4882359 4882360 rs140862262 0 + A A A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4812.000000,196.000000, 0.960863,0.039137, 622 chr1 4882838 4882839 rs116683101 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4955.000000,53.000000, 0.989417,0.010583, 622 chr1 4882974 4882975 rs115459312 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4812.000000,196.000000, 0.960863,0.039137, 622 chr1 4883094 4883095 rs1883347 0 + T T C/T genomic single unknown 0 0 unknown exact 1 26 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 C,T, 3496.000000,1512.000000, 0.698083,0.301917, maf-5-some-pop,maf-5-all-pops 622 chr1 4883100 4883101 rs150478310 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 66.000000,4942.000000, 0.013179,0.986821, 622 chr1 4883369 4883370 rs138295932 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,G, 4868.000000,140.000000, 0.972045,0.027955, 622 chr1 4883506 4883507 rs149614402 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 622 chr1 4883545 4883561 rs138822088 0 + ACGTATATACATATAC ACGTATATACATATAC -/ACGTATATACATATAC genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BILGI_BIOE,GMI,LUNTER, 2 -,ACGTATATACATATAC, 1813.000000,3195.000000, 0.362021,0.637979, 622 chr1 4883597 4883607 rs547132903 0 + GTATATATAC GTATATATAC -/GTATATATAC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,GTATATATAC, 213.000000,4795.000000, 0.042532,0.957468, 622 chr1 4883612 4883613 rs55826703 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,HGSV, 2 C,T, 181.000000,4827.000000, 0.036142,0.963858, 622 chr1 4883630 4883631 rs4654610 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,GMI,HGSV,ILLUMINA-UK,WI_SSAHASNP, 2 C,T, 3517.000000,1491.000000, 0.702276,0.297724, 622 chr1 4883864 4883865 rs113672834 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4898.000000,110.000000, 0.978035,0.021965, 622 chr1 4884057 4884058 rs12069604 0 + T T G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1068.000000,3940.000000, 0.213259,0.786741, maf-5-some-pop 622 chr1 4884225 4884226 rs10915620 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP, 2 A,T, 4350.000000,658.000000, 0.868610,0.131390, maf-5-some-pop 622 chr1 4884311 4884311 rs146187669 0 + - - -/AAG genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,AAG, 3981.000000,1027.000000, 0.794928,0.205072, 622 chr1 4884348 4884349 rs114367563 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 102.000000,4906.000000, 0.020367,0.979633, maf-5-some-pop,maf-5-all-pops 622 chr1 4884502 4884503 rs4345781 0 + C C C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_JCM,SSMP,TISHKOFF, 2 C,G, 4728.000000,280.000000, 0.944089,0.055911, maf-5-some-pop 622 chr1 4884657 4884658 rs12070829 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 500.000000,4508.000000, 0.099840,0.900160, maf-5-some-pop 622 chr1 4884689 4884690 rs2411948 0 + T T A/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,T, 1162.000000,3846.000000, 0.232029,0.767971, maf-5-some-pop,maf-5-all-pops 622 chr1 4885456 4885457 rs7516549 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 477.000000,4531.000000, 0.095248,0.904752, maf-5-some-pop 622 chr1 4885650 4885651 rs370763593 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 4863.000000,145.000000, 0.971046,0.028954, 622 chr1 4885685 4885686 rs10915621 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 C,T, 1308.000000,3700.000000, 0.261182,0.738818, maf-5-some-pop 622 chr1 4885952 4885953 rs118124185 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,SSMP, 2 C,T, 142.000000,4866.000000, 0.028355,0.971645, maf-5-some-pop,maf-5-all-pops 622 chr1 4886855 4886856 rs6656536 0 + C C A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 540.000000,4468.000000, 0.107827,0.892173, 622 chr1 4886890 4886891 rs6664548 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BCM_SSAHASNP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 618.000000,4390.000000, 0.123403,0.876597, 622 chr1 4887386 4887387 rs12063965 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,AFFY,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,C, 230.000000,4778.000000, 0.045927,0.954073, maf-5-some-pop 622 chr1 4887638 4887639 rs72639967 0 + C C C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP, 2 C,T, 4578.000000,430.000000, 0.914137,0.085863, maf-5-some-pop,maf-5-all-pops 622 chr1 4887692 4887694 rs541642350 0 + AC AC -/AC genomic deletion unknown 0 0 unknown range 1 1 1000GENOMES, 2 -,AC, 1127.000000,3881.000000, 0.225040,0.774960, 622 chr1 4887694 4887694 rs553557257 0 + - - -/ACACAC genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,ACACAC, 4363.000000,645.000000, 0.871206,0.128794, 622 chr1 4888189 4888190 rs115439794 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 62.000000,4946.000000, 0.012380,0.987620, 622 chr1 4888369 4888370 rs12123816 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4386.000000,622.000000, 0.875799,0.124201, maf-5-some-pop 622 chr1 4888415 4888416 rs182086602 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 G,T, 4957.000000,51.000000, 0.989816,0.010184, 622 chr1 4888722 4888723 rs12028621 0 + A A A/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4611.000000,397.000000, 0.920727,0.079273, maf-5-some-pop 622 chr1 4888738 4888739 rs7518369 0 + C C C/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,JMKIDD_LAB,WI_SSAHASNP, 2 C,G, 4880.000000,128.000000, 0.974441,0.025559, 622 chr1 4888829 4888830 rs139909014 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 81.000000,4927.000000, 0.016174,0.983826, 622 chr1 4888846 4888847 rs143309841 0 + A A A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 4927.000000,81.000000, 0.983826,0.016174, 622 chr1 4889556 4889557 rs374471649 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 A,G, 4956.000000,52.000000, 0.989617,0.010383, 622 chr1 4889587 4889588 rs10915622 0 + C C A/C genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,C, 2053.000000,2955.000000, 0.409944,0.590056, maf-5-some-pop,maf-5-all-pops 622 chr1 4889603 4889604 rs10799265 0 + C C C/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3731.000000,1277.000000, 0.745008,0.254992, maf-5-some-pop,maf-5-all-pops 622 chr1 4889734 4889735 rs116766970 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 75.000000,4933.000000, 0.014976,0.985024, maf-5-some-pop,maf-5-all-pops 622 chr1 4889911 4889912 rs12028290 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 367.000000,4641.000000, 0.073283,0.926717, maf-5-some-pop 622 chr1 4890254 4890255 rs61766788 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 622 chr1 4890782 4890783 rs5772184 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,T, 3011.000000,1997.000000, 0.601238,0.398762, 622 chr1 4891176 4891177 rs72850530 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,JMKIDD_LAB,SSMP, 2 A,T, 543.000000,4465.000000, 0.108427,0.891573, maf-5-some-pop,maf-5-all-pops 622 chr1 4892049 4892050 rs143381445 0 + G G G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 G,T, 4956.000000,52.000000, 0.989617,0.010383, 622 chr1 4893037 4893038 rs144968066 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,T, 66.000000,4942.000000, 0.013179,0.986821, 622 chr1 4893245 4893246 rs61766789 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 583.000000,4425.000000, 0.116414,0.883586, 622 chr1 4893369 4893370 rs6688107 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 622 chr1 4894147 4894148 rs72639970 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB, 2 C,T, 404.000000,4604.000000, 0.080671,0.919329, maf-5-some-pop,maf-5-all-pops 622 chr1 4894802 4894803 rs72639972 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCM-HGSC-SUB,EVA-GONL,ILLUMINA,SSMP, 2 C,T, 4879.000000,129.000000, 0.974241,0.025759, maf-5-some-pop,maf-5-all-pops 622 chr1 4894992 4894993 rs2898845 0 + T T G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, 2 G,T, 2117.000000,2891.000000, 0.422724,0.577276, maf-5-some-pop,maf-5-all-pops 622 chr1 4895007 4895007 rs147363338 0 + - - -/ATAT genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,LUNTER, 2 -,ATAT, 4347.000000,661.000000, 0.868011,0.131989, 622 chr1 4895093 4895094 rs4384196 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ENSEMBL,EVA-GONL,GMI,PJP,SC_JCM,SSAHASNP, 2 A,C, 4125.000000,883.000000, 0.823682,0.176318, 622 chr1 4895095 4895096 rs200599834 0 + A A A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,GMI, 2 A,C, 4674.000000,334.000000, 0.933307,0.066693, 622 chr1 4895123 4895124 rs12076496 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SC_SNP, 2 A,G, 4914.000000,94.000000, 0.981230,0.018770, 622 chr1 4895147 4895148 rs144209958 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 169.000000,4839.000000, 0.033746,0.966254, 622 chr1 4895337 4895338 rs2898846 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 1666.000000,3342.000000, 0.332668,0.667332, maf-5-some-pop,maf-5-all-pops 622 chr1 4895515 4895516 rs147762242 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4934.000000,74.000000, 0.985224,0.014776, 622 chr1 4896260 4896261 rs12072038 0 + G G C/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1641.000000,3367.000000, 0.327676,0.672324, maf-5-some-pop,maf-5-all-pops 622 chr1 4896635 4896636 rs16839743 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ILLUMINA,PERLEGEN,TISHKOFF, 2 A,G, 58.000000,4950.000000, 0.011582,0.988419, maf-5-some-pop 622 chr1 4896725 4896726 rs12058187 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1661.000000,3347.000000, 0.331669,0.668331, maf-5-some-pop,maf-5-all-pops 622 chr1 4897135 4897136 rs60413281 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BGI,GMI,HGSV,JMKIDD_LAB,SSMP, 2 C,G, 4494.000000,514.000000, 0.897364,0.102636, maf-5-some-pop,maf-5-all-pops 622 chr1 4897386 4897387 rs79791497 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 168.000000,4840.000000, 0.033546,0.966454, maf-5-some-pop 622 chr1 4897566 4897567 rs12118185 0 + G G A/G genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF, 2 A,G, 742.000000,4266.000000, 0.148163,0.851837, maf-5-some-pop 622 chr1 4897960 4897961 rs117167590 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,SSMP, 2 C,T, 4928.000000,80.000000, 0.984026,0.015974, maf-5-some-pop,maf-5-all-pops 622 chr1 4898380 4898381 rs12067247 0 + A A A/C genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 4599.000000,409.000000, 0.918331,0.081669, maf-5-some-pop,maf-5-all-pops 622 chr1 4898472 4898473 rs79287601 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 205.000000,4803.000000, 0.040934,0.959065, 622 chr1 4898832 4898833 rs7522386 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 3177.000000,1831.000000, 0.634385,0.365615, maf-5-some-pop,maf-5-all-pops 622 chr1 4898877 4898878 rs6701723 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 121.000000,4887.000000, 0.024161,0.975839, maf-5-some-pop,maf-5-all-pops 622 chr1 4899151 4899152 rs114367880 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4950.000000,58.000000, 0.988419,0.011582, 622 chr1 4899238 4899239 rs570047860 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSIP, 2 C,T, 4952.000000,56.000000, 0.988818,0.011182, 622 chr1 4899275 4899276 rs111407205 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4602.000000,406.000000, 0.918930,0.081070, maf-5-some-pop,maf-5-all-pops 622 chr1 4899385 4899386 rs147359009 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 622 chr1 4899702 4899703 rs116227468 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 97.000000,4911.000000, 0.019369,0.980631, maf-5-some-pop,maf-5-all-pops 622 chr1 4899708 4899709 rs11579593 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 4784.000000,224.000000, 0.955272,0.044728, maf-5-some-pop 622 chr1 4899851 4899852 rs79680794 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 330.000000,4678.000000, 0.065895,0.934105, maf-5-some-pop,maf-5-all-pops 622 chr1 4900222 4900223 rs6671286 0 + A A A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 4099.000000,909.000000, 0.818490,0.181510, maf-5-some-pop,maf-5-all-pops 622 chr1 4900303 4900304 rs114338291 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4917.000000,91.000000, 0.981829,0.018171, 622 chr1 4900474 4900475 rs6677078 0 + T T C/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 1258.000000,3750.000000, 0.251198,0.748802, 622 chr1 4900811 4900812 rs141210637 0 + C C A/C genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,C, 70.000000,4938.000000, 0.013978,0.986022, 622 chr1 4900820 4900821 rs150389167 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP, 2 A,G, 74.000000,4934.000000, 0.014776,0.985224, 622 chr1 4900838 4900839 rs115982861 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4891.000000,117.000000, 0.976637,0.023363, maf-5-some-pop,maf-5-all-pops 622 chr1 4900876 4900877 rs114895374 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4932.000000,76.000000, 0.984824,0.015176, maf-5-some-pop,maf-5-all-pops 622 chr1 4900969 4900969 rs35005833 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 11 1000GENOMES,ABI,BILGI_BIOE,BUSHMAN,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,C, 1986.000000,3022.000000, 0.396565,0.603435, 622 chr1 4900994 4900995 rs138090589 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4942.000000,66.000000, 0.986821,0.013179, 622 chr1 4901380 4901381 rs113974674 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 191.000000,4817.000000, 0.038139,0.961861, maf-5-some-pop,maf-5-all-pops 622 chr1 4901578 4901579 rs114632827 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,TISHKOFF, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, 622 chr1 4901699 4901700 rs115272187 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4929.000000,79.000000, 0.984225,0.015775, 622 chr1 4901885 4901886 rs115416982 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 G,T, 4932.000000,76.000000, 0.984824,0.015176, 622 chr1 4901916 4901917 rs76341234 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 118.000000,4890.000000, 0.023562,0.976438, maf-5-some-pop 622 chr1 4902051 4902052 rs150498500 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 52.000000,4956.000000, 0.010383,0.989617, 622 chr1 4902154 4902155 rs75765713 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4506.000000,502.000000, 0.899760,0.100240, maf-5-some-pop 622 chr1 4902229 4902230 rs115082637 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4926.000000,82.000000, 0.983626,0.016374, 622 chr1 4902334 4902335 rs115304788 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 94.000000,4914.000000, 0.018770,0.981230, 622 chr1 4902548 4902549 rs112035065 0 + G G C/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,G, 113.000000,4895.000000, 0.022564,0.977436, maf-5-some-pop,maf-5-all-pops 622 chr1 4902605 4902606 rs11802289 0 + G G G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB, 2 G,T, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,maf-5-all-pops 622 chr1 4902989 4902990 rs78884277 0 + C C C/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4507.000000,501.000000, 0.899960,0.100040, maf-5-some-pop,maf-5-all-pops 622 chr1 4903057 4903058 rs111409896 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4895.000000,113.000000, 0.977436,0.022564, maf-5-some-pop,maf-5-all-pops 622 chr1 4903529 4903530 rs112139484 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 622 chr1 4903932 4903932 rs201267047 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 3 1000GENOMES,LUNTER,TISHKOFF, 2 -,T, 4919.000000,89.000000, 0.982228,0.017772, 622 chr1 4904018 4904019 rs11804726 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,T, 4819.000000,189.000000, 0.962260,0.037740, maf-5-some-pop,maf-5-all-pops 622 chr1 4904132 4904133 rs11802841 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,CSHL-HAPMAP,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 622 chr1 4904312 4904313 rs113559896 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB, 2 A,T, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop,maf-5-all-pops 622 chr1 4904330 4904331 rs116615425 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 622 chr1 4904372 4904373 rs115611680 0 + A A A/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 A,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 622 chr1 4904435 4904436 rs199668710 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 -,T, 76.000000,4932.000000, 0.015176,0.984824, 622 chr1 4904457 4904458 rs115914459 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,JMKIDD_LAB, 2 C,T, 229.000000,4779.000000, 0.045727,0.954273, maf-5-some-pop,maf-5-all-pops 622 chr1 4904571 4904572 rs111444871 0 + A A A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 A,T, 4855.000000,153.000000, 0.969449,0.030551, maf-5-some-pop,maf-5-all-pops 622 chr1 4904601 4904602 rs61766790 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSMP, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 622 chr1 4904739 4904740 rs10915624 0 + C C C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,G, 3762.000000,1246.000000, 0.751198,0.248802, maf-5-some-pop,maf-5-all-pops 622 chr1 4904830 4904831 rs115976099 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4932.000000,76.000000, 0.984824,0.015176, 622 chr1 4905058 4905059 rs34671182 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,EVA-GONL,GMI,LUNTER,SSMP,TISHKOFF, 2 -,G, 596.000000,4412.000000, 0.119010,0.880990, 622 chr1 4905398 4905399 rs114971660 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 76.000000,4932.000000, 0.015176,0.984824, 622 chr1 4905589 4905590 rs116531560 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 622 chr1 4905603 4905604 rs16839749 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,PERLEGEN,TISHKOFF, 2 A,G, 4779.000000,229.000000, 0.954273,0.045727, maf-5-some-pop,maf-5-all-pops 622 chr1 4905684 4905684 rs146771782 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,EVA-GONL,LUNTER,TISHKOFF, 2 -,C, 4948.000000,60.000000, 0.988019,0.011981, 622 chr1 4905917 4905918 rs79155617 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4513.000000,495.000000, 0.901158,0.098842, maf-5-some-pop 622 chr1 4905988 4905989 rs75711340 0 + T T C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 57.000000,4951.000000, 0.011382,0.988618, maf-5-some-pop,maf-5-all-pops 622 chr1 4906235 4906236 rs7547779 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 3636.000000,1372.000000, 0.726038,0.273962, maf-5-some-pop,maf-5-all-pops 622 chr1 4906323 4906324 rs78936956 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4889.000000,119.000000, 0.976238,0.023762, 622 chr1 4906357 4906358 rs11805663 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 A,T, 3534.000000,1474.000000, 0.705671,0.294329, maf-5-some-pop,maf-5-all-pops 622 chr1 4906433 4906434 rs11801684 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 622 chr1 4906439 4906440 rs11801685 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 189.000000,4819.000000, 0.037740,0.962260, maf-5-some-pop,maf-5-all-pops 622 chr1 4906513 4906514 rs11803627 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 4779.000000,229.000000, 0.954273,0.045727, 622 chr1 4906616 4906616 rs142445104 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,C, 4421.000000,587.000000, 0.882788,0.117212, 622 chr1 4906727 4906728 rs10915625 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1354.000000,3654.000000, 0.270367,0.729633, maf-5-some-pop 622 chr1 4906782 4906783 rs10915626 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1355.000000,3653.000000, 0.270567,0.729433, maf-5-some-pop 622 chr1 4906902 4906903 rs11804078 0 + T T C/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 76.000000,4932.000000, 0.015176,0.984824, maf-5-some-pop 622 chr1 4907524 4907525 rs115355841 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 91.000000,4917.000000, 0.018171,0.981829, 622 chr1 4907702 4907703 rs11582327 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2156.000000,2852.000000, 0.430511,0.569489, maf-5-some-pop,maf-5-all-pops 622 chr1 4907747 4907748 rs111980955 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 622 chr1 4907811 4907812 rs7536960 0 + T T C/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2155.000000,2853.000000, 0.430312,0.569688, maf-5-some-pop,maf-5-all-pops 622 chr1 4908060 4908061 rs116699286 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4918.000000,90.000000, 0.982029,0.017971, 622 chr1 4908590 4908591 rs34573971 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BGI,BILGI_BIOE,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, 2 -,A, 2038.000000,2970.000000, 0.406949,0.593051, 622 chr1 4908655 4908656 rs6669130 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1978.000000,3030.000000, 0.394968,0.605032, maf-5-some-pop,maf-5-all-pops 622 chr1 4908900 4908901 rs6683849 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2854.000000,2154.000000, 0.569888,0.430112, maf-5-some-pop,maf-5-all-pops 622 chr1 4909092 4909093 rs12725011 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2154.000000,2854.000000, 0.430112,0.569888, maf-5-some-pop,maf-5-all-pops 622 chr1 4909115 4909116 rs11582462 0 + A A A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2854.000000,2154.000000, 0.569888,0.430112, maf-5-some-pop,maf-5-all-pops 622 chr1 4909683 4909684 rs112378374 0 + A A A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,T, 4914.000000,94.000000, 0.981230,0.018770, maf-5-some-pop,maf-5-all-pops 622 chr1 4909807 4909808 rs7543326 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2224.000000,2784.000000, 0.444089,0.555911, maf-5-some-pop,maf-5-all-pops 622 chr1 4910003 4910004 rs115968493 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 59.000000,4949.000000, 0.011781,0.988219, 622 chr1 4910141 4910142 rs75745941 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4403.000000,605.000000, 0.879193,0.120807, maf-5-some-pop,maf-5-all-pops 622 chr1 4910247 4910248 rs77832946 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4884.000000,124.000000, 0.975240,0.024760, maf-5-some-pop 622 chr1 4910383 4910384 rs78659646 0 + T T G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 119.000000,4889.000000, 0.023762,0.976238, maf-5-some-pop 622 chr1 4910392 4910393 rs12033601 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 4400.000000,608.000000, 0.878594,0.121406, maf-5-some-pop,maf-5-all-pops 622 chr1 4910409 4910410 rs12030802 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SC_SNP, 2 A,G, 521.000000,4487.000000, 0.104034,0.895966, maf-5-some-pop,maf-5-all-pops 622 chr1 4910416 4910420 rs3030822 0 + TAGT TAGT -/TAGT genomic deletion unknown 0 0 unknown range 1 8 1000GENOMES,ABI,BILGI_BIOE,EVA-GONL,GMI,LUNTER,SSMP,TSC-CSHL, 2 -,TAGT, 577.000000,4431.000000, 0.115216,0.884784, 622 chr1 4910921 4910922 rs12405590 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops 622 chr1 4910998 4910999 rs12406100 0 + A A A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 4402.000000,606.000000, 0.878994,0.121006, maf-5-some-pop,maf-5-all-pops 622 chr1 4911245 4911246 rs112396141 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop,maf-5-all-pops 622 chr1 4911252 4911253 rs11805934 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop 622 chr1 4911256 4911257 rs11804908 0 + C C C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 4399.000000,609.000000, 0.878395,0.121605, maf-5-some-pop,maf-5-all-pops 622 chr1 4911298 4911298 rs35269072 0 + - - -/A genomic insertion unknown 0 0 unknown between 1 7 1000GENOMES,ABI,BUSHMAN,EVA-GONL,GMI,LUNTER,TISHKOFF, 2 -,A, 4402.000000,606.000000, 0.878994,0.121006, 622 chr1 4911352 4911353 rs11803656 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,G, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop,maf-5-all-pops 622 chr1 4911402 4911403 rs11803979 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 606.000000,4402.000000, 0.121006,0.878994, maf-5-some-pop,maf-5-all-pops 622 chr1 4911671 4911672 rs113701467 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,ILLUMINA,JMKIDD_LAB, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop,maf-5-all-pops 622 chr1 4912066 4912067 rs59870794 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,SSMP,TISHKOFF, 2 C,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops 622 chr1 4912239 4912240 rs78631745 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop,maf-5-all-pops 622 chr1 4912242 4912243 rs78972608 0 + C C A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 605.000000,4403.000000, 0.120807,0.879193, maf-5-some-pop,maf-5-all-pops 622 chr1 4912304 4912305 rs72850569 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops 622 chr1 4912353 4912354 rs78828488 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 609.000000,4399.000000, 0.121605,0.878395, maf-5-some-pop,maf-5-all-pops 622 chr1 4912361 4912362 rs77053286 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops 622 chr1 4912539 4912540 rs12032855 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop,maf-5-all-pops 622 chr1 4912544 4912545 rs12037901 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop,maf-5-all-pops 622 chr1 4912671 4912672 rs7545479 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops 622 chr1 4912676 4912677 rs7536674 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop,maf-5-all-pops 622 chr1 4913133 4913134 rs7553026 0 + T T C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop,maf-5-all-pops 622 chr1 4913142 4913143 rs6426439 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2838.000000,2170.000000, 0.566693,0.433307, maf-5-some-pop,maf-5-all-pops 622 chr1 4913146 4913147 rs7537029 0 + G G C/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop,maf-5-all-pops 622 chr1 4913264 4913277 rs137877704 0 + CCTTCCTCCTCCT CCTTCCTCCTCCT -/CCTTCCTCCTCCT genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,EVA-GONL,GMI,LUNTER,SSMP, 2 -,CCTTCCTCCTCCT, 607.000000,4401.000000, 0.121206,0.878794, 622 chr1 4913498 4913499 rs10915627 0 + A A A/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,T, 4516.000000,492.000000, 0.901757,0.098243, maf-5-some-pop 622 chr1 4913601 4913602 rs12033858 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 702.000000,4306.000000, 0.140176,0.859824, maf-5-some-pop,maf-5-all-pops 622 chr1 4913680 4913681 rs12038917 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,T, 607.000000,4401.000000, 0.121206,0.878794, maf-5-some-pop,maf-5-all-pops 622 chr1 4913714 4913714 rs557413526 0 + - - -/TCT genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,TCT, 4887.000000,121.000000, 0.975839,0.024161, 622 chr1 4913872 4913873 rs10915628 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3549.000000,1459.000000, 0.708666,0.291334, maf-5-some-pop,maf-5-all-pops 622 chr1 4913879 4913880 rs10915629 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4390.000000,618.000000, 0.876597,0.123403, maf-5-some-pop,maf-5-all-pops 622 chr1 4913922 4913923 rs10915630 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4401.000000,607.000000, 0.878794,0.121206, maf-5-some-pop,maf-5-all-pops 622 chr1 4913965 4913966 rs10799266 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1459.000000,3549.000000, 0.291334,0.708666, maf-5-some-pop,maf-5-all-pops 622 chr1 4914201 4914202 rs11807284 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 642.000000,4366.000000, 0.128195,0.871805, maf-5-some-pop,maf-5-all-pops 622 chr1 4914848 4914848 rs541883680 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 2 1000GENOMES,EVA-GONL, 2 -,T, 4505.000000,503.000000, 0.899561,0.100439, 622 chr1 4914909 4914910 rs6426440 0 + C C A/C genomic single unknown 0 0 unknown exact 1 24 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 3569.000000,1439.000000, 0.712660,0.287340, maf-5-some-pop,maf-5-all-pops 622 chr1 4914941 4914942 rs6426441 0 + A A A/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,T, 1447.000000,3561.000000, 0.288938,0.711062, maf-5-some-pop,maf-5-all-pops 622 chr1 4915220 4915221 rs113778504 0 + T T A/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,T, 139.000000,4869.000000, 0.027756,0.972244, maf-5-some-pop,maf-5-all-pops 622 chr1 4915285 4915286 rs2411949 0 + G G G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSMP,TISHKOFF,TSC-CSHL, 2 G,T, 1184.000000,3824.000000, 0.236422,0.763578, maf-5-some-pop,maf-5-all-pops 622 chr1 4915330 4915331 rs113446976 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,BUSHMAN, 2 -,C, 93.000000,4915.000000, 0.018570,0.981430, 622 chr1 4915469 4915470 rs6658680 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP, 2 A,G, 2268.000000,2740.000000, 0.452875,0.547125, 622 chr1 4915479 4915480 rs6692964 0 + G G G/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP, 2 G,T, 2821.000000,2187.000000, 0.563299,0.436701, 622 chr1 4915483 4915484 rs6692966 0 + G G A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 A,G, 2882.000000,2126.000000, 0.575479,0.424521, 622 chr1 4915846 4915847 rs113392793 0 + A A A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 A,G, 4936.000000,72.000000, 0.985623,0.014377, 622 chr1 4916068 4916069 rs113032485 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,TISHKOFF, 2 C,T, 4936.000000,72.000000, 0.985623,0.014377, 622 chr1 4916148 4916149 rs111405923 0 + G G G/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 4812.000000,196.000000, 0.960863,0.039137, maf-5-some-pop,maf-5-all-pops 622 chr1 4916203 4916204 rs6693706 0 + G G G/T genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2079.000000,2929.000000, 0.415136,0.584864, maf-5-some-pop,maf-5-all-pops 622 chr1 4917047 4917048 rs112730702 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,BUSHMAN,JMKIDD_LAB, 2 G,T, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop,maf-5-all-pops 622 chr1 4917240 4917241 rs6693352 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 2268.000000,2740.000000, 0.452875,0.547125, maf-5-some-pop,maf-5-all-pops 622 chr1 4917267 4917268 rs2898848 0 + G G A/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2719.000000,2289.000000, 0.542931,0.457069, maf-5-some-pop,maf-5-all-pops 622 chr1 4918648 4918649 rs10159142 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 2723.000000,2285.000000, 0.543730,0.456270, maf-5-some-pop,maf-5-all-pops 622 chr1 4918805 4918806 rs10799268 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 2723.000000,2285.000000, 0.543730,0.456270, maf-5-some-pop,maf-5-all-pops 622 chr1 4918930 4918931 rs115876565 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 C,T, 4922.000000,86.000000, 0.982827,0.017173, 622 chr1 4919011 4919012 rs10753387 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,TISHKOFF, 2 C,T, 2723.000000,2285.000000, 0.543730,0.456270, maf-5-some-pop,maf-5-all-pops 622 chr1 4919239 4919240 rs10753388 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2724.000000,2284.000000, 0.543930,0.456070, 622 chr1 4919302 4919303 rs10753389 0 + A A A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1218.000000,3790.000000, 0.243211,0.756789, 622 chr1 4919487 4919488 rs10915632 0 + G G A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2724.000000,2284.000000, 0.543930,0.456070, maf-5-some-pop,maf-5-all-pops 622 chr1 4919508 4919509 rs80051314 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4502.000000,506.000000, 0.898962,0.101038, maf-5-some-pop 622 chr1 4919761 4919762 rs10799269 0 + C C C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,G, 2285.000000,2723.000000, 0.456270,0.543730, maf-5-some-pop,maf-5-all-pops 622 chr1 4919794 4919795 rs10799270 0 + G G A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 2724.000000,2284.000000, 0.543930,0.456070, maf-5-some-pop,maf-5-all-pops 622 chr1 4919943 4919944 rs34069539 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BUSHMAN,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,T, 2969.000000,2039.000000, 0.592851,0.407149, 622 chr1 4919977 4919978 rs34463894 0 + C C -/C genomic deletion unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BL,BUSHMAN,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,C, 2717.000000,2291.000000, 0.542532,0.457468, 622 chr1 4920230 4920231 rs113924313 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,SSMP, 2 A,G, 2715.000000,2293.000000, 0.542133,0.457867, 622 chr1 4920293 4920294 rs76317088 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP, 2 C,T, 2287.000000,2721.000000, 0.456669,0.543331, 622 chr1 4920355 4920356 rs75674614 0 + T T G/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BUSHMAN,ENSEMBL,GMI,PJP,SSMP, 2 G,T, 2968.000000,2040.000000, 0.592652,0.407348, 622 chr1 4920366 4920367 rs78285092 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,ENSEMBL,GMI,PJP,SSMP, 2 A,C, 2718.000000,2290.000000, 0.542732,0.457268, 622 chr1 4920527 4920528 rs9726805 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 2723.000000,2285.000000, 0.543730,0.456270, 622 chr1 4920671 4920672 rs149334281 0 + T T A/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 A,T, 57.000000,4951.000000, 0.011382,0.988618, 622 chr1 4920887 4920888 rs79101973 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCM-HGSC-SUB,ENSEMBL,EVA-GONL,GMI,SSMP, 2 A,G, 2286.000000,2722.000000, 0.456470,0.543530, 622 chr1 4920989 4920990 rs78044233 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ENSEMBL,EVA-GONL,SSMP, 2 C,T, 2690.000000,2318.000000, 0.537141,0.462859, 622 chr1 4920997 4920998 rs76187045 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 2689.000000,2319.000000, 0.536941,0.463059, 622 chr1 4921091 4921092 rs61766808 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,SSMP, 2 C,T, 2295.000000,2713.000000, 0.458267,0.541733, 622 chr1 4921201 4921202 rs139357946 0 + T T G/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SSMP, 2 G,T, 215.000000,4793.000000, 0.042931,0.957069, 622 chr1 4921283 4921284 rs12131472 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,EVA-GONL,SC_SNP, 2 A,G, 59.000000,4949.000000, 0.011781,0.988219, 622 chr1 4921379 4921380 rs9726227 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,EVA-GONL,GMI,SSMP, 2 C,T, 2284.000000,2724.000000, 0.456070,0.543930, 622 chr1 4921515 4921516 rs9726241 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,PJP,SSMP, 2 A,C, 2724.000000,2284.000000, 0.543930,0.456070, 622 chr1 4921666 4921670 rs376206573 0 + TTGT TTGT -/TTGT genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BILGI_BIOE,SSIP,SSMP, 2 -,TTGT, 2535.000000,2473.000000, 0.506190,0.493810, 622 chr1 4921748 4921749 rs9726885 0 + A A A/C genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,ENSEMBL,EVA-GONL,GMI,SSAHASNP,SSMP, 2 A,C, 2284.000000,2724.000000, 0.456070,0.543930, 622 chr1 4921800 4921801 rs151152496 0 + T T G/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 G,T, 76.000000,4932.000000, 0.015176,0.984824, 622 chr1 4921809 4921810 rs9727283 0 + T T G/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,PJP,SSAHASNP,SSMP, 2 G,T, 2628.000000,2380.000000, 0.524760,0.475240, 622 chr1 4921827 4921828 rs9727284 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 G,T, 2627.000000,2381.000000, 0.524561,0.475439, 622 chr1 4921912 4921913 rs9726925 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,EVA-GONL,GMI,PJP,SSAHASNP,SSMP, 2 A,G, 2285.000000,2723.000000, 0.456270,0.543730, 622 chr1 4922014 4922015 rs10915634 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,GMI,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2287.000000,2721.000000, 0.456669,0.543331, 622 chr1 4922175 4922176 rs112599956 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,GMI,SSMP, 2 A,G, 593.000000,4415.000000, 0.118411,0.881589, 622 chr1 4922199 4922200 rs7411909 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,GMI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2284.000000,2724.000000, 0.456070,0.543930, 622 chr1 4922225 4922226 rs148962948 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 C,G, 4955.000000,53.000000, 0.989417,0.010583, 622 chr1 4922254 4922255 rs4617370 0 + G G A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2753.000000,2255.000000, 0.549720,0.450280, 622 chr1 4922631 4922632 rs12041609 0 + A A A/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,SC_SNP,SSMP, 2 A,T, 4415.000000,593.000000, 0.881589,0.118411, 622 chr1 4922820 4922821 rs6660173 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 C,T, 2285.000000,2723.000000, 0.456270,0.543730, 622 chr1 4922826 4922827 rs6660177 0 + C C A/C genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,SSAHASNP,SSMP, 2 A,C, 2722.000000,2286.000000, 0.543530,0.456470, 622 chr1 4922849 4922850 rs6668068 0 + T T C/T genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP, 2 C,T, 2972.000000,2036.000000, 0.593450,0.406550, 622 chr1 4922891 4922892 rs146007801 0 + G G C/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,G, 93.000000,4915.000000, 0.018570,0.981430, 622 chr1 4923097 4923098 rs6665282 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP, 2 A,G, 2284.000000,2724.000000, 0.456070,0.543930, 622 chr1 4923188 4923189 rs6665388 0 + A A A/G genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP, 2 A,G, 2284.000000,2724.000000, 0.456070,0.543930, 622 chr1 4923276 4923277 rs113727270 0 + A A A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 A,G, 2825.000000,2183.000000, 0.564097,0.435903, 622 chr1 4923346 4923347 rs112132690 0 + C C C/T genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 C,T, 2285.000000,2723.000000, 0.456270,0.543730, maf-5-some-pop,maf-5-all-pops 622 chr1 4923386 4923387 rs111715864 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 2284.000000,2724.000000, 0.456070,0.543930, maf-5-some-pop,maf-5-all-pops 622 chr1 4923473 4923474 rs144818916 0 + G G G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 G,T, 2284.000000,2724.000000, 0.456070,0.543930, 622 chr1 4923561 4923562 rs145369587 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,BL,EVA-GONL,GMI,PJP,SSMP, 2 A,G, 2724.000000,2284.000000, 0.543930,0.456070, 622 chr1 4924373 4924374 rs140548444 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 127.000000,4881.000000, 0.025359,0.974641, 622 chr1 4924393 4924394 rs150443004 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4913.000000,95.000000, 0.981030,0.018970, 622 chr1 4924394 4924395 rs6656943 0 + G G A/G genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP, 2 A,G, 2724.000000,2284.000000, 0.543930,0.456070, 622 chr1 4924410 4924411 rs149155551 0 + C C C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 4915.000000,93.000000, 0.981430,0.018570, 622 chr1 4924662 4924663 rs6674586 0 + T T A/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,T, 2720.000000,2288.000000, 0.543131,0.456869, 622 chr1 4924712 4924713 rs6674680 0 + T T C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,EVA-GONL,GMI,PJP,SC_SNP,SSAHASNP,SSMP, 2 C,T, 2715.000000,2293.000000, 0.542133,0.457867, 622 chr1 4924713 4924714 rs6657256 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,EVA-GONL,GMI,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2710.000000,2298.000000, 0.541134,0.458866, 622 chr1 4924821 4924822 rs12135493 0 + G G A/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BL,EVA-GONL,GMI,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2721.000000,2287.000000, 0.543331,0.456669, 622 chr1 4924842 4924843 rs6671779 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM_SSAHASNP,EVA-GONL,GMI,PJP,SC_SNP,SSAHASNP,SSMP, 2 A,G, 2287.000000,2721.000000, 0.456669,0.543331, 622 chr1 4924855 4924856 rs6674795 0 + T T A/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,EVA-GONL,GMI,PJP,SSAHASNP,SSMP, 2 A,T, 2178.000000,2830.000000, 0.434904,0.565096, 622 chr1 4924978 4924979 rs148259377 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,SSMP, 2 A,G, 63.000000,4945.000000, 0.012580,0.987420, 622 chr1 4924989 4924990 rs36062377 0 + G G G/T genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 G,T, 2303.000000,2705.000000, 0.459864,0.540136, 622 chr1 4925108 4925109 rs150761088 0 + G G A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 622 chr1 4925172 4925173 rs7529540 0 + T T C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SSMP,WI_SSAHASNP, 2 C,T, 2740.000000,2268.000000, 0.547125,0.452875, 622 chr1 4925451 4925452 rs149477360 0 + A A A/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 A,G, 4948.000000,60.000000, 0.988019,0.011981, 622 chr1 4925491 4925492 rs4559467 0 + G G A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,WI_SSAHASNP, 2 A,G, 2727.000000,2281.000000, 0.544529,0.455471, maf-5-some-pop,maf-5-all-pops 622 chr1 4925510 4925511 rs11809194 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ABI,CSHL-HAPMAP, 2 C,T, 4864.000000,144.000000, 0.971246,0.028754, 622 chr1 4925652 4925653 rs4638087 0 + G G C/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,BCMHGSC_JDW,BL,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,WI_SSAHASNP, 2 C,G, 2704.000000,2304.000000, 0.539936,0.460064, 622 chr1 4925692 4925693 rs4551566 0 + C C C/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2284.000000,2724.000000, 0.456070,0.543930, maf-5-some-pop,maf-5-all-pops 622 chr1 4926082 4926083 rs145046372 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, 622 chr1 4926173 4926174 rs7529926 0 + A A A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2284.000000,2724.000000, 0.456070,0.543930, maf-5-some-pop,maf-5-all-pops 622 chr1 4926301 4926302 rs7525613 0 + C C C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CSHL-HAPMAP,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 1438.000000,3570.000000, 0.287141,0.712859, 622 chr1 4926632 4926633 rs148894199 0 + A A A/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,T, 4420.000000,588.000000, 0.882588,0.117412, 622 chr1 4926949 4926950 rs10915643 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 G,T, 2979.000000,2029.000000, 0.594848,0.405152, 622 chr1 4927234 4927235 rs114923359 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,GMI,TISHKOFF, 2 A,G, 81.000000,4927.000000, 0.016174,0.983826, maf-5-some-pop,maf-5-all-pops 622 chr1 4927797 4927798 rs10915644 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 2827.000000,2181.000000, 0.564497,0.435503, maf-5-some-pop,maf-5-all-pops 622 chr1 4928186 4928187 rs10915645 0 + G G G/T genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2282.000000,2726.000000, 0.455671,0.544329, maf-5-some-pop,maf-5-all-pops 622 chr1 4928357 4928358 rs10915646 0 + T T C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,T, 3788.000000,1220.000000, 0.756390,0.243610, maf-5-some-pop,maf-5-all-pops 622 chr1 4928499 4928500 rs75452573 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4508.000000,500.000000, 0.900160,0.099840, maf-5-some-pop 622 chr1 4928559 4928560 rs6667156 0 + A A A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,GMI,HGSV,JMKIDD_LAB,SSMP, 2 A,T, 4475.000000,533.000000, 0.893570,0.106430, maf-5-some-pop,maf-5-all-pops 622 chr1 4929560 4929561 rs7520695 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,ILLUMINA,WI_SSAHASNP, 2 C,T, 4946.000000,62.000000, 0.987620,0.012380, 622 chr1 4929660 4929661 rs7525315 0 + A A A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2101.000000,2907.000000, 0.419529,0.580471, maf-5-some-pop,maf-5-all-pops 622 chr1 4929688 4929689 rs7511935 0 + G G C/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,TISHKOFF,WI_SSAHASNP, 2 C,G, 2901.000000,2107.000000, 0.579273,0.420727, maf-5-some-pop,maf-5-all-pops 622 chr1 4929801 4929802 rs7512035 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 2906.000000,2102.000000, 0.580272,0.419728, maf-5-some-pop,maf-5-all-pops 622 chr1 4929962 4929963 rs116816574 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,JMKIDD_LAB,SSMP,TISHKOFF, 2 C,T, 4745.000000,263.000000, 0.947484,0.052516, maf-5-some-pop,maf-5-all-pops 622 chr1 4930240 4930241 rs111721489 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP, 2 A,G, 4896.000000,112.000000, 0.977636,0.022364, maf-5-some-pop,maf-5-all-pops 622 chr1 4930250 4930251 rs2411950 0 + A A A/G genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, 2 A,G, 2144.000000,2864.000000, 0.428115,0.571885, maf-5-some-pop,maf-5-all-pops 622 chr1 4930749 4930750 rs114320104 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4931.000000,77.000000, 0.984625,0.015375, maf-5-some-pop,maf-5-all-pops 622 chr1 4930861 4930862 rs114890212 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 99.000000,4909.000000, 0.019768,0.980232, maf-5-some-pop,maf-5-all-pops 622 chr1 4930903 4930904 rs115447205 0 + G G A/G genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 A,G, 60.000000,4948.000000, 0.011981,0.988019, 622 chr1 4931044 4931045 rs76647621 0 + G G A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,EVA-GONL,ILLUMINA,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,G, 482.000000,4526.000000, 0.096246,0.903754, maf-5-some-pop 622 chr1 4931118 4931119 rs550619708 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 2 1000GENOMES,EVA-GONL, 2 -,A, 57.000000,4951.000000, 0.011382,0.988618, 622 chr1 4931284 4931285 rs116531104 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,G, 4908.000000,100.000000, 0.980032,0.019968, maf-5-some-pop,maf-5-all-pops 622 chr1 4931353 4931354 rs11588518 0 + A A A/G genomic single unknown 0 0 unknown exact 1 18 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1703.000000,3305.000000, 0.340056,0.659944, maf-5-some-pop,maf-5-all-pops 622 chr1 4931707 4931709 rs34042090 0 + CA CA -/CA genomic deletion unknown 0 0 unknown range 1 8 1000GENOMES,ABI,BILGI_BIOE,BL,BUSHMAN,EVA-GONL,GMI,SSMP, 2 -,CA, 3197.000000,1811.000000, 0.638379,0.361621, 622 chr1 4931987 4931988 rs113247687 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,EVA-GONL,JMKIDD_LAB,TISHKOFF, 2 C,T, 4808.000000,200.000000, 0.960064,0.039936, maf-5-some-pop,maf-5-all-pops 622 chr1 4932415 4932416 rs16839755 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,PERLEGEN, 2 A,C, 63.000000,4945.000000, 0.012580,0.987420, maf-5-some-pop 622 chr1 4932443 4932444 rs10915647 0 + T T G/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 G,T, 2204.000000,2804.000000, 0.440096,0.559904, maf-5-some-pop,maf-5-all-pops 622 chr1 4932654 4932655 rs12044914 0 + C C A/C genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BUSHMAN,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,C, 811.000000,4197.000000, 0.161941,0.838059, maf-5-some-pop 622 chr1 4932736 4932737 rs114181340 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 93.000000,4915.000000, 0.018570,0.981430, maf-5-some-pop,maf-5-all-pops 622 chr1 4932776 4932777 rs12044980 0 + C C C/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 C,G, 4487.000000,521.000000, 0.895966,0.104034, maf-5-some-pop 622 chr1 4932990 4932991 rs150321069 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,G, 4946.000000,62.000000, 0.987620,0.012380, 622 chr1 4933092 4933093 rs12091610 0 + C C C/T genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BUSHMAN,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 4925.000000,83.000000, 0.983427,0.016573, 622 chr1 4933133 4933134 rs11811054 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,ABI,CSHL-HAPMAP,JMKIDD_LAB, 2 C,T, 70.000000,4938.000000, 0.013978,0.986022, 622 chr1 4933153 4933154 rs12094945 0 + T T G/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,AFFY,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 G,T, 1251.000000,3757.000000, 0.249800,0.750200, maf-5-some-pop,maf-5-all-pops 622 chr1 4933234 4933235 rs10489136 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,AFFY,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1007.000000,4001.000000, 0.201078,0.798922, maf-5-some-pop 622 chr1 4933280 4933281 rs112334110 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4875.000000,133.000000, 0.973442,0.026557, maf-5-some-pop,maf-5-all-pops 622 chr1 4933301 4933302 rs11810050 0 + C C C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,ABI,CSHL-HAPMAP,EVA-GONL,JMKIDD_LAB,SSMP, 2 C,T, 4900.000000,108.000000, 0.978435,0.021566, 622 chr1 4933306 4933307 rs61764860 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 165.000000,4843.000000, 0.032947,0.967053, maf-5-some-pop 622 chr1 4933494 4933495 rs10489137 0 + T T G/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,AFFY,EVA-GONL,GMI,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP, 2 G,T, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 622 chr1 4933524 4933525 rs11809159 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,G, 1055.000000,3953.000000, 0.210663,0.789337, maf-5-some-pop,maf-5-all-pops 622 chr1 4933736 4933736 rs35226825 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 8 1000GENOMES,ABI,BL,EVA-GONL,LUNTER,PJP,SSMP,TISHKOFF, 2 -,T, 3407.000000,1601.000000, 0.680312,0.319688, 622 chr1 4934066 4934067 rs10489138 0 + C C C/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4673.000000,335.000000, 0.933107,0.066893, maf-5-some-pop 622 chr1 4934324 4934325 rs61764861 0 + T T C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,SSMP, 2 C,T, 163.000000,4845.000000, 0.032548,0.967452, maf-5-some-pop 622 chr1 4934566 4934567 rs61764862 0 + T T A/T genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,T, 161.000000,4847.000000, 0.032149,0.967851, maf-5-some-pop 622 chr1 4934707 4934708 rs12691490 0 + G G A/G genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP, 2 A,G, 991.000000,4017.000000, 0.197883,0.802117, maf-5-some-pop,maf-5-all-pops 622 chr1 4934851 4934852 rs11810903 0 + C C C/T genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 C,T, 3970.000000,1038.000000, 0.792732,0.207268, maf-5-some-pop,maf-5-all-pops 622 chr1 4934928 4934929 rs36040182 0 + T T -/T genomic deletion unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BL,BUSHMAN,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP, 2 -,T, 1227.000000,3781.000000, 0.245008,0.754992, 622 chr1 4934929 4934929 rs540954709 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 1 1000GENOMES, 2 -,T, 3901.000000,1107.000000, 0.778954,0.221046, 622 chr1 4934966 4934967 rs149775270 0 + T T C/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 C,T, 60.000000,4948.000000, 0.011981,0.988019, 622 chr1 4935046 4935047 rs10915648 0 + G G C/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 C,G, 956.000000,4052.000000, 0.190895,0.809105, maf-5-some-pop,maf-5-all-pops 622 chr1 4935585 4935586 rs61764863 0 + G G A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 161.000000,4847.000000, 0.032149,0.967851, 622 chr1 4935644 4935645 rs72851832 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BL,BUSHMAN,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP, 2 A,G, 990.000000,4018.000000, 0.197684,0.802316, 622 chr1 4935713 4935714 rs60862815 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,EVA-GONL,GMI,HGSV,JMKIDD_LAB,PJP,SSMP, 2 A,G, 3558.000000,1450.000000, 0.710463,0.289537, 622 chr1 4935799 4935800 rs74481779 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,G, 4016.000000,992.000000, 0.801917,0.198083, 622 chr1 4935822 4935823 rs58870614 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 178.000000,4830.000000, 0.035543,0.964457, 622 chr1 4936137 4936138 rs142284198 0 + A A A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 A,C, 4918.000000,90.000000, 0.982029,0.017971, 622 chr1 4936307 4936308 rs61764865 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,C, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 622 chr1 4936599 4936600 rs114907178 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4830.000000,178.000000, 0.964457,0.035543, maf-5-some-pop,maf-5-all-pops 622 chr1 4936982 4936983 rs141455883 0 + G G A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 622 chr1 4937051 4937052 rs17345447 0 + A A A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,AFFY,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,ILLUMINA,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 A,G, 4654.000000,354.000000, 0.929313,0.070687, maf-5-some-pop 622 chr1 4937075 4937076 rs17345454 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4668.000000,340.000000, 0.932109,0.067891, maf-5-some-pop 622 chr1 4937589 4937590 rs11808609 0 + G G A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,JMKIDD_LAB,PJP,TISHKOFF, 2 A,G, 218.000000,4790.000000, 0.043530,0.956470, maf-5-some-pop,maf-5-all-pops 622 chr1 4937636 4937637 rs11808610 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ABI,CSHL-HAPMAP, 2 A,G, 61.000000,4947.000000, 0.012180,0.987819, 622 chr1 4937689 4937690 rs35283465 0 + T T G/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,JMKIDD_LAB,SSMP,TISHKOFF, 2 G,T, 1397.000000,3611.000000, 0.278954,0.721046, 622 chr1 4937870 4937871 rs115731190 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 54.000000,4954.000000, 0.010783,0.989217, 622 chr1 4938052 4938053 rs10753390 0 + T T C/T genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4420.000000,588.000000, 0.882588,0.117412, maf-5-some-pop 622 chr1 4938099 4938100 rs11809892 0 + C C C/G genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,CSHL-HAPMAP, 2 C,G, 4948.000000,60.000000, 0.988019,0.011981, 622 chr1 4938193 4938194 rs113009576 0 + G G G/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 G,T, 4791.000000,217.000000, 0.956669,0.043331, maf-5-some-pop,maf-5-all-pops 622 chr1 4938509 4938510 rs10915649 0 + A A A/G genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,BCM-HGSC-SUB,BGI,EVA-GONL,JMKIDD_LAB,SC_SNP,SSMP,TISHKOFF, 2 A,G, 4587.000000,421.000000, 0.915935,0.084065, 622 chr1 4938807 4938808 rs61764890 0 + A A A/G genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4846.000000,162.000000, 0.967652,0.032348, maf-5-some-pop 622 chr1 4938986 4938987 rs12410393 0 + A A A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,HGSV,JMKIDD_LAB,SSMP, 2 A,C, 4860.000000,148.000000, 0.970447,0.029553, maf-5-some-pop,maf-5-all-pops 622 chr1 4938997 4938998 rs12094634 0 + A A A/G genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,G, 3939.000000,1069.000000, 0.786542,0.213458, maf-5-some-pop 622 chr1 4939100 4939101 rs753447 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,ABI,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, 2 C,T, 3939.000000,1069.000000, 0.786542,0.213458, maf-5-some-pop,maf-5-all-pops 622 chr1 4939164 4939165 rs17349572 0 + C C C/T genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,PERLEGEN,SSMP,TISHKOFF, 2 C,T, 4668.000000,340.000000, 0.932109,0.067891, maf-5-some-pop 622 chr1 4939669 4939670 rs116525781 0 + C C A/C genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,C, 178.000000,4830.000000, 0.035543,0.964457, maf-5-some-pop,maf-5-all-pops 622 chr1 4940107 4940122 rs143223778 0 + CCTGCCAGCCGGGGG CCTGCCAGCCGGGGG -/CCTGCCAGCCGGGGG genomic deletion unknown 0 0 unknown range 1 4 1000GENOMES,BILGI_BIOE,GMI,LUNTER, 2 -,CCTGCCAGCCGGGGG, 340.000000,4668.000000, 0.067891,0.932109, 622 chr1 4940714 4940715 rs7539101 0 + C C C/T genomic single unknown 0 0 unknown exact 1 20 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,T, 2221.000000,2787.000000, 0.443490,0.556510, maf-5-some-pop 622 chr1 4940884 4940885 rs12091403 0 + G G A/G genomic single unknown 0 0 unknown exact 1 11 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,SC_SNP,SSMP,TISHKOFF, 2 A,G, 1070.000000,3938.000000, 0.213658,0.786342, maf-5-some-pop 622 chr1 4940986 4940987 rs56377537 0 + C C A/C genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,HGSV,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 959.000000,4049.000000, 0.191494,0.808506, maf-5-some-pop,maf-5-all-pops 622 chr1 4941088 4941107 rs113827412 0 + ACTAAACCACATCCCTTGA ACTAAACCACATCCCTTGA -/ACTAAACCACATCCCTTGA genomic deletion unknown 0 0 unknown range 1 5 1000GENOMES,BL,BUSHMAN,GMI,LUNTER, 2 -,ACTAAACCACATCCCTTGA, 989.000000,4019.000000, 0.197484,0.802516, 622 chr1 4941409 4941410 rs10915651 0 + A A A/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,PJP,SSMP,TISHKOFF, 2 A,G, 3965.000000,1043.000000, 0.791733,0.208267, maf-5-some-pop,maf-5-all-pops 622 chr1 4941418 4941419 rs10915652 0 + T T C/T genomic single unknown 0 0 unknown exact 1 16 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 1607.000000,3401.000000, 0.320887,0.679113, maf-5-some-pop,maf-5-all-pops 622 chr1 4941729 4941730 rs144880295 0 + C C C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,JMKIDD_LAB, 2 C,T, 4948.000000,60.000000, 0.988019,0.011981, 622 chr1 4941734 4941735 rs4654462 0 + C C C/G genomic single unknown 0 0 unknown exact 1 14 1000GENOMES,ABI,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,WI_SSAHASNP, 2 C,G, 3984.000000,1024.000000, 0.795527,0.204473, maf-5-some-pop,maf-5-all-pops 622 chr1 4941853 4941854 rs4654463 0 + A A A/C genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,C, 656.000000,4352.000000, 0.130990,0.869010, maf-5-some-pop 622 chr1 4942364 4942365 rs59986990 0 + T T C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,HGSV,TISHKOFF, 2 C,T, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop,maf-5-all-pops 622 chr1 4942374 4942374 rs56838106 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 4 1000GENOMES,BILGI_BIOE,PJP,SSMP, 2 -,T, 3672.000000,1336.000000, 0.733227,0.266773, 622 chr1 4942783 4942784 rs4654615 0 + C C C/G genomic single unknown 0 0 unknown exact 1 23 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 C,G, 1919.000000,3089.000000, 0.383187,0.616813, maf-5-some-pop,maf-5-all-pops 622 chr1 4942863 4942864 rs11799924 0 + A A A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,ILLUMINA,JMKIDD_LAB,KRIBB_YJKIM,TISHKOFF, 2 A,G, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop 622 chr1 4943838 4943839 rs34133241 0 + G G A/G genomic single unknown 0 0 unknown exact 1 9 1000GENOMES,ABI,BCMHGSC_JDW,BL,ENSEMBL,EVA-GONL,GMI,PJP,SSMP, 2 A,G, 494.000000,4514.000000, 0.098642,0.901358, maf-5-some-pop,maf-5-all-pops 622 chr1 4943843 4943844 rs10915653 0 + G G C/G genomic single unknown 0 0 unknown exact 1 10 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSMP,TISHKOFF, 2 C,G, 1068.000000,3940.000000, 0.213259,0.786741, maf-5-some-pop,maf-5-all-pops 622 chr1 4944213 4944214 rs10733017 0 + T T C/T genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,JMKIDD_LAB,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, 2 C,T, 4403.000000,605.000000, 0.879193,0.120807, maf-5-some-pop 622 chr1 4944306 4944307 rs11576728 0 + C C A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSMP,TISHKOFF, 2 A,C, 1140.000000,3868.000000, 0.227636,0.772364, maf-5-some-pop,maf-5-all-pops 622 chr1 4944534 4944535 rs34501905 0 + A A -/A genomic deletion unknown 0 0 unknown exact 1 7 1000GENOMES,ABI,BILGI_BIOE,GMI,HUMANGENOME_JCVI,PJP,SSMP, 2 -,A, 3404.000000,1604.000000, 0.679712,0.320288, 622 chr1 4944841 4944842 rs7543026 0 + G G A/G genomic single unknown 0 0 unknown exact 1 19 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 981.000000,4027.000000, 0.195887,0.804113, maf-5-some-pop,maf-5-all-pops 622 chr1 4945357 4945358 rs114391179 0 + G G A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,ILLUMINA,TISHKOFF, 2 A,G, 92.000000,4916.000000, 0.018371,0.981629, maf-5-some-pop,maf-5-all-pops 622 chr1 4945466 4945467 rs61764891 0 + A A A/G genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 A,G, 4848.000000,160.000000, 0.968051,0.031949, maf-5-some-pop 622 chr1 4945480 4945481 rs6658585 0 + A A A/C genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,ILLUMINA-UK,JMKIDD_LAB,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 602.000000,4406.000000, 0.120208,0.879792, maf-5-some-pop 622 chr1 4945603 4945604 rs146233785 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4830.000000,178.000000, 0.964457,0.035543, 622 chr1 4945622 4945623 rs540326993 0 + C C A/C genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,C, 2115.000000,2893.000000, 0.422324,0.577676, 622 chr1 4945623 4945624 rs553558823 0 + T T A/T genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,T, 2115.000000,2893.000000, 0.422324,0.577676, 622 chr1 4945624 4945625 rs75615714 0 + C C A/C genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,ENSEMBL, 2 A,C, 2115.000000,2893.000000, 0.422324,0.577676, 622 chr1 4945651 4945652 rs115090550 0 + T T C/T genomic single unknown 0 0 unknown exact 1 2 1000GENOMES,TISHKOFF, 2 C,T, 110.000000,4898.000000, 0.021965,0.978035, maf-5-some-pop,maf-5-all-pops 622 chr1 4946251 4946252 rs34320332 0 + A A A/T genomic single unknown 0 0 unknown exact 1 12 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,PJP,TISHKOFF, 2 A,T, 3668.000000,1340.000000, 0.732428,0.267572, maf-5-some-pop,maf-5-all-pops 622 chr1 4946267 4946268 rs12061881 0 + C C C/T genomic single unknown 0 0 unknown exact 1 8 1000GENOMES,COMPLETE_GENOMICS,EVA-GONL,GMI,ILLUMINA-UK,JMKIDD_LAB,SC_SNP,TISHKOFF, 2 C,T, 3942.000000,1066.000000, 0.787141,0.212859, maf-5-some-pop,maf-5-all-pops 622 chr1 4946424 4946424 rs36118323 0 + - - -/T genomic insertion unknown 0 0 unknown between 1 9 1000GENOMES,ABI,BGI,BILGI_BIOE,EVA-GONL,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, 2 -,T, 3367.000000,1641.000000, 0.672324,0.327676, 622 chr1 4947152 4947153 rs4654617 0 + G G A/G genomic single unknown 0 0 unknown exact 1 22 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4406.000000,602.000000, 0.879792,0.120208, maf-5-some-pop 622 chr1 4947249 4947250 rs34260189 0 + G G -/G genomic deletion unknown 0 0 unknown exact 1 3 1000GENOMES,ABI,LUNTER, 2 -,G, 60.000000,4948.000000, 0.011981,0.988019, 622 chr1 4947373 4947374 rs4654618 0 + G G A/G genomic single unknown 0 0 unknown exact 1 21 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EVA-GONL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,JMKIDD_LAB,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, 2 A,G, 4406.000000,602.000000, 0.879792,0.120208, maf-5-some-pop 622 chr1 4947443 4947444 rs11576619 0 + A A A/C genomic single unknown 0 0 unknown exact 1 17 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EVA-GONL,GMI,HUMANGENOME_JCVI,JMKIDD_LAB,PJP,SSAHASNP,SSMP,TISHKOFF, 2 A,C, 3689.000000,1319.000000, 0.736621,0.263379, maf-5-some-pop,maf-5-all-pops 622 chr1 4947807 4947808 rs61764892 0 + T T C/T genomic single unknown 0 0 unknown exact 1 6 1000GENOMES,BCMHGSC_JDW,EVA-GONL,GMI,JMKIDD_LAB,SSMP, 2 C,T, 162.000000,4846.000000, 0.032348,0.967652, maf-5-some-pop 622 chr1 4948279 4948280 rs112269344 0 + C C C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_LAB,TISHKOFF, 2 C,T, 4786.000000,222.000000, 0.955671,0.044329, maf-5-some-pop,maf-5-all-pops 622 chr1 4948335 4948336 rs6699783 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BCM_SSAHASNP,JMKIDD_LAB,TISHKOFF, 2 C,T, 177.000000,4831.000000, 0.035344,0.964656, maf-5-some-pop,maf-5-all-pops 622 chr1 4948411 4948412 rs59534952 0 + C C C/T genomic single unknown 0 0 unknown exact 1 13 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, 2 C,T, 4028.000000,980.000000, 0.804313,0.195687, 622 chr1 4948443 4948444 rs12060164 0 + A A A/T genomic single unknown 0 0 unknown exact 1 15 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,EVA-GONL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, 2 A,T, 1990.000000,3018.000000, 0.397364,0.602636, 622 chr1 4948444 4948445 rs61764893 0 + A A A/G genomic single unknown 0 0 unknown exact 1 5 1000GENOMES,BCMHGSC_JDW,ENSEMBL,EVA-GONL,SSMP, 2 A,G, 4846.000000,162.000000, 0.967652,0.032348, 622 chr1 4948504 4948505 rs116782735 0 + A A A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 4915.000000,93.000000, 0.981430,0.018570, maf-5-some-pop,maf-5-all-pops 622 chr1 4948529 4948530 rs114710760 0 + A A A/G genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 A,G, 4917.000000,91.000000, 0.981829,0.018171, 622 chr1 4948954 4948955 rs116105043 0 + C C C/T genomic single unknown 0 0 unknown exact 1 3 1000GENOMES,JMKIDD_LAB,TISHKOFF, 2 C,T, 4832.000000,176.000000, 0.964856,0.035144, maf-5-some-pop,maf-5-all-pops 622 chr1 4948998 4948999 rs114828603 0 + G G A/G genomic single unknown 0 0 unknown exact 1 1 1000GENOMES, 2 A,G, 125.000000,4883.000000, 0.024960,0.975040, maf-5-some-pop,maf-5-all-pops 622 chr1 4949614 4949615 rs112601312 0 + C C A/C genomic single unknown 0 0 unknown exact 1 7 1000GENOMES,BUSHMAN,EVA-GONL,GMI,JMKIDD_LAB,SSMP,TISHKOFF, 2 A,C, 363.000000,4645.000000, 0.072484,0.927516, maf-5-some-pop 622 chr1 4950177 4950178 rs113682114 0 + T T C/T genomic single unknown 0 0 unknown exact 1 4 1000GENOMES,BUSHMAN,JMKIDD_